Query gi|254780809|ref|YP_003065222.1| tRNA modification GTPase TrmE [Candidatus Liberibacter asiaticus str. psy62]
Match_columns 440
No_of_seqs 248 out of 5964
Neff 6.7
Searched_HMMs 39220
Date Sun May 29 18:27:10 2011
Command /home/congqian_1/programs/hhpred/hhsearch -i 254780809.hhm -d /home/congqian_1/database/cdd/Cdd.hhm
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK05291 trmE tRNA modificatio 100.0 0 0 1059.2 39.9 436 1-440 1-445 (445)
2 COG0486 ThdF Predicted GTPase 100.0 0 0 1036.8 38.6 435 4-440 3-454 (454)
3 TIGR00450 thdF tRNA modificati 100.0 0 0 832.0 28.1 427 12-440 5-473 (473)
4 KOG1191 consensus 100.0 0 0 709.4 25.3 434 7-440 43-531 (531)
5 pfam10396 TrmE_N GTP-binding p 100.0 1.4E-45 0 335.5 13.5 114 7-122 1-114 (114)
6 cd04164 trmE TrmE (MnmE, ThdF, 100.0 8.9E-36 2.3E-40 268.1 9.0 144 219-362 1-156 (157)
7 PRK09518 bifunctional cytidyla 100.0 6.8E-36 1.7E-40 268.9 7.9 153 217-369 450-629 (714)
8 cd01878 HflX HflX subfamily. 100.0 2.8E-34 7.2E-39 257.7 10.4 173 187-362 6-204 (204)
9 PRK00093 engA GTP-binding prot 100.0 1.1E-34 2.8E-39 260.5 8.1 154 217-370 170-352 (438)
10 PRK03003 engA GTP-binding prot 100.0 2.2E-34 5.5E-39 258.5 8.1 151 219-369 211-388 (474)
11 TIGR03594 GTPase_EngA ribosome 100.0 2.1E-34 5.4E-39 258.5 7.8 154 217-370 170-351 (429)
12 TIGR03594 GTPase_EngA ribosome 100.0 1.5E-33 3.7E-38 252.7 9.9 144 221-364 1-161 (429)
13 PRK00093 engA GTP-binding prot 100.0 1.7E-33 4.3E-38 252.3 10.1 146 220-365 2-165 (438)
14 PRK00089 era GTP-binding prote 100.0 1.9E-33 4.9E-38 251.8 9.3 150 215-365 5-175 (296)
15 PRK03003 engA GTP-binding prot 100.0 5.5E-33 1.4E-37 248.7 10.1 145 220-364 39-200 (474)
16 cd01894 EngA1 EngA1 subfamily. 100.0 2.9E-33 7.3E-38 250.7 8.2 140 223-362 1-157 (157)
17 pfam02421 FeoB_N Ferrous iron 100.0 5.8E-32 1.5E-36 241.6 11.7 166 221-392 1-184 (188)
18 cd01895 EngA2 EngA2 subfamily. 100.0 1.7E-32 4.3E-37 245.3 9.0 145 218-362 1-174 (174)
19 COG1160 Predicted GTPases [Gen 100.0 2.2E-32 5.5E-37 244.6 7.2 154 217-370 176-358 (444)
20 cd04163 Era Era subfamily. Er 100.0 4.3E-32 1.1E-36 242.5 8.3 145 217-362 2-168 (168)
21 PRK09518 bifunctional cytidyla 100.0 2.1E-31 5.4E-36 237.7 10.3 145 220-364 280-441 (714)
22 COG1160 Predicted GTPases [Gen 100.0 2.2E-31 5.6E-36 237.6 9.7 143 220-362 4-164 (444)
23 cd01879 FeoB Ferrous iron tran 100.0 1.2E-29 3E-34 225.6 8.3 139 224-363 1-157 (158)
24 cd01897 NOG NOG1 is a nucleola 100.0 1.2E-29 3.1E-34 225.4 8.3 138 220-362 1-167 (168)
25 COG1159 Era GTPase [General fu 100.0 1.9E-28 4.8E-33 217.3 9.5 159 216-375 4-184 (298)
26 cd00880 Era_like Era (E. coli 100.0 6.6E-29 1.7E-33 220.4 6.7 138 224-362 1-163 (163)
27 cd01898 Obg Obg subfamily. Th 100.0 1.7E-28 4.2E-33 217.6 6.9 140 221-362 2-170 (170)
28 PRK00454 engB GTPase EngB; Rev 99.9 2.5E-28 6.4E-33 216.3 7.4 143 218-363 23-196 (196)
29 TIGR03156 GTP_HflX GTP-binding 99.9 7.9E-27 2E-31 205.9 10.1 174 186-362 153-351 (351)
30 cd01876 YihA_EngB The YihA (En 99.9 3.4E-27 8.7E-32 208.5 7.6 139 221-362 1-170 (170)
31 cd01881 Obg_like The Obg-like 99.9 6.6E-27 1.7E-31 206.5 7.7 137 224-362 1-176 (176)
32 cd01896 DRG The developmentall 99.9 1.5E-26 3.9E-31 204.0 8.1 142 220-363 1-226 (233)
33 PRK11058 putative GTPase HflX; 99.9 1.2E-25 3E-30 197.8 10.6 224 144-376 123-375 (426)
34 TIGR03598 GTPase_YsxC ribosome 99.9 4.3E-26 1.1E-30 200.9 6.2 133 217-352 16-179 (179)
35 PRK04213 GTP-binding protein; 99.9 2.3E-25 5.8E-30 195.8 8.4 140 220-365 2-186 (195)
36 COG2262 HflX GTPases [General 99.9 3E-24 7.7E-29 188.0 10.0 186 186-374 156-367 (411)
37 TIGR00437 feoB ferrous iron tr 99.9 1.5E-22 3.8E-27 176.3 7.4 138 226-364 1-157 (733)
38 PRK09554 feoB ferrous iron tra 99.9 2.8E-21 7.2E-26 167.4 13.3 142 218-362 2-167 (772)
39 pfam10662 PduV-EutP Ethanolami 99.9 1.4E-22 3.5E-27 176.5 6.6 123 221-360 3-143 (143)
40 COG1084 Predicted GTPase [Gene 99.9 1.6E-20 4E-25 162.2 13.0 201 123-361 106-334 (346)
41 cd04171 SelB SelB subfamily. 99.8 6.3E-21 1.6E-25 165.0 7.7 132 221-360 2-163 (164)
42 COG0370 FeoB Fe2+ transport sy 99.8 3.4E-20 8.6E-25 160.0 11.3 144 220-366 4-167 (653)
43 pfam00009 GTP_EFTU Elongation 99.8 8.4E-21 2.1E-25 164.1 7.4 136 220-363 4-184 (185)
44 PRK12299 obgE GTPase ObgE; Rev 99.8 2.6E-20 6.6E-25 160.8 7.2 144 220-365 159-329 (334)
45 KOG1423 consensus 99.8 1.7E-19 4.4E-24 155.1 8.7 156 220-375 73-283 (379)
46 cd01887 IF2_eIF5B IF2/eIF5B (i 99.8 1.4E-19 3.5E-24 155.7 8.1 135 220-363 1-166 (168)
47 cd00881 GTP_translation_factor 99.8 8E-19 2.1E-23 150.4 7.6 136 221-364 1-188 (189)
48 PRK12298 obgE GTPase ObgE; Rev 99.7 3.5E-18 8.8E-23 146.0 7.5 145 220-366 160-336 (380)
49 pfam01926 MMR_HSR1 GTPase of u 99.7 2.3E-18 5.8E-23 147.2 5.9 98 231-328 1-106 (106)
50 KOG0410 consensus 99.7 2.9E-17 7.4E-22 139.6 11.0 228 138-373 98-351 (410)
51 PRK12297 obgE GTPase ObgE; Rev 99.7 5E-18 1.3E-22 144.9 6.2 144 220-365 159-331 (429)
52 COG1163 DRG Predicted GTPase [ 99.7 4.8E-18 1.2E-22 145.0 5.2 142 217-363 60-289 (365)
53 cd01849 YlqF_related_GTPase Yl 99.7 4.8E-18 1.2E-22 145.0 4.8 61 214-277 95-155 (155)
54 PRK12296 obgE GTPase ObgE; Rev 99.7 2.3E-17 5.9E-22 140.3 7.2 144 220-365 160-342 (495)
55 cd04154 Arl2 Arl2 subfamily. 99.7 6.1E-17 1.6E-21 137.3 8.4 140 209-360 4-172 (173)
56 cd01858 NGP_1 NGP-1. Autoanti 99.7 3.6E-17 9.3E-22 138.9 4.9 57 218-277 101-157 (157)
57 cd01856 YlqF YlqF. Proteins o 99.7 3.4E-17 8.7E-22 139.1 4.5 59 216-277 112-170 (171)
58 pfam00025 Arf ADP-ribosylation 99.7 4.3E-16 1.1E-20 131.5 9.0 134 216-361 11-173 (174)
59 cd04155 Arl3 Arl3 subfamily. 99.7 3.8E-16 9.6E-21 131.8 8.2 135 214-360 9-172 (173)
60 KOG1489 consensus 99.7 1.2E-16 3.1E-21 135.3 5.3 142 218-361 195-365 (366)
61 COG0218 Predicted GTPase [Gene 99.6 5.8E-16 1.5E-20 130.6 8.5 144 218-364 23-198 (200)
62 TIGR02729 Obg_CgtA GTP-binding 99.6 1.5E-16 3.7E-21 134.7 5.3 112 220-333 159-296 (296)
63 cd01859 MJ1464 MJ1464. This f 99.6 1.1E-16 2.8E-21 135.5 4.0 57 218-277 100-156 (156)
64 pfam00071 Ras Ras family. Incl 99.6 4.9E-15 1.2E-19 124.1 8.6 133 221-362 1-160 (162)
65 cd01857 HSR1_MMR1 HSR1/MMR1. 99.6 7.6E-16 1.9E-20 129.8 4.0 57 218-277 82-138 (141)
66 COG0536 Obg Predicted GTPase [ 99.6 2.2E-15 5.6E-20 126.6 6.2 143 221-365 161-335 (369)
67 cd00878 Arf_Arl Arf (ADP-ribos 99.6 5.6E-15 1.4E-19 123.7 8.1 128 221-360 1-157 (158)
68 TIGR03596 GTPase_YlqF ribosome 99.6 3.1E-15 8E-20 125.5 4.7 60 217-279 116-175 (276)
69 cd00876 Ras Ras family. The R 99.6 2.3E-14 5.9E-19 119.4 8.7 131 221-361 1-159 (160)
70 cd04178 Nucleostemin_like Nucl 99.6 3.3E-15 8.5E-20 125.3 4.4 69 206-277 104-172 (172)
71 cd04160 Arfrp1 Arfrp1 subfamil 99.5 1.7E-14 4.5E-19 120.3 7.5 132 221-360 1-166 (167)
72 cd00154 Rab Rab family. Rab G 99.5 3.6E-14 9.2E-19 118.1 8.8 131 220-360 1-159 (159)
73 cd04159 Arl10_like Arl10-like 99.5 3E-14 7.7E-19 118.6 8.2 128 221-360 1-158 (159)
74 PTZ00133 ADP-ribosylation fact 99.5 4.7E-14 1.2E-18 117.3 8.8 137 217-365 15-180 (182)
75 PRK09563 rbgA ribosomal biogen 99.5 1.5E-14 3.9E-19 120.7 6.2 61 216-279 118-178 (282)
76 cd04156 ARLTS1 ARLTS1 subfamil 99.5 4.8E-14 1.2E-18 117.3 8.3 128 221-360 1-159 (160)
77 smart00177 ARF ARF-like small 99.5 5.2E-14 1.3E-18 117.0 8.2 135 217-363 11-174 (175)
78 cd04139 RalA_RalB RalA/RalB su 99.5 7.1E-14 1.8E-18 116.1 8.8 134 220-363 1-162 (164)
79 cd04153 Arl5_Arl8 Arl5/Arl8 su 99.5 5E-14 1.3E-18 117.1 7.5 132 217-360 13-173 (174)
80 smart00173 RAS Ras subfamily o 99.5 1.1E-13 2.8E-18 114.8 9.1 135 220-364 1-163 (164)
81 cd04152 Arl4_Arl7 Arl4/Arl7 su 99.5 1.4E-13 3.5E-18 114.1 9.5 138 218-365 2-172 (183)
82 cd04112 Rab26 Rab26 subfamily. 99.5 1.8E-13 4.6E-18 113.3 9.6 137 220-365 1-165 (191)
83 cd01892 Miro2 Miro2 subfamily. 99.5 1.5E-13 3.8E-18 113.8 8.8 139 217-363 2-166 (169)
84 cd01890 LepA LepA subfamily. 99.5 9.2E-14 2.3E-18 115.3 7.3 135 221-364 2-178 (179)
85 cd04101 RabL4 RabL4 (Rab-like4 99.5 2.3E-13 5.9E-18 112.5 9.2 135 220-362 1-163 (164)
86 cd04137 RheB Rheb (Ras Homolog 99.5 3.3E-13 8.5E-18 111.4 9.6 135 221-365 3-165 (180)
87 COG0012 Predicted GTPase, prob 99.5 8.3E-13 2.1E-17 108.6 11.5 94 219-314 2-113 (372)
88 cd04136 Rap_like Rap-like subf 99.5 2.1E-13 5.5E-18 112.7 8.2 133 220-362 2-162 (163)
89 cd04118 Rab24 Rab24 subfamily. 99.5 3.8E-13 9.7E-18 111.0 9.4 137 220-365 1-168 (193)
90 cd01862 Rab7 Rab7 subfamily. 99.5 4.8E-13 1.2E-17 110.3 9.6 135 220-364 1-168 (172)
91 cd04176 Rap2 Rap2 subgroup. T 99.5 3.3E-13 8.3E-18 111.5 8.6 133 220-362 2-162 (163)
92 cd04125 RabA_like RabA-like su 99.5 5.1E-13 1.3E-17 110.1 9.4 139 220-368 1-167 (188)
93 PRK09601 translation-associate 99.5 1.2E-12 3.1E-17 107.5 11.3 91 219-311 2-109 (364)
94 COG1161 Predicted GTPases [Gen 99.4 7.8E-14 2E-18 115.8 4.7 63 215-280 128-190 (322)
95 cd04113 Rab4 Rab4 subfamily. 99.4 4.8E-13 1.2E-17 110.3 8.8 132 220-361 1-160 (161)
96 cd04114 Rab30 Rab30 subfamily. 99.4 5.3E-13 1.4E-17 110.0 8.9 134 220-362 8-168 (169)
97 smart00175 RAB Rab subfamily o 99.4 5.8E-13 1.5E-17 109.8 9.0 134 220-363 1-162 (164)
98 cd04177 RSR1 RSR1 subgroup. R 99.4 5.3E-13 1.4E-17 110.0 8.5 134 220-363 2-164 (168)
99 cd04145 M_R_Ras_like M-Ras/R-R 99.4 5.6E-13 1.4E-17 109.8 8.5 133 220-362 3-163 (164)
100 KOG1490 consensus 99.4 8.1E-14 2.1E-18 115.7 4.2 143 218-364 167-351 (620)
101 cd01893 Miro1 Miro1 subfamily. 99.4 6.8E-13 1.7E-17 109.2 8.9 132 220-362 1-163 (166)
102 cd04158 ARD1 ARD1 subfamily. 99.4 6.8E-13 1.7E-17 109.3 8.8 132 221-364 1-162 (169)
103 cd04150 Arf1_5_like Arf1-Arf5- 99.4 5.6E-13 1.4E-17 109.8 8.2 128 220-359 1-157 (159)
104 cd04123 Rab21 Rab21 subfamily. 99.4 5.4E-13 1.4E-17 109.9 8.1 133 220-362 1-161 (162)
105 cd04117 Rab15 Rab15 subfamily. 99.4 6.8E-13 1.7E-17 109.2 8.6 133 220-362 1-161 (161)
106 cd04138 H_N_K_Ras_like H-Ras/N 99.4 6.6E-13 1.7E-17 109.3 8.5 133 220-362 2-161 (162)
107 cd00882 Ras_like_GTPase Ras-li 99.4 3.3E-13 8.5E-18 111.4 6.9 127 224-359 1-156 (157)
108 cd01867 Rab8_Rab10_Rab13_like 99.4 1.2E-12 3E-17 107.6 9.5 134 220-363 4-165 (167)
109 cd01863 Rab18 Rab18 subfamily. 99.4 6.1E-13 1.6E-17 109.6 8.0 133 220-362 1-161 (161)
110 cd04151 Arl1 Arl1 subfamily. 99.4 5.5E-13 1.4E-17 109.9 7.7 127 221-359 1-156 (158)
111 cd04146 RERG_RasL11_like RERG/ 99.4 6.5E-13 1.7E-17 109.4 8.0 134 221-363 1-164 (165)
112 PRK09602 translation-associate 99.4 3.1E-13 8E-18 111.6 6.3 89 219-309 2-114 (396)
113 cd04148 RGK RGK subfamily. Th 99.4 1.4E-12 3.6E-17 107.1 9.6 134 220-363 1-163 (221)
114 cd04147 Ras_dva Ras-dva subfam 99.4 9.4E-13 2.4E-17 108.3 8.7 135 221-365 1-165 (198)
115 cd01869 Rab1_Ypt1 Rab1/Ypt1 su 99.4 1.3E-12 3.4E-17 107.2 9.2 135 220-364 3-165 (166)
116 cd04175 Rap1 Rap1 subgroup. T 99.4 9E-13 2.3E-17 108.4 8.3 134 220-363 2-163 (164)
117 cd04124 RabL2 RabL2 subfamily. 99.4 1.3E-12 3.3E-17 107.3 9.2 134 220-363 1-158 (161)
118 cd04122 Rab14 Rab14 subfamily. 99.4 8.6E-13 2.2E-17 108.5 8.1 134 220-363 3-164 (166)
119 cd04142 RRP22 RRP22 subfamily. 99.4 1.8E-12 4.7E-17 106.3 9.8 146 220-367 1-178 (198)
120 cd04127 Rab27A Rab27a subfamil 99.4 1.4E-12 3.5E-17 107.1 9.1 135 220-364 5-178 (180)
121 cd04110 Rab35 Rab35 subfamily. 99.4 1E-12 2.6E-17 108.1 8.3 136 219-364 6-168 (199)
122 cd01861 Rab6 Rab6 subfamily. 99.4 1.1E-12 2.9E-17 107.7 8.6 133 220-362 1-161 (161)
123 cd04149 Arf6 Arf6 subfamily. 99.4 7.2E-13 1.8E-17 109.1 7.5 131 217-359 7-166 (168)
124 cd04121 Rab40 Rab40 subfamily. 99.4 2.2E-12 5.7E-17 105.7 10.0 136 220-365 7-169 (189)
125 cd04116 Rab9 Rab9 subfamily. 99.4 9.8E-13 2.5E-17 108.2 8.2 133 219-361 5-169 (170)
126 cd04141 Rit_Rin_Ric Rit/Rin/Ri 99.4 1.2E-12 3.1E-17 107.5 8.6 136 220-365 3-166 (172)
127 cd04144 Ras2 Ras2 subfamily. 99.4 1.8E-12 4.5E-17 106.4 9.4 135 221-365 1-165 (190)
128 cd01860 Rab5_related Rab5-rela 99.4 1.2E-12 3.1E-17 107.5 8.5 133 220-362 2-162 (163)
129 COG3596 Predicted GTPase [Gene 99.4 4.6E-12 1.2E-16 103.5 11.3 147 217-364 37-223 (296)
130 cd01868 Rab11_like Rab11-like. 99.4 1.6E-12 4E-17 106.7 8.8 133 220-362 4-164 (165)
131 cd04157 Arl6 Arl6 subfamily. 99.4 1.1E-12 2.7E-17 107.9 7.9 129 221-359 1-160 (162)
132 cd04128 Spg1 Spg1p. Spg1p (se 99.4 2E-12 5.1E-17 106.0 9.2 135 220-364 1-167 (182)
133 cd01866 Rab2 Rab2 subfamily. 99.4 2E-12 5.2E-17 106.0 9.2 134 220-363 5-166 (168)
134 PTZ00132 GTP-binding nuclear p 99.4 1.6E-12 4.1E-17 106.7 8.6 137 219-365 6-167 (209)
135 cd04119 RJL RJL (RabJ-Like) su 99.4 1.5E-12 3.9E-17 106.8 8.4 133 220-362 1-166 (168)
136 cd04120 Rab12 Rab12 subfamily. 99.4 2.4E-12 6.1E-17 105.5 9.3 137 220-366 1-166 (202)
137 cd04140 ARHI_like ARHI subfami 99.4 1.4E-12 3.5E-17 107.2 8.0 132 220-361 2-163 (165)
138 cd01855 YqeH YqeH. YqeH is an 99.4 3.9E-13 1E-17 110.9 5.0 57 218-277 126-190 (190)
139 cd04108 Rab36_Rab34 Rab34/Rab3 99.4 1.9E-12 4.9E-17 106.1 8.5 134 220-363 1-165 (170)
140 cd00879 Sar1 Sar1 subfamily. 99.4 1.6E-12 4E-17 106.7 8.0 133 217-361 17-189 (190)
141 cd00877 Ran Ran (Ras-related n 99.4 3.2E-12 8.1E-17 104.6 9.5 134 220-364 1-160 (166)
142 cd00157 Rho Rho (Ras homology) 99.4 1.1E-12 2.8E-17 107.8 7.0 131 220-360 1-170 (171)
143 cd01864 Rab19 Rab19 subfamily. 99.4 1.7E-12 4.4E-17 106.4 7.9 132 220-361 4-164 (165)
144 cd04107 Rab32_Rab38 Rab38/Rab3 99.4 3.7E-12 9.4E-17 104.2 9.3 135 220-364 1-169 (201)
145 cd01865 Rab3 Rab3 subfamily. 99.4 3E-12 7.7E-17 104.8 8.7 134 220-363 2-163 (165)
146 cd04143 Rhes_like Rhes_like su 99.4 2.5E-12 6.3E-17 105.4 7.9 134 220-363 1-171 (247)
147 cd04132 Rho4_like Rho4-like su 99.4 5.2E-12 1.3E-16 103.1 9.4 135 221-365 2-169 (187)
148 cd04106 Rab23_lke Rab23-like s 99.4 3.2E-12 8.3E-17 104.6 8.1 132 220-361 1-161 (162)
149 cd04111 Rab39 Rab39 subfamily. 99.4 4.6E-12 1.2E-16 103.5 8.7 137 220-366 3-169 (211)
150 cd01900 YchF YchF subfamily. 99.4 6.4E-12 1.6E-16 102.5 9.4 89 222-312 1-106 (274)
151 cd04109 Rab28 Rab28 subfamily. 99.3 5.2E-12 1.3E-16 103.1 8.8 135 220-364 1-167 (215)
152 cd04115 Rab33B_Rab33A Rab33B/R 99.3 6.5E-12 1.6E-16 102.5 9.2 135 220-363 3-169 (170)
153 cd04134 Rho3 Rho3 subfamily. 99.3 8.5E-12 2.2E-16 101.6 9.5 137 221-367 2-178 (189)
154 TIGR01393 lepA GTP-binding pro 99.3 1.9E-12 4.7E-17 106.2 5.9 140 222-370 6-188 (598)
155 cd01870 RhoA_like RhoA-like su 99.3 7.1E-12 1.8E-16 102.2 8.8 133 220-362 2-174 (175)
156 cd04133 Rop_like Rop subfamily 99.3 8.6E-12 2.2E-16 101.6 9.2 134 220-363 2-173 (176)
157 PTZ00258 GTP-binding protein; 99.3 8.3E-12 2.1E-16 101.7 9.1 92 218-311 21-129 (392)
158 cd04135 Tc10 TC10 subfamily. 99.3 9.6E-12 2.4E-16 101.3 9.1 132 220-361 1-172 (174)
159 smart00178 SAR Sar1p-like memb 99.3 7.4E-12 1.9E-16 102.0 8.6 133 217-361 15-183 (184)
160 cd01875 RhoG RhoG subfamily. 99.3 9.2E-12 2.4E-16 101.4 9.0 139 219-367 3-181 (191)
161 cd01871 Rac1_like Rac1-like su 99.3 7.3E-12 1.9E-16 102.1 8.4 132 220-361 2-173 (174)
162 cd01889 SelB_euk SelB subfamil 99.3 6.7E-12 1.7E-16 102.4 7.8 137 220-364 1-187 (192)
163 cd04126 Rab20 Rab20 subfamily. 99.3 1.3E-11 3.3E-16 100.3 9.0 132 220-364 1-191 (220)
164 PRK12312 infB translation init 99.3 2.1E-12 5.2E-17 105.9 4.8 134 217-360 115-276 (610)
165 smart00174 RHO Rho (Ras homolo 99.3 1.2E-11 3.2E-16 100.5 8.4 131 222-362 1-171 (174)
166 cd04130 Wrch_1 Wrch-1 subfamil 99.3 1.1E-11 2.9E-16 100.8 7.6 130 220-359 1-170 (173)
167 cd01874 Cdc42 Cdc42 subfamily. 99.3 2.7E-11 7E-16 98.1 9.3 132 220-361 2-173 (175)
168 cd01891 TypA_BipA TypA (tyrosi 99.3 1.4E-11 3.6E-16 100.1 7.7 135 221-363 4-192 (194)
169 cd04129 Rho2 Rho2 subfamily. 99.3 1.8E-11 4.7E-16 99.3 7.5 135 220-364 2-174 (187)
170 cd04162 Arl9_Arfrp2_like Arl9/ 99.3 3.1E-11 7.8E-16 97.8 8.5 133 221-365 1-161 (164)
171 TIGR03597 GTPase_YqeH ribosome 99.2 6E-12 1.5E-16 102.7 4.4 61 217-280 152-217 (360)
172 TIGR00436 era GTP-binding prot 99.2 3.1E-11 8E-16 97.7 7.8 155 221-375 2-182 (278)
173 cd04131 Rnd Rnd subfamily. Th 99.2 7.2E-11 1.8E-15 95.2 9.4 133 220-362 2-175 (178)
174 cd01899 Ygr210 Ygr210 subfamil 99.2 1.5E-11 3.8E-16 100.0 5.5 86 222-309 1-110 (318)
175 cd04161 Arl2l1_Arl13_like Arl2 99.2 3.8E-11 9.7E-16 97.1 7.3 123 221-356 1-162 (167)
176 cd04103 Centaurin_gamma Centau 99.2 4.7E-11 1.2E-15 96.5 7.2 126 220-361 1-157 (158)
177 PRK05306 infB translation init 99.2 5.9E-11 1.5E-15 95.8 7.7 138 213-360 335-501 (839)
178 PRK13796 GTP-binding protein Y 99.2 1.4E-11 3.7E-16 100.1 4.4 62 216-280 159-225 (367)
179 pfam03308 ArgK ArgK protein. T 99.2 4.5E-11 1.1E-15 96.6 6.8 159 218-391 28-255 (267)
180 CHL00189 infB translation init 99.2 7.9E-11 2E-15 94.9 7.7 138 213-360 266-435 (770)
181 TIGR00231 small_GTP small GTP- 99.2 3.5E-11 9E-16 97.3 5.8 140 219-358 3-184 (186)
182 KOG1486 consensus 99.1 4E-11 1E-15 97.0 4.6 146 215-363 57-288 (364)
183 cd04173 Rnd2_Rho7 Rnd2/Rho7 su 99.1 3.6E-10 9.1E-15 90.4 9.2 133 220-362 2-175 (222)
184 TIGR00092 TIGR00092 GTP-bindin 99.1 4.8E-10 1.2E-14 89.5 9.8 190 219-422 2-211 (390)
185 cd01888 eIF2_gamma eIF2-gamma 99.1 2E-10 5.1E-15 92.1 7.8 137 220-364 1-200 (203)
186 cd04174 Rnd1_Rho6 Rnd1/Rho6 su 99.1 4.5E-10 1.2E-14 89.7 9.6 138 219-366 13-191 (232)
187 smart00176 RAN Ran (Ras-relate 99.1 2.1E-10 5.5E-15 91.9 7.8 130 225-364 1-155 (200)
188 PRK09435 arginine/ornithine tr 99.1 2.6E-10 6.6E-15 91.4 8.0 159 219-392 49-279 (325)
189 cd04172 Rnd3_RhoE_Rho8 Rnd3/Rh 99.1 3.5E-10 8.9E-15 90.5 8.5 132 220-361 6-178 (182)
190 PRK05433 GTP-binding protein L 99.1 3.2E-10 8.1E-15 90.7 7.8 140 221-369 9-190 (601)
191 KOG1424 consensus 99.1 6.9E-11 1.8E-15 95.3 3.0 65 211-278 306-370 (562)
192 KOG1491 consensus 99.0 2.2E-10 5.7E-15 91.8 4.7 94 218-313 19-129 (391)
193 PRK04004 translation initiatio 99.0 1.1E-09 2.8E-14 86.9 7.9 133 216-361 3-215 (592)
194 cd01873 RhoBTB RhoBTB subfamil 99.0 9E-10 2.3E-14 87.6 7.1 131 219-360 2-193 (195)
195 pfam00350 Dynamin_N Dynamin fa 99.0 7.5E-10 1.9E-14 88.2 6.4 103 222-329 1-168 (168)
196 pfam08477 Miro Miro-like prote 99.0 1.2E-09 2.9E-14 86.8 7.2 102 221-330 1-118 (118)
197 KOG0462 consensus 99.0 5.7E-10 1.5E-14 88.9 5.3 144 221-372 62-244 (650)
198 cd01884 EF_Tu EF-Tu subfamily. 99.0 1.5E-09 3.8E-14 86.1 7.0 106 220-333 3-132 (195)
199 cd01853 Toc34_like Toc34-like 99.0 1.5E-09 3.9E-14 86.0 6.6 122 216-337 28-167 (249)
200 TIGR00650 MG442 GTP-binding co 98.9 3.5E-10 8.8E-15 90.5 2.6 52 225-276 1-123 (123)
201 COG1703 ArgK Putative periplas 98.9 8.5E-09 2.2E-13 80.8 9.6 196 220-435 52-320 (323)
202 COG1100 GTPase SAR1 and relate 98.9 3.4E-09 8.7E-14 83.6 7.6 103 220-335 6-127 (219)
203 cd04168 TetM_like Tet(M)-like 98.9 2.2E-08 5.6E-13 78.0 11.7 104 221-334 1-131 (237)
204 KOG0078 consensus 98.9 7.1E-09 1.8E-13 81.4 8.9 139 215-364 8-175 (207)
205 KOG2484 consensus 98.9 5.8E-10 1.5E-14 88.9 2.8 74 202-278 235-308 (435)
206 cd01883 EF1_alpha Eukaryotic e 98.9 3.6E-09 9.2E-14 83.4 6.8 105 221-333 1-151 (219)
207 KOG0092 consensus 98.9 2.2E-09 5.7E-14 84.9 5.4 138 220-368 6-172 (200)
208 TIGR00475 selB selenocysteine- 98.9 7.7E-09 2E-13 81.1 8.1 138 221-366 2-175 (627)
209 PRK12317 elongation factor 1-a 98.9 4.6E-09 1.2E-13 82.7 6.3 110 218-335 6-156 (426)
210 PRK10218 GTP-binding protein; 98.9 1.4E-08 3.6E-13 79.3 8.6 137 221-365 7-197 (607)
211 KOG1145 consensus 98.9 2.7E-08 6.8E-13 77.4 9.7 138 215-362 149-315 (683)
212 cd04166 CysN_ATPS CysN_ATPS su 98.9 4.4E-09 1.1E-13 82.8 5.4 109 221-337 1-148 (208)
213 cd04165 GTPBP1_like GTPBP1-lik 98.8 1.2E-08 3.2E-13 79.7 7.6 106 221-334 1-153 (224)
214 KOG2485 consensus 98.8 5.5E-09 1.4E-13 82.1 5.7 65 216-280 140-209 (335)
215 cd04102 RabL3 RabL3 (Rab-like3 98.8 2.9E-08 7.5E-13 77.1 9.3 109 220-336 1-146 (202)
216 KOG0073 consensus 98.8 4.1E-08 1E-12 76.1 9.4 129 219-360 16-179 (185)
217 KOG0084 consensus 98.8 2.5E-08 6.3E-13 77.6 8.2 137 219-366 9-175 (205)
218 cd04105 SR_beta Signal recogni 98.8 3.6E-08 9.2E-13 76.5 8.9 109 220-338 1-128 (203)
219 cd04169 RF3 RF3 subfamily. Pe 98.8 1.8E-08 4.6E-13 78.6 7.0 106 221-334 4-138 (267)
220 KOG2423 consensus 98.8 3E-09 7.5E-14 84.0 3.0 59 217-278 305-363 (572)
221 KOG0094 consensus 98.8 1.8E-08 4.6E-13 78.5 6.9 138 218-365 21-187 (221)
222 cd04170 EF-G_bact Elongation f 98.8 2.4E-08 6.1E-13 77.7 7.4 105 221-335 1-132 (268)
223 pfam04548 AIG1 AIG1 family. Ar 98.8 1.1E-07 2.9E-12 73.0 10.8 116 220-335 1-132 (200)
224 cd01886 EF-G Elongation factor 98.8 2.5E-08 6.3E-13 77.6 7.4 105 221-335 1-132 (270)
225 COG0481 LepA Membrane GTPase L 98.8 9.4E-09 2.4E-13 80.5 5.2 141 221-369 11-192 (603)
226 PTZ00141 elongation factor 1 a 98.8 2.1E-08 5.3E-13 78.1 7.0 111 217-335 5-161 (443)
227 TIGR02528 EutP ethanolamine ut 98.8 7.7E-09 2E-13 81.1 4.4 122 221-359 2-143 (144)
228 cd04104 p47_IIGP_like p47 (47- 98.8 7.1E-08 1.8E-12 74.4 9.2 107 220-332 2-120 (197)
229 PRK04000 translation initiatio 98.8 1.5E-08 3.9E-13 79.1 5.7 139 219-365 8-202 (410)
230 PRK12736 elongation factor Tu; 98.8 2E-08 5.2E-13 78.2 6.2 109 217-333 10-142 (394)
231 PRK12735 elongation factor Tu; 98.8 4.8E-08 1.2E-12 75.6 8.1 109 217-333 10-142 (396)
232 COG0532 InfB Translation initi 98.7 2.9E-08 7.4E-13 77.1 6.5 133 219-361 5-168 (509)
233 PRK00741 prfC peptide chain re 98.7 9.1E-08 2.3E-12 73.7 8.8 107 220-334 11-146 (526)
234 PTZ00336 elongation factor 1-a 98.7 4.3E-08 1.1E-12 76.0 7.0 105 218-330 6-156 (449)
235 PRK00049 elongation factor Tu; 98.7 7.1E-08 1.8E-12 74.4 7.7 109 217-333 10-143 (397)
236 pfam09439 SRPRB Signal recogni 98.7 6.1E-08 1.6E-12 74.9 7.1 111 219-338 3-131 (181)
237 PRK13351 elongation factor G; 98.7 1.8E-06 4.5E-11 64.8 14.2 104 221-334 10-140 (687)
238 TIGR00750 lao LAO/AO transport 98.7 7.1E-08 1.8E-12 74.4 6.7 156 220-390 39-292 (333)
239 KOG0395 consensus 98.6 3E-08 7.6E-13 77.1 4.5 135 220-364 4-166 (196)
240 TIGR01394 TypA_BipA GTP-bindin 98.6 5.3E-08 1.4E-12 75.3 5.6 143 221-373 3-212 (609)
241 PRK12739 elongation factor G; 98.6 2.5E-06 6.4E-11 63.7 13.8 105 221-333 12-141 (693)
242 PRK05124 cysN sulfate adenylyl 98.6 7.7E-08 2E-12 74.2 5.7 128 217-352 25-214 (475)
243 PRK05506 bifunctional sulfate 98.6 4.2E-08 1.1E-12 76.0 4.3 129 217-353 5-194 (613)
244 cd01885 EF2 EF2 (for archaea a 98.6 1E-07 2.7E-12 73.3 6.2 104 221-332 2-138 (222)
245 KOG0394 consensus 98.6 1.1E-07 2.9E-12 73.0 6.0 130 219-362 9-177 (210)
246 CHL00071 tufA elongation facto 98.6 1.6E-07 4E-12 72.0 6.7 110 216-333 9-142 (409)
247 KOG2486 consensus 98.6 9.5E-08 2.4E-12 73.6 5.4 141 219-362 136-315 (320)
248 PRK07560 elongation factor EF- 98.6 7.1E-07 1.8E-11 67.5 9.7 104 221-332 22-152 (730)
249 COG1217 TypA Predicted membran 98.5 4.4E-07 1.1E-11 68.9 7.4 142 221-370 7-202 (603)
250 KOG0098 consensus 98.5 5.9E-07 1.5E-11 68.1 8.0 133 219-362 6-167 (216)
251 COG1162 Predicted GTPases [Gen 98.5 3.1E-07 8E-12 70.0 6.3 78 219-299 164-249 (301)
252 PRK00007 elongation factor G; 98.5 9.3E-06 2.4E-10 59.7 13.5 14 228-241 265-278 (693)
