HHsearch alignment for GI: 254780809 and conserved domain: cd04153
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.51 E-value=5e-14 Score=117.11 Aligned_cols=132 Identities=21% Similarity=0.296 Sum_probs=95.9
Q ss_pred HHCCCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCCEEECCCCCCCCCEEEEEEECCHHCCCCHHHHHHHHHHHHHHH
Q ss_conf 20230243114663188899998552000234546872110001245683589995081000241035666678889985
Q gi|254780809|r 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296 (440)
Q Consensus 217 ~~g~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTTRD~i~~~~~i~g~~~~l~DTaGir~t~d~IE~~GI~ra~~~i 296 (440)
T Consensus 13 ~k~~KililG~~~sGKTsil~~l~~~~~~~~~pT~G~~~----~~i~~~~~~~~iwD~~G~e~~~--------~~~~~y~ 80 (174)
T cd04153 13 RKEYKVIIVGLDNAGKTTILYQFLLGEVVHTSPTIGSNV----EEIVYKNIRFLMWDIGGQESLR--------SSWNTYY 80 (174)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCE----EEEEECCEEEEEEECCCCCCCC--------CHHHHHH
T ss_conf 977999999899998899999997399277167236046----9999788899999899986566--------2267770
Q ss_pred HHHCCEEECCCCCCHHHHH-------------HHCCCCCCCCCCCCCCCCCCCHH----------------HHHHHHHHH
Q ss_conf 0301102013589856634-------------31289853222233344654200----------------000133332
Q gi|254780809|r 297 ENADLILLLKEINSKKEIS-------------FPKNIDFIFIGTKSDLYSTYTEE----------------YDHLISSFT 347 (440)
Q Consensus 297 ~~aDlil~v~D~~~~~~~~-------------~~~~~~~i~V~NK~Dl~~~~~~~----------------~~~~ISakt 347 (440)
T Consensus 81 ~~a~~ii~VvD~sd~~~~~~~~~~l~~~l~~~~~~~~pili~~NK~Dl~~~~~~~ei~~~l~l~~~~~~~~~~~~~SAkt 160 (174)
T cd04153 81 TNTDAVILVIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGAMTPAEISESLGLTSIRDHTWHIQGCCALT 160 (174)
T ss_pred CCCCEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCC
T ss_conf 57753799997678889999999999997261016982899995555655789999999974777635980999966858
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 3235899999999
Q gi|254780809|r 348 GEGLEELINKIKS 360 (440)
Q Consensus 348 g~Gi~~L~~~I~~ 360 (440)
T Consensus 161 G~Gv~e~f~wLa~ 173 (174)
T cd04153 161 GEGLPEGLDWIAS 173 (174)
T ss_pred CCCHHHHHHHHHC
T ss_conf 9198999999866