HHsearch alignment for GI: 254780809 and conserved domain: cd04162
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.26 E-value=3.1e-11 Score=97.79 Aligned_cols=133 Identities=17% Similarity=0.318 Sum_probs=93.6
Q ss_pred CEEEECCCCCCHHHHHHHHHCCHH-CCCCCCCCCCEEECCCCCCCCCEEEEEEECCHHCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 024311466318889999855200-0234546872110001245683589995081000241035666678889985030
Q gi|254780809|r 221 KIVILGHSNAGKSSLFNALAKKDV-AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299 (440)
Q Consensus 221 ~v~i~G~pN~GKSSL~N~L~~~~~-aIVs~~~GTTRD~i~~~~~i~g~~~~l~DTaGir~t~d~IE~~GI~ra~~~i~~a 299 (440)
T Consensus 1 kIlilGLd~aGKTTil~~l~~~~~~~~~~PT~G----f~~~~i~~~~~~l~~wDlgGq~~~R--------~~W~~Y~~~~ 68 (164)
T cd04162 1 QILVLGLDGAGKTSLLHSLSSERSLESVVPTTG----FNSVAIPTQDAIMELLEIGGSQNLR--------KYWKRYLSGS 68 (164)
T ss_pred CEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCC----CCEEEEEECCEEEEEEECCCHHHHH--------HHHHHHHHCC
T ss_conf 999996799989999999816998765356327----7469999899999998537528886--------5699871177
Q ss_pred CCEEECCCCCCHHHH-----------HHHCCCCCCCCCCCCCCCCCCCHH----------------HHHHHHHHHHHHHH
Q ss_conf 110201358985663-----------431289853222233344654200----------------00013333232358
Q gi|254780809|r 300 DLILLLKEINSKKEI-----------SFPKNIDFIFIGTKSDLYSTYTEE----------------YDHLISSFTGEGLE 352 (440)
Q Consensus 300 Dlil~v~D~~~~~~~-----------~~~~~~~~i~V~NK~Dl~~~~~~~----------------~~~~ISaktg~Gi~ 352 (440)
T Consensus 69 ~gIIfVVDssD~~rl~eak~~L~~ll~~~~~~PlLIlaNKqDl~~a~s~~ei~~~L~L~~i~~~r~w~iq~~s~~g~gl~ 148 (164)
T cd04162 69 QGLIFVVDSADSERLPLARQELHQLLQHPPDLPLVVLANKQDLPAARSVQEIHKELELEPIARGRRWILQGTSLDDDGSP 148 (164)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCHHHHHHHCCCCCCCCCCCEEEEEECCCCCCCH
T ss_conf 58999995688889999999999997087998699998632433699999999866994637999889971104799858
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 9999999996322
Q gi|254780809|r 353 ELINKIKSILSNK 365 (440)
Q Consensus 353 ~L~~~I~~~l~~~ 365 (440)
T Consensus 149 ~~~~~l~~~~~~~ 161 (164)
T cd04162 149 SRMEAVKDLLSQL 161 (164)
T ss_pred HHHHHHHHHHHHH
T ss_conf 9999999999998