253 pfam00735 Septin Septin. Membe 98.5 6E-07 1.5E-11 68.0 7.3 116 220-335 5-157 (280)
254 COG5256 TEF1 Translation elong 98.5 1.6E-07 4.1E-12 72.0 4.3 108 219-334 7-160 (428)
255 COG3276 SelB Selenocysteine-sp 98.5 5.3E-07 1.3E-11 68.4 6.9 135 221-363 2-162 (447)
256 PRK01889 ribosome-associated G 98.5 3.2E-07 8.1E-12 69.9 5.7 79 215-297 190-276 (353)
257 KOG0448 consensus 98.5 9.1E-07 2.3E-11 66.7 8.0 113 216-334 106-276 (749)
258 KOG0070 consensus 98.5 1.9E-07 5E-12 71.4 4.6 134 218-364 16-179 (181)
259 PTZ00099 rab6; Provisional 98.4 3.8E-07 9.6E-12 69.4 5.5 102 256-365 16-144 (176)
260 PRK13768 GTPase; Provisional 98.4 4.4E-07 1.1E-11 69.0 5.6 112 220-335 3-178 (253)
261 KOG0075 consensus 98.4 1.9E-07 4.9E-12 71.4 3.7 139 214-363 15-182 (186)
262 cd04167 Snu114p Snu114p subfam 98.4 6.1E-07 1.6E-11 67.9 5.8 104 221-332 2-136 (213)
263 KOG1707 consensus 98.4 1.6E-06 4.2E-11 65.0 8.0 136 214-363 420-583 (625)
264 pfam03193 DUF258 Protein of un 98.4 6.5E-07 1.7E-11 67.8 5.0 78 219-299 35-120 (161)
265 cd01854 YjeQ_engC YjeQ/EngC. 98.3 6.1E-07 1.5E-11 68.0 4.7 77 219-298 161-245 (287)
266 KOG1487 consensus 98.3 5.2E-07 1.3E-11 68.4 4.3 143 215-363 54-281 (358)
267 PRK00098 ribosome-associated G 98.3 6.4E-07 1.6E-11 67.8 4.8 76 219-298 164-247 (298)
268 PTZ00327 eukaryotic translatio 98.3 2.3E-06 5.9E-11 63.9 7.6 138 220-365 38-238 (460)
269 KOG0458 consensus 98.3 6.5E-07 1.7E-11 67.7 4.3 112 218-337 176-333 (603)
270 cd01850 CDC_Septin CDC/Septin. 98.3 2.5E-06 6.4E-11 63.7 6.8 114 220-335 5-159 (276)
271 PRK12288 ribosome-associated G 98.3 1.5E-06 3.7E-11 65.3 4.9 75 219-296 207-289 (344)
272 cd01856 YlqF YlqF. Proteins o 98.2 1.3E-06 3.3E-11 65.6 4.6 78 287-364 8-102 (171)
273 cd01852 AIG1 AIG1 (avrRpt2-ind 98.2 1.6E-06 4.2E-11 65.0 5.1 116 220-335 1-132 (196)
274 KOG0087 consensus 98.2 2.9E-06 7.3E-11 63.3 6.3 134 216-360 11-173 (222)
275 PRK12289 ribosome-associated G 98.2 1.8E-06 4.5E-11 64.7 5.0 77 216-296 169-252 (351)
276 pfam05049 IIGP Interferon-indu 98.2 1.1E-05 2.8E-10 59.3 8.9 107 219-331 35-153 (375)
277 KOG0080 consensus 98.2 5.4E-06 1.4E-10 61.4 7.4 133 219-362 11-173 (209)
278 cd03114 ArgK-like The function 98.2 1.9E-06 4.8E-11 64.6 4.9 98 222-330 2-148 (148)
279 COG2229 Predicted GTPase [Gene 98.2 6.6E-06 1.7E-10 60.8 7.6 135 218-361 9-176 (187)
280 PRK12740 elongation factor G; 98.2 9.7E-06 2.5E-10 59.6 8.0 15 227-241 246-260 (670)
281 KOG0079 consensus 98.2 9.7E-06 2.5E-10 59.6 8.0 138 219-365 8-171 (198)
282 KOG0076 consensus 98.2 8.5E-06 2.2E-10 60.0 7.5 139 217-365 15-189 (197)
283 TIGR00491 aIF-2 translation in 98.2 1.6E-06 4.2E-11 65.0 3.8 234 63-364 432-765 (1145)
284 TIGR03348 VI_IcmF type VI secr 98.1 7.9E-05 2E-09 53.3 11.4 118 213-336 105-260 (1169)
285 COG5019 CDC3 Septin family pro 98.1 9.1E-06 2.3E-10 59.8 6.2 121 211-333 13-176 (373)
286 KOG3883 consensus 98.1 2.8E-05 7.1E-10 56.4 8.3 143 215-364 5-176 (198)
287 TIGR00993 3a0901s04IAP86 chlor 98.1 5.8E-06 1.5E-10 61.1 4.7 114 219-333 124-256 (772)
288 TIGR02034 CysN sulfate adenyly 98.1 1.4E-06 3.5E-11 65.5 1.4 120 224-352 5-187 (411)
289 pfam03029 ATP_bind_1 Conserved 98.1 1E-05 2.6E-10 59.5 5.8 106 224-333 1-168 (234)
290 cd01859 MJ1464 MJ1464. This f 98.0 4.7E-06 1.2E-10 61.8 4.0 75 291-365 5-98 (156)
291 KOG0091 consensus 98.0 2.8E-05 7.2E-10 56.4 7.5 135 219-362 8-172 (213)
292 KOG0077 consensus 98.0 4.1E-05 1E-09 55.3 8.1 110 216-337 17-139 (193)
293 KOG0093 consensus 98.0 4.2E-05 1.1E-09 55.2 7.9 135 220-365 22-185 (193)
294 cd01882 BMS1 Bms1. Bms1 is an 98.0 0.0001 2.6E-09 52.5 9.8 102 219-336 39-150 (225)
295 KOG0088 consensus 97.9 8.1E-06 2.1E-10 60.2 3.4 132 219-363 13-175 (218)
296 pfam04670 Gtr1_RagA Gtr1/RagA 97.9 2.7E-05 6.8E-10 56.6 5.9 113 221-336 1-128 (230)
297 COG4917 EutP Ethanolamine util 97.9 1.4E-05 3.6E-10 58.5 4.4 125 221-361 3-144 (148)
298 PRK10463 hydrogenase nickel in 97.9 2.2E-05 5.7E-10 57.1 5.4 143 212-361 96-287 (290)
299 TIGR03596 GTPase_YlqF ribosome 97.9 2.3E-05 5.8E-10 57.0 4.9 76 288-363 11-103 (276)
300 COG0378 HypB Ni2+-binding GTPa 97.8 2.4E-05 6.2E-10 56.9 4.7 139 220-361 14-199 (202)
301 KOG2655 consensus 97.8 3.7E-05 9.4E-10 55.6 5.6 123 212-334 12-173 (366)
302 KOG1144 consensus 97.8 0.0001 2.6E-09 52.6 7.2 139 213-362 470-686 (1064)
303 PRK09563 rbgA ribosomal biogen 97.8 3.4E-05 8.7E-10 55.8 4.6 76 288-363 14-106 (282)
304 KOG0461 consensus 97.8 9.7E-05 2.5E-09 52.7 6.6 144 220-371 8-201 (522)
305 KOG1954 consensus 97.7 4E-05 1E-09 55.4 4.5 112 218-334 57-226 (532)
306 KOG0095 consensus 97.7 0.0002 5E-09 50.5 8.0 136 219-365 7-171 (213)
307 KOG0086 consensus 97.7 0.00014 3.6E-09 51.5 7.2 126 220-355 10-163 (214)
308 COG5257 GCD11 Translation init 97.7 0.0001 2.7E-09 52.4 5.8 142 219-368 10-207 (415)
309 KOG1707 consensus 97.7 0.00028 7.2E-09 49.4 8.0 135 217-361 7-173 (625)
310 COG4108 PrfC Peptide chain rel 97.6 0.00016 4.2E-09 51.1 6.5 105 220-335 13-149 (528)
311 PRK13796 GTP-binding protein Y 97.6 5.3E-05 1.4E-09 54.5 3.9 72 290-361 62-159 (367)
312 smart00053 DYNc Dynamin, GTPas 97.6 0.00023 5.8E-09 50.1 7.0 118 218-335 25-208 (240)
313 COG2895 CysN GTPases - Sulfate 97.6 6.3E-05 1.6E-09 53.9 4.1 127 217-352 4-192 (431)
314 PRK05703 flhF flagellar biosyn 97.6 0.00063 1.6E-08 47.0 9.1 114 217-336 208-362 (412)
315 COG0480 FusA Translation elong 97.6 0.00016 4E-09 51.2 6.0 105 221-335 12-144 (697)
316 PRK09866 hypothetical protein; 97.6 0.00014 3.6E-09 51.5 5.5 63 268-334 231-304 (742)
317 TIGR03597 GTPase_YqeH ribosome 97.6 7.2E-05 1.8E-09 53.6 3.9 73 290-362 54-152 (360)
318 TIGR00483 EF-1_alpha translati 97.6 5.7E-05 1.4E-09 54.3 3.3 115 217-339 5-165 (445)
319 TIGR00073 hypB hydrogenase acc 97.6 8.7E-05 2.2E-09 53.0 4.2 148 208-362 22-222 (225)
320 KOG0447 consensus 97.6 0.009 2.3E-07 39.0 15.1 113 219-335 308-495 (980)
321 PRK11174 cysteine/glutathione 97.5 0.00013 3.3E-09 51.8 4.8 129 216-388 373-501 (588)
322 KOG4252 consensus 97.5 4.6E-05 1.2E-09 54.9 2.4 103 219-336 20-141 (246)
323 TIGR00487 IF-2 translation ini 97.5 0.0002 5.1E-09 50.5 5.6 139 214-361 85-252 (594)
324 PRK11176 lipid transporter ATP 97.5 0.00019 4.9E-09 50.6 5.0 132 215-388 364-495 (581)
325 PRK10790 putative multidrug tr 97.5 0.00034 8.6E-09 48.9 6.1 129 216-388 364-492 (593)
326 TIGR02857 CydD ABC transporter 97.5 0.00064 1.6E-08 47.0 7.5 155 216-416 375-544 (570)
327 PRK12724 flagellar biosynthesi 97.4 0.0022 5.6E-08 43.3 9.9 112 221-336 225-376 (432)
328 cd01855 YqeH YqeH. YqeH is an 97.4 0.00013 3.3E-09 51.8 3.2 71 293-363 28-125 (190)
329 KOG0074 consensus 97.4 0.00034 8.8E-09 48.9 5.3 108 217-337 15-137 (185)
330 KOG1532 consensus 97.4 0.00025 6.3E-09 49.9 4.5 144 215-365 15-266 (366)
331 PRK11160 cysteine/glutathione 97.4 0.00035 8.9E-09 48.8 5.0 54 215-280 363-416 (575)
332 KOG1547 consensus 97.3 0.00085 2.2E-08 46.1 6.8 120 214-333 39-198 (336)
333 COG3523 IcmF Type VI protein s 97.3 0.00027 7E-09 49.6 4.0 139 192-336 98-273 (1188)
334 PRK13657 cyclic beta-1,2-gluca 97.3 0.00042 1.1E-08 48.3 4.5 130 216-388 358-487 (585)
335 KOG1191 consensus 97.3 0.00013 3.4E-09 51.7 2.0 56 221-279 77-132 (531)
336 PRK12723 flagellar biosynthesi 97.3 0.0025 6.4E-08 42.9 8.4 113 221-336 176-329 (388)
337 PRK13579 gcvT glycine cleavage 97.3 0.0047 1.2E-07 41.0 9.8 53 17-69 58-112 (371)
338 TIGR00503 prfC peptide chain r 97.2 0.00054 1.4E-08 47.5 4.9 105 221-336 13-149 (530)
339 PRK10789 putative multidrug tr 97.2 0.00059 1.5E-08 47.2 5.1 52 216-279 338-389 (569)
340 COG2274 SunT ABC-type bacterio 97.2 0.0017 4.2E-08 44.1 7.1 199 143-389 411-626 (709)
341 TIGR03263 guanyl_kin guanylate 97.2 0.00035 8.9E-09 48.8 3.6 57 219-277 1-57 (180)
342 cd01858 NGP_1 NGP-1. Autoanti 97.2 0.00049 1.3E-08 47.8 4.0 70 293-362 3-94 (157)
343 KOG3886 consensus 97.1 0.0026 6.6E-08 42.8 7.5 115 220-337 5-134 (295)
344 TIGR00991 3a0901s02IAP34 GTP-b 97.1 0.00092 2.3E-08 45.9 5.2 102 201-306 23-127 (328)
345 PRK06995 flhF flagellar biosyn 97.1 0.0011 2.9E-08 45.3 5.5 117 216-336 173-328 (404)
346 cd01849 YlqF_related_GTPase Yl 97.1 0.00049 1.3E-08 47.8 3.3 65 300-364 1-86 (155)
347 KOG0097 consensus 97.0 0.003 7.6E-08 42.3 7.1 130 219-362 11-173 (215)
348 PRK11889 flhF flagellar biosyn 97.0 0.0013 3.4E-08 44.8 5.3 115 218-336 240-394 (436)
349 KOG0072 consensus 97.0 0.0015 3.8E-08 44.4 5.5 95 260-363 55-179 (182)
350 KOG0468 consensus 97.0 0.00099 2.5E-08 45.7 4.5 105 220-332 129-262 (971)
351 PTZ00243 ABC transporter; Prov 97.0 0.00076 1.9E-08 46.5 3.8 26 217-242 684-709 (1560)
352 KOG0090 consensus 97.0 0.00045 1.1E-08 48.1 2.5 107 219-338 38-164 (238)
353 cd03249 ABC_MTABC3_MDL1_MDL2 M 97.0 0.00082 2.1E-08 46.2 3.8 51 216-278 26-76 (238)
354 PRK12727 flagellar biosynthesi 97.0 0.0048 1.2E-07 40.9 7.6 118 215-336 344-499 (557)
355 PRK00300 gmk guanylate kinase; 97.0 0.0008 2E-08 46.3 3.5 60 216-277 4-64 (208)
356 PRK00771 signal recognition pa 97.0 0.011 2.7E-07 38.5 9.2 109 199-312 79-221 (433)
357 PRK10867 signal recognition pa 96.9 0.03 7.6E-07 35.4 11.4 113 197-312 76-227 (453)
358 TIGR02204 MsbA_rel ABC transpo 96.9 0.00043 1.1E-08 48.2 1.8 53 215-279 362-414 (576)
359 KOG0071 consensus 96.9 0.0037 9.4E-08 41.7 6.4 127 219-358 17-173 (180)
360 PTZ00265 multidrug resistance 96.9 0.0019 4.8E-08 43.7 4.8 46 343-388 1330-1375(1467)
361 cd03254 ABCC_Glucan_exporter_l 96.9 0.0019 4.9E-08 43.7 4.8 48 216-275 26-73 (229)
362 COG0194 Gmk Guanylate kinase [ 96.9 0.00094 2.4E-08 45.8 3.2 55 218-275 3-57 (191)
363 cd01851 GBP Guanylate-binding 96.8 0.0022 5.7E-08 43.2 5.0 59 221-279 9-72 (224)
364 COG1419 FlhF Flagellar GTP-bin 96.8 0.0072 1.8E-07 39.7 7.5 116 218-335 202-354 (407)
365 KOG0467 consensus 96.8 0.0026 6.7E-08 42.7 5.1 102 221-330 11-135 (887)
366 PRK10416 cell division protein 96.8 0.013 3.4E-07 37.8 8.7 112 219-332 295-453 (499)
367 KOG0054 consensus 96.8 0.0044 1.1E-07 41.2 6.1 28 216-243 544-571 (1381)
368 COG5258 GTPBP1 GTPase [General 96.8 0.0005 1.3E-08 47.7 1.2 136 216-360 114-336 (527)
369 TIGR03375 type_I_sec_LssB type 96.8 0.002 5.2E-08 43.5 4.3 132 215-389 487-618 (694)
370 pfam00493 MCM MCM2/3/5 family. 96.8 0.036 9.2E-07 34.8 10.7 63 211-273 49-121 (327)
371 cd03115 SRP The signal recogni 96.7 0.0049 1.3E-07 40.8 5.9 112 221-335 2-155 (173)
372 PRK10522 multidrug transporter 96.7 0.00075 1.9E-08 46.5 1.6 53 216-280 346-398 (547)
373 pfam00448 SRP54 SRP54-type pro 96.6 0.0038 9.6E-08 41.7 4.9 112 221-335 3-156 (196)
374 KOG0393 consensus 96.6 0.0005 1.3E-08 47.8 0.4 106 219-334 4-124 (198)
375 COG5192 BMS1 GTP-binding prote 96.6 0.0065 1.7E-07 40.0 6.1 17 7-23 70-86 (1077)
376 TIGR03499 FlhF flagellar biosy 96.6 0.011 2.7E-07 38.5 7.1 75 218-304 193-278 (282)
377 PRK12726 flagellar biosynthesi 96.6 0.0093 2.4E-07 38.9 6.7 116 216-334 203-357 (407)
378 cd03245 ABCC_bacteriocin_expor 96.6 0.0031 7.9E-08 42.2 4.3 131 216-389 27-157 (220)
379 cd00071 GMPK Guanosine monopho 96.6 0.0025 6.5E-08 42.8 3.7 54 222-277 2-56 (137)
380 COG4988 CydD ABC-type transpor 96.6 0.0039 9.9E-08 41.6 4.6 30 216-245 344-373 (559)
381 PRK00389 gcvT glycine cleavage 96.5 0.022 5.6E-07 36.3 8.3 74 17-99 49-124 (362)
382 KOG3859 consensus 96.5 0.0089 2.3E-07 39.1 6.3 118 213-333 34-190 (406)
383 cd01857 HSR1_MMR1 HSR1/MMR1. 96.5 0.0013 3.3E-08 44.9 1.9 45 291-335 4-58 (141)
384 cd03248 ABCC_TAP TAP, the Tran 96.5 0.0044 1.1E-07 41.2 4.6 125 216-389 37-167 (226)
385 COG1132 MdlB ABC-type multidru 96.5 0.0016 4.1E-08 44.2 2.3 52 216-279 352-403 (567)
386 cd03251 ABCC_MsbA MsbA is an e 96.5 0.0038 9.6E-08 41.6 4.1 50 216-277 25-74 (234)
387 TIGR01277 thiQ thiamine ABC tr 96.4 0.0019 4.9E-08 43.7 2.3 150 214-419 19-199 (213)
388 COG0541 Ffh Signal recognition 96.4 0.053 1.4E-06 33.7 9.6 132 196-330 75-250 (451)
389 pfam00625 Guanylate_kin Guanyl 96.4 0.0034 8.6E-08 42.0 3.5 54 222-277 4-58 (182)
390 cd03252 ABCC_Hemolysin The ABC 96.4 0.0049 1.3E-07 40.8 4.4 51 216-278 25-75 (237)
391 PRK06731 flhF flagellar biosyn 96.4 0.0046 1.2E-07 41.0 4.2 113 220-335 76-227 (270)
392 KOG1249 consensus 96.3 0.0019 5E-08 43.6 2.0 35 221-255 215-260 (572)
393 COG1618 Predicted nucleotide k 96.3 0.013 3.2E-07 38.0 5.9 139 218-363 4-176 (179)
394 cd03244 ABCC_MRP_domain2 Domai 96.1 0.011 2.7E-07 38.5 4.9 45 216-272 27-71 (221)
395 smart00072 GuKc Guanylate kina 96.1 0.006 1.5E-07 40.2 3.5 55 221-277 4-59 (184)
396 pfam02492 cobW CobW/HypB/UreG, 96.1 0.005 1.3E-07 40.8 3.0 34 221-254 2-40 (174)
397 cd03288 ABCC_SUR2 The SUR doma 96.1 0.011 2.7E-07 38.5 4.6 43 216-270 44-86 (257)
398 cd03289 ABCC_CFTR2 The CFTR su 96.0 0.011 2.7E-07 38.5 4.4 27 216-242 27-53 (275)
399 pfam05783 DLIC Dynein light in 96.0 0.012 3.2E-07 38.0 4.7 33 211-243 37-69 (490)
400 TIGR00955 3a01204 Pigment prec 96.0 0.0066 1.7E-07 40.0 3.2 45 216-269 55-100 (671)
401 PRK11537 putative GTP-binding 95.9 0.02 5.2E-07 36.5 5.6 115 220-335 5-166 (317)
402 KOG0065 consensus 95.9 0.0045 1.1E-07 41.1 2.2 47 214-270 812-858 (1391)
403 COG4987 CydC ABC-type transpor 95.9 0.0035 8.9E-08 41.9 1.6 132 215-389 360-491 (573)
404 cd03246 ABCC_Protease_Secretio 95.9 0.0053 1.3E-07 40.6 2.4 47 216-274 25-71 (173)
405 PRK13695 putative NTPase; Prov 95.9 0.024 6.2E-07 36.0 5.8 24 219-242 3-26 (174)
406 COG1241 MCM2 Predicted ATPase 95.9 0.11 2.7E-06 31.6 9.0 65 210-274 310-384 (682)
407 cd03232 ABC_PDR_domain2 The pl 95.9 0.0063 1.6E-07 40.1 2.7 44 215-268 29-72 (192)
408 COG0404 GcvT Glycine cleavage 95.8 0.06 1.5E-06 33.3 7.7 76 17-101 53-130 (379)
409 TIGR00101 ureG urease accessor 95.8 0.035 8.8E-07 35.0 6.4 116 220-336 2-154 (199)
410 cd03253 ABCC_ATM1_transporter 95.8 0.0054 1.4E-07 40.5 2.2 51 216-278 24-74 (236)
411 COG0050 TufB GTPases - transla 95.7 0.042 1.1E-06 34.4 6.4 108 219-334 12-143 (394)
412 KOG3905 consensus 95.7 0.017 4.3E-07 37.1 4.3 33 211-243 44-76 (473)
413 KOG0083 consensus 95.6 0.02 5.1E-07 36.6 4.5 131 224-364 2-161 (192)
414 cd01130 VirB11-like_ATPase Typ 95.6 0.0093 2.4E-07 38.9 2.8 28 215-242 21-48 (186)
415 KOG0054 consensus 95.6 0.014 3.5E-07 37.8 3.6 43 216-270 1163-1205(1381)
416 TIGR02203 MsbA_lipidA lipid A 95.6 0.042 1.1E-06 34.3 6.0 102 163-278 327-435 (603)
417 cd03369 ABCC_NFT1 Domain 2 of 95.5 0.007 1.8E-07 39.8 1.9 50 216-277 31-80 (207)
418 pfam00503 G-alpha G-protein al 95.5 0.054 1.4E-06 33.6 6.4 129 254-390 177-336 (350)
419 PRK12486 dmdA putative dimethy 95.5 0.053 1.3E-06 33.7 6.3 54 17-70 58-113 (367)
420 PRK13547 hmuV hemin importer A 95.5 0.013 3.2E-07 38.0 3.1 54 216-273 24-77 (273)
421 PRK12289 ribosome-associated G 95.5 0.0053 1.3E-07 40.6 1.1 69 295-363 85-174 (351)
422 cd03112 CobW_like The function 95.5 0.028 7E-07 35.6 4.7 32 221-252 2-37 (158)
423 cd03222 ABC_RNaseL_inhibitor T 95.4 0.044 1.1E-06 34.3 5.7 30 215-244 21-50 (177)
424 cd03291 ABCC_CFTR1 The CFTR su 95.4 0.01 2.7E-07 38.6 2.4 29 215-243 59-87 (282)
425 pfam01571 GCV_T Aminomethyltra 95.4 0.13 3.4E-06 30.9 8.1 76 17-101 4-81 (212)
426 cd03228 ABCC_MRP_Like The MRP 95.3 0.0094 2.4E-07 38.9 2.0 45 216-272 25-69 (171)
427 KOG0081 consensus 95.3 0.051 1.3E-06 33.8 5.6 131 220-363 10-181 (219)
428 pfam05879 RHD3 Root hair defec 95.2 0.048 1.2E-06 33.9 5.4 23 70-92 159-184 (741)
429 TIGR00956 3a01205 Pleiotropic 95.2 0.0046 1.2E-07 41.1 0.2 100 153-268 793-893 (1466)
430 cd00066 G-alpha G protein alph 95.2 0.075 1.9E-06 32.6 6.4 108 253-368 147-281 (317)
431 PRK12288 ribosome-associated G 95.2 0.0075 1.9E-07 39.6 1.1 68 295-362 119-209 (344)
432 KOG0096 consensus 95.1 0.023 6E-07 36.1 3.4 136 219-364 10-170 (216)
433 PRK12486 dmdA putative dimethy 95.1 0.079 2E-06 32.5 6.1 78 18-105 146-223 (367)
434 pfam05621 TniB Bacterial TniB 95.1 0.067 1.7E-06 33.0 5.7 95 195-308 41-153 (302)
435 cd03290 ABCC_SUR1_N The SUR do 95.1 0.015 3.8E-07 37.5 2.4 29 216-244 24-52 (218)
436 pfam02263 GBP Guanylate-bindin 95.1 0.037 9.4E-07 34.8 4.3 58 220-279 22-86 (264)
437 TIGR01192 chvA glucan exporter 95.0 0.014 3.6E-07 37.6 2.2 120 131-271 272-401 (592)
438 KOG1673 consensus 95.0 0.015 3.7E-07 37.6 2.2 109 219-338 20-143 (205)
439 PRK00389 gcvT glycine cleavage 95.0 0.1 2.6E-06 31.7 6.5 81 18-109 140-220 (362)
440 KOG2743 consensus 95.0 0.065 1.7E-06 33.1 5.5 23 220-242 58-80 (391)
441 KOG1249 consensus 95.0 0.0089 2.3E-07 39.0 1.1 62 218-280 308-374 (572)
442 TIGR02868 CydC ABC transporter 95.0 0.015 3.7E-07 37.6 2.2 135 215-389 383-518 (566)
443 cd03110 Fer4_NifH_child This p 95.0 0.072 1.8E-06 32.7 5.7 61 263-334 89-158 (179)
444 PTZ00265 multidrug resistance 94.9 0.039 9.9E-07 34.6 4.2 26 217-242 1193-1218(1467)
445 smart00275 G_alpha G protein a 94.9 0.036 9.1E-07 34.9 4.0 107 253-367 170-302 (342)
446 PRK00098 ribosome-associated G 94.9 0.012 3E-07 38.2 1.6 70 293-362 75-166 (298)
447 cd03234 ABCG_White The White s 94.9 0.017 4.4E-07 37.1 2.3 44 216-268 30-73 (226)
448 KOG0464 consensus 94.9 0.031 7.8E-07 35.3 3.5 14 158-171 241-254 (753)
449 PRK13900 type IV secretion sys 94.9 0.037 9.4E-07 34.8 3.9 29 214-242 155-183 (332)
450 COG3840 ThiQ ABC-type thiamine 94.9 0.019 4.8E-07 36.8 2.4 42 216-269 22-63 (231)
451 cd01854 YjeQ_engC YjeQ/EngC. 94.8 0.013 3.4E-07 37.9 1.4 67 296-362 76-163 (287)
452 KOG0057 consensus 94.7 0.019 4.8E-07 36.8 2.2 28 216-243 375-402 (591)
453 PRK11819 putative ABC transpor 94.7 0.038 9.6E-07 34.7 3.7 30 216-245 347-376 (556)
454 cd03300 ABC_PotA_N PotA is an 94.7 0.024 6.2E-07 36.0 2.6 42 216-269 23-64 (232)
455 cd03298 ABC_ThiQ_thiamine_tran 94.7 0.022 5.6E-07 36.3 2.4 42 216-269 21-62 (211)
456 KOG2203 consensus 94.6 0.06 1.5E-06 33.3 4.5 15 129-143 298-312 (772)
457 PRK10078 ribose 1,5-bisphospho 94.6 0.023 5.9E-07 36.1 2.3 49 219-272 2-51 (184)
458 cd03213 ABCG_EPDR ABCG transpo 94.5 0.024 6.2E-07 36.0 2.3 43 216-268 32-74 (194)
459 KOG2423 consensus 94.5 0.034 8.6E-07 35.0 3.0 86 276-361 185-298 (572)
460 cd03233 ABC_PDR_domain1 The pl 94.5 0.026 6.5E-07 35.9 2.4 45 216-269 30-74 (202)
461 cd03292 ABC_FtsE_transporter F 94.4 0.03 7.7E-07 35.4 2.7 42 216-269 24-65 (214)
462 PRK01889 ribosome-associated G 94.4 0.018 4.7E-07 36.9 1.5 66 295-360 108-193 (353)
463 COG4178 ABC-type uncharacteriz 94.4 0.091 2.3E-06 32.0 5.1 28 215-242 415-442 (604)
464 KOG0446 consensus 94.4 0.037 9.4E-07 34.8 3.0 118 218-335 28-215 (657)
465 PRK13546 teichoic acids export 94.4 0.028 7.2E-07 35.6 2.4 35 215-253 46-80 (264)
466 COG3640 CooC CO dehydrogenase 94.4 0.03 7.6E-07 35.4 2.5 88 219-332 98-198 (255)
467 CHL00131 ycf16 sulfate ABC tra 94.4 0.027 6.9E-07 35.7 2.3 46 215-270 28-73 (252)
468 pfam00437 GSPII_E Type II/IV s 94.4 0.032 8.3E-07 35.2 2.7 26 217-242 137-162 (283)
469 KOG1533 consensus 94.4 0.052 1.3E-06 33.7 3.7 112 220-336 3-180 (290)
470 PRK10787 DNA-binding ATP-depen 94.3 0.2 5.2E-06 29.6 6.6 45 196-241 327-371 (784)
471 PRK10771 thiQ thiamine transpo 94.3 0.031 7.9E-07 35.3 2.4 31 214-244 20-50 (233)
472 PRK13851 type IV secretion sys 94.3 0.037 9.5E-07 34.7 2.8 29 214-242 157-185 (343)
473 cd03264 ABC_drug_resistance_li 94.2 0.03 7.7E-07 35.4 2.3 41 216-269 23-63 (211)
474 cd03256 ABC_PhnC_transporter A 94.2 0.037 9.3E-07 34.8 2.6 42 216-269 24-65 (241)
475 cd03257 ABC_NikE_OppD_transpor 94.2 0.036 9.1E-07 34.9 2.6 43 216-270 28-70 (228)
476 KOG0743 consensus 94.2 0.037 9.5E-07 34.7 2.7 43 198-242 212-258 (457)
477 PRK11614 livF leucine/isoleuci 94.2 0.039 9.9E-07 34.6 2.7 43 215-269 27-69 (237)
478 cd03301 ABC_MalK_N The N-termi 94.2 0.037 9.6E-07 34.7 2.6 43 215-269 22-64 (213)
479 pfam06858 NOG1 Nucleolar GTP-b 94.2 0.046 1.2E-06 34.1 3.1 44 284-330 2-58 (58)
480 cd03223 ABCD_peroxisomal_ALDP 94.2 0.032 8.1E-07 35.2 2.3 28 216-243 24-51 (166)
481 COG0552 FtsY Signal recognitio 94.1 0.43 1.1E-05 27.4 8.0 110 219-331 139-296 (340)
482 cd03217 ABC_FeS_Assembly ABC-t 94.1 0.034 8.7E-07 35.0 2.3 27 216-242 23-49 (200)
483 cd03250 ABCC_MRP_domain1 Domai 94.1 0.034 8.7E-07 35.0 2.3 29 216-244 28-56 (204)
484 PRK10575 iron-hydroxamate tran 94.1 0.031 7.8E-07 35.3 2.1 43 216-270 34-76 (265)
485 KOG2484 consensus 94.1 0.029 7.4E-07 35.5 1.9 17 294-310 142-158 (435)
486 PRK11124 artP arginine transpo 94.1 0.056 1.4E-06 33.5 3.4 49 215-275 24-72 (242)
487 COG1136 SalX ABC-type antimicr 94.1 0.038 9.6E-07 34.7 2.5 30 216-245 28-57 (226)
488 PRK09580 sufC cysteine desulfu 94.1 0.036 9.2E-07 34.8 2.4 27 216-242 24-50 (248)
489 PRK10247 putative ABC transpor 94.0 0.037 9.5E-07 34.7 2.4 44 215-270 29-72 (225)
490 KOG0055 consensus 94.0 0.13 3.4E-06 30.9 5.3 29 215-243 375-403 (1228)
491 COG0404 GcvT Glycine cleavage 94.0 0.14 3.6E-06 30.7 5.4 82 18-109 146-232 (379)
492 KOG0082 consensus 94.0 0.1 2.7E-06 31.6 4.7 108 254-369 182-315 (354)
493 PRK10253 iron-enterobactin tra 94.0 0.036 9.1E-07 34.9 2.3 43 216-270 30-72 (265)
494 cd03247 ABCC_cytochrome_bd The 94.0 0.035 9E-07 34.9 2.2 42 216-269 25-66 (178)
495 TIGR00763 lon ATP-dependent pr 94.0 0.035 9E-07 34.9 2.2 45 196-241 416-472 (941)
496 cd03221 ABCF_EF-3 ABCF_EF-3 E 93.9 0.04 1E-06 34.5 2.4 29 216-244 23-51 (144)
497 PRK09984 phosphonate/organopho 93.9 0.04 1E-06 34.5 2.4 27 216-242 27-53 (262)
498 cd03225 ABC_cobalt_CbiO_domain 93.9 0.047 1.2E-06 34.0 2.8 42 216-269 24-65 (211)
499 PRK11248 tauB taurine transpor 93.9 0.04 1E-06 34.5 2.3 29 216-244 24-52 (255)
500 TIGR00064 ftsY signal recognit 93.9 0.2 5E-06 29.7 5.9 144 156-309 26-213 (284)
No 1
>PRK05291 trmE tRNA modification GTPase TrmE; Reviewed
Probab=100.00 E-value=0 Score=1059.17 Aligned_cols=436 Identities=42% Similarity=0.625 Sum_probs=409.9
Q ss_pred CCCCCCCEEEECCCCCCCCEEEEECCCHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCEEEEEEEEEECCCCCCCCCCE
Q ss_conf 96887829898468867616999727388999999871668888753899887548986720699999567799887753
Q gi|254780809|r 1 MNHEKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTGEDS 80 (440)
Q Consensus 1 M~~~~dTI~A~aTp~g~~aiaviRiSG~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~iD~~l~~~f~~P~SyTGEDv 80 (440)
|.. +|||||+|||+|+|||||||+|||+|+++++++|.++.|+||+++++++|+.+|++||+|+++||++|||||||||
T Consensus 1 m~~-~dTI~AlaTp~g~saiavIRiSG~~a~~i~~~l~~~~~~~~r~~~~~~~~d~~~~~iD~~l~~~f~~P~SyTGEDv 79 (445)
T PRK05291 1 MMM-NDTIAAIATPPGRGGIGIIRISGPDALEIAQKLFGKKLPKPRTAHYGHIYDPDGEVIDEVLVLYFPAPNSFTGEDV 79 (445)
T ss_pred CCC-CCCEEEECCCCCCCEEEEEEEECHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCCCCEEEEEEECCCCCCCCCCE
T ss_conf 997-8858997788877469999830660999999995689999978999999889988832699999559998877867
Q ss_pred EEEEECCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHH
Q ss_conf 99980898788999999875443200000036899787521567777778898850036889998875314310245665
Q gi|254780809|r 81 AEFHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQ 160 (440)
Q Consensus 81 vEi~~HG~~~i~~~il~~l~~~~g~r~A~pGEFT~RAflNgKidL~qaEai~~LI~A~t~~~~~~a~~~l~G~ls~~i~~ 160 (440)
|||||||||+|++++++.|++. |||+|+|||||+||||||||||+|||||+|||+|+|+.|+++|+++++|.+++++..
