HHsearch alignment for GI: 254780809 and conserved domain: cd04140

>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.39  E-value=1.4e-12  Score=107.16  Aligned_cols=132  Identities=20%  Similarity=0.283  Sum_probs=91.7

Q ss_pred             CCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCCEEECCCCCCCCCE--EEEEEECCHHCCCCHHHHHHHHHHHHHHHH
Q ss_conf             302431146631888999985520002345468721100012456835--899950810002410356666788899850
Q gi|254780809|r  220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY--LVKISDTAGIRETDDIVEKEGIKRTFLEVE  297 (440)
Q Consensus       220 ~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTTRD~i~~~~~i~g~--~~~l~DTaGir~t~d~IE~~GI~ra~~~i~  297 (440)
T Consensus         2 ~KivllGd~~VGKTsli~r~~~~~F--~~~y~~Ti~~~~~~~i~~~~~~~~l~iwDtaG~e~~~~--------l~~~~~~   71 (165)
T cd04140           2 YRVVVFGAGGVGKSSLVLRFVKGTF--RESYIPTIEDTYRQVISCSKNICTLQITDTTGSHQFPA--------MQRLSIS   71 (165)
T ss_pred             EEEEEECCCCCCHHHHHHHHHHCCC--CCCCCCCCCCEEEEEEEECCEEEEEEEEECCCCCCCCC--------CHHHHHC
T ss_conf             0999989999769999999964969--99868845420558999999999999998999846542--------3244506


Q ss_pred             HHCCEEECCCCCCHHHHHH---------------HCCCCCCCCCCCCCCCCCCCHH-------------HHHHHHHHHHH
Q ss_conf             3011020135898566343---------------1289853222233344654200-------------00013333232
Q gi|254780809|r  298 NADLILLLKEINSKKEISF---------------PKNIDFIFIGTKSDLYSTYTEE-------------YDHLISSFTGE  349 (440)
Q Consensus       298 ~aDlil~v~D~~~~~~~~~---------------~~~~~~i~V~NK~Dl~~~~~~~-------------~~~~ISaktg~  349 (440)
T Consensus        72 ~a~~~ilvydit~~~Sf~~~~~~~~~i~~~~~~~~~~~piilVgNK~Dl~~~r~V~~~e~~~~a~~~~~~~~E~SAk~~~  151 (165)
T cd04140          72 KGHAFILVYSVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKREVSSNEGAACATEWNCAFMETSAKTNH  151 (165)
T ss_pred             CCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHCCCEEEEECCCCCC
T ss_conf             88579998138987899999999999999961588888789986424640027889999999999869889997447794


Q ss_pred             HHHHHHHHHHHH
Q ss_conf             358999999999
Q gi|254780809|r  350 GLEELINKIKSI  361 (440)
Q Consensus       350 Gi~~L~~~I~~~  361 (440)
T Consensus       152 nV~e~F~~l~~l  163 (165)
T cd04140         152 NVQELFQELLNL  163 (165)
T ss_pred             CHHHHHHHHHHC
T ss_conf             879999999814