HHsearch alignment for GI: 254780809 and conserved domain: cd04172
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=99.12 E-value=3.5e-10 Score=90.45 Aligned_cols=132 Identities=22% Similarity=0.306 Sum_probs=86.0
Q ss_pred CCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCCEEECCCCCCCCCE--EEEEEECCHHCCCCHHHHHHHHHHHHHHHH
Q ss_conf 302431146631888999985520002345468721100012456835--899950810002410356666788899850
Q gi|254780809|r 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY--LVKISDTAGIRETDDIVEKEGIKRTFLEVE 297 (440)
Q Consensus 220 ~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTTRD~i~~~~~i~g~--~~~l~DTaGir~t~d~IE~~GI~ra~~~i~ 297 (440)
T Consensus 6 ~KivlvGd~~VGKTsLi~r~~~~~F--~~~y~pTi~~~~~~~~~i~~~~v~l~iwDTaGqe~f~~--------l~~~~y~ 75 (182)
T cd04172 6 CKIVVVGDSQCGKTALLHVFAKDCF--PENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDN--------VRPLSYP 75 (182)
T ss_pred EEEEEECCCCCCHHHHHHHHHHCCC--CCCCCCEEEEEEEEEEEECCEEEEEEEEECCCCHHCCC--------CCHHHHC
T ss_conf 8999999999899999999983999--99868735322689999999999999996898620122--------1255512
Q ss_pred HHCCEEECCCCCCHHHHHH------------HCCCCCCCCCCCCCCCCCCCH----------------------H-H---
Q ss_conf 3011020135898566343------------128985322223334465420----------------------0-0---
Q gi|254780809|r 298 NADLILLLKEINSKKEISF------------PKNIDFIFIGTKSDLYSTYTE----------------------E-Y--- 339 (440)
Q Consensus 298 ~aDlil~v~D~~~~~~~~~------------~~~~~~i~V~NK~Dl~~~~~~----------------------~-~--- 339 (440)
T Consensus 76 ~~~~~ilvydit~~~Sf~~v~~~W~~ei~~~~~~~~iiLVGnK~DLr~~~~~~~~l~~~~~~~Vs~eeg~~~A~~~g~~~ 155 (182)
T cd04172 76 DSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQIGAAT 155 (182)
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCE
T ss_conf 78789999648977889999999999999868799889996171012441456677645677869999999999769979
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHH
Q ss_conf 0013333232-358999999999
Q gi|254780809|r 340 DHLISSFTGE-GLEELINKIKSI 361 (440)
Q Consensus 340 ~~~ISaktg~-Gi~~L~~~I~~~ 361 (440)
T Consensus 156 y~EtSAk~~~n~V~e~F~~a~~a 178 (182)
T cd04172 156 YIECSALQSENSVRDIFHVATLA 178 (182)
T ss_pred EEECCCCCCCCCHHHHHHHHHHH
T ss_conf 99917078995989999999999