T Consensus 80 vEi~~HG~~~i~~~il~~l~~~-G~R~A~pGEFT~RAflNgK~dL~qaEav~dLI~A~t~~~~~~A~~~l~G~ls~~i~~ 158 (445)
T PRK05291 80 VEIQCHGGPVVLNLILQLLLKL-GARLAEPGEFTKRAFLNGKLDLTQAEAIADLIDAKTEAAARLALRQLQGELSKLINA 158 (445)
T ss_pred EEEECCCCHHHHHHHHHHHHHC-CCEECCCCCHHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHH
T ss_conf 9997679759999999999975-982248870168898658867999999999984777999999998647934589999
Q ss_pred HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHH
Q ss_conf 67769988865444311354431123325888864010001121233322345543202302431146631888999985
Q gi|254780809|r 161 WIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALA 240 (440)
Q Consensus 161 lr~~L~~~~a~iEa~IDF~dEedi~~~~~~~~~~~i~~i~~~l~~ll~~~~~~~~l~~g~~v~i~G~pN~GKSSL~N~L~ 240 (440)
||++|++++|++||.|||||| |+++.....+.+++..+..+++.++++++.++.+++|++|+|+|+||||||||||+|+
T Consensus 159 ~r~~L~~~~a~iEa~IDF~eE-di~~~~~~~i~~~l~~l~~~i~~ll~~~~~g~~l~~G~~v~i~G~PN~GKSSL~N~L~ 237 (445)
T PRK05291 159 LREELLELLALVEAAIDFPEE-DVEFLSDEKILEKLEELIAELEKLLASAKQGELLREGLKVVIAGRPNVGKSSLLNALL 237 (445)
T ss_pred HHHHHHHHHHHHHHHCCCHHC-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHH
T ss_conf 999999999888865164100-3652219999999999999999999998741786359869988999876899999985
Q ss_pred CCHHCCCCCCCCCCEEECCCCCCCCCEEEEEEECCHHCCCCHHHHHHHHHHHHHHHHHHCCEEECCCCCCHH------HH
Q ss_conf 520002345468721100012456835899950810002410356666788899850301102013589856------63
Q gi|254780809|r 241 KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK------EI 314 (440)
Q Consensus 241 ~~~~aIVs~~~GTTRD~i~~~~~i~g~~~~l~DTaGir~t~d~IE~~GI~ra~~~i~~aDlil~v~D~~~~~------~~ 314 (440)
|++|||||++||||||+|+..+.++|+||+|+||||||+|.|.||++||+||++.+++||++|||+|++.+. .+
T Consensus 238 ~~drAIVS~ipGTTRD~ie~~l~l~G~~v~l~DTAGiR~t~d~IE~~GI~ra~~~~~~ADlil~v~D~s~~~~~~~~~~~ 317 (445)
T PRK05291 238 GEERAIVTDIAGTTRDVIEEHINLDGIPLRLIDTAGIRETEDEVEKIGIERSRKAIEEADLVLLVLDASEPLTEEDKEIL 317 (445)
T ss_pred CCCCEEECCCCCCCCCEEEEEEEECCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCCCHHHHH
T ss_conf 78746731899974040223689999899999899766557458899999999999839999999879988872259999
Q ss_pred HHHCCCCCCCCCCCCCCCCCCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEHHHHHHHHHHHHHHHHHHH
Q ss_conf 43128985322223334465420-00001333323235899999999963220358863201489999999999999999
Q gi|254780809|r 315 SFPKNIDFIFIGTKSDLYSTYTE-EYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMA 393 (440)
Q Consensus 315 ~~~~~~~~i~V~NK~Dl~~~~~~-~~~~~ISaktg~Gi~~L~~~I~~~l~~~~~~~~~~i~~~~Rq~~~L~~a~~~L~~~ 393 (440)
...++++.++|+||+||.++... ...+.|||+||+|++.|++.|.+.+... ...+..+++++||+.+|++|+.+|+.+
T Consensus 318 ~~~~~~~~i~V~NK~DL~~~~~~~~~~i~iSak~g~Gi~~L~~~i~~~~~~~-~~~~~~~~~~~Rh~~~L~~a~~~L~~~ 396 (445)
T PRK05291 318 EEFKNKPVIVVLNKADLTGEKIDGLPVIRISAKTGEGIDELEEALKQLVGFQ-GNAEGVFLTRARHIEALEQALEHLERA 396 (445)
T ss_pred HHCCCCCEEEEEEHHHCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCC-CCCCCEEECHHHHHHHHHHHHHHHHHH
T ss_conf 8517998799985120466534789759998378869999999999997046-887770682899999999999999999
Q ss_pred HHH--CCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCC
Q ss_conf 753--27998014659999999863567185311587416765057899
Q gi|254780809|r 394 SLN--EKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 (440)
Q Consensus 394 ~~~--~~~~~~EliAeeLr~A~~~L~eItG~~~~EdiLd~IFs~FCIGK 440 (440)
... ....++|++|++||.|+++|++|||++++|||||+|||+|||||
T Consensus 397 ~~~l~~~~~~~el~a~~Lr~A~~~L~~itG~~~~edvLd~IFs~FCIGK 445 (445)
T PRK05291 397 LEQLEEGGLPLELLAEDLRLALEALGEITGEFTSEDLLDRIFSSFCIGK 445 (445)
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCC
T ss_conf 9999857997789999999999998788299977999989986379999
No 2
>COG0486 ThdF Predicted GTPase [General function prediction only]
Probab=100.00 E-value=0 Score=1036.82 Aligned_cols=435 Identities=42% Similarity=0.625 Sum_probs=410.9
Q ss_pred CCCCEEEECCCCCCCCEEEEECCCHHHHHHHHHHHCC-CCCCCCEEEEEEEECCCCCEEEEEEEEEECCCCCCCCCCEEE
Q ss_conf 8782989846886761699972738899999987166-888875389988754898672069999956779988775399
Q gi|254780809|r 4 EKETIFAVSTGALPSAISIIRLSGPSCFQVCEFICKK-KKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTGEDSAE 82 (440)
Q Consensus 4 ~~dTI~A~aTp~g~~aiaviRiSG~~~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~~iD~~l~~~f~~P~SyTGEDvvE 82 (440)
..|||||+|||||+|||||||+|||+++++++++|++ +.|+||+++|+++++.+|+.||++|++|||+|||||||||||
T Consensus 3 ~~dTI~AiaTa~g~~aI~IvRiSGp~a~~ia~~i~~~~~~~~~r~a~y~~i~d~~~~~iDe~lvl~f~aP~SFTGEDvvE 82 (454)
T COG0486 3 MFDTIAAIATAPGEGAIGIVRISGPDALEIAQKLFGGLKLPKPRTAHYGHIKDENGEIIDEVLVLYFKAPNSFTGEDVVE 82 (454)
T ss_pred CCCCEEEECCCCCCCEEEEEECCCHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCCEEEEEEEEEEECCCCCCCCCEEE
T ss_conf 77857998248878538999902774999999984777778871899998986997575225378870898746664799
Q ss_pred EEECCCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Q ss_conf 98089878899999987544320000003689978752156777777889885003688999887531431024566567
Q gi|254780809|r 83 FHVHGGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWI 162 (440)
Q Consensus 83 i~~HG~~~i~~~il~~l~~~~g~r~A~pGEFT~RAflNgKidL~qaEai~~LI~A~t~~~~~~a~~~l~G~ls~~i~~lr 162 (440)
|||||||++++.+++.+++. |+|+|+|||||+||||||||||+|||||+|||+|+|+.|+++|+++++|.+|..+..||
T Consensus 83 i~~HGg~~v~~~iL~~~l~~-GaR~AepGEFs~RAFLNgK~DLtqAEai~dLI~A~te~a~r~A~~~l~G~ls~~i~~lr 161 (454)
T COG0486 83 IQCHGGPVVVNLILELLLKL-GARLAEPGEFSKRAFLNGKLDLTQAEAIADLIDAKTEQAARIALRQLQGALSQLINELR 161 (454)
T ss_pred EECCCCHHHHHHHHHHHHHC-CCEECCCCCCHHHHHHCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf 97679899999999999974-98343888536888865884689998899998388899999999975773889999999
Q ss_pred HHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHCC
Q ss_conf 76998886544431135443112332588886401000112123332234554320230243114663188899998552
Q gi|254780809|r 163 DKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242 (440)
Q Consensus 163 ~~L~~~~a~iEa~IDF~dEedi~~~~~~~~~~~i~~i~~~l~~ll~~~~~~~~l~~g~~v~i~G~pN~GKSSL~N~L~~~ 242 (440)
+.|+++++++||.|||||| |+|+.....+..++..++.++.+++..+++|+.+|+|++|||+|+||||||||+|+|+++
T Consensus 162 ~~li~~~a~vEa~IDfpee-di~~~~~~~i~~~l~~~~~~l~~ll~~~~~g~ilr~G~kvvIiG~PNvGKSSLLNaL~~~ 240 (454)
T COG0486 162 EALLELLAQVEANIDFPEE-DIEELVLEKIREKLEELIAELDELLATAKQGKILREGLKVVIIGRPNVGKSSLLNALLGR 240 (454)
T ss_pred HHHHHHHHHHEEECCCCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHCC
T ss_conf 9999999884486777754-566014789999999999999999974442136645864999879988679999988667
Q ss_pred HHCCCCCCCCCCEEECCCCCCCCCEEEEEEECCHHCCCCHHHHHHHHHHHHHHHHHHCCEEECCCCCCH---H---HHH-
Q ss_conf 000234546872110001245683589995081000241035666678889985030110201358985---6---634-
Q gi|254780809|r 243 DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK---K---EIS- 315 (440)
Q Consensus 243 ~~aIVs~~~GTTRD~i~~~~~i~g~~~~l~DTaGir~t~d~IE~~GI~ra~~~i~~aDlil~v~D~~~~---~---~~~- 315 (440)
++|||||+||||||++|+.++++|+|++|+||||||+|+|.||++||+||++.+++||+||||+|++.+ . .+.
T Consensus 241 d~AIVTdI~GTTRDviee~i~i~G~pv~l~DTAGiRet~d~VE~iGIeRs~~~i~~ADlvL~v~D~~~~~~~~d~~~~~~ 320 (454)
T COG0486 241 DRAIVTDIAGTTRDVIEEDINLNGIPVRLVDTAGIRETDDVVERIGIERAKKAIEEADLVLFVLDASQPLDKEDLALIEL 320 (454)
T ss_pred CCEEECCCCCCCCCEEEEEEEECCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHH
T ss_conf 86674289997410378999989889999856776667348999999999999985998999970887776011778872
Q ss_pred HHCCCCCCCCCCCCCCCCCCCH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEHHHHHHHHHHHHH
Q ss_conf 3128985322223334465420--------00001333323235899999999963220358863201489999999999
Q gi|254780809|r 316 FPKNIDFIFIGTKSDLYSTYTE--------EYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTV 387 (440)
Q Consensus 316 ~~~~~~~i~V~NK~Dl~~~~~~--------~~~~~ISaktg~Gi~~L~~~I~~~l~~~~~~~~~~i~~~~Rq~~~L~~a~ 387 (440)
...++|+++|+||+||.++... ...+.+||+||+|++.|.++|.+.+.......+..+++|.||+.+|+++.
T Consensus 321 ~~~~~~~i~v~NK~DL~~~~~~~~~~~~~~~~~i~iSa~t~~Gl~~L~~~i~~~~~~~~~~~~~~~i~~~Rh~~~L~~a~ 400 (454)
T COG0486 321 LPKKKPIIVVLNKADLVSKIELESEKLANGDAIISISAKTGEGLDALREAIKQLFGKGLGNQEGLFLSNLRHIQLLEQAA 400 (454)
T ss_pred CCCCCCEEEEEECHHCCCCCCCCHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCCEEECHHHHHHHHHHH
T ss_conf 43689779999602115643210120267882699982576579999999999986301565420220399999999999
Q ss_pred HHHHHHHHHCC-CCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCC
Q ss_conf 99999975327-998014659999999863567185311587416765057899
Q gi|254780809|r 388 RYLEMASLNEK-DCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 (440)
Q Consensus 388 ~~L~~~~~~~~-~~~~EliAeeLr~A~~~L~eItG~~~~EdiLd~IFs~FCIGK 440 (440)
.+|+.+..... +.++|++++|||.|+++||+|||++++||+||+|||+|||||
T Consensus 401 ~~l~~a~~~~~~~~~~dl~a~dLr~A~~~LgeItG~~~~edlLd~IFs~FCiGK 454 (454)
T COG0486 401 EHLEDALQQLELGQPLDLLAEDLRLAQEALGEITGEFVSEDLLDEIFSNFCIGK 454 (454)
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCC
T ss_conf 999999862431698144599999999999887587866888999987516799
No 3
>TIGR00450 thdF tRNA modification GTPase TrmE; InterPro: IPR004520 The GTP-binding domain of all TrmE/ThdF orthologues is found in the C-terminal portion of the molecule. The N-terminal half can be removed without affecting the GTP-binding/hydrolysis function of the GTP-binding domain. The last four amino acids of all orthologues of ThdF/TrmE are highly conserved, being either CIGK or CLGK. This matches the Caax (where 'a' represents an aliphatic amino acid, and 'x' represents any amino acid) motif for isoprenylation that anchors small GTP-binding proteins to cell membranes in eukaryotic cells. However, protein isoprenylation has never been shown to occur in bacteria. Interestingly, biochemical experiments have shown that the Escherichia coli TrmE protein peripherally associates with the membrane fraction . Although the biochemical properties of TrmE have been investigated for the E. coli and Thermotoga maritima proteins, nothing is known about the relationship of this protein to tRNA modification. Orthologues of TrmE are present in eukaryotes and bacteria, but are not present in archaea. In Saccharomyces cerevisiae, Mss1p is a nuclear-encoded mitochondrial protein that is the yeast orthologue of TrmE. Mss1p interacts with the 15S rRNA of the yeast mitochondria, which is equivalent to the 16S rRNA of bacteria. Subsequent analysis of the S. cerevisiae MTO1 gene suggests that MSS1 and MTO1 act together in a pathway involved in optimizing mitochondrial protein synthesis. TrmE may play a role in tRNA processing and may be directly or indirectly involved in regulating ribosome function.; GO: 0003924 GTPase activity, 0005525 GTP binding, 0006400 tRNA modification, 0005622 intracellular.
Probab=100.00 E-value=0 Score=831.97 Aligned_cols=427 Identities=34% Similarity=0.513 Sum_probs=362.4
Q ss_pred CCCCCCCCEEEEECCCHHHHHHHHHHHCC---C--CCCCCEEEEEEEECCCCCEEEEEEEEE-ECCCCCCCCCCEEEEEE
Q ss_conf 46886761699972738899999987166---8--888753899887548986720699999-56779988775399980
Q gi|254780809|r 12 STGALPSAISIIRLSGPSCFQVCEFICKK---K--KPFPRKASLRYFFGLDGRILDKGLLIV-FPSPESFTGEDSAEFHV 85 (440)
Q Consensus 12 aTp~g~~aiaviRiSG~~~~~i~~~~~~~---~--~~~~~~~~~~~~~~~~~~~iD~~l~~~-f~~P~SyTGEDvvEi~~ 85 (440)
|-||+.|||+|||+|||+++.+++++|.. + .+...+..|+|+.+.++..+|++++++ +.||+||||||+|||+|
T Consensus 5 ai~~~~sAi~iir~SG~~~~~i~~~it~~Ph~~~~~~~g~ri~y~~~~~~~~~~~~d~ll~~l~~AP~SyTGeD~iEi~C 84 (473)
T TIGR00450 5 AIPPFNSAIHIIRLSGPDSLSILKKITDAPHNKKKTAEGMRIQYGHIIDSNNKALDDELLLKLVAAPNSYTGEDVIEIQC 84 (473)
T ss_pred CCCCCCCCEEEEEECCHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEEEECCCCCHHHHHHHHHHHCCCCCCCCCEEEEEE
T ss_conf 23424676179970547899999986247111001457761789999716864028888988875679878873589960
Q ss_pred CCCHHHHHHHHHHHHHHHH-HHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf 8987889999998754432-000000368997875215677777788988500368899988753143102456656776
Q gi|254780809|r 86 HGGIAVVNGILEELAKMPN-LRLANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDK 164 (440)
Q Consensus 86 HG~~~i~~~il~~l~~~~g-~r~A~pGEFT~RAflNgKidL~qaEai~~LI~A~t~~~~~~a~~~l~G~ls~~i~~lr~~ 164 (440)
|||+.+|+.|++.+++. | +|+|+|||||+||||||||||+|||||..||-|++.....+|+++|.|.+..+++.+|+.
T Consensus 85 HGs~~~v~~i~~L~L~~-GGar~A~PGEFt~raFLn~k~dL~~aea~~~Lil~~~~~~~~~~l~~L~G~l~~~i~~~~~~ 163 (473)
T TIGR00450 85 HGSVLIVQEILQLLLKS-GGARLAKPGEFTQRAFLNGKMDLTQAEAINELILAPNEKVKDIALNKLAGELDQKIEELRKS 163 (473)
T ss_pred CCCCHHHHHHHHHHHHC-CCCEECCCCCCHHHHHHHCCCCHHHHHHHHHHHCCCCHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf 78704788999999835-88023267652046664124477899988775438887799999985067122568999999
Q ss_pred HHHHHHHHHHHHCCCCCCCHH--HHHHHHHHHHHCCCHHHHHHHHHHHH-----H-HHHHHHCCCEEEECCCCCCHHHHH
Q ss_conf 998886544431135443112--33258888640100011212333223-----4-554320230243114663188899
Q gi|254780809|r 165 LTHIRSFIEADLDFSEEEDVQ--NFSSKEVLNDILFLKNDISSHISQGK-----L-GEIIRNGYKIVILGHSNAGKSSLF 236 (440)
Q Consensus 165 L~~~~a~iEa~IDF~dEedi~--~~~~~~~~~~i~~i~~~l~~ll~~~~-----~-~~~l~~g~~v~i~G~pN~GKSSL~ 236 (440)
+..+++.+|+.|||||| +.| ..+...+.+.+..+...++.+++.++ . -+++++|++|+|+|.|||||||||
T Consensus 164 ~l~ll~~~ev~iDY~~~-~~e~d~~~~~~~~~~~~~~~~~L~~i~~~~~aq~~~~vl~~l~~g~k~ai~G~~NvGKSSLL 242 (473)
T TIGR00450 164 LLQLLAQVEVNIDYEED-DDELDQLELVSLNQKLEKIIAELKDILNSANAQRSKKVLEKLKDGFKLAIVGKPNVGKSSLL 242 (473)
T ss_pred HHHHHHHHHHCCCCCCC-CCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHH
T ss_conf 98888874310267545-77531120001789999999999999987641003458998408947999647887578999
Q ss_pred HHHHCCHHCCCCCCCCCCEEECCCCCCCCCEEEEEEECCHHCCCCHHHHHHHHHHHHHHHHHHCCEEECCCCCCHH---H
Q ss_conf 9985520002345468721100012456835899950810002410356666788899850301102013589856---6
Q gi|254780809|r 237 NALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK---E 313 (440)
Q Consensus 237 N~L~~~~~aIVs~~~GTTRD~i~~~~~i~g~~~~l~DTaGir~t~d~IE~~GI~ra~~~i~~aDlil~v~D~~~~~---~ 313 (440)
|+++.+||||||++||||||+||+.+.++|++|+++||||||++.|.||+.||+||.+.+++||+||+|+|++.+. +
T Consensus 243 Na~l~~DrAiVS~~kGtTRD~vE~~~~L~G~~~~~lDTAGiR~~~~~~E~~GiekS~~~i~~A~LVi~~~D~~~~~~~dd 322 (473)
T TIGR00450 243 NALLKQDRAIVSDIKGTTRDVVEGDFELNGILVKLLDTAGIREHADKVERLGIEKSFKAIKQADLVIYVLDASQPLTKDD 322 (473)
T ss_pred HHHHHCCCEEEECCCCCCCCEEEEEEEECCEEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCCHHH
T ss_conf 98762287055276688320442057774678998514675102004667768998999860573478887478988105
Q ss_pred ---HH--HHCCCCCCCCCCCCCCCCCC-CHHHH----------HHHHHHH---HHHHHHHHHHHHHHHHHHCCC--CCCC
Q ss_conf ---34--31289853222233344654-20000----------0133332---323589999999996322035--8863
Q gi|254780809|r 314 ---IS--FPKNIDFIFIGTKSDLYSTY-TEEYD----------HLISSFT---GEGLEELINKIKSILSNKFKK--LPFS 372 (440)
Q Consensus 314 ---~~--~~~~~~~i~V~NK~Dl~~~~-~~~~~----------~~ISakt---g~Gi~~L~~~I~~~l~~~~~~--~~~~ 372 (440)
+. ..+++|.++|+||.||..+. ..... ..+++++ .++++.|.+.|.+.+...... ....
T Consensus 323 f~li~~~~k~~k~~~~V~NK~DL~~nkr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~L~~~i~~~~~~~~~~iG~~~~ 402 (473)
T TIGR00450 323 FELIITLNKKKKPLILVLNKIDLAINKRKLELEFLVSELKLTVLLLSAKQLKIKALVDLLTQKINAFYSKERDEIGLDLY 402 (473)
T ss_pred HHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 89999973217977999735016500234444441311345788998873065667999999999874144453104688
Q ss_pred EEHHHHH-HHHHHHHHHHHHH-HHHHC-CCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCCCC
Q ss_conf 2014899-9999999999999-97532-7998014659999999863567185311587416765057899
Q gi|254780809|r 373 IPSHKRH-LYHLSQTVRYLEM-ASLNE-KDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSKFCIGK 440 (440)
Q Consensus 373 i~~~~Rq-~~~L~~a~~~L~~-~~~~~-~~~~~EliAeeLr~A~~~L~eItG~~~~EdiLd~IFs~FCIGK 440 (440)
++.+.++ ...+++|...|+. ..... ....+|+++.|+|.|+++|+++||+..++||||+||++||+||
T Consensus 403 l~~~~~~~~~~le~a~~~L~~t~~~~~~~~l~~D~l~~hl~~a~~~l~~~tG~~~~~~~ld~iF~~FCLGK 473 (473)
T TIGR00450 403 LISSWQAVLILLEKAIAELQQTLLEKLERQLFLDLLVIHLREAINALGQVTGETVTEDVLDEIFSNFCLGK 473 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCC
T ss_conf 87448999999999999999999987425666899999999999988865077553679998863037899
No 4
>KOG1191 consensus
Probab=100.00 E-value=0 Score=709.42 Aligned_cols=434 Identities=39% Similarity=0.576 Sum_probs=386.1
Q ss_pred CEEEECCCCC-CCCEEEEECCCHHHHHHHHHHHCCC-CCCCCEEEEEEEECC---------CCCEEEEEEEEEECCCCCC
Q ss_conf 2989846886-7616999727388999999871668-888753899887548---------9867206999995677998
Q gi|254780809|r 7 TIFAVSTGAL-PSAISIIRLSGPSCFQVCEFICKKK-KPFPRKASLRYFFGL---------DGRILDKGLLIVFPSPESF 75 (440)
Q Consensus 7 TI~A~aTp~g-~~aiaviRiSG~~~~~i~~~~~~~~-~~~~~~~~~~~~~~~---------~~~~iD~~l~~~f~~P~Sy 75 (440)
||||++||.| ++|++|+|+|||++.++++.++.+. .|+++.+.++.+|+. +|.++|+++.+||+||.||
T Consensus 43 Ti~alst~~~~~~aiai~R~sG~~a~kv~r~L~~s~~v~~~~~~~~~~l~~~~~r~~~~~e~~v~~D~~l~l~~~gp~sF 122 (531)
T KOG1191 43 TIFALSTGIGLTSAIAIFRISGPDATKVARRLLRSVMVPKRRNAGLRALYNPEVRVYVVDEDGVTRDRALGLYFLGPQSF 122 (531)
T ss_pred EEEEEECCCCCCCCEEEEEECCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCHHHHHHCCCCCCCEE
T ss_conf 17885258888752259981483177999986021325788754501014855512246888742213341003588223
Q ss_pred CCCCEEEEEECCCHHHHHHHHHHHH--HHHHHHHCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 8775399980898788999999875--44320000003689978752156777777889885003688999887531431
Q gi|254780809|r 76 TGEDSAEFHVHGGIAVVNGILEELA--KMPNLRLANPGEFSRRAFENGKIDLLEAESLADLISSETEMQRRLSMEGMSGE 153 (440)
Q Consensus 76 TGEDvvEi~~HG~~~i~~~il~~l~--~~~g~r~A~pGEFT~RAflNgKidL~qaEai~~LI~A~t~~~~~~a~~~l~G~ 153 (440)
||||++|+|||||++++..++..+. ..+|+|+|+|||||+|||+|||.||+|+|++.+||.|+|+.|+..|+.++.|.
T Consensus 123 tgeD~~el~~hgs~avv~~~l~a~~~sg~~~ir~a~~geft~Raf~ngk~~Ltq~eg~~~lI~a~t~~q~~~Al~~v~g~ 202 (531)
T KOG1191 123 TGEDVVELQTHGSSAVVVGVLTALGASGIPGIRLAEPGEFTRRAFLNGKLDLTQAEGIIDLIVAETESQRRAALDEVAGE 202 (531)
T ss_pred EEEEEEEEEEECCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHCCH
T ss_conf 43325889983476001367777654167786435823454343441531255524823442110276654446541331
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCHH
Q ss_conf 02456656776998886544431135443112332588886401000112123332234554320230243114663188
Q gi|254780809|r 154 LSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKS 233 (440)
Q Consensus 154 ls~~i~~lr~~L~~~~a~iEa~IDF~dEedi~~~~~~~~~~~i~~i~~~l~~ll~~~~~~~~l~~g~~v~i~G~pN~GKS 233 (440)
.......||..+++.++++|+.|||.|+..+++....++......++.++...++.++..+.+++|+.|||+|+||||||
T Consensus 203 ~~~l~~~~r~~lIe~~a~l~a~idf~e~~~l~~~~t~~~~~~~~~l~d~v~s~l~~~~~~e~lq~gl~iaIvGrPNvGKS 282 (531)
T KOG1191 203 ALALCFGWRKILIEALAGLEARIDFEEERPLEEIETVEIFIESLSLLDDVLSHLNKADEIERLQSGLQIAIVGRPNVGKS 282 (531)
T ss_pred HHHHHHHHHHHHHHHHHCCCEEECHHHCCCHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCHH
T ss_conf 67766538999999873220241443307555403002036788889999988875346777635772899769987788
Q ss_pred HHHHHHHCCHHCCCCCCCCCCEEECCCCCCCCCEEEEEEECCHHCC-CCHHHHHHHHHHHHHHHHHHCCEEECCCCCC--
Q ss_conf 8999985520002345468721100012456835899950810002-4103566667888998503011020135898--
Q gi|254780809|r 234 SLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-TDDIVEKEGIKRTFLEVENADLILLLKEINS-- 310 (440)
Q Consensus 234 SL~N~L~~~~~aIVs~~~GTTRD~i~~~~~i~g~~~~l~DTaGir~-t~d~IE~~GI~ra~~~i~~aDlil~v~D~~~-- 310 (440)
||+|+|+.++|+|||++||||||.|+..++++|+|++|+||||+|+ +.|.||++||+||+++++.||++++|+|+..
T Consensus 283 SLlNaL~~~drsIVSpv~GTTRDaiea~v~~~G~~v~L~DTAGiRe~~~~~iE~~gI~rA~k~~~~advi~~vvda~~~~ 362 (531)
T KOG1191 283 SLLNALSREDRSIVSPVPGTTRDAIEAQVTVNGVPVRLSDTAGIREESNDGIEALGIERARKRIERADVILLVVDAEESD 362 (531)
T ss_pred HHHHHHHCCCCEEECCCCCCCHHHHEEEEECCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCEEEEEECCCCCC
T ss_conf 99988750774476789996410012276308758999734131002687067776899998876547799996330033
Q ss_pred ---HHH-HH--------------HHCCCCCCCCCCCCCCCCCCC---H--------------HHHHHHHHHHHHHHHHHH
Q ss_conf ---566-34--------------312898532222333446542---0--------------000013333232358999
Q gi|254780809|r 311 ---KKE-IS--------------FPKNIDFIFIGTKSDLYSTYT---E--------------EYDHLISSFTGEGLEELI 355 (440)
Q Consensus 311 ---~~~-~~--------------~~~~~~~i~V~NK~Dl~~~~~---~--------------~~~~~ISaktg~Gi~~L~ 355 (440)
... .. ...+.+.|++.||+|+.++.. . .....+||+|++|++.|.
T Consensus 363 t~sd~~i~~~l~~~~~g~~~~~~~~~~~~~i~~~nk~D~~s~~~~~~~~~~~~~~~~~~~~~~i~~~vs~~tkeg~~~L~ 442 (531)
T KOG1191 363 TESDLKIARILETEGVGLVVIVNKMEKQRIILVANKSDLVSKIPEMTKIPVVYPSAEGRSVFPIVVEVSCTTKEGCERLS 442 (531)
T ss_pred CCCCHHHHHHHHHHCCCEEEEECCCCCCCEEEEECHHHCCCCCCCCCCCCEECCCCCCCCCCCEEEEEEECHHHHHHHHH
T ss_conf 32532899998874255589704443462378861022157664456774002353357666337886412004489999
Q ss_pred HHHHHHHHHHCC--CCCCCEEHHHHHHHHHHHHHH-HHHHHHH-HCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHH
Q ss_conf 999999632203--588632014899999999999-9999975-327998014659999999863567185311587416
Q gi|254780809|r 356 NKIKSILSNKFK--KLPFSIPSHKRHLYHLSQTVR-YLEMASL-NEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDI 431 (440)
Q Consensus 356 ~~I~~~l~~~~~--~~~~~i~~~~Rq~~~L~~a~~-~L~~~~~-~~~~~~~EliAeeLr~A~~~L~eItG~~~~EdiLd~ 431 (440)
++|.+.+..... ........+.|+...++.+.. .++.... .....++++.+++||.|+..+++++|...+|++|+.
T Consensus 443 ~all~~~~~~~~~~~s~~~t~~~~r~~~~~r~~~~~~l~~~~~~k~~~~D~~la~~~lR~a~~~i~r~tggggte~vls~ 522 (531)
T KOG1191 443 TALLNIVERLVVSPHSAPPTLSQKRIKELLRTCAAPELERRFLAKQLKEDIDLAGEPLRLAQRSIARITGGGGTEEVLSS 522 (531)
T ss_pred HHHHHHHHHHHCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCHHHHHHHHHCCCCCCCCHHHHHHH
T ss_conf 99999998751687788410123357788776543567889876510446222020179998533236888751558888
Q ss_pred HHHCCCCCC
Q ss_conf 765057899
Q gi|254780809|r 432 IFSKFCIGK 440 (440)
Q Consensus 432 IFs~FCIGK 440 (440)
||++|||||
T Consensus 523 ifqkfcigK 531 (531)
T KOG1191 523 IFQKFCIGK 531 (531)
T ss_pred HHHHHHCCC
T ss_conf 998762689
No 5
>pfam10396 TrmE_N GTP-binding protein TrmE N-terminus. This family represents the shorter, B, chain of the homo-dimeric structure which is a guanine nucleotide-binding protein that binds and hydrolyses GTP. TrmE is homologous to the tetrahydrofolate-binding domain of N,N-dimethylglycine oxidase and indeed binds formyl-tetrahydrofolate. TrmE actively participates in the formylation reaction of uridine and regulates the ensuing hydrogenation reaction of a Schiff's base intermediate. This B chain is the N-terminal portion of the protein consisting of five beta-strands and three alpha helices and is necessary for mediating dimer formation within the protein.
Probab=100.00 E-value=1.4e-45 Score=335.48 Aligned_cols=114 Identities=47% Similarity=0.768 Sum_probs=110.9
Q ss_pred CEEEECCCCCCCCEEEEECCCHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCEEEEEEEEEECCCCCCCCCCEEEEEEC
Q ss_conf 29898468867616999727388999999871668888753899887548986720699999567799887753999808
Q gi|254780809|r 7 TIFAVSTGALPSAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTGEDSAEFHVH 86 (440)
Q Consensus 7 TI~A~aTp~g~~aiaviRiSG~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~iD~~l~~~f~~P~SyTGEDvvEi~~H 86 (440)
||||+|||+|+|||||||||||++++++++++. +.++||.++++++++.++++||+++++||++|+|||||||||||||
T Consensus 1 TI~AlaT~~g~saiaVIRvSG~~a~~~~~~l~~-~~~~~r~~~~~~~~d~~~~~iD~~lv~~f~~P~SyTGED~vEi~~H 79 (114)
T pfam10396 1 TIAAIATPPGRGGIAIIRISGPDALEIAKKLFG-KLPKPRTAHYGTIRDPNGEVIDEVLVLYFPAPNSFTGEDVVEIHCH 79 (114)
T ss_pred CEEEECCCCCCCEEEEEEEECCCHHHHHHHHCC-CCCCCCEEEEEEEECCCCCEEEEEEEEEECCCCCCCCCCEEEEEEC
T ss_conf 989976788873699999878448999999736-7999988999999889998841789986069988754447999824
Q ss_pred CCHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCC
Q ss_conf 987889999998754432000000368997875215
Q gi|254780809|r 87 GGIAVVNGILEELAKMPNLRLANPGEFSRRAFENGK 122 (440)
Q Consensus 87 G~~~i~~~il~~l~~~~g~r~A~pGEFT~RAflNgK 122 (440)
|||+|+++|++.|++. |+|+|+|||||+|||||||
T Consensus 80 G~~~i~~~il~~l~~~-G~R~A~pGEFT~RAflNgK 114 (114)
T pfam10396 80 GGPAVVQAILQALLKL-GARLAEPGEFTRRAFLNGK 114 (114)
T ss_pred CCHHHHHHHHHHHHHC-CCEECCCCHHHHHHHHCCC
T ss_conf 9879999999999876-9822599706588886689
No 6
>cd04164 trmE TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance.
Probab=100.00 E-value=8.9e-36 Score=268.08 Aligned_cols=144 Identities=44% Similarity=0.627 Sum_probs=129.6
Q ss_pred CCCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCCEEECCCCCCCCCEEEEEEECCHHCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 23024311466318889999855200023454687211000124568358999508100024103566667888998503
Q gi|254780809|r 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298 (440)
Q Consensus 219 g~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTTRD~i~~~~~i~g~~~~l~DTaGir~t~d~IE~~GI~ra~~~i~~ 298 (440)
|++|+|+|+||||||||||+|+|+++||||++||||||.++..+.++|+++.|+||||++++.+.+|++|++++++++++
T Consensus 1 ~~~ValvG~pN~GKStL~N~l~g~~~~ivs~~pgtTrd~~~~~~~~~~~~i~l~DTpG~~~~~~~~e~~~~~~~~~~i~~ 80 (157)
T cd04164 1 GIKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIGGIPVRLIDTAGIRETEDEIEKIGIERAREAIEE 80 (157)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCEEECCCCCEEEECCEEEEEECCEEEEEEECCCCCCCCCHHHHHHHHHHHHHCCC
T ss_conf 97999988999989999999968973343288984786326789539988999726775444578999999999863015
Q ss_pred HCCEEECCCCCCHH------HHHHHCCCCCCCCCCCCCCCCCCC------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 01102013589856------634312898532222333446542------00000133332323589999999996
Q gi|254780809|r 299 ADLILLLKEINSKK------EISFPKNIDFIFIGTKSDLYSTYT------EEYDHLISSFTGEGLEELINKIKSIL 362 (440)
Q Consensus 299 aDlil~v~D~~~~~------~~~~~~~~~~i~V~NK~Dl~~~~~------~~~~~~ISaktg~Gi~~L~~~I~~~l 362 (440)
||++++|+|++... ......++|+++|+||+|+.++.. ....+.|||++|.|+++|++.|.+..
T Consensus 81 aDlil~vvD~~~~~~~~~~~~~~~~~~~p~i~v~NKiDl~~~~~~~~~~~~~~vi~ISA~~g~Gi~~L~~~I~e~a 156 (157)
T cd04164 81 ADLVLFVIDASRGLDEEDLEILELPADKPIIVVLNKSDLLPDSELLSLLAGKPIIAISAKTGEGLDELKEALLELA 156 (157)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHC
T ss_conf 7679999889877888899999851479989999676014866679852899779998527959999999999972
No 7
>PRK09518 bifunctional cytidylate kinase/GTP-binding protein; Reviewed
Probab=100.00 E-value=6.8e-36 Score=268.88 Aligned_cols=153 Identities=26% Similarity=0.343 Sum_probs=130.2
Q ss_pred HHCCCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCCEEECCCCCCCCCEEEEEEECCHHCC---CCHHHHHHHHHHHH
Q ss_conf 202302431146631888999985520002345468721100012456835899950810002---41035666678889
Q gi|254780809|r 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE---TDDIVEKEGIKRTF 293 (440)
Q Consensus 217 ~~g~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTTRD~i~~~~~i~g~~~~l~DTaGir~---t~d~IE~~GI~ra~ 293 (440)
...++|||+|+||||||||+|+|+|++|+|||++||||||.|...+.++|.++.|+||||||. ..+.+|...+.||+
T Consensus 450 ~~~~rIAIIGRPNVGKSTLiN~LlgeeR~IVs~iaGTTRDsId~~~~~~g~~~~lIDTAGiRkk~k~~~~iE~~S~~rt~ 529 (714)
T PRK09518 450 SGLRRVALVGRPNVGKSSLLNQLTREERAVVNDLAGTTRDPVDEIVNIDGKDWLFVDTAGIRRKQKKLTGAEYYASLRTQ 529 (714)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEECEEEEEEEECCEEEEEEECHHCCCCCCCCCCCCHHHHHHHH
T ss_conf 67735888669988789999999689758856889850230556799999789999860015244325432279999999
Q ss_pred HHHHHHCCEEECCCCCCHH---H-----HHHHCCCCCCCCCCCCCCCCCCCHH----------------HHHHHHHHHHH
Q ss_conf 9850301102013589856---6-----3431289853222233344654200----------------00013333232
Q gi|254780809|r 294 LEVENADLILLLKEINSKK---E-----ISFPKNIDFIFIGTKSDLYSTYTEE----------------YDHLISSFTGE 349 (440)
Q Consensus 294 ~~i~~aDlil~v~D~~~~~---~-----~~~~~~~~~i~V~NK~Dl~~~~~~~----------------~~~~ISaktg~ 349 (440)
++++.||++++|+|++..- + .....++++|+|+||+||.++.... +.++|||++|.
T Consensus 530 ~aI~~adVvllviDA~~git~QD~~Ia~~i~~~gk~~IivvNKWDLv~~~~~~~~~~~i~~~l~~~~~apiv~iSA~~g~ 609 (714)
T PRK09518 530 AAIERCELALILFDASQPISEQDLRVMSMAVDAGRALVLAFNKWDLMDEFRRQRLEREIDTEFDRVMWAERVNISAKTGR 609 (714)
T ss_pred HHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCEEEEEECHHCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCC
T ss_conf 98865889999986776752899999999998599379999614306866899999999975636899988999667897
Q ss_pred HHHHHHHHHHHHHHHHCCCC
Q ss_conf 35899999999963220358
Q gi|254780809|r 350 GLEELINKIKSILSNKFKKL 369 (440)
Q Consensus 350 Gi~~L~~~I~~~l~~~~~~~ 369 (440)
|++.|.+.+.+.+.......
T Consensus 610 ~v~kl~~~i~~~~~~~~~rI 629 (714)
T PRK09518 610 HTNRLARAMDKALESWDQRI 629 (714)
T ss_pred CHHHHHHHHHHHHHHHHCCC
T ss_conf 88999999999999960639
No 8
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=100.00 E-value=2.8e-34 Score=257.65 Aligned_cols=173 Identities=32% Similarity=0.434 Sum_probs=141.0
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHH--HHHHHCC-CEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCCEEECCCCCC
Q ss_conf 325888864010001121233322345--5432023-0243114663188899998552000234546872110001245
Q gi|254780809|r 187 FSSKEVLNDILFLKNDISSHISQGKLG--EIIRNGY-KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLD 263 (440)
Q Consensus 187 ~~~~~~~~~i~~i~~~l~~ll~~~~~~--~~l~~g~-~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTTRD~i~~~~~ 263 (440)
.+...+.+++..++++++++.++...+ .+.++|+ +|+|+|+||||||||||+|+|++ ++|+++||||||.....+.
T Consensus 6 ~~~~~i~~ri~~l~~~l~k~~~~~~~~r~~r~~~g~p~VaivG~PNvGKSTLlN~L~g~~-~~v~~~~~tT~d~~~~~i~ 84 (204)
T cd01878 6 TDRRLIRERIAKLRRELEKVKKQRELQRRRRKRSGIPTVALVGYTNAGKSTLFNALTGAD-VYAEDQLFATLDPTTRRLR 84 (204)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHCCC-CEEECCCCCCCCCEEEEEE
T ss_conf 999999999999999999999999999888774599879998899998999999994899-6341567764576366899
Q ss_pred C-CCEEEEEEECCH-HCCC-CHHHHHHHHHHHHHHHHHHCCEEECCCCCCHHHHH-------H-----HCCCCCCCCCCC
Q ss_conf 6-835899950810-0024-10356666788899850301102013589856634-------3-----128985322223
Q gi|254780809|r 264 L-EGYLVKISDTAG-IRET-DDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS-------F-----PKNIDFIFIGTK 328 (440)
Q Consensus 264 i-~g~~~~l~DTaG-ir~t-~d~IE~~GI~ra~~~i~~aDlil~v~D~~~~~~~~-------~-----~~~~~~i~V~NK 328 (440)
+ +|.++.|+|||| +|+. .+.+|. ++.+++++.+||+++||+|++++.... . ..++|+++|+||
T Consensus 85 ~~~~~~i~l~DT~G~i~~~p~~lie~--~~~tle~i~~AD~il~vvD~s~~~~~~~~~~~~~~l~~l~~~~k~~i~V~NK 162 (204)
T cd01878 85 LPDGREVLLTDTVGFIRDLPHQLVEA--FRSTLEEVAEADLLLHVVDASDPDYEEQIETVEKVLKELGAEDIPMILVLNK 162 (204)
T ss_pred ECCCCEEEEEECCCCCCCCCHHHHHH--HHHHHHHHHHCCEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCEEEEEEC
T ss_conf 56997799983686446783789999--9999999973989999997998536677999999999806555760788867
Q ss_pred CCCCCCCCH--------HHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 334465420--------0000133332323589999999996
Q gi|254780809|r 329 SDLYSTYTE--------EYDHLISSFTGEGLEELINKIKSIL 362 (440)
Q Consensus 329 ~Dl~~~~~~--------~~~~~ISaktg~Gi~~L~~~I~~~l 362 (440)
+|+.+.... ...+.|||++|.|++.|++.|.+.+
T Consensus 163 iDl~~~~~~~~~~~~~~~~~i~ISA~~g~Gid~L~~~I~e~L 204 (204)
T cd01878 163 IDLLDDEELEERLEAGRPDAVFISAKTGEGLDELLEAIEELL 204 (204)
T ss_pred CCCCCCHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHC
T ss_conf 047995758999970899879998868949999999999559
No 9
>PRK00093 engA GTP-binding protein EngA; Reviewed
Probab=100.00 E-value=1.1e-34 Score=260.46 Aligned_cols=154 Identities=31% Similarity=0.497 Sum_probs=131.5
Q ss_pred HHCCCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCCEEECCCCCCCCCEEEEEEECCHHCC---CCHHHHHHHHHHHH
Q ss_conf 202302431146631888999985520002345468721100012456835899950810002---41035666678889
Q gi|254780809|r 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE---TDDIVEKEGIKRTF 293 (440)
Q Consensus 217 ~~g~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTTRD~i~~~~~i~g~~~~l~DTaGir~---t~d~IE~~GI~ra~ 293 (440)
.+.++|+|+|+||||||||+|+|+|++|+|||++||||||.|+..+.++|.++.|+||||+|. ..+.+|+..+.+|+
T Consensus 170 ~~~iriaiiGrpNvGKStl~N~ll~~~r~ivs~~~GtTrD~i~~~~~~~~~~~~~iDTaGirkk~k~~~~iE~~s~~~t~ 249 (438)
T PRK00093 170 EDPIKIAIIGRPNVGKSTLINALLGEERVIVSDIAGTTRDSIDTPFERDGQKYTLIDTAGIRRRGKVTEGIEKYSVIRTL 249 (438)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEECCCEEEEEECCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 55605999558886556788876543332047999851123267999899679999898987656421378899999999
Q ss_pred HHHHHHCCEEECCCCCCH---HH-----HHHHCCCCCCCCCCCCCCCCCCCH------------------HHHHHHHHHH
Q ss_conf 985030110201358985---66-----343128985322223334465420------------------0000133332
Q gi|254780809|r 294 LEVENADLILLLKEINSK---KE-----ISFPKNIDFIFIGTKSDLYSTYTE------------------EYDHLISSFT 347 (440)
Q Consensus 294 ~~i~~aDlil~v~D~~~~---~~-----~~~~~~~~~i~V~NK~Dl~~~~~~------------------~~~~~ISakt 347 (440)
++++.||++++|+|++.. ++ .....++++++++||+||.+.... .+.+++||++
T Consensus 250 ~~i~~~dvvilviDa~~~~~~qD~~i~~~i~~~gk~~ii~vNKwDLv~~~~~~~~~~~~~i~~~l~~~~~~pIvfiSA~~ 329 (438)
T PRK00093 250 KAIERADVVLLVIDATEGITEQDLRIAGLALEAGRALVIVVNKWDLVEKDSKTMEEVKEELRRRLPFLDFAPIVFISALT 329 (438)
T ss_pred HHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECHHCCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCC
T ss_conf 99864466999997665884888999999998199669999702225663899999999999756125898779985147
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 32358999999999632203588
Q gi|254780809|r 348 GEGLEELINKIKSILSNKFKKLP 370 (440)
Q Consensus 348 g~Gi~~L~~~I~~~l~~~~~~~~ 370 (440)
|.|++.|.+.+.+.........+
T Consensus 330 g~gi~kl~~~i~~v~~~~~~ri~ 352 (438)
T PRK00093 330 GQGVDKLFESILEAYESANRRIS 352 (438)
T ss_pred CCCHHHHHHHHHHHHHHHHCCCC
T ss_conf 77999999999999999605088
No 10
>PRK03003 engA GTP-binding protein EngA; Reviewed
Probab=100.00 E-value=2.2e-34 Score=258.45 Aligned_cols=151 Identities=25% Similarity=0.354 Sum_probs=129.9
Q ss_pred CCCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCCEEECCCCCCCCCEEEEEEECCHHCC---CCHHHHHHHHHHHHHH
Q ss_conf 2302431146631888999985520002345468721100012456835899950810002---4103566667888998
Q gi|254780809|r 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE---TDDIVEKEGIKRTFLE 295 (440)
Q Consensus 219 g~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTTRD~i~~~~~i~g~~~~l~DTaGir~---t~d~IE~~GI~ra~~~ 295 (440)
..+|||+|+||||||||+|+|+|++|+|||++||||||.|+..+.++|..+.|+||||+|. ..+.+|...+.||+++
T Consensus 211 ~~rIAIvGrPNvGKStL~N~llg~~r~ivs~~~GTTRDsI~~~~~~~~~~~~liDTAGiRrk~kv~~~iE~~s~~rtl~a 290 (474)
T PRK03003 211 PRRVALVGKPNVGKSSLLNKLAGEERSVVHDVAGTTVDPVDSLIELGGKVWRFVDTAGLRRKVGQASGHEFYASLRTHAA 290 (474)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCEEECCCCCCCCCCEEEEEEECCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 62799980899878899999858975674589985154405899999989999989876635533431458999999999
Q ss_pred HHHHCCEEECCCCCCH---HH-----HHHHCCCCCCCCCCCCCCCCCCCH----------------HHHHHHHHHHHHHH
Q ss_conf 5030110201358985---66-----343128985322223334465420----------------00001333323235
Q gi|254780809|r 296 VENADLILLLKEINSK---KE-----ISFPKNIDFIFIGTKSDLYSTYTE----------------EYDHLISSFTGEGL 351 (440)
Q Consensus 296 i~~aDlil~v~D~~~~---~~-----~~~~~~~~~i~V~NK~Dl~~~~~~----------------~~~~~ISaktg~Gi 351 (440)
++.||++++|+|++.. ++ ....+++++|+++||+||.+.... .+.++|||++|.|+
T Consensus 291 I~~advvilviDa~egit~QD~~Ia~~v~~~gk~~IivvNKwDLv~~~~~~~~~~~i~~~l~~~~~~piv~ISA~~g~~i 370 (474)
T PRK03003 291 IDAAEVAVVLIDASEPLTEQDQRVLSMVIEAGRALVLAFNKWDLVDEDRRYYLEREIDRELAQVRWAPRVNISAKTGRAV 370 (474)
T ss_pred HHHCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCEEEEEECHHCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCH
T ss_conf 87335579998546587499999999999809957999971441686789999999986455448985699981048798
Q ss_pred HHHHHHHHHHHHHHCCCC
Q ss_conf 899999999963220358
Q gi|254780809|r 352 EELINKIKSILSNKFKKL 369 (440)
Q Consensus 352 ~~L~~~I~~~l~~~~~~~ 369 (440)
+.|.+.+.+.+.......
T Consensus 371 ~kL~~~i~~v~~~~~krI 388 (474)
T PRK03003 371 QKLVPALETALESWDTRI 388 (474)
T ss_pred HHHHHHHHHHHHHHCCCC
T ss_conf 999999999999964739
No 11
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=100.00 E-value=2.1e-34 Score=258.49 Aligned_cols=154 Identities=33% Similarity=0.513 Sum_probs=131.0
Q ss_pred HHCCCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCCEEECCCCCCCCCEEEEEEECCHHCC---CCHHHHHHHHHHHH
Q ss_conf 202302431146631888999985520002345468721100012456835899950810002---41035666678889
Q gi|254780809|r 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE---TDDIVEKEGIKRTF 293 (440)
Q Consensus 217 ~~g~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTTRD~i~~~~~i~g~~~~l~DTaGir~---t~d~IE~~GI~ra~ 293 (440)
.+.++|+|+|+||||||||+|+|+|++|+|||++||||||.|+..+.++|.++.|+||||+|. ..+.+|+..+.+|+
T Consensus 170 ~~~iriaivGrPNvGKSTl~N~ll~~~r~ivs~~~GtTrD~i~~~~~~~~~~~~~iDTaGirkk~k~~~~~e~~s~~~t~ 249 (429)
T TIGR03594 170 DGPIKIAIIGRPNVGKSTLVNALLGEERVIVSDIAGTTRDSIDIPFERNGKKYLLIDTAGIRRKGKVTEGIEKYSVLRTL 249 (429)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEECCEEEEEEECCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 56526999748876546777776543332147999863102687999999089999898876366423047799999999
Q ss_pred HHHHHHCCEEECCCCCCH---HH-----HHHHCCCCCCCCCCCCCCCCCCCH-----------------HHHHHHHHHHH
Q ss_conf 985030110201358985---66-----343128985322223334465420-----------------00001333323
Q gi|254780809|r 294 LEVENADLILLLKEINSK---KE-----ISFPKNIDFIFIGTKSDLYSTYTE-----------------EYDHLISSFTG 348 (440)
Q Consensus 294 ~~i~~aDlil~v~D~~~~---~~-----~~~~~~~~~i~V~NK~Dl~~~~~~-----------------~~~~~ISaktg 348 (440)
++++.||++++|+|++.. .+ .....++|+++++||+|+.+.... .+.+++||++|
T Consensus 250 ~~i~~~dvvil~iD~~~~~~~qD~~i~~~i~~~~k~~ii~~NK~Dli~~~~~~~~~~~~i~~~l~~~~~~pI~fiSA~~g 329 (429)
T TIGR03594 250 KAIERADVVLLVLDATEGITEQDLRIAGLALEAGKALIIVVNKWDLVKDEKTREEFKKELRRKLPFLDFAPIVFISALTG 329 (429)
T ss_pred HHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEEHHHCCCCHHHHHHHHHHHHHHCCCCCCCCEEEEECCCC
T ss_conf 99874477999997665884888999998987399769999722303799999999999998562368986899734577
Q ss_pred HHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 2358999999999632203588
Q gi|254780809|r 349 EGLEELINKIKSILSNKFKKLP 370 (440)
Q Consensus 349 ~Gi~~L~~~I~~~l~~~~~~~~ 370 (440)
.|++.|.+.+.+.........+
T Consensus 330 ~gi~kl~~~i~~~~~~~~~rI~ 351 (429)
T TIGR03594 330 QGVDKLLDAIDEVYENANKRIS 351 (429)
T ss_pred CCHHHHHHHHHHHHHHHHCCCC
T ss_conf 8999999999999999724188
No 12
>TIGR03594 GTPase_EngA ribosome-associated GTPase EngA. EngA (YfgK, Der) is a ribosome-associated essential GTPase with a duplication of its GTP-binding domain. It is broadly to universally distributed among bacteria. It appears to function in ribosome biogenesis or stability.
Probab=100.00 E-value=1.5e-33 Score=252.69 Aligned_cols=144 Identities=31% Similarity=0.408 Sum_probs=126.0
Q ss_pred CEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCCEEECCCCCCCCCEEEEEEECCHHCCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf 02431146631888999985520002345468721100012456835899950810002410356666788899850301
Q gi|254780809|r 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 (440)
Q Consensus 221 ~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTTRD~i~~~~~i~g~~~~l~DTaGir~t~d~IE~~GI~ra~~~i~~aD 300 (440)
.|+|+|+||||||||||+|+|+++||||+.||||||.++..+.++|.++.|+||||+..+.|.+++...+++..++++||
T Consensus 1 ~VaIvGrpNVGKStLfN~L~~~~~aIv~~~~G~TRD~~~~~~~~~~~~~~liDT~G~~~~~~~~~~~~~~q~~~ai~~aD 80 (429)
T TIGR03594 1 VVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRKYGDAEWGGREFILIDTGGIEEDDDGLDKQIREQAEIAIEEAD 80 (429)
T ss_pred CEEEECCCCCCHHHHHHHHHCCCEEECCCCCCCCCCCEEEEEEECCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHCC
T ss_conf 98999999987899999987886176159899887733799999990799998989898743789999999999998679
Q ss_pred CEEECCCCCC---HHHHH-----HHCCCCCCCCCCCCCCCCCCCHH---------HHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 1020135898---56634-----31289853222233344654200---------0001333323235899999999963
Q gi|254780809|r 301 LILLLKEINS---KKEIS-----FPKNIDFIFIGTKSDLYSTYTEE---------YDHLISSFTGEGLEELINKIKSILS 363 (440)
Q Consensus 301 lil~v~D~~~---~~~~~-----~~~~~~~i~V~NK~Dl~~~~~~~---------~~~~ISaktg~Gi~~L~~~I~~~l~ 363 (440)
++|||+|+.+ +.+.. ...++|+++|+||+|........ ..+.|||.+|.|+++|++.|.+.+.
T Consensus 81 lIlfVvD~~~git~~D~~i~~~Lrk~~k~vilviNK~D~~~~~~~~~ef~~LG~~~~i~iSA~h~~Gi~~L~~~i~~~l~ 160 (429)
T TIGR03594 81 VILFVVDGREGLTPEDEEIAKWLRKSGKPVILVANKIDGKKEDAVAAEFYSLGFGEPIPISAEHGRGIGDLLDAILELLP 160 (429)
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHCC
T ss_conf 99999857768986799999999871997899998346753145699999836898688742046799999999996588
Q ss_pred H
Q ss_conf 2
Q gi|254780809|r 364 N 364 (440)
Q Consensus 364 ~ 364 (440)
.
T Consensus 161 ~ 161 (429)
T TIGR03594 161 E 161 (429)
T ss_pred C
T ss_conf 6
No 13
>PRK00093 engA GTP-binding protein EngA; Reviewed
Probab=100.00 E-value=1.7e-33 Score=252.27 Aligned_cols=146 Identities=31% Similarity=0.410 Sum_probs=125.3
Q ss_pred CCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCCEEECCCCCCCCCEEEEEEECCHHC-CCCHHHHHHHHHHHHHHHHH
Q ss_conf 30243114663188899998552000234546872110001245683589995081000-24103566667888998503
Q gi|254780809|r 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR-ETDDIVEKEGIKRTFLEVEN 298 (440)
Q Consensus 220 ~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTTRD~i~~~~~i~g~~~~l~DTaGir-~t~d~IE~~GI~ra~~~i~~ 298 (440)
+.|+|+|+||||||||||+|+|+++|||++.||||||.++..+.++|.++.|+||||+. ...|.+++...+++..++++
T Consensus 2 p~VaIvGrpNvGKStLfN~l~~~~~aIv~~~~G~TRD~~~~~~~~~~~~~~lvDT~G~~~~~~~~~~~~i~~q~~~ai~~ 81 (438)
T PRK00093 2 PVVAIVGRPNVGKSTLFNRLTGKRDAIVADTPGVTRDRIYGEAEWLGREFIVIDTGGIDPGDEDGFEKQMREQALLAIEE 81 (438)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCCCCCEEEEEEECCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 98999899998789999998688618715989998471589999999289999897989888207999999999999985
Q ss_pred HCCEEECCCCCC---HHHHH-----HHCCCCCCCCCCCCCCCCCCCHH---------HHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 011020135898---56634-----31289853222233344654200---------00013333232358999999999
Q gi|254780809|r 299 ADLILLLKEINS---KKEIS-----FPKNIDFIFIGTKSDLYSTYTEE---------YDHLISSFTGEGLEELINKIKSI 361 (440)
Q Consensus 299 aDlil~v~D~~~---~~~~~-----~~~~~~~i~V~NK~Dl~~~~~~~---------~~~~ISaktg~Gi~~L~~~I~~~ 361 (440)
||++|||+|+.+ +.+.. ...++|+++|+||+|........ ..+.|||.+|.|+++|++.|.+.
T Consensus 82 aDlIlfVvD~~~git~~D~~i~~~Lrk~~k~vilviNK~D~~~~~~~~~ef~~LGf~~~i~iSA~h~~Gi~~L~~~i~~~ 161 (438)
T PRK00093 82 ADVILFVVDGRAGLTPADEEIAKILRKSNKPVILVVNKVDGKKMEADAYEFYSLGLGEPYPISAEHGRGIGDLLDAILEL 161 (438)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHH
T ss_conf 89999998377689878999999999739978999975566320345999998368981888530566989999999854
Q ss_pred HHHH
Q ss_conf 6322
Q gi|254780809|r 362 LSNK 365 (440)
Q Consensus 362 l~~~ 365 (440)
+...
T Consensus 162 l~~~ 165 (438)
T PRK00093 162 LPEE 165 (438)
T ss_pred CCCC
T ss_conf 8855
No 14
>PRK00089 era GTP-binding protein Era; Reviewed
Probab=100.00 E-value=1.9e-33 Score=251.84 Aligned_cols=150 Identities=25% Similarity=0.374 Sum_probs=129.8
Q ss_pred HHHHCCCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCCEEECCCCCCCCCEEEEEEECCHHCCCCHHHHHHHHHHHHH
Q ss_conf 43202302431146631888999985520002345468721100012456835899950810002410356666788899
Q gi|254780809|r 215 IIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFL 294 (440)
Q Consensus 215 ~l~~g~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTTRD~i~~~~~i~g~~~~l~DTaGir~t~d~IE~~GI~ra~~ 294 (440)
..+.|+ |+|+|+||||||||+|+|+|+++||||+.||||||.+.+.+..++..+.|+||||+++..+.+++...+.++.
T Consensus 5 ~~ksG~-VaivG~PNvGKSTL~N~l~~~k~siVS~k~~TTR~~i~gi~~~~~~q~i~iDTpGi~~~~~~l~~~~~~~~~~ 83 (296)
T PRK00089 5 KFKSGF-VAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRHRIRGIVTEDDAQIIFVDTPGIHKPKRALNRAMNKAAWS 83 (296)
T ss_pred CCCEEE-EEEECCCCCCHHHHHHHHHCCCEEEECCCCCCCCCCEEEEEEECCEEEEEEECCCCCCCHHHHHHHHHHHHHH
T ss_conf 983799-9999899988899999996896176149599872838999997997999998998667467787899999999
Q ss_pred HHHHHCCEEECCCCCCH---HHHH-----HHCCCCCCCCCCCCCCCCCCCH-------------HHHHHHHHHHHHHHHH
Q ss_conf 85030110201358985---6634-----3128985322223334465420-------------0000133332323589
Q gi|254780809|r 295 EVENADLILLLKEINSK---KEIS-----FPKNIDFIFIGTKSDLYSTYTE-------------EYDHLISSFTGEGLEE 353 (440)
Q Consensus 295 ~i~~aDlil~v~D~~~~---~~~~-----~~~~~~~i~V~NK~Dl~~~~~~-------------~~~~~ISaktg~Gi~~ 353 (440)
++++||++++|+|++.. .+.. ...++|.++|+||+||.++..- ...+.|||++|.|++.
T Consensus 84 ai~~aDlil~viD~~~~~~~~d~~i~~~l~~~~kp~ilviNKiDlv~k~~l~~~~~~l~~~~~f~~if~iSA~~~~gi~~ 163 (296)
T PRK00089 84 SLKDVDLVLFVVDADEKIGPGDEFILEKLKKVKTPVILVLNKIDLVDKEELLPLLEELSELMDFAEIVPISALKGDNVDE 163 (296)
T ss_pred HHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEEHHHHCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHH
T ss_conf 99759999999857889898899999988874998899954788428988999999998537976599996778889899
Q ss_pred HHHHHHHHHHHH
Q ss_conf 999999996322
Q gi|254780809|r 354 LINKIKSILSNK 365 (440)
Q Consensus 354 L~~~I~~~l~~~ 365 (440)
|++.|.+.+...
T Consensus 164 L~~~l~~~lp~~ 175 (296)
T PRK00089 164 LLDLIAKYLPEG 175 (296)
T ss_pred HHHHHHHHCCCC
T ss_conf 999999867988
No 15
>PRK03003 engA GTP-binding protein EngA; Reviewed
Probab=100.00 E-value=5.5e-33 Score=248.71 Aligned_cols=145 Identities=22% Similarity=0.362 Sum_probs=126.2
Q ss_pred CCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCCEEECCCCCCCCCEEEEEEECCHHCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 30243114663188899998552000234546872110001245683589995081000241035666678889985030
Q gi|254780809|r 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299 (440)
Q Consensus 220 ~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTTRD~i~~~~~i~g~~~~l~DTaGir~t~d~IE~~GI~ra~~~i~~a 299 (440)
+.|+|+|+||||||||||+|+|++.|||++.||||||.++....++|.+|.|+||+|+....+.+++...+++..++++|
T Consensus 39 PiVaIvGRPNVGKStLFNrL~~~~~AIV~d~pGvTRDr~~~~~~~~~~~f~lvDTgG~~~~~~~~~~~i~~q~~~ai~ea 118 (474)
T PRK03003 39 PVVAVVGRPNVGKSTLVNRILGRREAVVEDIPGVTRDRVSYDAEWNGRRFVVQDTGGWEPDAKGLQALVAEQAEVAMRTA 118 (474)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCCCCCEEEEEEECCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHC
T ss_conf 98999899998889999998688638805989988086368999999289999799999974789999999999999869
Q ss_pred CCEEECCCCCC---HHHHH-----HHCCCCCCCCCCCCCCCCCCCHH---------HHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 11020135898---56634-----31289853222233344654200---------000133332323589999999996
Q gi|254780809|r 300 DLILLLKEINS---KKEIS-----FPKNIDFIFIGTKSDLYSTYTEE---------YDHLISSFTGEGLEELINKIKSIL 362 (440)
Q Consensus 300 Dlil~v~D~~~---~~~~~-----~~~~~~~i~V~NK~Dl~~~~~~~---------~~~~ISaktg~Gi~~L~~~I~~~l 362 (440)
|+||||+|+.. +.+.. ...++|+++|+||+|-....... ..+.|||.+|.|+++|++.|.+.+
T Consensus 119 D~IlfVvD~~~glt~~D~eia~~LRk~~kpviLVvNK~D~~~~~~~~~efy~LGf~~~i~ISA~Hg~Gi~dLld~i~~~l 198 (474)
T PRK03003 119 DAVLFVVDATVGATATDEAVARLLRRSGKPVFLAANKVDSERGEADAAALWSLGLGEPHPVSALHGRGVADLLDAVLAAL 198 (474)
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHCCCCEEEEEHHCCCCHHHHHHHHHHHC
T ss_conf 99999996898988789999999875399779986755662102348999975799869960203789799999999748
Q ss_pred HH
Q ss_conf 32
Q gi|254780809|r 363 SN 364 (440)
Q Consensus 363 ~~ 364 (440)
..
T Consensus 199 ~~ 200 (474)
T PRK03003 199 PE 200 (474)
T ss_pred CC
T ss_conf 77
No 16
>cd01894 EngA1 EngA1 subfamily. This CD represents the first GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=100.00 E-value=2.9e-33 Score=250.65 Aligned_cols=140 Identities=31% Similarity=0.413 Sum_probs=123.1
Q ss_pred EEECCCCCCHHHHHHHHHCCHHCCCCCCCCCCEEECCCCCCCCCEEEEEEECCHHCCCCHHHHHHHHHHHHHHHHHHCCE
Q ss_conf 43114663188899998552000234546872110001245683589995081000241035666678889985030110
Q gi|254780809|r 223 VILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302 (440)
Q Consensus 223 ~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTTRD~i~~~~~i~g~~~~l~DTaGir~t~d~IE~~GI~ra~~~i~~aDli 302 (440)
||+|+||||||||||+|+|+++||||++||||||.+...+.++|.++.|+||||+++..+.+++.+++++++.+++||++
T Consensus 1 aivG~pN~GKSsL~N~l~~~~~~ivs~~~gtTr~~~~~~~~~~~~~~~lvDTpG~~~~~~~~~~~~~~~~~~~i~~ad~i 80 (157)
T cd01894 1 AIVGRPNVGKSTLFNRLTGRRDAIVEDTPGVTRDRIYGEAEWGGREFILIDTGGIEPDDEGISKEIREQAELAIEEADVI 80 (157)
T ss_pred CCCCCCCCCHHHHHHHHHCCCCEEEECCCCCEEEEEEEEEEECCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHCCEE
T ss_conf 90489998899999999588753540799935667899999999889998578755566067899999999999865907
Q ss_pred EECCCCCCH---HHHH-----HHCCCCCCCCCCCCCCCCCCCH---------HHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 201358985---6634-----3128985322223334465420---------0000133332323589999999996
Q gi|254780809|r 303 LLLKEINSK---KEIS-----FPKNIDFIFIGTKSDLYSTYTE---------EYDHLISSFTGEGLEELINKIKSIL 362 (440)
Q Consensus 303 l~v~D~~~~---~~~~-----~~~~~~~i~V~NK~Dl~~~~~~---------~~~~~ISaktg~Gi~~L~~~I~~~l 362 (440)
++|+|++.. .+.. ...++|+++|+||+|+.+.... ...+.|||++|+|+++|++.|.+.+
T Consensus 81 l~viDa~~~~~~~d~~i~~~l~~~~kp~i~v~NK~D~~~~~~~~~~~~~l~~~~~i~iSA~~g~Gid~L~~~I~~~L 157 (157)
T cd01894 81 LFVVDGREGLTPADEEIAKYLRKSKKPVILVVNKVDNIKEEDEAAEFYSLGFGEPIPISAEHGRGIGDLLDAILELL 157 (157)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCHHHHHHHHHCCCCCEEEEEEECCCCHHHHHHHHHHHC
T ss_conf 99998999999899999999998479809999787165864569999965999759999658949999999999659
No 17
>pfam02421 FeoB_N Ferrous iron transport protein B. Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.98 E-value=5.8e-32 Score=241.58 Aligned_cols=166 Identities=23% Similarity=0.296 Sum_probs=128.6
Q ss_pred CEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCCEEECCCCCCCCCEEEEEEECCHHCCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf 02431146631888999985520002345468721100012456835899950810002410356666788899850301
Q gi|254780809|r 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 (440)
Q Consensus 221 ~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTTRD~i~~~~~i~g~~~~l~DTaGir~t~d~IE~~GI~ra~~~i~~aD 300 (440)
+|+|+|+||||||||||+|+|+ +++||++||||||.+...+.++|.++.|+||||++.-...-+.+++.+.....++||
T Consensus 1 tVaIvG~PNvGKSTLlN~L~g~-~~~Vs~~pGtTrd~~~~~~~~~~~~~~lvDTpGi~~~~~~~~~e~v~~~~~~~~~aD 79 (188)
T pfam02421 1 TIALVGNPNVGKTTLFNALTGA-RQHVGNWPGVTVEKKEGTFKYKGYEIEIVDLPGTYSLSPYSEEEKVARDYLLEEKPD 79 (188)
T ss_pred CEEEECCCCCCHHHHHHHHHCC-CCEEECCCCCCCCEEEEEEEECCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCC
T ss_conf 9899889998999999999599-965638999723335768752516799996888501465327899999998623687
Q ss_pred CEEECCCCCCHHH-----H-HHHCCCCCCCCCCCCCCCCCCCHH------------HHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 1020135898566-----3-431289853222233344654200------------000133332323589999999996
Q gi|254780809|r 301 LILLLKEINSKKE-----I-SFPKNIDFIFIGTKSDLYSTYTEE------------YDHLISSFTGEGLEELINKIKSIL 362 (440)
Q Consensus 301 lil~v~D~~~~~~-----~-~~~~~~~~i~V~NK~Dl~~~~~~~------------~~~~ISaktg~Gi~~L~~~I~~~l 362 (440)
++|+|+|+++... . ....++|+|+|+||+|+.++.... ..+.|||++|.|+++|++.|.+.+
T Consensus 80 lvl~vvDa~~~er~l~l~~~l~~~~~p~IvVlNK~Dl~~~~~~~~~~~~l~~~lg~~vi~ISA~~g~Gi~eL~~~I~~~~ 159 (188)
T pfam02421 80 VIINVVDATNLERNLYLTLQLLELGIPVVVALNMMDEAEKKGIKIDIKKLSELLGVPVVPTSARKGEGIDELKDAIIEVA 159 (188)
T ss_pred CEEEEEECCCHHHHHHHHHHHHHCCCCEEEEECCCHHCCCCCCHHHHHHHHHHCCCCEEEEEEECCCCHHHHHHHHHHHH
T ss_conf 36999767624544899999997699889996170201003652039999987399689999316999999999999997
Q ss_pred HHHCCCCCCCEEHHHHHHHHHHHHHHHHHH
Q ss_conf 322035886320148999999999999999
Q gi|254780809|r 363 SNKFKKLPFSIPSHKRHLYHLSQTVRYLEM 392 (440)
Q Consensus 363 ~~~~~~~~~~i~~~~Rq~~~L~~a~~~L~~ 392 (440)
....... .+.|.-+.+++++..|+.
T Consensus 160 ~~~~~~~-----~~~~~~~~~~~~~~~~~~ 184 (188)
T pfam02421 160 EGKVKPP-----LKINYGEEIEEAISELEE 184 (188)
T ss_pred HCCCCCC-----CCCCCCHHHHHHHHHHHH
T ss_conf 2689998-----016898899999999999
No 18
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=99.98 E-value=1.7e-32 Score=245.31 Aligned_cols=145 Identities=32% Similarity=0.547 Sum_probs=123.8
Q ss_pred HCCCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCCEEECCCCCCCCCEEEEEEECCHHCC---CCHHHHHHHHHHHHH
Q ss_conf 02302431146631888999985520002345468721100012456835899950810002---410356666788899
Q gi|254780809|r 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE---TDDIVEKEGIKRTFL 294 (440)
Q Consensus 218 ~g~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTTRD~i~~~~~i~g~~~~l~DTaGir~---t~d~IE~~GI~ra~~ 294 (440)
++++|+|+|+||||||||||+|+|+++++||++||||||.++..+.++|.++.|+||||+++ ..+.+|...+.+++.
T Consensus 1 ~~~~V~ivG~pN~GKSTL~N~l~g~~~~~vs~~pgtTr~~~~~~~~~~~~~~~~vDtpGi~~~~~~~~~~e~~~~~~~~~ 80 (174)
T cd01895 1 DPIRIAIIGRPNVGKSSLVNALLGEERVIVSDIAGTTRDSIDVPFEYDGKKYTLIDTAGIRRKGKVEEGIEKYSVLRTLK 80 (174)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCEEECCCCCCEEECCEEEEEECCEEEEEEECCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 99899999899998999999983898444349999157332899999998899985788421344210688999999999
Q ss_pred HHHHHCCEEECCCCCCH---HHHH-----HHCCCCCCCCCCCCCCCCCCCHH------------------HHHHHHHHHH
Q ss_conf 85030110201358985---6634-----31289853222233344654200------------------0001333323
Q gi|254780809|r 295 EVENADLILLLKEINSK---KEIS-----FPKNIDFIFIGTKSDLYSTYTEE------------------YDHLISSFTG 348 (440)
Q Consensus 295 ~i~~aDlil~v~D~~~~---~~~~-----~~~~~~~i~V~NK~Dl~~~~~~~------------------~~~~ISaktg 348 (440)
++++||++++|+|+++. .+.. ...++|+++|+||+|+.+..... ..+.|||++|
T Consensus 81 ~i~~~dvil~viDa~~~~~~~d~~i~~~l~~~~~p~iiv~NK~Dli~~~~~~~~~~~~~~~~~~~~~~~~~ii~iSA~~g 160 (174)
T cd01895 81 AIERADVVLLVIDATEGITEQDLRIAGLILEEGKALVIVVNKWDLVEKDSKTMKEFKKEIRRKLPFLDYAPIVFISALTG 160 (174)
T ss_pred HHHHCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECEECCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEECCCC
T ss_conf 99842865899758989988999999999985998699985675267647789999999998734168992899974479
Q ss_pred HHHHHHHHHHHHHH
Q ss_conf 23589999999996
Q gi|254780809|r 349 EGLEELINKIKSIL 362 (440)
Q Consensus 349 ~Gi~~L~~~I~~~l 362 (440)
.|+++|+++|.+.+
T Consensus 161 ~Gi~~L~~~I~ei~ 174 (174)
T cd01895 161 QGVDKLFDAIDEVY 174 (174)
T ss_pred CCHHHHHHHHHHHC
T ss_conf 89999999999869
No 19
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.97 E-value=2.2e-32 Score=244.56 Aligned_cols=154 Identities=34% Similarity=0.488 Sum_probs=131.4
Q ss_pred HHCCCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCCEEECCCCCCCCCEEEEEEECCHHCCC---CHHHHHHHHHHHH
Q ss_conf 2023024311466318889999855200023454687211000124568358999508100024---1035666678889
Q gi|254780809|r 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET---DDIVEKEGIKRTF 293 (440)
Q Consensus 217 ~~g~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTTRD~i~~~~~i~g~~~~l~DTaGir~t---~d~IE~~GI~ra~ 293 (440)
.++++|+|+|+||||||||+|+|+|++|+|||++||||||.|...++++|..+.|+||||+|.. .+.+|+..+.|+.
T Consensus 176 ~~~ikiaiiGrPNvGKSsLiN~ilgeeR~Iv~~~aGTTRD~I~~~~e~~~~~~~liDTAGiRrk~ki~e~~E~~Sv~rt~ 255 (444)
T COG1160 176 TDPIKIAIIGRPNVGKSSLINAILGEERVIVSDIAGTTRDSIDIEFERDGRKYVLIDTAGIRRKGKITESVEKYSVARTL 255 (444)
T ss_pred CCCEEEEEEECCCCCCHHHHHHHCCCCEEEECCCCCCCCCCEEEEEEECCEEEEEEECCCCCCCCCCCCCEEEEEEHHHH
T ss_conf 77508999927878705888775068259845999862203312589988189999877877466412426887505467
Q ss_pred HHHHHHCCEEECCCCCCHHHH--------HHHCCCCCCCCCCCCCCCCCCCH------------------HHHHHHHHHH
Q ss_conf 985030110201358985663--------43128985322223334465420------------------0000133332
Q gi|254780809|r 294 LEVENADLILLLKEINSKKEI--------SFPKNIDFIFIGTKSDLYSTYTE------------------EYDHLISSFT 347 (440)
Q Consensus 294 ~~i~~aDlil~v~D~~~~~~~--------~~~~~~~~i~V~NK~Dl~~~~~~------------------~~~~~ISakt 347 (440)
++++.||++++|+|++.+... ....+++.++|+||+|+...... ...++|||++
T Consensus 256 ~aI~~a~vvllviDa~~~~~~qD~~ia~~i~~~g~~~vIvvNKWDl~~~~~~~~~~~k~~i~~~l~~l~~a~i~~iSA~~ 335 (444)
T COG1160 256 KAIERADVVLLVIDATEGISEQDLRIAGLIEEAGRGIVIVVNKWDLVEEDEATMEEFKKKLRRKLPFLDFAPIVFISALT 335 (444)
T ss_pred HHHHHCCEEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEEEECC
T ss_conf 67865688999998887836889999999997589749999753257851667999999999872213677279997047
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 32358999999999632203588
Q gi|254780809|r 348 GEGLEELINKIKSILSNKFKKLP 370 (440)
Q Consensus 348 g~Gi~~L~~~I~~~l~~~~~~~~ 370 (440)
|.|++.|.+.+.+.........+
T Consensus 336 ~~~i~~l~~~i~~~~~~~~~ri~ 358 (444)
T COG1160 336 GQGLDKLFEAIKEIYECATRRIS 358 (444)
T ss_pred CCCHHHHHHHHHHHHHHHCCCCC
T ss_conf 87727889999999998654547
No 20
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=99.97 E-value=4.3e-32 Score=242.50 Aligned_cols=145 Identities=26% Similarity=0.383 Sum_probs=123.8
Q ss_pred HHCCCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCCEEECCCCCCCCCEEEEEEECCHHCCCCHHHHHHHHHHHHHHH
Q ss_conf 20230243114663188899998552000234546872110001245683589995081000241035666678889985
Q gi|254780809|r 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296 (440)
Q Consensus 217 ~~g~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTTRD~i~~~~~i~g~~~~l~DTaGir~t~d~IE~~GI~ra~~~i 296 (440)
|.| .|+|+|+||||||||||+|+|+++|+||++||||||.+...+.+++.++.|+||||++...+.++...++.+++.+
T Consensus 2 ~~~-~V~ivG~pN~GKSsL~N~L~~~~~a~vs~~~gtTr~~~~~~~~~~~~~~~l~DtpG~~~~~~~~~~~~~~~~~~~l 80 (168)
T cd04163 2 KSG-FVAIVGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIYTDDDAQIIFVDTPGIHKPKKKLGERMVKAAWSAL 80 (168)
T ss_pred CCC-EEEEECCCCCCHHHHHHHHHCCCEEEECCCCCEEECCCEEEEEECCEEEEEEECCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 986-8999999999999999999589703323889826344236898499789999589866514567789999999865
Q ss_pred HHHCCEEECCCCCCHH---HHH-----HHCCCCCCCCCCCCCCCCCCCH--------------HHHHHHHHHHHHHHHHH
Q ss_conf 0301102013589856---634-----3128985322223334465420--------------00001333323235899
Q gi|254780809|r 297 ENADLILLLKEINSKK---EIS-----FPKNIDFIFIGTKSDLYSTYTE--------------EYDHLISSFTGEGLEEL 354 (440)
Q Consensus 297 ~~aDlil~v~D~~~~~---~~~-----~~~~~~~i~V~NK~Dl~~~~~~--------------~~~~~ISaktg~Gi~~L 354 (440)
++||++++|+|+++.. +.. ...++|+++|+||+|+.+.... ...+.|||++|+|+++|
T Consensus 81 ~~~D~il~vvD~~~~~~~~d~~i~~~l~~~~~~~iivlNK~Dl~~~~~~~~~~~~~~~~~~~~~~vi~iSA~~g~Gid~L 160 (168)
T cd04163 81 KDVDLVLFVVDASEPIGEGDEFILELLKKSKTPVILVLNKIDLVKDKEDLLPLLEKLKELGPFAEIFPISALKGENVDEL 160 (168)
T ss_pred HCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECEEECCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHH
T ss_conf 13655899997898986677999999998099859999788704787789999999996189996899977789699999
Q ss_pred HHHHHHHH
Q ss_conf 99999996
Q gi|254780809|r 355 INKIKSIL 362 (440)
Q Consensus 355 ~~~I~~~l 362 (440)
++.|.+.+
T Consensus 161 ~~~i~~~L 168 (168)
T cd04163 161 LEEIVKYL 168 (168)
T ss_pred HHHHHHHC
T ss_conf 99999539
No 21
>PRK09518 bifunctional cytidylate kinase/GTP-binding protein; Reviewed
Probab=99.97 E-value=2.1e-31 Score=237.67 Aligned_cols=145 Identities=23% Similarity=0.341 Sum_probs=123.2
Q ss_pred CCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCCEEECCCCCCCCCEEEEEEECCHHCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 30243114663188899998552000234546872110001245683589995081000241035666678889985030
Q gi|254780809|r 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299 (440)
Q Consensus 220 ~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTTRD~i~~~~~i~g~~~~l~DTaGir~t~d~IE~~GI~ra~~~i~~a 299 (440)
+.|||+|+||||||||||+|+|+..|||+|.||+|||.++....|+|.+|.|+||+|+-...+.++..-.+.+..++++|
T Consensus 280 p~VAIVGRPNVGKSTLFNRL~g~r~AIV~d~pGvTRDR~~~~~~~~~~~F~lvDTGG~~~~~~~~~~~I~~Q~~~Ai~eA 359 (714)
T PRK09518 280 GTVAIVGRPNVGKSTLVNRILGRREAVVEDTPGVTRDRVSYDAEWAGRDFKLVDTGGWEADAEGIEAAIASQAEIAMTLA 359 (714)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCCCCCCEEEEEECCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHC
T ss_conf 87999899987689999886288416846989988375557999999169999799999883269999999999999968
Q ss_pred CCEEECCCCCCH---HH-----HHHHCCCCCCCCCCCCCCCCCCCHH---------HHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 110201358985---66-----3431289853222233344654200---------000133332323589999999996
Q gi|254780809|r 300 DLILLLKEINSK---KE-----ISFPKNIDFIFIGTKSDLYSTYTEE---------YDHLISSFTGEGLEELINKIKSIL 362 (440)
Q Consensus 300 Dlil~v~D~~~~---~~-----~~~~~~~~~i~V~NK~Dl~~~~~~~---------~~~~ISaktg~Gi~~L~~~I~~~l 362 (440)
|+||||+|+... .+ .....++|+++|.||+|-....... ..+.|||.+|.|++.|++.|.+.+
T Consensus 360 DlIlFVVD~~~Glt~~D~~ia~~LRk~~KpvilvvNK~D~~~~e~~~~ef~~LG~~e~~~ISA~Hg~G~~dLld~i~~~l 439 (714)
T PRK09518 360 DAIVFVVDGQVGMTSTDEVIARMLQRAGKPVVLVANKIDDQASEYDVAEFWKLGLGEPYSISAMHGRGVADLLDVVLDSL 439 (714)
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHCCCCCCEEEECCCCCCHHHHHHHHHHHC
T ss_conf 99999996897989789999999985699889999897887640129999965999968984735789899999999658
Q ss_pred HH
Q ss_conf 32
Q gi|254780809|r 363 SN 364 (440)
Q Consensus 363 ~~ 364 (440)
..
T Consensus 440 ~~ 441 (714)
T PRK09518 440 KQ 441 (714)
T ss_pred CC
T ss_conf 88
No 22
>COG1160 Predicted GTPases [General function prediction only]
Probab=99.97 E-value=2.2e-31 Score=237.60 Aligned_cols=143 Identities=28% Similarity=0.414 Sum_probs=124.2
Q ss_pred CCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCCEEECCCCCCCCCEEEEEEECCHHCC-CCHHHHHHHHHHHHHHHHH
Q ss_conf 302431146631888999985520002345468721100012456835899950810002-4103566667888998503
Q gi|254780809|r 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-TDDIVEKEGIKRTFLEVEN 298 (440)
Q Consensus 220 ~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTTRD~i~~~~~i~g~~~~l~DTaGir~-t~d~IE~~GI~ra~~~i~~ 298 (440)
+.|||+|+||||||||||+|+|+..|||+|.||||||.+.....|.|.+|.++||+|+-. .+|.+++.-.++|+.++++
T Consensus 4 ~~VAIVGRPNVGKSTLFNRL~g~r~AIV~D~pGvTRDr~y~~~~~~~~~f~lIDTgGl~~~~~~~l~~~i~~Qa~~Ai~e 83 (444)
T COG1160 4 PVVAIVGRPNVGKSTLFNRLTGRRIAIVSDTPGVTRDRIYGDAEWLGREFILIDTGGLDDGDEDELQELIREQALIAIEE 83 (444)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCEEEEEECCCCCCCCCCCCEEEECCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 78999899987589999887577026760699975577545069838607999789977688128999999999999976
Q ss_pred HCCEEECCCCCC---HHH-----HHHHCCCCCCCCCCCCCCCCCCCHH---------HHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 011020135898---566-----3431289853222233344654200---------00013333232358999999999
Q gi|254780809|r 299 ADLILLLKEINS---KKE-----ISFPKNIDFIFIGTKSDLYSTYTEE---------YDHLISSFTGEGLEELINKIKSI 361 (440)
Q Consensus 299 aDlil~v~D~~~---~~~-----~~~~~~~~~i~V~NK~Dl~~~~~~~---------~~~~ISaktg~Gi~~L~~~I~~~ 361 (440)
||++|||+|+.. +.+ .....++|+++|.||+|-....... ..+.|||.+|.|++.|++++.+.
T Consensus 84 ADvilfvVD~~~Git~~D~~ia~~Lr~~~kpviLvvNK~D~~~~e~~~~efyslG~g~~~~ISA~Hg~Gi~dLld~v~~~ 163 (444)
T COG1160 84 ADVILFVVDGREGITPADEEIAKILRRSKKPVILVVNKIDNLKAEELAYEFYSLGFGEPVPISAEHGRGIGDLLDAVLEL 163 (444)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEHHHCCCHHHHHHHHHHH
T ss_conf 79999998488789978999999998539988999976667304564899986478982684255356989999999975
Q ss_pred H
Q ss_conf 6
Q gi|254780809|r 362 L 362 (440)
Q Consensus 362 l 362 (440)
+
T Consensus 164 l 164 (444)
T COG1160 164 L 164 (444)
T ss_pred C
T ss_conf 6
No 23
>cd01879 FeoB Ferrous iron transport protein B (FeoB) subfamily. E. coli has an iron(II) transport system, known as feo, which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent.
Probab=99.96 E-value=1.2e-29 Score=225.59 Aligned_cols=139 Identities=25% Similarity=0.319 Sum_probs=114.7
Q ss_pred EECCCCCCHHHHHHHHHCCHHCCCCCCCCCCEEECCCCCCCCCEEEEEEECCHHCCCCHHHHHHHHHHHHHHHHHHCCEE
Q ss_conf 31146631888999985520002345468721100012456835899950810002410356666788899850301102
Q gi|254780809|r 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLIL 303 (440)
Q Consensus 224 i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTTRD~i~~~~~i~g~~~~l~DTaGir~t~d~IE~~GI~ra~~~i~~aDlil 303 (440)
|+|+||||||||||+|+|+ +++||++||||||.+...+.+++.++.|+||||++.....-+.+++.++....+++|+++
T Consensus 1 ivG~pNvGKSTL~N~L~g~-~~~vs~~pgtTrd~~~~~~~~~~~~~~lvDtpGi~~~~~~~~~e~i~~~~~~~~~~d~vl 79 (158)
T cd01879 1 LVGNPNVGKTTLFNALTGA-RQKVGNWPGVTVEKKEGRFKLGGKEIEIVDLPGTYSLSPYSEDEKVARDFLLGEKPDLIV 79 (158)
T ss_pred CCCCCCCCHHHHHHHHHCC-CCEECCCCCCEEEEEEEEEEECCEEEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCEE
T ss_conf 9798988899999999599-864617898276347889962993799997987412564135678999999851787179
Q ss_pred ECCCCCCHHH-H-----HHHCCCCCCCCCCCCCCCCCCCHH------------HHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 0135898566-3-----431289853222233344654200------------0001333323235899999999963
Q gi|254780809|r 304 LLKEINSKKE-I-----SFPKNIDFIFIGTKSDLYSTYTEE------------YDHLISSFTGEGLEELINKIKSILS 363 (440)
Q Consensus 304 ~v~D~~~~~~-~-----~~~~~~~~i~V~NK~Dl~~~~~~~------------~~~~ISaktg~Gi~~L~~~I~~~l~ 363 (440)
+|+|+++... . ....++|+++|+||+|+.++.... ..+.|||++|+|+++|++.|.+.+.
T Consensus 80 ~vvD~~~~~~~l~~~~~l~~~~~p~ivV~NK~D~~~~~~~~~~~~~l~~~~~~~ii~iSA~~g~Gi~~L~~~i~el~~ 157 (158)
T cd01879 80 NVVDATNLERNLYLTLQLLELGLPVVVALNMIDEAEKRGIKIDLDKLSELLGVPVVPTSARKGEGIDELKDAIAELAE 157 (158)
T ss_pred EEEECCHHHHHHHHHHHHHHCCCCEEEEEEHHHHHHHCCCHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 997774067768999999865998899940277655225466799999871994899987789799999999999867
No 24
>cd01897 NOG NOG1 is a nucleolar GTP-binding protein present in eukaryotes ranging from trypanosomes to humans. NOG1 is functionally linked to ribosome biogenesis and found in association with the nuclear pore complexes and identified in many preribosomal complexes. Thus, defects in NOG1 can lead to defects in 60S biogenesis. The S. cerevisiae NOG1 gene is essential for cell viability, and mutations in the predicted G motifs abrogate function. It is a member of the ODN family of GTP-binding proteins that also includes the bacterial Obg and DRG proteins.
Probab=99.96 E-value=1.2e-29 Score=225.44 Aligned_cols=138 Identities=29% Similarity=0.352 Sum_probs=109.4
Q ss_pred CCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCCEEECCCCCCCCCEEEEEEECCHHCC-C---CHHHHHHHHHHHHHH
Q ss_conf 302431146631888999985520002345468721100012456835899950810002-4---103566667888998
Q gi|254780809|r 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-T---DDIVEKEGIKRTFLE 295 (440)
Q Consensus 220 ~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTTRD~i~~~~~i~g~~~~l~DTaGir~-t---~d~IE~~GI~ra~~~ 295 (440)
++|+|+|+||||||||||+|+|++.+ |+++||||||.+.+.+.+++.++.|+||||+.+ + .+.+|+.++ .+
T Consensus 1 P~VaivG~pNvGKStL~N~L~g~~~~-v~~~p~TTr~~~~~~~~~~~~~~~liDTpGi~~~~~~~~~~ie~~~~----~~ 75 (168)
T cd01897 1 PTLVIAGYPNVGKSSLVNKLTRAKPE-VAPYPFTTKSLFVGHFDYKYLRWQVIDTPGLLDRPLEERNTIEMQAI----TA 75 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCE-ECCCCCCCCCCEEEEEEECCCEEEEECCCCCCCCCHHHHHHHHHHHH----HH
T ss_conf 97999889998899999999589860-23758723574368999837276872488655674788889999999----99
Q ss_pred HHH-HCCEEECCCCCCHH------HHH-------HHCCCCCCCCCCCCCCCCCCCH-----------HHHHHHHHHHHHH
Q ss_conf 503-01102013589856------634-------3128985322223334465420-----------0000133332323
Q gi|254780809|r 296 VEN-ADLILLLKEINSKK------EIS-------FPKNIDFIFIGTKSDLYSTYTE-----------EYDHLISSFTGEG 350 (440)
Q Consensus 296 i~~-aDlil~v~D~~~~~------~~~-------~~~~~~~i~V~NK~Dl~~~~~~-----------~~~~~ISaktg~G 350 (440)
+.. +|+++||+|+++.. ... ...++|+++|+||+|+.+.... ...+.|||++|.|
T Consensus 76 l~~~~d~il~viD~~~~~~~~~~~~~~l~~~i~~~~~~~p~i~v~NK~Dl~~~~~~~~~~~~~~~~~~~vi~ISA~~g~G 155 (168)
T cd01897 76 LAHLRAAVLFLFDPSETCGYSLEEQLSLFEEIKPLFKNKPVIVVLNKIDLLTFEDLSEIEEEEELEGEEVLKISTLTEEG 155 (168)
T ss_pred HHHCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHCCCCCEEEEECCCCCC
T ss_conf 98357768999968876784899999999987765258887999947534581007999999970899889998158969
Q ss_pred HHHHHHHHHHHH
Q ss_conf 589999999996
Q gi|254780809|r 351 LEELINKIKSIL 362 (440)
Q Consensus 351 i~~L~~~I~~~l 362 (440)
+++|+++|.+.+
T Consensus 156 i~~L~~~i~ell 167 (168)
T cd01897 156 VDEVKNKACELL 167 (168)
T ss_pred HHHHHHHHHHHC
T ss_conf 999999999963
No 25
>COG1159 Era GTPase [General function prediction only]
Probab=99.95 E-value=1.9e-28 Score=217.25 Aligned_cols=159 Identities=25% Similarity=0.323 Sum_probs=131.8
Q ss_pred HHHCCCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCCEEECCCCCCCCCEEEEEEECCHHCCCCHHHHHHHHHHHHHH
Q ss_conf 32023024311466318889999855200023454687211000124568358999508100024103566667888998
Q gi|254780809|r 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295 (440)
Q Consensus 216 l~~g~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTTRD~i~~~~~i~g~~~~l~DTaGir~t~d~IE~~GI~ra~~~ 295 (440)
.+.|+ |+|+|+||||||||+|+|+|++.||||+.|.|||..|.+-+..+...+.|+||||+++......+...+-+++.
T Consensus 4 ~ksGf-VaIiGrPNvGKSTLlN~l~G~KisIvS~k~QTTR~~I~GI~t~~~~QiIfvDTPGih~pk~~l~~~m~~~a~~s 82 (298)
T COG1159 4 FKSGF-VAIIGRPNVGKSTLLNALVGQKISIVSPKPQTTRNRIRGIVTTDNAQIIFVDTPGIHKPKHALGELMNKAARSA 82 (298)
T ss_pred CEEEE-EEEECCCCCCHHHHHHHHHCCCEEEECCCCCHHHHHEEEEEECCCCEEEEEECCCCCCCCHHHHHHHHHHHHHH
T ss_conf 36899-99986998768999989856825751598531144214799869844999848988876517889999999987
Q ss_pred HHHHCCEEECCCCCCHH------HHHHHC--CCCCCCCCCCCCCCCCCCH--------------HHHHHHHHHHHHHHHH
Q ss_conf 50301102013589856------634312--8985322223334465420--------------0000133332323589
Q gi|254780809|r 296 VENADLILLLKEINSKK------EISFPK--NIDFIFIGTKSDLYSTYTE--------------EYDHLISSFTGEGLEE 353 (440)
Q Consensus 296 i~~aDlil~v~D~~~~~------~~~~~~--~~~~i~V~NK~Dl~~~~~~--------------~~~~~ISaktg~Gi~~ 353 (440)
+.++|++|||+|+.... .+..++ +.|+++++||+|..+.... ...+.|||++|.|++.
T Consensus 83 l~dvDlilfvvd~~~~~~~~d~~il~~lk~~~~pvil~iNKID~~~~~~~l~~~~~~~~~~~~f~~ivpiSA~~g~n~~~ 162 (298)
T COG1159 83 LKDVDLILFVVDADEGWGPGDEFILEQLKKTKTPVILVVNKIDKVKPKTVLLKLIAFLKKLLPFKEIVPISALKGDNVDT 162 (298)
T ss_pred HCCCCEEEEEEECCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHH
T ss_conf 24575999998666568910799999776438986999984025784778999999998508830179951015678899
Q ss_pred HHHHHHHHHHHHCCCCCCCEEH
Q ss_conf 9999999963220358863201
Q gi|254780809|r 354 LINKIKSILSNKFKKLPFSIPS 375 (440)
Q Consensus 354 L~~~I~~~l~~~~~~~~~~i~~ 375 (440)
|.+.+.+.+......-+...++
T Consensus 163 L~~~i~~~Lpeg~~~yp~d~it 184 (298)
T COG1159 163 LLEIIKEYLPEGPWYYPEDQIT 184 (298)
T ss_pred HHHHHHHHCCCCCCCCCHHHCC
T ss_conf 9999998588888848856515
No 26
>cd00880 Era_like Era (E. coli Ras-like protein)-like. This family includes several distinct subfamilies (TrmE/ThdF, FeoB, YihA (EngG), Era, and EngA/YfgK) that generally show sequence conservation in the region between the Walker A and B motifs (G1 and G3 box motifs), to the exclusion of other GTPases. TrmE is ubiquitous in bacteria and is a widespread mitochondrial protein in eukaryotes, but is absent from archaea. The yeast member of TrmE family, MSS1, is involved in mitochondrial translation; bacterial members are often present in translation-related operons. FeoB represents an unusual adaptation of GTPases for high-affinity iron (II) transport. YihA (EngB) family of GTPases is typified by the E. coli YihA, which is an essential protein involved in cell division control. Era is characterized by a distinct derivative of the KH domain (the pseudo-KH domain) which is located C-terminal to the GTPase domain. EngA and its orthologs are composed of two GTPase domains and, since the se
Probab=99.95 E-value=6.6e-29 Score=220.39 Aligned_cols=138 Identities=33% Similarity=0.436 Sum_probs=114.0
Q ss_pred EECCCCCCHHHHHHHHHCCHHCCCCCCCCCCEEECCCCCCCCC-EEEEEEECCHHCCCCHHHHHHHHHHHHHHHHHHCCE
Q ss_conf 3114663188899998552000234546872110001245683-589995081000241035666678889985030110
Q gi|254780809|r 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG-YLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302 (440)
Q Consensus 224 i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTTRD~i~~~~~i~g-~~~~l~DTaGir~t~d~IE~~GI~ra~~~i~~aDli 302 (440)
|+|+||||||||+|+|+|+++++||++||||||.+...+.+.+ .++.|+||||+++.... +....+++++.++.||++
T Consensus 1 ivG~~N~GKStL~N~L~~~~~~~vs~~~gtT~~~~~~~~~~~~~~~i~lvDtpG~~~~~~~-~~~~~~~~~~~~~~~D~i 79 (163)
T cd00880 1 LFGRTNAGKSSLLNALLGQEVAIVSPVPGTTTDPVEYVWELGPLGPVVLIDTPGIDEAGGL-GREREELARRVLERADLI 79 (163)
T ss_pred CCCCCCCCHHHHHHHHHCCCCCEECCCCCEECCCEEEEEEECCCCEEEEEECCCCCCCCCH-HHHHHHHHHHHHHHCCEE
T ss_conf 9197998999999999589961016989986564589999547865999727985222310-168999999999868989
Q ss_pred EECCCCCCHHH---H-----HHHCCCCCCCCCCCCCCCCCCCH----------------HHHHHHHHHHHHHHHHHHHHH
Q ss_conf 20135898566---3-----43128985322223334465420----------------000013333232358999999
Q gi|254780809|r 303 LLLKEINSKKE---I-----SFPKNIDFIFIGTKSDLYSTYTE----------------EYDHLISSFTGEGLEELINKI 358 (440)
Q Consensus 303 l~v~D~~~~~~---~-----~~~~~~~~i~V~NK~Dl~~~~~~----------------~~~~~ISaktg~Gi~~L~~~I 358 (440)
+||+|++.... . ....++|+++|+||+|+.+.... ...+.|||++|.|+++|++.|
T Consensus 80 l~viD~~~~~~~~~~~~l~~l~~~~~p~i~v~NK~D~~~~~~~~~~~~~~~~~~~~~~~~~i~~iSA~~g~gi~~L~~~i 159 (163)
T cd00880 80 LFVVDADLRADEEEEKLLELLRERGKPVLLVLNKIDLLPEEEEEELLELRLLILLLLLGLPVIAVSALTGEGIDELREAL 159 (163)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHCCCEEEEEECEECCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHH
T ss_conf 99987899975566999999997197427885342067878999999999999876799859999789897999999999
Q ss_pred HHHH
Q ss_conf 9996
Q gi|254780809|r 359 KSIL 362 (440)
Q Consensus 359 ~~~l 362 (440)
.+.+
T Consensus 160 ~e~L 163 (163)
T cd00880 160 IEAL 163 (163)
T ss_pred HHHC
T ss_conf 9519
No 27
>cd01898 Obg Obg subfamily. The Obg nucleotide binding protein subfamily has been implicated in stress response, chromosome partitioning, replication initiation, mycelium development, and sporulation. Obg proteins are among a large group of GTP binding proteins conserved from bacteria to humans. The E. coli homolog, ObgE is believed to function in ribosomal biogenesis. Members of the subfamily contain two equally and highly conserved domains, a C-terminal GTP binding domain and an N-terminal glycine-rich domain.
Probab=99.95 E-value=1.7e-28 Score=217.61 Aligned_cols=140 Identities=26% Similarity=0.331 Sum_probs=108.8
Q ss_pred CEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCCEEECCCCCCC-CCEEEEEEECCHHCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 02431146631888999985520002345468721100012456-83589995081000241035666678889985030
Q gi|254780809|r 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299 (440)
Q Consensus 221 ~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTTRD~i~~~~~i-~g~~~~l~DTaGir~t~d~IE~~GI~ra~~~i~~a 299 (440)
.|||+|+||||||||||+|+|++.+ |+++||||||.+.+.+.+ ++.++.|+||||+++...+-+..| .+.++.++.|
T Consensus 2 ~VAiiG~pNvGKSTLlN~l~~~~~~-V~~~pgTT~~~~~g~i~~~~~~~i~~~DtpGi~~~~~~~~~l~-~~~l~~i~~a 79 (170)
T cd01898 2 DVGLVGLPNAGKSTLLSAISNAKPK-IADYPFTTLVPNLGVVRVDDGRSFVVADIPGLIEGASEGKGLG-HRFLRHIERT 79 (170)
T ss_pred CEEEECCCCCCHHHHHHHHHCCCCE-EECCCCCCCCCEEEEEEECCCCEEEEECCCCCCCCCCCCCCHH-HHHHHCCCCC
T ss_conf 5899899999899999999678760-3256665237447799936985699964886444554662248-9998613345
Q ss_pred CCEEECCCCCCHHH----HHH-----------HCCCCCCCCCCCCCCCCCCCH-------------HHHHHHHHHHHHHH
Q ss_conf 11020135898566----343-----------128985322223334465420-------------00001333323235
Q gi|254780809|r 300 DLILLLKEINSKKE----ISF-----------PKNIDFIFIGTKSDLYSTYTE-------------EYDHLISSFTGEGL 351 (440)
Q Consensus 300 Dlil~v~D~~~~~~----~~~-----------~~~~~~i~V~NK~Dl~~~~~~-------------~~~~~ISaktg~Gi 351 (440)
|++++|+|++.... ... ..++|.++|+||+|+.++... ...+.|||++|+|+
T Consensus 80 dvil~vvD~~~~~~~~~~~~~i~~~l~~~~~~~~~kp~ilv~NK~Dl~~~~~~~~~~~~~~~~~~~~~vi~iSA~~g~gi 159 (170)
T cd01898 80 RLLLHVIDLSGDDDPVEDYKTIRNELELYNPELLEKPRIVVLNKIDLLDEEELFELLKELLKELWGKPVFPISALTGEGL 159 (170)
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHHHHHCHHHHCCCCEEEEEHHHCCCHHHHHHHHHHHHHHCCCCCEEEEECCCCCCH
T ss_conf 61799998998789899999999999982744403865067762024283563899999998569995899975479799
Q ss_pred HHHHHHHHHHH
Q ss_conf 89999999996
Q gi|254780809|r 352 EELINKIKSIL 362 (440)
Q Consensus 352 ~~L~~~I~~~l 362 (440)
++|++.|.+.+
T Consensus 160 ~~L~~~I~~~L 170 (170)
T cd01898 160 DELLRKLAELL 170 (170)
T ss_pred HHHHHHHHHHC
T ss_conf 99999999669
No 28
>PRK00454 engB GTPase EngB; Reviewed
Probab=99.95 E-value=2.5e-28 Score=216.35 Aligned_cols=143 Identities=27% Similarity=0.269 Sum_probs=103.5
Q ss_pred HCCCEEEECCCCCCHHHHHHHHHCCHH-CCCCCCCCCCEEECCCCCCCCCEEEEEEECCHHCC---CCHHHHHH--HHHH
Q ss_conf 023024311466318889999855200-02345468721100012456835899950810002---41035666--6788
Q gi|254780809|r 218 NGYKIVILGHSNAGKSSLFNALAKKDV-AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE---TDDIVEKE--GIKR 291 (440)
Q Consensus 218 ~g~~v~i~G~pN~GKSSL~N~L~~~~~-aIVs~~~GTTRD~i~~~~~i~g~~~~l~DTaGir~---t~d~IE~~--GI~r 291 (440)
++++|||+|+||||||||||+|+|+++ ||||++||||||+.- ...|..+.|+||||+.- +....++. -++.
T Consensus 23 ~~p~VaivGrpNvGKSTL~N~L~g~k~~a~vs~~pgtTr~i~~---~~~~~~~~lvDtpGyG~a~~~~~~~~~~~~~i~~ 99 (196)
T PRK00454 23 DGPEIAFAGRSNVGKSSLINALTNRKNLARTSKTPGRTQLINF---FEVNDGLRLVDLPGYGYAKVSKEEKEKWQKLIEE 99 (196)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCEEEEECCCCCEEEEEE---EECCCCEEEEECCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 8968999848988899999998689736997478886079888---7618833899379974132778788899999999
Q ss_pred HHHHHHHHCCEEECCCCCCH---HHH-----HHHCCCCCCCCCCCCCCCCCCCH-----------------HHHHHHHHH
Q ss_conf 89985030110201358985---663-----43128985322223334465420-----------------000013333
Q gi|254780809|r 292 TFLEVENADLILLLKEINSK---KEI-----SFPKNIDFIFIGTKSDLYSTYTE-----------------EYDHLISSF 346 (440)
Q Consensus 292 a~~~i~~aDlil~v~D~~~~---~~~-----~~~~~~~~i~V~NK~Dl~~~~~~-----------------~~~~~ISak 346 (440)
.+....+.+.+++|+|++.. .+. ....++|+++|+||+|+.++... ...+.|||+
T Consensus 100 yl~~~~~l~~villIDa~~g~~~~D~~i~~~l~~~~~p~iivlNKiD~l~~~~~~~~~~~i~~~l~~~~~~~~ii~ISA~ 179 (196)
T PRK00454 100 YLQKRENLKGVVLLIDSRHPLKELDLEMIEWLKEAGIPVLIVLTKADKLKKGERKKLLKKVKKALARFAADPEVLLFSSL 179 (196)
T ss_pred HHHHHHCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEECCHHCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECC
T ss_conf 99962333638999971658988899999999862778599998725169789999999999997612589828999699
Q ss_pred HHHHHHHHHHHHHHHHH
Q ss_conf 23235899999999963
Q gi|254780809|r 347 TGEGLEELINKIKSILS 363 (440)
Q Consensus 347 tg~Gi~~L~~~I~~~l~ 363 (440)
+|.|+++|++.|.+.+.
T Consensus 180 ~g~GI~eL~~~I~k~Lk 196 (196)
T PRK00454 180 KKTGIDELRAAIAKWLK 196 (196)
T ss_pred CCCCHHHHHHHHHHHHC
T ss_conf 99798999999999859
No 29
>TIGR03156 GTP_HflX GTP-binding protein HflX. This protein family is one of a number of homologous small, well-conserved GTP-binding proteins with pleiotropic effects. Bacterial members are designated HflX, following the naming convention in Escherichia coli where HflX is encoded immediately downstream of the RNA chaperone Hfq, and immediately upstream of HflKC, a membrane-associated protease pair with an important housekeeping function. Over large numbers of other bacterial genomes, the pairing with hfq is more significant than with hflK and hlfC. The gene from Homo sapiens in this family has been named PGPL (pseudoautosomal GTP-binding protein-like).
Probab=99.94 E-value=7.9e-27 Score=205.95 Aligned_cols=174 Identities=30% Similarity=0.378 Sum_probs=141.2
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHH--HHHHC-CCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCCEEECCCCC
Q ss_conf 33258888640100011212333223455--43202-3024311466318889999855200023454687211000124
Q gi|254780809|r 186 NFSSKEVLNDILFLKNDISSHISQGKLGE--IIRNG-YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL 262 (440)
Q Consensus 186 ~~~~~~~~~~i~~i~~~l~~ll~~~~~~~--~l~~g-~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTTRD~i~~~~ 262 (440)
+.+...+.+++..++++|+++-++....+ +.+.| +.|+|+|+||||||||||+|++.+. .|.|.+++|.|.....+
T Consensus 153 E~drR~i~~rI~~lk~~L~~v~~~R~~~R~~R~~~~~p~ValVGYTNAGKSTL~n~Lt~~~~-~~~d~lFaTLd~t~r~~ 231 (351)
T TIGR03156 153 ETDRRLIRERIAQLKKELEKVEKQRERQRRRRKRAGVPTVALVGYTNAGKSTLFNALTGADV-YAADQLFATLDPTTRRL 231 (351)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHCCC-CCCCCCEEECCCCCCEE
T ss_conf 99999999999999999999999999999987634997699966788778999999851776-41034313536732048
Q ss_pred CC-CCEEEEEEECCHH-CC-CCHHHHHHHHHHHHHHHHHHCCEEECCCCCCHHHHHH------------HCCCCCCCCCC
Q ss_conf 56-8358999508100-02-4103566667888998503011020135898566343------------12898532222
Q gi|254780809|r 263 DL-EGYLVKISDTAGI-RE-TDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISF------------PKNIDFIFIGT 327 (440)
Q Consensus 263 ~i-~g~~~~l~DTaGi-r~-t~d~IE~~GI~ra~~~i~~aDlil~v~D~~~~~~~~~------------~~~~~~i~V~N 327 (440)
.+ +|.++.++||.|+ ++ +.+.||.. +.|++++..||++|+|+|++++..... ..++|.|.|+|
T Consensus 232 ~l~~~~~~ll~DTVGFI~~LP~~Li~aF--~sTLee~~~aDlllhVvD~S~~~~~~~~~~v~~~L~elg~~~~p~i~V~N 309 (351)
T TIGR03156 232 DLPDGGEVLLTDTVGFIRDLPHELVAAF--RATLEEVREADLLLHVVDASDPDREEQIEAVEEVLEELGAEDIPQLLVYN 309 (351)
T ss_pred ECCCCCEEEEEECCCHHHHCCHHHHHHH--HHHHHHHHHCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEE
T ss_conf 8799976999815005630886799999--99999998598999980588847899999999999976999998899996
Q ss_pred CCCCCCCCCH-------HHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 3334465420-------0000133332323589999999996
Q gi|254780809|r 328 KSDLYSTYTE-------EYDHLISSFTGEGLEELINKIKSIL 362 (440)
Q Consensus 328 K~Dl~~~~~~-------~~~~~ISaktg~Gi~~L~~~I~~~l 362 (440)
|+|+.+.... ...++|||++|+|++.|++.|.+.+
T Consensus 310 KiD~~~~~~~~~~~~~~~~~v~ISA~~g~gi~~L~~~I~~~L 351 (351)
T TIGR03156 310 KIDLLDEPRIERLEEGYPEAVFVSAKTGEGLDLLLEAIAERL 351 (351)
T ss_pred CHHCCCHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHC
T ss_conf 701589577899873799879996899989999999999559
No 30
>cd01876 YihA_EngB The YihA (EngB) subfamily. This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target.
Probab=99.94 E-value=3.4e-27 Score=208.48 Aligned_cols=139 Identities=27% Similarity=0.293 Sum_probs=103.4
Q ss_pred CEEEECCCCCCHHHHHHHHHCCHH-CCCCCCCCCCEEECCCCCCCCCEEEEEEECCHHCC-----CCHHHHHHHHHHHHH
Q ss_conf 024311466318889999855200-02345468721100012456835899950810002-----410356666788899
Q gi|254780809|r 221 KIVILGHSNAGKSSLFNALAKKDV-AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE-----TDDIVEKEGIKRTFL 294 (440)
Q Consensus 221 ~v~i~G~pN~GKSSL~N~L~~~~~-aIVs~~~GTTRD~i~~~~~i~g~~~~l~DTaGir~-----t~d~IE~~GI~ra~~ 294 (440)
.|+|+|+||||||||||+|+|+++ |+||++|||||++... .+ |..+.|+||||+.. .........++.+++
T Consensus 1 eIaivG~pN~GKSTL~N~L~~~~~~~~vs~~~gtTr~i~~~--~~-~~~~~~vDtPG~g~~~~~~~~~~~~~~~~~~~l~ 77 (170)
T cd01876 1 EIAFAGRSNVGKSSLINALTNRKKLARTSKTPGKTQLINFF--NV-NDKFRLVDLPGYGYAKVSKEVKEKWGKLIEEYLE 77 (170)
T ss_pred CEEEECCCCCCHHHHHHHHHCCCCEEEEECCCCEEEEEEEE--EE-CCEEEEEECCCCHHCCCCHHHHHHHHHHHHHHHH
T ss_conf 98999899999999999996899627860789778520588--53-8779999657840101687799999999999998
Q ss_pred HHHHHCCEEECCCCCCH---HHHH-----HHCCCCCCCCCCCCCCCCCCCH-----------------HHHHHHHHHHHH
Q ss_conf 85030110201358985---6634-----3128985322223334465420-----------------000013333232
Q gi|254780809|r 295 EVENADLILLLKEINSK---KEIS-----FPKNIDFIFIGTKSDLYSTYTE-----------------EYDHLISSFTGE 349 (440)
Q Consensus 295 ~i~~aDlil~v~D~~~~---~~~~-----~~~~~~~i~V~NK~Dl~~~~~~-----------------~~~~~ISaktg~ 349 (440)
..+.+|++++|+|++.. .+.. ...++|+++|+||+|+.+.... ...+.|||++|.
T Consensus 78 ~~~~~~~vi~viD~~~~~~~~d~~i~~~l~~~~kp~iiVlNKiDlv~~~~~~~~~~~~~~~l~~~~~~~~ii~iSA~~g~ 157 (170)
T cd01876 78 NRENLKGVVLLIDSRHGPTEIDLEMLDWLEELGIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPPIILFSSLKGQ 157 (170)
T ss_pred HHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCC
T ss_conf 40633499999963223748689999999876998799998675378778999999999987421799839999889997
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 3589999999996
Q gi|254780809|r 350 GLEELINKIKSIL 362 (440)
Q Consensus 350 Gi~~L~~~I~~~l 362 (440)
|+++|++.|.+.+
T Consensus 158 gi~~L~~~I~~~L 170 (170)
T cd01876 158 GIDELRALIEKWL 170 (170)
T ss_pred CHHHHHHHHHHHC
T ss_conf 7999999999859
No 31
>cd01881 Obg_like The Obg-like subfamily consists of five well-delimited, ancient subfamilies, namely Obg, DRG, YyaF/YchF, Ygr210, and NOG1. Four of these groups (Obg, DRG, YyaF/YchF, and Ygr210) are characterized by a distinct glycine-rich motif immediately following the Walker B motif (G3 box). Obg/CgtA is an essential gene that is involved in the initiation of sporulation and DNA replication in the bacteria Caulobacter and Bacillus, but its exact molecular role is unknown. Furthermore, several OBG family members possess a C-terminal RNA-binding domain, the TGS domain, which is also present in threonyl-tRNA synthetase and in bacterial guanosine polyphosphatase SpoT. Nog1 is a nucleolar protein that might function in ribosome assembly. The DRG and Nog1 subfamilies are ubiquitous in archaea and eukaryotes, the Ygr210 subfamily is present in archaea and fungi, and the Obg and YyaF/YchF subfamilies are ubiquitous in bacteria and eukaryotes. The Obg/Nog1 and DRG subfamilies appear to
Probab=99.94 E-value=6.6e-27 Score=206.50 Aligned_cols=137 Identities=26% Similarity=0.304 Sum_probs=105.9
Q ss_pred EECCCCCCHHHHHHHHHCCHHCCCCCCCCCCEEECCCCCCCC-CEEEEEEECCHHCCCCHHHHHHHHHHHHHHHHHHCCE
Q ss_conf 311466318889999855200023454687211000124568-3589995081000241035666678889985030110
Q gi|254780809|r 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLI 302 (440)
Q Consensus 224 i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTTRD~i~~~~~i~-g~~~~l~DTaGir~t~d~IE~~GI~ra~~~i~~aDli 302 (440)
|+|+||||||||||+|+|.+ +.|+++||||||.+.+.+.+. +.++.|+||||+.+....-+.. +++.++.++++|++
T Consensus 1 ivG~PNvGKSTL~N~Lt~~~-~~v~~~pgTTr~~~~g~~~~~~~~~i~~~DtpGi~~~~~~~~~~-~~~~l~~~~~~d~i 78 (176)
T cd01881 1 LVGLPNVGKSTLLNALTNAK-PKVANYPFTTLEPNLGVVEVPDGARIQVADIPGLIEGASEGRGL-GNQFLAHIRRADAI 78 (176)
T ss_pred CCCCCCCCHHHHHHHHHCCC-CEEECCCCCEEEEEEEEEEECCCCEEEEEECCCCCCCCHHHHHH-HHHHHHHHHCCCEE
T ss_conf 96999888999999996899-60307899676124679994799669999578754573378789-99999874108899
Q ss_pred EECCCCCCHHH---------HH----------------HHCCCCCCCCCCCCCCCCCCCH-------------HHHHHHH
Q ss_conf 20135898566---------34----------------3128985322223334465420-------------0000133
Q gi|254780809|r 303 LLLKEINSKKE---------IS----------------FPKNIDFIFIGTKSDLYSTYTE-------------EYDHLIS 344 (440)
Q Consensus 303 l~v~D~~~~~~---------~~----------------~~~~~~~i~V~NK~Dl~~~~~~-------------~~~~~IS 344 (440)
++|+|++.... .. ...++|+++|+||+|+.+.... ...+.||
T Consensus 79 l~vvD~~~~~~~~~~~~~~~~~~i~~el~~~~~~~~~~~~~~kp~i~v~NK~Dl~~~~~~~~~~~~~~~~~~~~~ii~iS 158 (176)
T cd01881 79 LHVVDASEDDDIGGVDPLEDYEILNAELKLYDLETILGLLTAKPVIYVLNKIDLDDAEELEEELVRELALEEGAEVVPIS 158 (176)
T ss_pred EEEEECCCCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHCCCCEEEEEECEECCCHHHHHHHHHHHHHHCCCCCEEEEE
T ss_conf 99998987655454458999999999999711566555432697199996860347003159999999746899589997
Q ss_pred HHHHHHHHHHHHHHHHHH
Q ss_conf 332323589999999996
Q gi|254780809|r 345 SFTGEGLEELINKIKSIL 362 (440)
Q Consensus 345 aktg~Gi~~L~~~I~~~l 362 (440)
|++|.|+++|+++|.+.+
T Consensus 159 A~~~~gi~~L~~~i~~~L 176 (176)
T cd01881 159 AKTEEGLDELIRAIYELL 176 (176)
T ss_pred CCCCCCHHHHHHHHHHHC
T ss_conf 778879999999999659
No 32
>cd01896 DRG The developmentally regulated GTP-binding protein (DRG) subfamily is an uncharacterized member of the Obg family, an evolutionary branch of GTPase superfamily proteins. GTPases act as molecular switches regulating diverse cellular processes. DRG2 and DRG1 comprise the DRG subfamily in eukaryotes. In view of their widespread expression in various tissues and high conservation among distantly related species in eukaryotes and archaea, DRG proteins may regulate fundamental cellular processes. It is proposed that the DRG subfamily proteins play their physiological roles through RNA binding.
Probab=99.93 E-value=1.5e-26 Score=203.96 Aligned_cols=142 Identities=24% Similarity=0.310 Sum_probs=113.4
Q ss_pred CCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCCEEECCCCCCCCCEEEEEEECCHHCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 30243114663188899998552000234546872110001245683589995081000241035666678889985030
Q gi|254780809|r 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299 (440)
Q Consensus 220 ~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTTRD~i~~~~~i~g~~~~l~DTaGir~t~d~IE~~GI~ra~~~i~~a 299 (440)
.+|+|+|+||||||||||+|++.+ +.|+++|+||||.+.+.+.+.|.++.|+||||+.+....=...| +..+..++.|
T Consensus 1 a~V~LVG~PN~GKSTLln~LT~a~-~~v~~ypfTT~~pi~g~~~~~~~~iqlvDtPGli~~a~~g~g~g-~~~l~~~r~a 78 (233)
T cd01896 1 ARVALVGFPSVGKSTLLSKLTNTK-SEVAAYEFTTLTCVPGVLEYKGAKIQLLDLPGIIEGAADGKGRG-RQVIAVARTA 78 (233)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC-CCCCCCCCCCCCCEEEEEEECCEEEEEEECCCCCCCCCCCCCHH-HHHHHHHHHC
T ss_conf 959999999999999999997899-54369897875747779998998999996730024633332068-9999998758
Q ss_pred CCEEECCCCCCHHHH--------H-----------------------------------------H--------------
Q ss_conf 110201358985663--------4-----------------------------------------3--------------
Q gi|254780809|r 300 DLILLLKEINSKKEI--------S-----------------------------------------F-------------- 316 (440)
Q Consensus 300 Dlil~v~D~~~~~~~--------~-----------------------------------------~-------------- 316 (440)
|++++|+|++++... . .
T Consensus 79 D~il~VvD~~~~~~~~~~i~~eLe~~gi~l~~~~~~v~i~~~~~~gi~i~~~~~~~~~~~~~v~~il~e~~i~~a~v~i~ 158 (233)
T cd01896 79 DLILMVLDATKPEGHREILERELEGVGIRLNKRPPNITIKKKKKGGINITSTVPLTKLDEKTIKAILREYKIHNADVLIR 158 (233)
T ss_pred CEEEEEEECCCCHHHHHHHHHHHHHHCCCCCCCCCCCEEEEECCCCEEEECCCCCCCCCHHHHHHHHHHHCCCCCEEEEC
T ss_conf 99999984798266789999999860511035787625777135867860456666688899999999827676437860
Q ss_pred ---------------HCCCCCCCCCCCCCCCCCCC------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf ---------------12898532222333446542------000001333323235899999999963
Q gi|254780809|r 317 ---------------PKNIDFIFIGTKSDLYSTYT------EEYDHLISSFTGEGLEELINKIKSILS 363 (440)
Q Consensus 317 ---------------~~~~~~i~V~NK~Dl~~~~~------~~~~~~ISaktg~Gi~~L~~~I~~~l~ 363 (440)
...+|.++|+||+|+.+... ....+.|||++|.|+++|+++|.+.+.
T Consensus 159 ~~~t~dd~~d~i~~n~~y~P~i~V~NKiDl~~~ee~~~~~~~~~~i~ISA~~g~gld~L~~~I~~~L~ 226 (233)
T cd01896 159 EDITVDDLIDVIEGNRVYIPCLYVYNKIDLISIEELDLLARQPNSVVISAEKGLNLDELKERIWDKLG 226 (233)
T ss_pred CCCCHHHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 57888898998735767673799997403699899998646798599988889898999999999839
No 33
>PRK11058 putative GTPase HflX; Provisional
Probab=99.93 E-value=1.2e-25 Score=197.81 Aligned_cols=224 Identities=21% Similarity=0.306 Sum_probs=163.5
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCC--CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--HHHHHC
Q ss_conf 98875314310245665677699888654443113--54431123325888864010001121233322345--543202
Q gi|254780809|r 144 RLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDF--SEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLG--EIIRNG 219 (440)
Q Consensus 144 ~~a~~~l~G~ls~~i~~lr~~L~~~~a~iEa~IDF--~dEedi~~~~~~~~~~~i~~i~~~l~~ll~~~~~~--~~l~~g 219 (440)
+..+.+|.=.+.+....|. .+-.. -..+-+ |-|-.+ +.+...+..++..++++|+++-++.... ++.+.|
T Consensus 123 QVeLA~L~Y~lpRL~~~~~-~l~r~----~gg~g~rG~GEt~l-E~drR~i~~ri~~l~~~L~~v~~~r~~~R~~R~~~~ 196 (426)
T PRK11058 123 QVELAQLRHLATRLVRGWT-HLERQ----KGGIGLRGPGETQL-ETDRRLLRNRIVQILSRLERVEKQREQGRRSRIKAD 196 (426)
T ss_pred HHHHHHCHHHHHHHHCCCC-HHHCC----CCCCCCCCCCEEHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 9999826043322313420-12104----78776788870149-999999999999999999999999999999864069
Q ss_pred -CCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCCEEECCCCCCCC-CEEEEEEECCHH-CC-CCHHHHHHHHHHHHHH
Q ss_conf -3024311466318889999855200023454687211000124568-358999508100-02-4103566667888998
Q gi|254780809|r 220 -YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGI-RE-TDDIVEKEGIKRTFLE 295 (440)
Q Consensus 220 -~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTTRD~i~~~~~i~-g~~~~l~DTaGi-r~-t~d~IE~~GI~ra~~~ 295 (440)
+.|+++|++|||||||||+|++.+. .+-|...+|-|.-...+.+. |.++.|.||.|+ |+ +.+.||.. +-|+++
T Consensus 197 ~~~ValVGYTNAGKSTL~n~Lt~~~v-~~~d~LFATLD~t~R~~~l~~~~~~lltDTVGFI~~LP~~LveAF--~sTLeE 273 (426)
T PRK11058 197 VPTVSLVGYTNAGKSTLFNRITEARV-YAADQLFATLDPTLRRIDVADVGETVLADTVGFIRHLPHDLVAAF--KATLQE 273 (426)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCC-CCCCCCCCCCCCCEEEEECCCCCEEEEECCCHHHHHCCHHHHHHH--HHHHHH
T ss_conf 97699973577778999877752887-632545014786202678699986999715066651989999999--999999
Q ss_pred HHHHCCEEECCCCCCHHHHHH------------HCCCCCCCCCCCCCCCCCCCH---------HHHHHHHHHHHHHHHHH
Q ss_conf 503011020135898566343------------128985322223334465420---------00001333323235899
Q gi|254780809|r 296 VENADLILLLKEINSKKEISF------------PKNIDFIFIGTKSDLYSTYTE---------EYDHLISSFTGEGLEEL 354 (440)
Q Consensus 296 i~~aDlil~v~D~~~~~~~~~------------~~~~~~i~V~NK~Dl~~~~~~---------~~~~~ISaktg~Gi~~L 354 (440)
+..||++|+|+|++++..... ..++|.|.|+||+|+...... ...++|||++|+|++.|
T Consensus 274 v~~ADlLLhVvD~S~p~~~~q~~~v~~vL~elg~~~~p~i~V~NKiD~~~~~~~~~~~~~~~~p~~V~iSA~tg~Gi~~L 353 (426)
T PRK11058 274 TRQATLLLHVIDAADVRVQENIEAVNTVLEEIDAHEIPTLLVMNKIDMLDDFEPRIDRDEENKPIRVWLSAQTGAGIPLL 353 (426)
T ss_pred HHCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCHHHHHHHHHCCCCCEEEEECCCCCCHHHH
T ss_conf 96398899998499937999999999999975999997799997702389644556665339987799978999899999
Q ss_pred HHHHHHHHHHHCCCCCCCEEHH
Q ss_conf 9999999632203588632014
Q gi|254780809|r 355 INKIKSILSNKFKKLPFSIPSH 376 (440)
Q Consensus 355 ~~~I~~~l~~~~~~~~~~i~~~ 376 (440)
.++|.+.+.......+..++..
T Consensus 354 ~~~I~~~L~~~~~~~~l~iP~~ 375 (426)
T PRK11058 354 FQALTERLSGEVAQHTLRLPPQ 375 (426)
T ss_pred HHHHHHHCCCCCEEEEEEECHH
T ss_conf 9999987033768999997865
No 34
>TIGR03598 GTPase_YsxC ribosome biogenesis GTP-binding protein YsxC/EngB. Members of this protein family are a GTPase associated with ribosome biogenesis, typified by YsxC from Bacillus subutilis. The family is widely but not universally distributed among bacteria. Members commonly are called EngB based on homology to EngA, one of several other GTPases of ribosome biogenesis. Cutoffs as set find essentially all bacterial members, but also identify large numbers of eukaryotic (probably organellar) sequences. This protein is found in about 80 percent of bacterial genomes.
Probab=99.93 E-value=4.3e-26 Score=200.89 Aligned_cols=133 Identities=27% Similarity=0.334 Sum_probs=96.3
Q ss_pred HHCCCEEEECCCCCCHHHHHHHHHCCHH-CCCCCCCCCCEEECCCCCCCCCEEEEEEECCHHC---CCCHHHHH--HHHH
Q ss_conf 2023024311466318889999855200-0234546872110001245683589995081000---24103566--6678
Q gi|254780809|r 217 RNGYKIVILGHSNAGKSSLFNALAKKDV-AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR---ETDDIVEK--EGIK 290 (440)
Q Consensus 217 ~~g~~v~i~G~pN~GKSSL~N~L~~~~~-aIVs~~~GTTRD~i~~~~~i~g~~~~l~DTaGir---~t~d~IE~--~GI~ 290 (440)
.++++|||+|+||||||||||+|+|+++ |+||+.||||||+... . .|..+.|+||||+. .+....++ ..++
T Consensus 16 ~~~p~IaivGrpNvGKSTL~N~L~g~k~~a~vs~~pGtTr~i~~~--~-~~~~~~lvDtpGyG~~~~~~~~~~~~~~~~~ 92 (179)
T TIGR03598 16 DDGPEIAFAGRSNVGKSSLINALTNRKKLARTSKTPGRTQLINFF--E-VNDGFRLVDLPGYGYAKVSKEEKEKWQKLIE 92 (179)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCCEEEECCCCCEEEECCEE--E-ECCCEEEEECCCHHHCCCCHHHHHHHHHHHH
T ss_conf 889789998699988899999986898558970899736602320--1-0473699977760211278888999999999
Q ss_pred HHHHHHHHHCCEEECCCCCCH---HHH-----HHHCCCCCCCCCCCCCCCCCCCH-----------------HHHHHHHH
Q ss_conf 889985030110201358985---663-----43128985322223334465420-----------------00001333
Q gi|254780809|r 291 RTFLEVENADLILLLKEINSK---KEI-----SFPKNIDFIFIGTKSDLYSTYTE-----------------EYDHLISS 345 (440)
Q Consensus 291 ra~~~i~~aDlil~v~D~~~~---~~~-----~~~~~~~~i~V~NK~Dl~~~~~~-----------------~~~~~ISa 345 (440)
.+....+..+.+++|+|+... .+. ....++|+++|+||+|+.++... ...+.|||
T Consensus 93 ~~~~~~~~l~~villiDa~~gl~~~D~~i~~~l~~~~kp~iivlNK~Dll~~~~~~~~~~~i~~~l~~~~~~~~v~~ISA 172 (179)
T TIGR03598 93 EYLRGRENLKGVVLLMDIRHPLKELDLEMLEWLDERGIPVLIVLTKADKLKKSERNKQLKKIKKALKKDADDPSVQLFSS 172 (179)
T ss_pred HHHHHHHHHHCEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEC
T ss_conf 99999886430289874377998999999999997599889999781306989999999999999733668894899979
Q ss_pred HHHHHHH
Q ss_conf 3232358
Q gi|254780809|r 346 FTGEGLE 352 (440)
Q Consensus 346 ktg~Gi~ 352 (440)
++|.|+|
T Consensus 173 ~~g~GID 179 (179)
T TIGR03598 173 LKKTGIE 179 (179)
T ss_pred CCCCCCC
T ss_conf 9983879
No 35
>PRK04213 GTP-binding protein; Provisional
Probab=99.92 E-value=2.3e-25 Score=195.84 Aligned_cols=140 Identities=25% Similarity=0.235 Sum_probs=100.4
Q ss_pred CCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCCEEECCCCCCCCCEEEEEEECCHHCCC----CH---HHHHHHHHHH
Q ss_conf 3024311466318889999855200023454687211000124568358999508100024----10---3566667888
Q gi|254780809|r 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET----DD---IVEKEGIKRT 292 (440)
Q Consensus 220 ~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTTRD~i~~~~~i~g~~~~l~DTaGir~t----~d---~IE~~GI~ra 292 (440)
+.|||+|+||||||||||+|+|++.+ ||+.||||||.+.. .++ .+.|+||||+... .. .+...-.+-.
T Consensus 2 P~VaivGRpNVGKSTL~N~L~g~k~~-vs~~pg~Tr~~~~~--~~~--~~~~vDtPG~g~~~~~~~~~~~~~~~~~~~~~ 76 (195)
T PRK04213 2 PEIIFVGRSNVGKSTLIRALTGKKVR-VGKRPGVTLKPNEY--DWG--DFILVDLPGFGFMSGVPKKVQERIKDEIVHYI 76 (195)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCC-CCCCCCEEEEEEEE--ECC--CEEEEECCCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 87999769998899999999689851-34899648734588--508--89999999962224588889999999999999
Q ss_pred HHHHHHHCCEEECCCCCCH--------------HHHH-----HHCCCCCCCCCCCCCCCCCCCH----------------
Q ss_conf 9985030110201358985--------------6634-----3128985322223334465420----------------
Q gi|254780809|r 293 FLEVENADLILLLKEINSK--------------KEIS-----FPKNIDFIFIGTKSDLYSTYTE---------------- 337 (440)
Q Consensus 293 ~~~i~~aDlil~v~D~~~~--------------~~~~-----~~~~~~~i~V~NK~Dl~~~~~~---------------- 337 (440)
...++.+|++++|+|+... .+.. ...++|+++|+||+|+.++...
T Consensus 77 ~~~~~~~~~~~~vvD~~~~~~~~dr~~~~~~~~~D~~i~~~l~~~~~p~ilv~NKiD~i~~~~~~l~~i~e~~~~~~~~~ 156 (195)
T PRK04213 77 EDNADRIAAAVLVVDGKSFPEIIERWESRGEIPIDVEMFDFLRELGINPIVAVNKMDKIKNSEEVLDEIAERLGLYPPWR 156 (195)
T ss_pred HHHHHHCCEEEEEEECCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEECHHHCCCHHHHHHHHHHHHHCCCCHH
T ss_conf 99885178999999578654421123445677778999999987499879999873305877888999999982576156
Q ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf ---0000133332323589999999996322
Q gi|254780809|r 338 ---EYDHLISSFTGEGLEELINKIKSILSNK 365 (440)
Q Consensus 338 ---~~~~~ISaktg~Gi~~L~~~I~~~l~~~ 365 (440)
...+.+||+.+ |+++|++.|.+.+...
T Consensus 157 ~~~~~iv~iSakk~-Gid~L~~~I~~~L~E~ 186 (195)
T PRK04213 157 QWLDIIAPISAKKG-GIEALKGLINKRLREF 186 (195)
T ss_pred HCCCEEEEEECCCC-CHHHHHHHHHHHCHHH
T ss_conf 56987999845779-9999999999967553
No 36
>COG2262 HflX GTPases [General function prediction only]
Probab=99.91 E-value=3e-24 Score=188.04 Aligned_cols=186 Identities=31% Similarity=0.392 Sum_probs=148.3
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH--HC-CCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCCEEECCCCC
Q ss_conf 33258888640100011212333223455432--02-3024311466318889999855200023454687211000124
Q gi|254780809|r 186 NFSSKEVLNDILFLKNDISSHISQGKLGEIIR--NG-YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL 262 (440)
Q Consensus 186 ~~~~~~~~~~i~~i~~~l~~ll~~~~~~~~l~--~g-~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTTRD~i~~~~ 262 (440)
+.+...+.+++..++++++++.+.....+.-| +| +.|+|+|++|||||||||+|++.+.. |-|.-.+|-|.-...+
T Consensus 156 E~drR~ir~rI~~i~~eLe~v~~~R~~~R~~R~~~~~p~vaLvGYTNAGKSTL~N~LT~~~~~-~~d~LFATLdpttR~~ 234 (411)
T COG2262 156 ETDRRRIRRRIAKLKRELENVEKAREPRRKKRSRSGIPLVALVGYTNAGKSTLFNALTGADVY-VADQLFATLDPTTRRI 234 (411)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHCCCEE-CCCCCCCCCCCCEEEE
T ss_conf 888999999999999999999987888765331169975898732344499999887245713-0466642105740489
Q ss_pred CCC-CEEEEEEECCHH-CC-CCHHHHHHHHHHHHHHHHHHCCEEECCCCCCHHHHHH------------HCCCCCCCCCC
Q ss_conf 568-358999508100-02-4103566667888998503011020135898566343------------12898532222
Q gi|254780809|r 263 DLE-GYLVKISDTAGI-RE-TDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISF------------PKNIDFIFIGT 327 (440)
Q Consensus 263 ~i~-g~~~~l~DTaGi-r~-t~d~IE~~GI~ra~~~i~~aDlil~v~D~~~~~~~~~------------~~~~~~i~V~N 327 (440)
.+. |.++.|.||.|+ |+ +...|+.. +.+++++.+||++|+|+|++++..... ...+|+|.|+|
T Consensus 235 ~l~~g~~vlLtDTVGFI~~LP~~LV~AF--ksTLEE~~~aDlllhVVDaSdp~~~~~~~~v~~vL~el~~~~~p~i~v~N 312 (411)
T COG2262 235 ELGDGRKVLLTDTVGFIRDLPHPLVEAF--KSTLEEVKEADLLLHVVDASDPEILEKLEAVEDVLAEIGADEIPIILVLN 312 (411)
T ss_pred EECCCCEEEEECCCCCCCCCCHHHHHHH--HHHHHHHHCCCEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEE
T ss_conf 8079964998657567155986799999--99898762277799974068851899999999999974889997899976
Q ss_pred CCCCCCCCC-------H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEE
Q ss_conf 333446542-------0-0000133332323589999999996322035886320
Q gi|254780809|r 328 KSDLYSTYT-------E-EYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374 (440)
Q Consensus 328 K~Dl~~~~~-------~-~~~~~ISaktg~Gi~~L~~~I~~~l~~~~~~~~~~i~ 374 (440)
|+|+..... . ...+.|||++|.|++.|++.|.+.+..........++
T Consensus 313 KiD~~~~~~~~~~~~~~~~~~v~iSA~~~~gl~~L~~~i~~~l~~~~~~~~l~lp 367 (411)
T COG2262 313 KIDLLEDEEILAELERGSPNPVFISAKTGEGLDLLRERIIELLSGLRTEVTLELP 367 (411)
T ss_pred CCCCCCCHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEECC
T ss_conf 4101573222345663489748998066759899999999986312433489747
No 37
>TIGR00437 feoB ferrous iron transport protein B; InterPro: IPR003373 Escherichia coli has an iron(II) transport system (feo) which may make an important contribution to the iron supply of the cell under anaerobic conditions. FeoB has been identified as part of this transport system and may play a role in the transport of ferrous iron. FeoB is a large 700-800 amino acid integral membrane protein. The N terminus contains a P-loop motif suggesting that iron transport may be ATP dependent .; GO: 0005525 GTP binding, 0015093 ferrous iron transmembrane transporter activity, 0015684 ferrous iron transport, 0009276 1-2nm peptidoglycan-based cell wall, 0016021 integral to membrane.
Probab=99.87 E-value=1.5e-22 Score=176.26 Aligned_cols=138 Identities=26% Similarity=0.338 Sum_probs=111.1
Q ss_pred CCCCCCHHHHHHHHHCCHHCCCCCCCCCCEEECCCCCCCCCEEEEEEECCHHCCCCHHH-HHHHHHHHHHHHHHHCCEEE
Q ss_conf 14663188899998552000234546872110001245683589995081000241035-66667888998503011020
Q gi|254780809|r 226 GHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIV-EKEGIKRTFLEVENADLILL 304 (440)
Q Consensus 226 G~pN~GKSSL~N~L~~~~~aIVs~~~GTTRD~i~~~~~i~g~~~~l~DTaGir~t~d~I-E~~GI~ra~~~i~~aDlil~ 304 (440)
|.||||||||||+|+|.+. .|+|+||+|-|.-++.+.+.|..++++|+||+..=.+.= .-|=|.|.+..-+++|+|+.
T Consensus 1 GNPNVGKStlFN~LTG~~~-~vGNwPG~TVek~eg~l~~~g~~i~ivDLPG~YSL~~~S~~dE~v~~dyl~~e~~DLv~n 79 (733)
T TIGR00437 1 GNPNVGKSTLFNALTGANQ-KVGNWPGVTVEKKEGKLKFQGEDIEIVDLPGIYSLTTFSGLDEKVARDYLLNEKPDLVVN 79 (733)
T ss_pred CCCCCHHHHHHHHHHCCCE-EEEECCCCEEEEEEEEEEECCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCCCEEEE
T ss_conf 9998158999987415870-787358870787788975246278998448730058998742799989975389967999
Q ss_pred CCCCCCHH-----HHHHH-CCCCCCCCCCCCCCCCCCCHH------------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 13589856-----63431-289853222233344654200------------00013333232358999999999632
Q gi|254780809|r 305 LKEINSKK-----EISFP-KNIDFIFIGTKSDLYSTYTEE------------YDHLISSFTGEGLEELINKIKSILSN 364 (440)
Q Consensus 305 v~D~~~~~-----~~~~~-~~~~~i~V~NK~Dl~~~~~~~------------~~~~ISaktg~Gi~~L~~~I~~~l~~ 364 (440)
|+|+++-+ .++.. -+.|.|+++|+.|..++..-. +.+.+||..|.|+++|+++|.+...+
T Consensus 80 VVDA~nLERnL~LTLQL~E~G~p~i~~LN~~DeA~k~GI~Id~~~Lee~LGvPVv~~~A~~g~G~~~L~~~i~~v~~~ 157 (733)
T TIGR00437 80 VVDASNLERNLYLTLQLLELGIPMILALNLVDEAEKKGIRIDEEKLEERLGVPVVPTSATEGRGIEELKDAIREVADK 157 (733)
T ss_pred EECHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCEECHHHHHHHCCCCEEEEEEEECCCHHHHHHHHHHHHHC
T ss_conf 725667778999999999716258568726789977296312577754338652565321057789999999998610
No 38
>PRK09554 feoB ferrous iron transport protein B; Reviewed
Probab=99.87 E-value=2.8e-21 Score=167.41 Aligned_cols=142 Identities=20% Similarity=0.237 Sum_probs=110.2
Q ss_pred HCCCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCCEEECCCCCCCCCEEEEEEECCHHCCC----CH-HH-HHHHHHH
Q ss_conf 023024311466318889999855200023454687211000124568358999508100024----10-35-6666788
Q gi|254780809|r 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET----DD-IV-EKEGIKR 291 (440)
Q Consensus 218 ~g~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTTRD~i~~~~~i~g~~~~l~DTaGir~t----~d-~I-E~~GI~r 291 (440)
+.++||++|.||+|||||||+|+|.+ .-|+|+||+|-|.-++.+.++|..+.++|+||+..- ++ .+ |+ |.|
T Consensus 2 k~i~IALvGNPN~GKSTLFN~LTG~~-q~VgNwPGvTVEkk~G~~~~~~~~~~ivDLPG~YSL~~~S~e~s~dE~--Var 78 (772)
T PRK09554 2 KKLTIGLIGNPNSGKTTLFNQLTGAR-QRVGNWAGVTVERKEGQFSTTDHQVTLVDLPGTYSLTTISSQTSLDEQ--IAC 78 (772)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCC-CEEECCCCCEEEEEEEEEEECCCEEEEEECCCCCCCCCCCCCCCCHHH--HHH
T ss_conf 73569988899878999999986899-835789976474238999968946999979977869999977773089--999
Q ss_pred HHHHHHHHCCEEECCCCCCHHHH-----H-HHCCCCCCCCCCCCCCCCCCCHH------------HHHHHHHHHHHHHHH
Q ss_conf 89985030110201358985663-----4-31289853222233344654200------------000133332323589
Q gi|254780809|r 292 TFLEVENADLILLLKEINSKKEI-----S-FPKNIDFIFIGTKSDLYSTYTEE------------YDHLISSFTGEGLEE 353 (440)
Q Consensus 292 a~~~i~~aDlil~v~D~~~~~~~-----~-~~~~~~~i~V~NK~Dl~~~~~~~------------~~~~ISaktg~Gi~~ 353 (440)
-.-.-++.|+++.|+|+++-+-- + ..-+.|+++++|++|...+.... +.+.+||.+|+|+++
T Consensus 79 ~~ll~~~pDvvvnVvDAtnLeRnLyLt~QllElg~PvVvaLNM~D~A~~~Gi~ID~~~Ls~~LGvPVV~~~A~~g~Gi~e 158 (772)
T PRK09554 79 HYILSGDADLLINVVDASNLERNLYLTLQLLELGIPCIVALNMLDIAEKQNIRIDIDALSARLGCPVIPLVSTRGRGIEA 158 (772)
T ss_pred HHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHCCCCEEEEEECHHHHHHCCCEECHHHHHHHHCCCEEEEEECCCCCHHH
T ss_conf 98613999899998016875442899999997499989998779989887793289999998589989998278879999
Q ss_pred HHHHHHHHH
Q ss_conf 999999996
Q gi|254780809|r 354 LINKIKSIL 362 (440)
Q Consensus 354 L~~~I~~~l 362 (440)
|+++|.+.-
T Consensus 159 L~~ai~~~~ 167 (772)
T PRK09554 159 LKLAIDRYK 167 (772)
T ss_pred HHHHHHHHH
T ss_conf 999999752
No 39
>pfam10662 PduV-EutP Ethanolamine utilisation - propanediol utilisation. Members of this family function in ethanolamine and propanediol degradation pathways, however the exact roles of these proteins is poorly understood.
Probab=99.87 E-value=1.4e-22 Score=176.50 Aligned_cols=123 Identities=24% Similarity=0.258 Sum_probs=92.2
Q ss_pred CEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCCEEECCCCCCCCCEEEEEEECCHHCCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf 02431146631888999985520002345468721100012456835899950810002410356666788899850301
Q gi|254780809|r 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 (440)
Q Consensus 221 ~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTTRD~i~~~~~i~g~~~~l~DTaGir~t~d~IE~~GI~ra~~~i~~aD 300 (440)
||+|+|+||||||||+|+|+|+ +|++..+.|||= ...++||||++..+... .+.....+.+||
T Consensus 3 kVaivGrpNvGKSTLlN~L~g~--~i~~~K~qtt~~-----------~~~~IDTPG~~~~~~~~----~~~~~~~~~daD 65 (143)
T pfam10662 3 KIMLIGRSGCGKTTLTQALNGE--ELKYKKTQAIEF-----------SDNMIDTPGEYLENRRF----YSALIVTAADAD 65 (143)
T ss_pred EEEEECCCCCCHHHHHHHHCCC--CEEECCCEEEEE-----------CCCEEECCCCCCCCHHH----HHHHHHHHHHCC
T ss_conf 5999899999999999997599--445178707985-----------57489998766562899----999999996499
Q ss_pred CEEECCCCCCHHH-----HHHHCCCCCCCCCCCCCCCCCCCH-------------HHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 1020135898566-----343128985322223334465420-------------00001333323235899999999
Q gi|254780809|r 301 LILLLKEINSKKE-----ISFPKNIDFIFIGTKSDLYSTYTE-------------EYDHLISSFTGEGLEELINKIKS 360 (440)
Q Consensus 301 lil~v~D~~~~~~-----~~~~~~~~~i~V~NK~Dl~~~~~~-------------~~~~~ISaktg~Gi~~L~~~I~~ 360 (440)
++++|+|++++.. +....++|+|+|+||+|+.++... ...+.|||.+|+|+++|++.|.+
T Consensus 66 vil~vvDa~~~~~~~~~~~~~~~~kpvIlViNKiD~~~~~~~l~~~~~~~~~~~~~~i~~iSA~~g~Gid~L~~~l~e 143 (143)
T pfam10662 66 VIALVQDATEPWSVFPPGFASMFNKPVIGIITKIDLAKDEANIEMVEEWLNNAGAEKIFEVSAVTNEGIDELFAYLEE 143 (143)
T ss_pred EEEEEEECCCCCCCCCHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHC
T ss_conf 999998778866756877897547988999980224575667899999997589987999889899899999999749
No 40
>COG1084 Predicted GTPase [General function prediction only]
Probab=99.85 E-value=1.6e-20 Score=162.25 Aligned_cols=201 Identities=22% Similarity=0.256 Sum_probs=134.3
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHH
Q ss_conf 67777778898850036889998875314310245665677699888654443113544311233258888640100011
Q gi|254780809|r 123 IDLLEAESLADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKND 202 (440)
Q Consensus 123 idL~qaEai~~LI~A~t~~~~~~a~~~l~G~ls~~i~~lr~~L~~~~a~iEa~IDF~dEedi~~~~~~~~~~~i~~i~~~ 202 (440)
+.-..-|.+..|=.|++..+.....++..|.+.+.++.+.+.|.-+...- ...+++-.+.
T Consensus 106 i~~l~~eYi~~lk~a~~~~~~~~lrR~a~GR~aSiik~i~~~L~fL~~~r------------------~~l~~LP~Id-- 165 (346)
T COG1084 106 IEKLAREYIRLLKAAKDPKEANQLRRQAFGRVASIIKKIDDDLEFLRKAR------------------DHLKKLPAID-- 165 (346)
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHCCCCCC--
T ss_conf 99999999998742798668999999998789999998627899999999------------------9985088779--
Q ss_pred HHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCCEEECCCCCCCCCEEEEEEECCHHCC---
Q ss_conf 21233322345543202302431146631888999985520002345468721100012456835899950810002---
Q gi|254780809|r 203 ISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE--- 279 (440)
Q Consensus 203 l~~ll~~~~~~~~l~~g~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTTRD~i~~~~~i~g~~~~l~DTaGir~--- 279 (440)
-+.++|+++|+||||||||++++++.+.- |.++|.||+-+.-+++..++.+++++|||||-+
T Consensus 166 --------------p~~pTivVaG~PNVGKSSlv~~lT~AkpE-vA~YPFTTK~i~vGhfe~~~~R~QvIDTPGlLDRPl 230 (346)
T COG1084 166 --------------PDLPTIVVAGYPNVGKSSLVRKLTTAKPE-VAPYPFTTKGIHVGHFERGYLRIQVIDTPGLLDRPL 230 (346)
T ss_pred --------------CCCCEEEEECCCCCCHHHHHHHHHCCCCC-CCCCCCCCCCEEEEEEECCCCEEEEECCCCCCCCCH
T ss_conf --------------99973898569987589999887548976-678885336546765504870589842886457885
Q ss_pred -CCHHHHHHHHHHHHHHHHHHCCEEECCCCCCHH------HHH------HHCCCCCCCCCCCCCCCCCCCHHH-------
Q ss_conf -410356666788899850301102013589856------634------312898532222333446542000-------
Q gi|254780809|r 280 -TDDIVEKEGIKRTFLEVENADLILLLKEINSKK------EIS------FPKNIDFIFIGTKSDLYSTYTEEY------- 339 (440)
Q Consensus 280 -t~d~IE~~GI~ra~~~i~~aDlil~v~D~~~~~------~~~------~~~~~~~i~V~NK~Dl~~~~~~~~------- 339 (440)
.-|.||+..|- |+..+ +++|||++|++... +.. ..-+.|+++|+||+|+......+.
T Consensus 231 ~ErN~IE~qAi~-AL~hl--~~~IlF~~D~Se~cgy~lE~Q~~L~~eIk~~f~~p~v~V~nK~D~~~~e~~~~~~~~~~~ 307 (346)
T COG1084 231 EERNEIERQAIL-ALRHL--AGVILFLFDPSETCGYSLEEQISLLEEIKELFKAPIVVVINKIDIADEEKLEEIEASVLE 307 (346)
T ss_pred HHHCHHHHHHHH-HHHHH--CCEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHH
T ss_conf 773689999999-99974--285899976850028999999999999998538876999741012466678999999876
Q ss_pred -----HHHHHHHHHHHHHHHHHHHHHH
Q ss_conf -----0013333232358999999999
Q gi|254780809|r 340 -----DHLISSFTGEGLEELINKIKSI 361 (440)
Q Consensus 340 -----~~~ISaktg~Gi~~L~~~I~~~ 361 (440)
...+|+..+.|++.+.+.+.+.
T Consensus 308 ~~~~~~~~~~~~~~~~~d~~~~~v~~~ 334 (346)
T COG1084 308 EGGEEPLKISATKGCGLDKLREEVRKT 334 (346)
T ss_pred HCCCCCCCEEEEEHHHHHHHHHHHHHH
T ss_conf 326554313543000178899999887
No 41
>cd04171 SelB SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec, and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and eukaryo
Probab=99.84 E-value=6.3e-21 Score=165.02 Aligned_cols=132 Identities=27% Similarity=0.292 Sum_probs=99.8
Q ss_pred CEEEECCCCCCHHHHHHHHHCCHHCCCC--CCCCCCEEECCCCCCC-CCEEEEEEECCHHCCCCHHHHHHHHHHHHHHHH
Q ss_conf 0243114663188899998552000234--5468721100012456-835899950810002410356666788899850
Q gi|254780809|r 221 KIVILGHSNAGKSSLFNALAKKDVAIVT--DIPGTTRDVLTIDLDL-EGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297 (440)
Q Consensus 221 ~v~i~G~pN~GKSSL~N~L~~~~~aIVs--~~~GTTRD~i~~~~~i-~g~~~~l~DTaGir~t~d~IE~~GI~ra~~~i~ 297 (440)
-|+++|+||+|||||+|+|+|.+.+.++ ..+|+|+|.-...+.+ ++..+.|+||||.++ . +...+..+.
T Consensus 2 vVaivG~~n~GKSTL~n~L~g~~~d~~~~e~~~giTi~~~~~~~~~~~~~~i~~iDtPGh~~-------~-~~~~~~~~~ 73 (164)
T cd04171 2 IIGTAGHIDHGKTTLIKALTGIETDRLPEEKKRGITIDLGFAYLDLPSGKRLGFIDVPGHEK-------F-IKNMLAGAG 73 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCHHHHCCCEEEEEEEEEEECCCCCEEEEEECCCHHH-------H-HHHHHHHHH
T ss_conf 99999268872999999984964663333334863798546878648998999994878799-------9-999999874
Q ss_pred HHCCEEECCCCCCH---HHH---HH--HCCCC-CCCCCCCCCCCCCCCH------------------HHHHHHHHHHHHH
Q ss_conf 30110201358985---663---43--12898-5322223334465420------------------0000133332323
Q gi|254780809|r 298 NADLILLLKEINSK---KEI---SF--PKNID-FIFIGTKSDLYSTYTE------------------EYDHLISSFTGEG 350 (440)
Q Consensus 298 ~aDlil~v~D~~~~---~~~---~~--~~~~~-~i~V~NK~Dl~~~~~~------------------~~~~~ISaktg~G 350 (440)
.+|++++|+|+++. ... .. ..+.| .++|+||+|+.++... .+.+.|||++|+|
T Consensus 74 ~aD~~llVvda~~g~~~q~~e~~~~~~~~~i~~~ivvlNK~D~v~~~~~~~~~~~i~~~l~~~~~~~~pii~iSA~tG~G 153 (164)
T cd04171 74 GIDLVLLVVAADEGIMPQTREHLEILELLGIKRGLVVLTKADLVDEDWLELVEEEIRELLAGTFLADAPIFPVSAVTGEG 153 (164)
T ss_pred HCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCC
T ss_conf 26725899861778888899999999873887278734634257978999999999999974399998299946989829
Q ss_pred HHHHHHHHHH
Q ss_conf 5899999999
Q gi|254780809|r 351 LEELINKIKS 360 (440)
Q Consensus 351 i~~L~~~I~~ 360 (440)
+++|++.|.+
T Consensus 154 i~eL~~~I~e 163 (164)
T cd04171 154 IEELKEYLDE 163 (164)
T ss_pred HHHHHHHHHH
T ss_conf 9999999984
No 42
>COG0370 FeoB Fe2+ transport system protein B [Inorganic ion transport and metabolism]
Probab=99.84 E-value=3.4e-20 Score=159.97 Aligned_cols=144 Identities=26% Similarity=0.316 Sum_probs=111.2
Q ss_pred CCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCCEEECCCCCCCCCEEEEEEECCHHCCC--CHHHHHHHHHHHHHHHH
Q ss_conf 3024311466318889999855200023454687211000124568358999508100024--10356666788899850
Q gi|254780809|r 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET--DDIVEKEGIKRTFLEVE 297 (440)
Q Consensus 220 ~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTTRD~i~~~~~i~g~~~~l~DTaGir~t--~d~IE~~GI~ra~~~i~ 297 (440)
.+|+++|.||||||||||+|+|.+ .-|+|+||+|-+.-|+.+...|..++++|.||+..- ...=|+ |.|-.-.-.
T Consensus 4 ~~valvGNPNvGKTtlFN~LTG~~-q~VgNwpGvTVEkkeg~~~~~~~~i~ivDLPG~YSL~~~S~DE~--Var~~ll~~ 80 (653)
T COG0370 4 LTVALVGNPNVGKTTLFNALTGAN-QKVGNWPGVTVEKKEGKLKYKGHEIEIVDLPGTYSLTAYSEDEK--VARDFLLEG 80 (653)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCC-CEECCCCCCEEEEEEEEEEECCCEEEEEECCCCCCCCCCCCHHH--HHHHHHHCC
T ss_conf 438985699854899999985667-46547898069987889973585489986897565888992089--999998638
Q ss_pred HHCCEEECCCCCCHHH-----HHH-HCCCCCCCCCCCCCCCCCCCHH------------HHHHHHHHHHHHHHHHHHHHH
Q ss_conf 3011020135898566-----343-1289853222233344654200------------000133332323589999999
Q gi|254780809|r 298 NADLILLLKEINSKKE-----ISF-PKNIDFIFIGTKSDLYSTYTEE------------YDHLISSFTGEGLEELINKIK 359 (440)
Q Consensus 298 ~aDlil~v~D~~~~~~-----~~~-~~~~~~i~V~NK~Dl~~~~~~~------------~~~~ISaktg~Gi~~L~~~I~ 359 (440)
..|+++.|+|+++-.- .+. .-+.|.++++|++|..++.... +.+.+||++|+|+++|+++|.
T Consensus 81 ~~D~ivnVvDA~nLeRnLyltlQLlE~g~p~ilaLNm~D~A~~~Gi~Id~~~L~~~LGvPVv~tvA~~g~G~~~l~~~i~ 160 (653)
T COG0370 81 KPDLIVNVVDATNLERNLYLTLQLLELGIPMILALNMIDEAKKRGIRIDIEKLSKLLGVPVVPTVAKRGEGLEELKRAII 160 (653)
T ss_pred CCCEEEEEECCCHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHCCCCCCHHHHHHHHCCCEEEEEECCCCCHHHHHHHHH
T ss_conf 99889996023237777899999998599859996127568864971269999998689889987305889799999998
Q ss_pred HHHHHHC
Q ss_conf 9963220
Q gi|254780809|r 360 SILSNKF 366 (440)
Q Consensus 360 ~~l~~~~ 366 (440)
+......
T Consensus 161 ~~~~~~~ 167 (653)
T COG0370 161 ELAESKT 167 (653)
T ss_pred HHCCCCC
T ss_conf 7432556
No 43
>pfam00009 GTP_EFTU Elongation factor Tu GTP binding domain. This domain contains a P-loop motif, also found in several other families such as pfam00071, pfam00025 and pfam00063. Elongation factor Tu consists of three structural domains, this plus two C-terminal beta barrel domains.
Probab=99.83 E-value=8.4e-21 Score=164.15 Aligned_cols=136 Identities=23% Similarity=0.230 Sum_probs=100.9
Q ss_pred CCEEEECCCCCCHHHHHHHHHCCHHCCCCCCC----------------CCCEEECCCCCCCCCEEEEEEECCHHCCCCHH
Q ss_conf 30243114663188899998552000234546----------------87211000124568358999508100024103
Q gi|254780809|r 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIP----------------GTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283 (440)
Q Consensus 220 ~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~----------------GTTRD~i~~~~~i~g~~~~l~DTaGir~t~d~ 283 (440)
.+|+|+|+||+|||||+|+|++...+|.+... |.|.|.-...+.+++..+.|+||||.++-
T Consensus 4 rnVaivG~~n~GKSTL~n~Ll~~~~~i~~~~~~~~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~i~~iDtPGh~~f--- 80 (185)
T pfam00009 4 RNIGIIGHVDHGKTTLTDALLYVTGAIDKRGEVKQEGELDRLKEERERGITIKIAAVSFETKKRHINIIDTPGHVDF--- 80 (185)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHCCEEEEEEEEEEEECCCEEEEEECCCCCCH---
T ss_conf 78999938994499999999715487654643100333365588885782698769999608936899989987143---
Q ss_pred HHHHHHHHHHHHHHHHCCEEECCCCCCHHH--------HHHHCCCCCCCCCCCCCCCCCCCH------------------
Q ss_conf 566667888998503011020135898566--------343128985322223334465420------------------
Q gi|254780809|r 284 VEKEGIKRTFLEVENADLILLLKEINSKKE--------ISFPKNIDFIFIGTKSDLYSTYTE------------------ 337 (440)
Q Consensus 284 IE~~GI~ra~~~i~~aDlil~v~D~~~~~~--------~~~~~~~~~i~V~NK~Dl~~~~~~------------------ 337 (440)
+..+...+..||++++|+|+.+... .....++|.++++||+|+.+....
T Consensus 81 -----~~~~~~~l~~aD~~vlVvda~~G~~~qt~~~~~~~~~~~~p~iv~vNKiD~v~~~~~~~~~~e~~~~ll~~~~~~ 155 (185)
T pfam00009 81 -----TKEMIRGAAQADGAILVVDAVEGVMPQTREHLLLAKQLGVPIIVFINKMDRVDDAELDEVVEEISRELLEKYGFG 155 (185)
T ss_pred -----HHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCC
T ss_conf -----999999986465642999867685323099999999828987999977327776769999999999988873248
Q ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf ---00001333323235899999999963
Q gi|254780809|r 338 ---EYDHLISSFTGEGLEELINKIKSILS 363 (440)
Q Consensus 338 ---~~~~~ISaktg~Gi~~L~~~I~~~l~ 363 (440)
...+.|||++|+|+++|++.|.+.++
T Consensus 156 ~~~~pivpiSA~~G~gv~~Ll~~i~~~lP 184 (185)
T pfam00009 156 GETIPVIPGSALTGEGIDTLLEALDLYLP 184 (185)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHCC
T ss_conf 99886999678999798999999997785
No 44
>PRK12299 obgE GTPase ObgE; Reviewed
Probab=99.82 E-value=2.6e-20 Score=160.75 Aligned_cols=144 Identities=26% Similarity=0.290 Sum_probs=112.0
Q ss_pred CCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCCEEECCCCCCC-CCEEEEEEECCHHCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 302431146631888999985520002345468721100012456-8358999508100024103566667888998503
Q gi|254780809|r 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298 (440)
Q Consensus 220 ~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTTRD~i~~~~~i-~g~~~~l~DTaGir~t~d~IE~~GI~ra~~~i~~ 298 (440)
..|.|+|.||||||||+|+|++.+- -|.++|.||....-..+.+ ++..+.+.|+|||-+-..+=-.+|. +-+++++.
T Consensus 159 ADVgLVG~PNaGKSTLl~~is~A~p-kIa~YpFTTl~P~lGvv~~~d~~~~~iaDiPGlIegA~~g~GLG~-~FLrHieR 236 (334)
T PRK12299 159 ADVGLVGLPNAGKSTLISSVSAAKP-KIADYPFTTLHPNLGVVRVDDYKSFVIADIPGLIEGASEGAGLGH-RFLKHIER 236 (334)
T ss_pred CCCEEEECCCCCHHHHHHHHHCCCC-CCCCCCCEECCCEEEEEEECCCCEEEEEECCCCCCCCCCCCCCHH-HHHHHHHH
T ss_conf 0301463698746699998764764-335787300387547999468867899866743355234777478-99876653
Q ss_pred HCCEEECCCCCCHHHHH--------------HHCCCCCCCCCCCCCCCCCCCH------------HHHHHHHHHHHHHHH
Q ss_conf 01102013589856634--------------3128985322223334465420------------000013333232358
Q gi|254780809|r 299 ADLILLLKEINSKKEIS--------------FPKNIDFIFIGTKSDLYSTYTE------------EYDHLISSFTGEGLE 352 (440)
Q Consensus 299 aDlil~v~D~~~~~~~~--------------~~~~~~~i~V~NK~Dl~~~~~~------------~~~~~ISaktg~Gi~ 352 (440)
+.++++|+|.+..+... .+..+|.++|+||+|+...... ...+.|||.+++|++
T Consensus 237 ~~~L~~viD~s~~d~~~~~~~l~~EL~~y~~~L~~Kp~ivvlNK~Dl~~~~~~~~~~~~~~~~~~~~v~~ISA~~g~Gl~ 316 (334)
T PRK12299 237 TRLLLHLVDASSEDPVEDYKTIRNELEKYSPELADKPRILVLNKIDLLDEEERKEKIKELIKALGGPVFLISAVTGEGLD 316 (334)
T ss_pred CCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCHH
T ss_conf 43699999799889899999999999985065536987999988106885678999999998709968999787784999
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 9999999996322
Q gi|254780809|r 353 ELINKIKSILSNK 365 (440)
Q Consensus 353 ~L~~~I~~~l~~~ 365 (440)
+|++.|.+.+...
T Consensus 317 eL~~~i~~~L~~~ 329 (334)
T PRK12299 317 ELLRALWEFLKEQ 329 (334)
T ss_pred HHHHHHHHHHHHH
T ss_conf 9999999999977
No 45
>KOG1423 consensus
Probab=99.80 E-value=1.7e-19 Score=155.05 Aligned_cols=156 Identities=21% Similarity=0.229 Sum_probs=117.2
Q ss_pred CCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCCEEECCCCCCCCCEEEEEEECCHHCCCC----HHHHHHHHHHHHHH
Q ss_conf 30243114663188899998552000234546872110001245683589995081000241----03566667888998
Q gi|254780809|r 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD----DIVEKEGIKRTFLE 295 (440)
Q Consensus 220 ~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTTRD~i~~~~~i~g~~~~l~DTaGir~t~----d~IE~~GI~ra~~~ 295 (440)
..|+++|.||||||||.|.+.|.+.+.||+.+.|||--+.+.+.-+...+.|+||||+-.+. +..+.--.+-.+.+
T Consensus 73 L~vavIG~PNvGKStLtN~mig~kv~~vS~K~~TTr~~ilgi~ts~eTQlvf~DTPGlvs~~~~r~~~l~~s~lq~~~~a 152 (379)
T KOG1423 73 LYVAVIGAPNVGKSTLTNQMIGQKVSAVSRKVHTTRHRILGIITSGETQLVFYDTPGLVSKKMHRRHHLMMSVLQNPRDA 152 (379)
T ss_pred EEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCEEEEEEEEEECCCEEEEEECCCCCCCCCHHHHHHHHHHHHHCHHHH
T ss_conf 89999708976545544576487212011566530201357871596589996487645334135678888765378988
Q ss_pred HHHHCCEEECCCCCCHH---------HHHHHCCCCCCCCCCCCCCCCCCCH-----------------------------
Q ss_conf 50301102013589856---------6343128985322223334465420-----------------------------
Q gi|254780809|r 296 VENADLILLLKEINSKK---------EISFPKNIDFIFIGTKSDLYSTYTE----------------------------- 337 (440)
Q Consensus 296 i~~aDlil~v~D~~~~~---------~~~~~~~~~~i~V~NK~Dl~~~~~~----------------------------- 337 (440)
++.||+|++|+|+++.. ......+.|.++|.||.|..+....
T Consensus 153 ~q~AD~vvVv~Das~tr~~l~p~vl~~l~~ys~ips~lvmnkid~~k~k~~Ll~l~~~Lt~g~l~~~kl~v~~~f~~~p~ 232 (379)
T KOG1423 153 AQNADCVVVVVDASATRTPLHPRVLHMLEEYSKIPSILVMNKIDKLKQKRLLLNLKDLLTNGELAKLKLEVQEKFTDVPS 232 (379)
T ss_pred HHHCCEEEEEEECCCCCCCCCHHHHHHHHHHHCCCCEEECCCHHCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCC
T ss_conf 86388799998556776756807877789986187203304000221466776667760555100345658887355974
Q ss_pred -------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEH
Q ss_conf -------------00001333323235899999999963220358863201
Q gi|254780809|r 338 -------------EYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPS 375 (440)
Q Consensus 338 -------------~~~~~ISaktg~Gi~~L~~~I~~~l~~~~~~~~~~i~~ 375 (440)
+..+.+||++|+|+++|++.|........-..+..+.+
T Consensus 233 ~~~~~~~~gwshfe~vF~vSaL~G~GikdlkqyLmsqa~~gpW~y~a~i~T 283 (379)
T KOG1423 233 DEKWRTICGWSHFERVFMVSALYGEGIKDLKQYLMSQAPPGPWKYPADIVT 283 (379)
T ss_pred CCCCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCC
T ss_conf 335643247645314899840466678999999972379999877766606
No 46
>cd01887 IF2_eIF5B IF2/eIF5B (initiation factors 2/ eukaryotic initiation factor 5B) subfamily. IF2/eIF5B contribute to ribosomal subunit joining and function as GTPases that are maximally activated by the presence of both ribosomal subunits. As seen in other GTPases, IF2/IF5B undergoes conformational changes between its GTP- and GDP-bound states. Eukaryotic IF2/eIF5Bs possess three characteristic segments, including a divergent N-terminal region followed by conserved central and C-terminal segments. This core region is conserved among all known eukaryotic and archaeal IF2/eIF5Bs and eubacterial IF2s.
Probab=99.80 E-value=1.4e-19 Score=155.73 Aligned_cols=135 Identities=23% Similarity=0.300 Sum_probs=95.7
Q ss_pred CCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCCEEECCCC---CCCCCEEEEEEECCHHCCCCHHHHHHHHHHHHHHH
Q ss_conf 302431146631888999985520002345468721100012---45683589995081000241035666678889985
Q gi|254780809|r 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTID---LDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296 (440)
Q Consensus 220 ~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTTRD~i~~~---~~i~g~~~~l~DTaGir~t~d~IE~~GI~ra~~~i 296 (440)
+.|+|+|+||+|||||+|+|.+.+.+ +.+.+|+|+++-... ...++..+.|+||||...-.. .+ ...+
T Consensus 1 P~VaivG~~n~GKSTL~n~L~~~~~~-~~~~~g~T~~i~~~~~~~~~~~~~~i~~iDTPGh~~f~~-------~~-~~~~ 71 (168)
T cd01887 1 PVVTVMGHVDHGKTTLLDKIRKTNVA-AGEAGGITQHIGAFEVPAEVLKIPGITFIDTPGHEAFTN-------MR-ARGA 71 (168)
T ss_pred CEEEEEECCCCCHHHHHHHHHCCCCC-EEECCCCEEEECEEEEEEEECCCCEEEEEECCCCHHHHH-------HH-HHHH
T ss_conf 98999948998598999998586750-451698168715399998825887189998998167799-------99-9998
Q ss_pred HHHCCEEECCCCCCH---HHH-----HHHCCCCCCCCCCCCCCCCCCCH--------------------HHHHHHHHHHH
Q ss_conf 030110201358985---663-----43128985322223334465420--------------------00001333323
Q gi|254780809|r 297 ENADLILLLKEINSK---KEI-----SFPKNIDFIFIGTKSDLYSTYTE--------------------EYDHLISSFTG 348 (440)
Q Consensus 297 ~~aDlil~v~D~~~~---~~~-----~~~~~~~~i~V~NK~Dl~~~~~~--------------------~~~~~ISaktg 348 (440)
..||++++|+|+.+. ... ....++|+++|+||+|+.+.... ...+.+||++|
T Consensus 72 ~~aD~~ilvvda~~g~~~~~~~~~~~l~~~~~p~ivviNKiD~~~~~~~~v~~~l~~~~~~~~~~~~~~~~iIpvSA~tG 151 (168)
T cd01887 72 SLTDIAILVVAADDGVMPQTIEAIKLAKAANVPFIVALNKIDKPNANPERVKNELSELGLQGEDEWGGDVQIVPTSAKTG 151 (168)
T ss_pred HHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCHHHCCCCCEEEEEECCCC
T ss_conf 62688999986466754589999999987699789999893089879899999999975452455289875999989999
Q ss_pred HHHHHHHHHHHHHHH
Q ss_conf 235899999999963
Q gi|254780809|r 349 EGLEELINKIKSILS 363 (440)
Q Consensus 349 ~Gi~~L~~~I~~~l~ 363 (440)
+|+++|+++|....+
T Consensus 152 ~gi~~L~~~i~~~a~ 166 (168)
T cd01887 152 EGIDDLLEAILLLAE 166 (168)
T ss_pred CCHHHHHHHHHHHHH
T ss_conf 899999999999971
No 47
>cd00881 GTP_translation_factor GTP translation factor family. This family consists primarily of translation initiation, elongation, and release factors, which play specific roles in protein translation. In addition, the family includes Snu114p, a component of the U5 small nuclear riboprotein particle which is a component of the spliceosome and is involved in excision of introns, TetM, a tetracycline resistance gene that protects the ribosome from tetracycline binding, and the unusual subfamily CysN/ATPS, which has an unrelated function (ATP sulfurylase) acquired through lateral transfer of the EF1-alpha gene and development of a new function.
Probab=99.77 E-value=8e-19 Score=150.39 Aligned_cols=136 Identities=23% Similarity=0.195 Sum_probs=106.3
Q ss_pred CEEEECCCCCCHHHHHHHHHCCHHCCCCCCC---------------CCCEEECCCCCCCCCEEEEEEECCHHCCCCHHHH
Q ss_conf 0243114663188899998552000234546---------------8721100012456835899950810002410356
Q gi|254780809|r 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIP---------------GTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVE 285 (440)
Q Consensus 221 ~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~---------------GTTRD~i~~~~~i~g~~~~l~DTaGir~t~d~IE 285 (440)
.|+|+|.||+|||||+|+|++...++..+.. |.|+|.....+.+.+..+.|+||||-.+ -
T Consensus 1 Nv~iiGh~d~GKTTL~~~Ll~~~~~~~~~~~~~~~~~d~~~~E~~rgiTi~~~~~~~~~~~~~i~~iDTPGh~~---f-- 75 (189)
T cd00881 1 NVGIAGHVDHGKTTLTERLLYVTGDIERDGTVEETFLDVLKEERERGITIKSGVATFEWPDRRVNFIDTPGHED---F-- 75 (189)
T ss_pred CEEEECCCCCCHHHHHHHHHHHCCCCCCCCCEEEEEECCCHHHHHCCCEEEEEEEEEEECCEEEEEEECCCCHH---H--
T ss_conf 98999179989999999999764723568625888505777888638413222799998998999996998188---9--
Q ss_pred HHHHHHHHHHHHHHCCEEECCCCCCHHH--------HHHHCCCCCCCCCCCCCCCCCCCH--------------------
Q ss_conf 6667888998503011020135898566--------343128985322223334465420--------------------
Q gi|254780809|r 286 KEGIKRTFLEVENADLILLLKEINSKKE--------ISFPKNIDFIFIGTKSDLYSTYTE-------------------- 337 (440)
Q Consensus 286 ~~GI~ra~~~i~~aDlil~v~D~~~~~~--------~~~~~~~~~i~V~NK~Dl~~~~~~-------------------- 337 (440)
+......+..||..++|+|+.+... .....++|+++++||+|+......
T Consensus 76 ---~~~~~~~l~~aD~ailvVda~~G~~~qt~~~~~~~~~~~~p~iv~iNKiD~~~~~~~~~~~~ei~~~l~~~~~~~~~ 152 (189)
T cd00881 76 ---SSEVIRGLSVSDGAILVVDANEGVQPQTREHLRIAREGGLPIIVAINKIDRVGEEDLEEVLREIKELLGLIGFISTK 152 (189)
T ss_pred ---HHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHHCCHHHH
T ss_conf ---99999998646856999987989987899999999976998799998971877562999999999998753210232
Q ss_pred ---------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf ---------000013333232358999999999632
Q gi|254780809|r 338 ---------EYDHLISSFTGEGLEELINKIKSILSN 364 (440)
Q Consensus 338 ---------~~~~~ISaktg~Gi~~L~~~I~~~l~~ 364 (440)
...+.+||++|.|+++|++.|.+.++.
T Consensus 153 ~~~~~~~~~~piv~iSA~~G~gv~~Lld~i~~~lP~ 188 (189)
T cd00881 153 EEGTRNGLLVPIVPGSALTGIGVEELLEAIVEHLPP 188 (189)
T ss_pred HHCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHCCC
T ss_conf 110125887759998886786979999999976879
No 48
>PRK12298 obgE GTPase ObgE; Reviewed
Probab=99.75 E-value=3.5e-18 Score=145.99 Aligned_cols=145 Identities=23% Similarity=0.224 Sum_probs=110.4
Q ss_pred CCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCCEEECCCCCCCC-CEEEEEEECCHHCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 3024311466318889999855200023454687211000124568-358999508100024103566667888998503
Q gi|254780809|r 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298 (440)
Q Consensus 220 ~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTTRD~i~~~~~i~-g~~~~l~DTaGir~t~d~IE~~GI~ra~~~i~~ 298 (440)
.-|.|+|.||||||||+++++..+ .-|.++|.||-...-..+.++ +..|.+.|.|||-+-...=--+|++ -+++++.
T Consensus 160 ADVGLvG~PNAGKSTll~~iS~Ak-PKIAdYpFTTL~PnLGvV~~~~~~~fviADIPGLIeGAs~G~GLG~~-FLrHieR 237 (380)
T PRK12298 160 ADVGLLGLPNAGKSTFIRAVSAAK-PKVADYPFTTLVPNLGVVRVDDERSFVIADIPGLIEGAAEGAGLGIR-FLKHLER 237 (380)
T ss_pred CCCCEEECCCCCCHHHHHHHHCCC-CCCCCCCCCCCCCEEEEEEECCCCEEEEEECCCCCCCCCCCCCHHHH-HHHHHHH
T ss_conf 165146369886108998855589-75478875336874679994698669998777555775558772899-9999875
Q ss_pred HCCEEECCCCCC---HH---HH-----------HHHCCCCCCCCCCCCCCCCCCCH--------------HHHHHHHHHH
Q ss_conf 011020135898---56---63-----------43128985322223334465420--------------0000133332
Q gi|254780809|r 299 ADLILLLKEINS---KK---EI-----------SFPKNIDFIFIGTKSDLYSTYTE--------------EYDHLISSFT 347 (440)
Q Consensus 299 aDlil~v~D~~~---~~---~~-----------~~~~~~~~i~V~NK~Dl~~~~~~--------------~~~~~ISakt 347 (440)
+.++++|+|.+. .+ ++ ..+.++|.|+|+||+||...... ...+.|||.|
T Consensus 238 t~~LlhviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~kp~iiv~NK~Dl~~~~e~~~~~~~~~~~~~~~~~v~~ISA~t 317 (380)
T PRK12298 238 CRVLLHLIDIAPIDGSDPVENARIIVNELEKYSPKLAEKPRWLVFNKIDLLDEEEAEERAKEIVEALGWEGPVYLISAAS 317 (380)
T ss_pred HCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHCHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCC
T ss_conf 35899999688777519999999999999985976605987999988548997999999999999708888879997876
Q ss_pred HHHHHHHHHHHHHHHHHHC
Q ss_conf 3235899999999963220
Q gi|254780809|r 348 GEGLEELINKIKSILSNKF 366 (440)
Q Consensus 348 g~Gi~~L~~~I~~~l~~~~ 366 (440)
++|+++|+.++.+.+...-
T Consensus 318 geG~~~L~~~i~~~l~~~~ 336 (380)
T PRK12298 318 GEGTKELCWDLMTFIEENP 336 (380)
T ss_pred CCCHHHHHHHHHHHHHHCC
T ss_conf 8799999999999998672
No 49
>pfam01926 MMR_HSR1 GTPase of unknown function.
Probab=99.74 E-value=2.3e-18 Score=147.23 Aligned_cols=98 Identities=38% Similarity=0.459 Sum_probs=86.2
Q ss_pred CHHHHHHHHHCCHHCCCCCCCCCCEEECCCCCCCCCEEEEEEECCHHCCCCHHHHHHHHHHHHHHHHHHCCEEECCCCCC
Q ss_conf 18889999855200023454687211000124568358999508100024103566667888998503011020135898
Q gi|254780809|r 231 GKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINS 310 (440)
Q Consensus 231 GKSSL~N~L~~~~~aIVs~~~GTTRD~i~~~~~i~g~~~~l~DTaGir~t~d~IE~~GI~ra~~~i~~aDlil~v~D~~~ 310 (440)
|||||||+|+|+++++||+.||||||.....+.+++..+.|+||||+....+.-+.....++++.+..+|++++|+|+++
T Consensus 1 GKSsLiN~L~~~~~~~v~~~~gtT~~~~~~~~~~~~~~i~liDTPGi~~~~~~~~~~~~~~~~~~~~~~d~il~viD~~~ 80 (106)
T pfam01926 1 GKSTLINALTGKKRAIVSDYPGTTRDPNEGRVELDGKQIILVDTPGIIEGASKGEGELGNRTLEAIEEADLILHVVDASE 80 (106)
T ss_pred CHHHHHHHHHCCCCEEECCCCCCCCCCEEEEEEECCEEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEEECCC
T ss_conf 91279999978885555288998846355899889988999837873226504678889999972345737999999999
Q ss_pred HH---HH---H--HHCCCCCCCCCCC
Q ss_conf 56---63---4--3128985322223
Q gi|254780809|r 311 KK---EI---S--FPKNIDFIFIGTK 328 (440)
Q Consensus 311 ~~---~~---~--~~~~~~~i~V~NK 328 (440)
+. +. . ...++|+++|+||
T Consensus 81 ~~~~~d~~~~~~l~~~~~p~iiv~NK 106 (106)
T pfam01926 81 GLTEEDLEILDLLLELGKPVILVLNK 106 (106)
T ss_pred CCCHHHHHHHHHHHHCCCCEEEEEEC
T ss_conf 99989999999999869988999939
No 50
>KOG0410 consensus
Probab=99.74 E-value=2.9e-17 Score=139.60 Aligned_cols=228 Identities=23% Similarity=0.229 Sum_probs=140.7
Q ss_pred HHHHH-HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH--HHHH
Q ss_conf 36889-99887531431024566567769988865444311354431123325888864010001121233322--3455
Q gi|254780809|r 138 ETEMQ-RRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQG--KLGE 214 (440)
Q Consensus 138 ~t~~~-~~~a~~~l~G~ls~~i~~lr~~L~~~~a~iEa~IDF~dEedi~~~~~~~~~~~i~~i~~~l~~ll~~~--~~~~ 214 (440)
.|..+ ++.|+.++. .....+...-..+..-.... .++-. |.+++-....-+..+...++++|+...... +.++
T Consensus 98 ~T~earlqvalAemp-y~~~rl~r~~~hl~r~~g~~--v~gsg-es~id~d~~rllr~kea~lrKeL~~vrrkr~~r~gr 173 (410)
T KOG0410 98 VTAEARLQVALAEMP-YVGGRLERELQHLRRQSGGQ--VKGSG-ESIIDRDIRRLLRIKEAQLRKELQRVRRKRQRRVGR 173 (410)
T ss_pred HHHHHHHHHHHHCCC-CCCCHHHHHHHHHHHCCCCC--CCCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 647887765540586-33213778999987517870--03764-027677899999999999999999998877666413
Q ss_pred HHHHCCCEEEECCCCCCHHHHHHHHHCCHHCCCC-CCCCCCEEECCCCCCC-CCEEEEEEECCHHCC--CCHHHHHHHHH
Q ss_conf 4320230243114663188899998552000234-5468721100012456-835899950810002--41035666678
Q gi|254780809|r 215 IIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVT-DIPGTTRDVLTIDLDL-EGYLVKISDTAGIRE--TDDIVEKEGIK 290 (440)
Q Consensus 215 ~l~~g~~v~i~G~pN~GKSSL~N~L~~~~~aIVs-~~~GTTRD~i~~~~~i-~g~~~~l~DTaGir~--t~d~IE~~GI~ 290 (440)
.-.+-..|+++|++|+|||||+|+|++ .|+.- |.-..|-|.-.....+ +|..+.|.||-|+-. +-..|+.. +
T Consensus 174 ~~~s~pviavVGYTNaGKsTLikaLT~--Aal~p~drLFATLDpT~h~a~Lpsg~~vlltDTvGFisdLP~~LvaAF--~ 249 (410)
T KOG0410 174 EGESSPVIAVVGYTNAGKSTLIKALTK--AALYPNDRLFATLDPTLHSAHLPSGNFVLLTDTVGFISDLPIQLVAAF--Q 249 (410)
T ss_pred CCCCCCEEEEEEECCCCHHHHHHHHHH--HHCCCCCHHHEECCCHHHHCCCCCCCEEEEEECHHHHHHCCHHHHHHH--H
T ss_conf 357786289996347668899999875--005830001101253134300799867999603466654749999999--9
Q ss_pred HHHHHHHHHCCEEECCCCCCHHHHHH----------------HCCCCCCCCCCCCCCCCCCCH---HHHHHHHHHHHHHH
Q ss_conf 88998503011020135898566343----------------128985322223334465420---00001333323235
Q gi|254780809|r 291 RTFLEVENADLILLLKEINSKKEISF----------------PKNIDFIFIGTKSDLYSTYTE---EYDHLISSFTGEGL 351 (440)
Q Consensus 291 ra~~~i~~aDlil~v~D~~~~~~~~~----------------~~~~~~i~V~NK~Dl~~~~~~---~~~~~ISaktg~Gi 351 (440)
-+++.+.+||++++|.|.+.|.+... .+...++-|.||+|..+...+ ...+.|||++|+|+
T Consensus 250 ATLeeVaeadlllHvvDiShP~ae~q~e~Vl~vL~~igv~~~pkl~~mieVdnkiD~e~~~~e~E~n~~v~isaltgdgl 329 (410)
T KOG0410 250 ATLEEVAEADLLLHVVDISHPNAEEQRETVLHVLNQIGVPSEPKLQNMIEVDNKIDYEEDEVEEEKNLDVGISALTGDGL 329 (410)
T ss_pred HHHHHHHHCCEEEEEEECCCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCH
T ss_conf 99998752344899861579668888989999997469984777767874212356655667535578514301567547
Q ss_pred HHHHHHHHHHHHHHCCCCCCCE
Q ss_conf 8999999999632203588632
Q gi|254780809|r 352 EELINKIKSILSNKFKKLPFSI 373 (440)
Q Consensus 352 ~~L~~~I~~~l~~~~~~~~~~i 373 (440)
++|++++...+.....-.+..+
T Consensus 330 ~el~~a~~~kv~~~t~~~e~~L 351 (410)
T KOG0410 330 EELLKAEETKVASETTVDEDQL 351 (410)
T ss_pred HHHHHHHHHHHHHHHEEEEEEE
T ss_conf 9999988887654322346773
No 51
>PRK12297 obgE GTPase ObgE; Reviewed
Probab=99.73 E-value=5e-18 Score=144.87 Aligned_cols=144 Identities=19% Similarity=0.233 Sum_probs=109.4
Q ss_pred CCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCCEEECCCCCCCC-CEEEEEEECCHHCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 3024311466318889999855200023454687211000124568-358999508100024103566667888998503
Q gi|254780809|r 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE-GYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298 (440)
Q Consensus 220 ~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTTRD~i~~~~~i~-g~~~~l~DTaGir~t~d~IE~~GI~ra~~~i~~ 298 (440)
.-|.|+|.||||||||+++++..+ .-|.++|.||.-..-..+.++ +..+.+.|.|||-+-...=--+|. +-+++++.
T Consensus 159 ADVGLvG~PNaGKSTll~~is~A~-pkIa~YpFTTl~P~lGvv~~~~~~~~~iADiPGLIeGA~~g~GLG~-~FLrHieR 236 (429)
T PRK12297 159 ADVGLVGFPNVGKSTLLSVVSNAK-PKIANYHFTTLVPNLGVVETDDGRSFVMADLPGLIEGASEGVGLGH-QFLRHIER 236 (429)
T ss_pred CCCCEEECCCCCHHHHHHHHHCCC-CCCCCCCCCCCCCEEEEEEECCCCEEEEEECCCCCCCCCCCCCCCH-HHHHHHHH
T ss_conf 276336479984578998875489-7557877402576666898569866999626745677446888668-88887662
Q ss_pred HCCEEECCCCCCH---H---HH-----------HHHCCCCCCCCCCCCCCCCCCCH-----------HHHHHHHHHHHHH
Q ss_conf 0110201358985---6---63-----------43128985322223334465420-----------0000133332323
Q gi|254780809|r 299 ADLILLLKEINSK---K---EI-----------SFPKNIDFIFIGTKSDLYSTYTE-----------EYDHLISSFTGEG 350 (440)
Q Consensus 299 aDlil~v~D~~~~---~---~~-----------~~~~~~~~i~V~NK~Dl~~~~~~-----------~~~~~ISaktg~G 350 (440)
+.++++|+|.+.. + ++ ..+..+|.|+|+||+|+...... ...+.|||.|++|
T Consensus 237 ~~~L~hviD~s~~~~~dp~~d~~~i~~EL~~y~~~L~~kp~ivv~NK~Dl~~~~~~~~~~~~~~~~~~~i~~iSa~t~eg 316 (429)
T PRK12297 237 TRVIVHVIDMSGSEGRDPIEDYETINKELKKYNLRLLERPQIIVANKMDLPEAEENLEEFKEKLAKGKKVFPISALTKQG 316 (429)
T ss_pred CCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHCHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCC
T ss_conf 46799999787877779899999999999986898726966999976458576999999999753469789996844519
Q ss_pred HHHHHHHHHHHHHHH
Q ss_conf 589999999996322
Q gi|254780809|r 351 LEELINKIKSILSNK 365 (440)
Q Consensus 351 i~~L~~~I~~~l~~~ 365 (440)
+++|+..+.+.+...
T Consensus 317 l~~l~~~i~~~l~~~ 331 (429)
T PRK12297 317 LDELLYAIAELLEKT 331 (429)
T ss_pred HHHHHHHHHHHHHHC
T ss_conf 999999999999857
No 52
>COG1163 DRG Predicted GTPase [General function prediction only]
Probab=99.72 E-value=4.8e-18 Score=145.04 Aligned_cols=142 Identities=25% Similarity=0.349 Sum_probs=109.7
Q ss_pred HHC-CCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCCEEECCCCCCCCCEEEEEEECCHHCCCCHHHHHHHH---HHH
Q ss_conf 202-3024311466318889999855200023454687211000124568358999508100024103566667---888
Q gi|254780809|r 217 RNG-YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGI---KRT 292 (440)
Q Consensus 217 ~~g-~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTTRD~i~~~~~i~g~~~~l~DTaGir~t~d~IE~~GI---~ra 292 (440)
++| .+|+++|+||||||||+|+|++.+- =|.++|.||.-.+-+.+.++|..++++|+|||-+... -|- +..
T Consensus 60 KsGda~v~lVGfPsvGKStLL~~LTnt~s-eva~y~FTTl~~vPG~l~Y~ga~IQild~Pgii~gas----~g~grG~~v 134 (365)
T COG1163 60 KSGDATVALVGFPSVGKSTLLNKLTNTKS-EVADYPFTTLEPVPGMLEYKGAQIQLLDLPGIIEGAS----SGRGRGRQV 134 (365)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHCCCC-CCCCCCCEECCCCCCEEEECCCEEEEECCCCCCCCCC----CCCCCCCEE
T ss_conf 25773899976887458999988768876-4345674102445744754781699972763125765----688876465
Q ss_pred HHHHHHHCCEEECCCCCCHHH-HHH-------------------------------------------------------
Q ss_conf 998503011020135898566-343-------------------------------------------------------
Q gi|254780809|r 293 FLEVENADLILLLKEINSKKE-ISF------------------------------------------------------- 316 (440)
Q Consensus 293 ~~~i~~aDlil~v~D~~~~~~-~~~------------------------------------------------------- 316 (440)
+..+..||+|++|+|+..... ...
T Consensus 135 ls~~R~ADlIiiVld~~~~~~~~~~i~~ELe~~GIrlnk~~p~V~I~kk~~gGI~i~~t~~l~~~d~~~ir~iL~Ey~I~ 214 (365)
T COG1163 135 LSVARNADLIIIVLDVFEDPHHRDIIERELEDVGIRLNKRPPDVTIKKKESGGIRINGTGPLTHLDEDTVRAILREYRIH 214 (365)
T ss_pred EEEECCCCEEEEEEECCCCHHHHHHHHHHHHHCCEEECCCCCCEEEEEECCCCEEEECCCCCCCCCHHHHHHHHHHHCCC
T ss_conf 46521588899997168882488999999985676821799965999952598798045456668999999999972836
Q ss_pred ----------------------HCCCCCCCCCCCCCCCCCCCH------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf ----------------------128985322223334465420------00001333323235899999999963
Q gi|254780809|r 317 ----------------------PKNIDFIFIGTKSDLYSTYTE------EYDHLISSFTGEGLEELINKIKSILS 363 (440)
Q Consensus 317 ----------------------~~~~~~i~V~NK~Dl~~~~~~------~~~~~ISaktg~Gi~~L~~~I~~~l~ 363 (440)
..-+|.++|+||+|+.+...- ...+.+||+++-|+++|++.|...+.
T Consensus 215 nA~V~Ir~dvTlDd~id~l~~nrvY~p~l~v~NKiD~~~~e~~~~l~~~~~~v~isa~~~~nld~L~e~i~~~L~ 289 (365)
T COG1163 215 NADVLIREDVTLDDLIDALEGNRVYKPALYVVNKIDLPGLEELERLARKPNSVPISAKKGINLDELKERIWDVLG 289 (365)
T ss_pred CEEEEEECCCCHHHHHHHHHHCCEEEEEEEEEECCCCCCHHHHHHHHHCCCEEEEECCCCCCHHHHHHHHHHHHC
T ss_conf 306999468868999999841621323689995255668788999973456289865568798899999998748
No 53
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=99.72 E-value=4.8e-18 Score=144.98 Aligned_cols=61 Identities=36% Similarity=0.528 Sum_probs=53.5
Q ss_pred HHHHHCCCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCCEEECCCCCCCCCEEEEEEECCHH
Q ss_conf 5432023024311466318889999855200023454687211000124568358999508100
Q gi|254780809|r 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277 (440)
Q Consensus 214 ~~l~~g~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTTRD~i~~~~~i~g~~~~l~DTaGi 277 (440)
.....+++|+|+|+||||||||+|+|+|+++++|+++||||||.++..++ ..+.|+||||+
T Consensus 95 ~~~~~~~~i~ivG~PNVGKSsliN~L~~~~~~~v~~~pGtTrd~~~i~~~---~~~~liDTpGi 155 (155)
T cd01849 95 GKLKKSITVGVIGYPNVGKSSVINALLNKLKLKVGNVPGTTTSQQEVKLD---NKIKLLDTPGI 155 (155)
T ss_pred CCCCCCEEEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCEECEEEEEEC---CCEEEEECCCC
T ss_conf 24556608999877774477899998478506266999838355999968---99899979299
No 54
>PRK12296 obgE GTPase ObgE; Reviewed
Probab=99.71 E-value=2.3e-17 Score=140.27 Aligned_cols=144 Identities=18% Similarity=0.166 Sum_probs=110.3
Q ss_pred CCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCCEEECCCCCCCCCEEEEEEECCHHCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 30243114663188899998552000234546872110001245683589995081000241035666678889985030
Q gi|254780809|r 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299 (440)
Q Consensus 220 ~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTTRD~i~~~~~i~g~~~~l~DTaGir~t~d~IE~~GI~ra~~~i~~a 299 (440)
.-|.|+|.||||||||+++++..+- -+.++|.||--..-..+..+...|++.|-|||-+-..+=--+|. +-+++++.+
T Consensus 160 ADVGLvG~PNaGKSTLl~~iS~Akp-kIA~YpFTTL~PnLGvv~~~d~~f~iADiPGLIeGAs~g~GLG~-~FLRHieR~ 237 (495)
T PRK12296 160 ADVGLVGFPSAGKSSLISAISAAKP-KIADYPFTTLVPNLGVVSAGDHTFTVADVPGLIPGASEGRGLGL-DFLRHIERC 237 (495)
T ss_pred ECCCEECCCCCCHHHHHHHHHCCCC-CCCCCCCCCCCCEEEEEECCCCEEEEEECCCCCCCCCCCCCCHH-HHHHHHHHC
T ss_conf 1311011899961589988754887-65787755457546789707952899856643465003898439-999987525
Q ss_pred CCEEECCCCCCH----H---HHHH--------------------HCCCCCCCCCCCCCCCCCCCH------------HHH
Q ss_conf 110201358985----6---6343--------------------128985322223334465420------------000
Q gi|254780809|r 300 DLILLLKEINSK----K---EISF--------------------PKNIDFIFIGTKSDLYSTYTE------------EYD 340 (440)
Q Consensus 300 Dlil~v~D~~~~----~---~~~~--------------------~~~~~~i~V~NK~Dl~~~~~~------------~~~ 340 (440)
-++++|+|.+.. + ++.. +.++|.|+|+||+|+...... ...
T Consensus 238 ~vL~hviD~~~~e~~rDP~~d~~~I~~EL~~Y~~~l~~~~~~~~L~erpqIVvlNKiDlp~a~e~~e~~~~~l~~~g~~V 317 (495)
T PRK12296 238 AVLVHVVDCATLEPGRDPISDIDALEAELAAYTPTLQGDAGLGDLAERPRLVVLNKIDVPDARELAEFVRPELEERGWPV 317 (495)
T ss_pred CEEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCHHHHCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCE
T ss_conf 47999996887666789699999999999971914304433232101965999966567576999999999998749957
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 0133332323589999999996322
Q gi|254780809|r 341 HLISSFTGEGLEELINKIKSILSNK 365 (440)
Q Consensus 341 ~~ISaktg~Gi~~L~~~I~~~l~~~ 365 (440)
+.|||.|++|+++|+..+.+++...
T Consensus 318 f~ISA~t~eGl~eL~~~l~elv~~~ 342 (495)
T PRK12296 318 FEVSTVTREGLRPLSFALAELVSAA 342 (495)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHC
T ss_conf 9986410038999999999999856
No 55
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=99.70 E-value=6.1e-17 Score=137.33 Aligned_cols=140 Identities=23% Similarity=0.323 Sum_probs=102.7
Q ss_pred HHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCCEEECCCCCCCCCEEEEEEECCHHCCCCHHHHHHH
Q ss_conf 22345543202302431146631888999985520002345468721100012456835899950810002410356666
Q gi|254780809|r 209 QGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEG 288 (440)
Q Consensus 209 ~~~~~~~l~~g~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTTRD~i~~~~~i~g~~~~l~DTaGir~t~d~IE~~G 288 (440)
..+..+.-+..++|+++|.||||||||+|++.+.+..-+++..|.+ ...+.++++.+.+.||||-....
T Consensus 4 ~~~~~~~~~~~~KililG~~~sGKTsll~~l~~~~~~~~~pT~G~~----~~~~~~~~~~l~iwD~~G~e~~~------- 72 (173)
T cd04154 4 IIRKQKLKEREMRILILGLDNAGKTTILKKLLGEDIDTISPTLGFQ----IKTLEYEGYKLNIWDVGGQKTLR------- 72 (173)
T ss_pred HHHHHHCCCCCEEEEEECCCCCCHHHHHHHHCCCCCCCCCCCCCEE----EEEEEECCEEEEEEECCCCCCCC-------
T ss_conf 7766554457318999989997889999998399989726705777----89999899999999668860200-------
Q ss_pred HHHHHHHHHHHCCEEECCCCCCHHHHH-------------HHCCCCCCCCCCCCCCCCCCCHH----------------H
Q ss_conf 788899850301102013589856634-------------31289853222233344654200----------------0
Q gi|254780809|r 289 IKRTFLEVENADLILLLKEINSKKEIS-------------FPKNIDFIFIGTKSDLYSTYTEE----------------Y 339 (440)
Q Consensus 289 I~ra~~~i~~aDlil~v~D~~~~~~~~-------------~~~~~~~i~V~NK~Dl~~~~~~~----------------~ 339 (440)
.-.......||.++||+|+++...+. ...+.|++++.||+|+....... .
T Consensus 73 -~~~~~y~~~a~~ii~VvD~td~~~~~~~~~~l~~ll~~~~~~~~pili~~NK~Dl~~~~~~~ei~~~l~l~~~~~~~~~ 151 (173)
T cd04154 73 -PYWRNYFESTDALIWVVDSSDRLRLDDCKRELKELLQEERLAGATLLILANKQDLPGALSEEEIREALELDKISSHHWR 151 (173)
T ss_pred -HHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHCCCCCCE
T ss_conf -5899972266538999855657889999999999986354159847999876567778899999999868744579829
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q ss_conf 001333323235899999999
Q gi|254780809|r 340 DHLISSFTGEGLEELINKIKS 360 (440)
Q Consensus 340 ~~~ISaktg~Gi~~L~~~I~~ 360 (440)
.+.+||+||+||+++.+.|.+
T Consensus 152 ~~~~SAktG~gI~e~f~wL~~ 172 (173)
T cd04154 152 IQPCSAVTGEGLLQGIDWLVD 172 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHC
T ss_conf 999889669298999999864
No 56
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=99.68 E-value=3.6e-17 Score=138.89 Aligned_cols=57 Identities=32% Similarity=0.458 Sum_probs=49.5
Q ss_pred HCCCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCCEEECCCCCCCCCEEEEEEECCHH
Q ss_conf 023024311466318889999855200023454687211000124568358999508100
Q gi|254780809|r 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277 (440)
Q Consensus 218 ~g~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTTRD~i~~~~~i~g~~~~l~DTaGi 277 (440)
..++|+++|.||||||||+|+|.|+++++|+++|||||+.-. +.++. .+.|+||||+
T Consensus 101 ~~i~v~ivG~PNVGKSSlIN~L~g~k~~~vs~~PG~Tr~~q~--i~~~~-~i~liDTPGi 157 (157)
T cd01858 101 KQISVGFIGYPNVGKSSIINTLRSKKVCKVAPIPGETKVWQY--ITLMK-RIYLIDCPGV 157 (157)
T ss_pred CCEEEEEEECCCCCHHHHHHHHHCCCEEEECCCCCEEEEEEE--EEECC-CEEEEECCCC
T ss_conf 646999982588533688988726735886598833777799--99689-9999969099
No 57
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=99.67 E-value=3.4e-17 Score=139.11 Aligned_cols=59 Identities=36% Similarity=0.546 Sum_probs=51.9
Q ss_pred HHHCCCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCCEEECCCCCCCCCEEEEEEECCHH
Q ss_conf 32023024311466318889999855200023454687211000124568358999508100
Q gi|254780809|r 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277 (440)
Q Consensus 216 l~~g~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTTRD~i~~~~~i~g~~~~l~DTaGi 277 (440)
...+++|+++|+||||||||+|+|.|+++++|+++||||||+.+..+ +..+.|+||||+
T Consensus 112 ~~~~~~v~ivG~PNVGKSSlIN~L~~~~~~~v~~~pGtTr~~~~i~~---~~~~~liDTPGI 170 (171)
T cd01856 112 LPRGIRAMVVGIPNVGKSTLINRLRGKKVAKVGNKPGVTKGIQWIKI---SPGIYLLDTPGI 170 (171)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCCCCEEEEEE---CCCEEEEECCCC
T ss_conf 77771799973798761799999748863887698985326679996---899999979988
No 58
>pfam00025 Arf ADP-ribosylation factor family. Pfam combines a number of different Prosite families together
Probab=99.66 E-value=4.3e-16 Score=131.47 Aligned_cols=134 Identities=21% Similarity=0.295 Sum_probs=97.2
Q ss_pred HHHCCCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCCEEECCCCCCCCCEEEEEEECCHHCCCCHHHHHHHHHHHHHH
Q ss_conf 32023024311466318889999855200023454687211000124568358999508100024103566667888998
Q gi|254780809|r 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295 (440)
Q Consensus 216 l~~g~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTTRD~i~~~~~i~g~~~~l~DTaGir~t~d~IE~~GI~ra~~~ 295 (440)
..+.++|+++|.||||||||+|++.+.+.+-+ .| |-.+-...+.++++.+.+.||||-..-. ......
T Consensus 11 ~~k~~Ki~llG~~~vGKTsll~~~~~~~~~~~--~p--Tig~~~~~v~~~~~~~~iwDt~Gqe~~~--------~~~~~y 78 (174)
T pfam00025 11 LNKEMRILILGLDNAGKTTILYKLKLGEIVTT--IP--TIGFNVETVTYKNVKFTVWDVGGQESLR--------PLWRNY 78 (174)
T ss_pred CCCEEEEEEECCCCCCHHHHHHHHHCCCCCCC--CC--CCCCEEEEEEECCEEEEEEECCCCCCCC--------HHHHHH
T ss_conf 89666999999999988999999954998874--47--4682389999899999998279870232--------679988
Q ss_pred HHHHCCEEECCCCCCHHHHH-------------HHCCCCCCCCCCCCCCCCCCCHH----------------HHHHHHHH
Q ss_conf 50301102013589856634-------------31289853222233344654200----------------00013333
Q gi|254780809|r 296 VENADLILLLKEINSKKEIS-------------FPKNIDFIFIGTKSDLYSTYTEE----------------YDHLISSF 346 (440)
Q Consensus 296 i~~aDlil~v~D~~~~~~~~-------------~~~~~~~i~V~NK~Dl~~~~~~~----------------~~~~ISak 346 (440)
...||.+++|+|.+++..+. ...+.|+++|.||+||.+..... ..+.+||+
T Consensus 79 ~~~a~~ii~V~D~t~~~s~~~~~~~l~~~l~~~~~~~~piliv~NK~DL~~~~~~~ei~~~~~~~~~~~~~~~~~~~SAk 158 (174)
T pfam00025 79 FPNTDAVIFVVDSADRDRIEEAKEELHALLNEEELADAPLLILANKQDLPGAMSEAEIRELLGLHELKSRPWEIQGCSAV 158 (174)
T ss_pred HCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEECC
T ss_conf 41782689998678678799999999998754235897089987256676789999999999786441799689999886
Q ss_pred HHHHHHHHHHHHHHH
Q ss_conf 232358999999999
Q gi|254780809|r 347 TGEGLEELINKIKSI 361 (440)
Q Consensus 347 tg~Gi~~L~~~I~~~ 361 (440)
||+|++++.+.|.+.
T Consensus 159 tG~gI~e~f~~L~~~ 173 (174)
T pfam00025 159 TGEGLDEGLDWLSNY 173 (174)
T ss_pred CCCCHHHHHHHHHHH
T ss_conf 795989999999953
No 59
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=99.66 E-value=3.8e-16 Score=131.84 Aligned_cols=135 Identities=25% Similarity=0.331 Sum_probs=99.1
Q ss_pred HHHHHCCCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCCEEECCCCCCCCCEEEEEEECCHHCCCCHHHHHHHHHHHH
Q ss_conf 54320230243114663188899998552000234546872110001245683589995081000241035666678889
Q gi|254780809|r 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTF 293 (440)
Q Consensus 214 ~~l~~g~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTTRD~i~~~~~i~g~~~~l~DTaGir~t~d~IE~~GI~ra~ 293 (440)
+.-.+-++|+++|.+|||||||+|++.+.+.+.+.+..|. -...+..+++.+.+.||+|-+.-. ....
T Consensus 9 k~~~~~~Ki~ilG~~~sGKTsll~~l~~~~~~~~~pT~g~----~~~~v~~~~~~~~lwD~~G~~~~~--------~~~~ 76 (173)
T cd04155 9 RKSSEEPRILILGLDNAGKTTILKQLASEDISHITPTQGF----NIKTVQSDGFKLNVWDIGGQRAIR--------PYWR 76 (173)
T ss_pred HCCCCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCE----EEEEEEECCEEEEEEECCCCHHHH--------HHHH
T ss_conf 5568775899997999988999999856998660681132----379999899999998558751012--------6899
Q ss_pred HHHHHHCCEEECCCCCCHHHHH-------------HHCCCCCCCCCCCCCCCCCCCHH----------------HHHHHH
Q ss_conf 9850301102013589856634-------------31289853222233344654200----------------000133
Q gi|254780809|r 294 LEVENADLILLLKEINSKKEIS-------------FPKNIDFIFIGTKSDLYSTYTEE----------------YDHLIS 344 (440)
Q Consensus 294 ~~i~~aDlil~v~D~~~~~~~~-------------~~~~~~~i~V~NK~Dl~~~~~~~----------------~~~~IS 344 (440)
.....||.++||+|.++...+. ..++.|++++.||+|+....... ..+.+|
T Consensus 77 ~y~~~a~~iI~VvD~td~~~~~~~~~~l~~~l~~~~~~~~PiLiv~NK~Dl~~a~~~~eI~~~l~l~~~~~~~~~i~~~S 156 (173)
T cd04155 77 NYFENTDCLIYVIDSADKKRLEEAGAELVELLEEEKLAGVPVLVFANKQDLATAAPAEEIAEALNLHDLRDRTWHIQACS 156 (173)
T ss_pred HHCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCHHHHHHHHCHHHCCCCCCEEEEEE
T ss_conf 76555637999996675688999999999997413006983899997666777899999999858764348875899957
Q ss_pred HHHHHHHHHHHHHHHH
Q ss_conf 3323235899999999
Q gi|254780809|r 345 SFTGEGLEELINKIKS 360 (440)
Q Consensus 345 aktg~Gi~~L~~~I~~ 360 (440)
|+||+|+++..+-|.+
T Consensus 157 A~tG~Gi~E~f~WL~~ 172 (173)
T cd04155 157 AKTGEGLQEGMNWVCK 172 (173)
T ss_pred CCCCCCHHHHHHHHHC
T ss_conf 8579398999999854
No 60
>KOG1489 consensus
Probab=99.65 E-value=1.2e-16 Score=135.26 Aligned_cols=142 Identities=24% Similarity=0.332 Sum_probs=107.9
Q ss_pred HCCCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCCEEECCCCCCCCCEE-EEEEECCHHCCCCHHHHHHHHHHHHHHH
Q ss_conf 023024311466318889999855200023454687211000124568358-9995081000241035666678889985
Q gi|254780809|r 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL-VKISDTAGIRETDDIVEKEGIKRTFLEV 296 (440)
Q Consensus 218 ~g~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTTRD~i~~~~~i~g~~-~~l~DTaGir~t~d~IE~~GI~ra~~~i 296 (440)
.-..|.++|.||||||||+|+|+..+- -|.++|.||--.--..+.++++. +++.|-|||-+-...=--+|++ -++.+
T Consensus 195 siadvGLVG~PNAGKSTLL~als~AKp-kVa~YaFTTL~P~iG~v~yddf~q~tVADiPGiI~GAh~nkGlG~~-FLrHi 272 (366)
T KOG1489 195 SIADVGLVGFPNAGKSTLLNALSRAKP-KVAHYAFTTLRPHIGTVNYDDFSQITVADIPGIIEGAHMNKGLGYK-FLRHI 272 (366)
T ss_pred EECCCCEECCCCCCHHHHHHHHHCCCC-CCCCCCEEEECCCCCEEECCCCCEEEECCCCCCCCCCCCCCCCCHH-HHHHH
T ss_conf 105543212898867889877640587-5455420344464112513545146850476534454346765489-99988
Q ss_pred HHHCCEEECCCCCCH---HH---HH-----------HHCCCCCCCCCCCCCCCCCCCH-----------HHHHHHHHHHH
Q ss_conf 030110201358985---66---34-----------3128985322223334465420-----------00001333323
Q gi|254780809|r 297 ENADLILLLKEINSK---KE---IS-----------FPKNIDFIFIGTKSDLYSTYTE-----------EYDHLISSFTG 348 (440)
Q Consensus 297 ~~aDlil~v~D~~~~---~~---~~-----------~~~~~~~i~V~NK~Dl~~~~~~-----------~~~~~ISaktg 348 (440)
+.+++++||+|.+.+ .. +. .+.++|.++|.||+|+...... ...+.+||+++
T Consensus 273 ER~~~l~fVvD~s~~~~~~p~~~~~lL~~ELe~yek~L~~rp~liVaNKiD~~eae~~~l~~L~~~lq~~~V~pvsA~~~ 352 (366)
T KOG1489 273 ERCKGLLFVVDLSGKQLRNPWQQLQLLIEELELYEKGLADRPALIVANKIDLPEAEKNLLSSLAKRLQNPHVVPVSAKSG 352 (366)
T ss_pred HHHCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCCCEEEEEECCC
T ss_conf 75334899997787555887899999999999986542358538997446736678889999998737981787640046
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 2358999999999
Q gi|254780809|r 349 EGLEELINKIKSI 361 (440)
Q Consensus 349 ~Gi~~L~~~I~~~ 361 (440)
+|++.|++.|.+.
T Consensus 353 egl~~ll~~lr~~ 365 (366)
T KOG1489 353 EGLEELLNGLREL 365 (366)
T ss_pred CCHHHHHHHHHHC
T ss_conf 4568899877630
No 61
>COG0218 Predicted GTPase [General function prediction only]
Probab=99.65 E-value=5.8e-16 Score=130.56 Aligned_cols=144 Identities=28% Similarity=0.326 Sum_probs=99.4
Q ss_pred HCCCEEEECCCCCCHHHHHHHHHCCH-HCCCCCCCCCCEEECCCCCCCCCEEEEEEECCHHCCCCHHH-HHHHHHHH-HH
Q ss_conf 02302431146631888999985520-00234546872110001245683589995081000241035-66667888-99
Q gi|254780809|r 218 NGYKIVILGHSNAGKSSLFNALAKKD-VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIV-EKEGIKRT-FL 294 (440)
Q Consensus 218 ~g~~v~i~G~pN~GKSSL~N~L~~~~-~aIVs~~~GTTRD~i~~~~~i~g~~~~l~DTaGir~t~d~I-E~~GI~ra-~~ 294 (440)
.++.|+++|+.|||||||+|+|++++ -|=||..||.||-+.. +++++ .+.|+|.||+.-++-.- +++-+.+. .+
T Consensus 23 ~~~EIaF~GRSNVGKSSlIN~l~~~k~LArtSktPGrTq~iNf--f~~~~-~~~lVDlPGYGyAkv~k~~~e~w~~~i~~ 99 (200)
T COG0218 23 DLPEIAFAGRSNVGKSSLINALTNQKNLARTSKTPGRTQLINF--FEVDD-ELRLVDLPGYGYAKVPKEVKEKWKKLIEE 99 (200)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCEEECCCCCCCCCEEEE--EEECC-CEEEEECCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 8967999816866689999999678635565799985423679--98358-57998179954032899999999999999
Q ss_pred HHH---HHCCEEECCCCCCHH------HHHH--HCCCCCCCCCCCCCCCCCCCH----------------HH--HHHHHH
Q ss_conf 850---301102013589856------6343--128985322223334465420----------------00--001333
Q gi|254780809|r 295 EVE---NADLILLLKEINSKK------EISF--PKNIDFIFIGTKSDLYSTYTE----------------EY--DHLISS 345 (440)
Q Consensus 295 ~i~---~aDlil~v~D~~~~~------~~~~--~~~~~~i~V~NK~Dl~~~~~~----------------~~--~~~ISa 345 (440)
.++ +-..++.|+|+.... .+++ ..+.|+++|+||+|..+.... .. ....|+
T Consensus 100 YL~~R~~L~~vvlliD~r~~~~~~D~em~~~l~~~~i~~~vv~tK~DKi~~~~~~k~l~~v~~~l~~~~~~~~~~~~~ss 179 (200)
T COG0218 100 YLEKRANLKGVVLLIDARHPPKDLDREMIEFLLELGIPVIVVLTKADKLKKSERNKQLNKVAEELKKPPPDDQWVVLFSS 179 (200)
T ss_pred HHHHCHHHEEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEEC
T ss_conf 99635222489999978999868799999999975998699997110377467888999999984689886643999865
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q ss_conf 3232358999999999632
Q gi|254780809|r 346 FTGEGLEELINKIKSILSN 364 (440)
Q Consensus 346 ktg~Gi~~L~~~I~~~l~~ 364 (440)
.++.|+++|.+.|.+.+..
T Consensus 180 ~~k~Gi~~l~~~i~~~~~~ 198 (200)
T COG0218 180 LKKKGIDELKAKILEWLKE 198 (200)
T ss_pred CCCCCHHHHHHHHHHHHHC
T ss_conf 4544899999999998640
No 62
>TIGR02729 Obg_CgtA GTP-binding protein Obg/CgtA; InterPro: IPR014100 This entry describes a universal, mostly one-gene-per-genome GTP-binding protein that associates with ribosomal subunits and appears to play a role in ribosomal RNA maturation. Mutations in this gene are pleiotropic, but it appears that effects on cellular functions such as chromosome partition may be secondary to the effect on ribosome structure..
Probab=99.65 E-value=1.5e-16 Score=134.70 Aligned_cols=112 Identities=22% Similarity=0.259 Sum_probs=86.4
Q ss_pred CCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCCEEECCCCCCCCCE----EEEEEECCHHCCCCHHHHHHHHHHHHHH
Q ss_conf 302431146631888999985520002345468721100012456835----8999508100024103566667888998
Q gi|254780809|r 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY----LVKISDTAGIRETDDIVEKEGIKRTFLE 295 (440)
Q Consensus 220 ~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTTRD~i~~~~~i~g~----~~~l~DTaGir~t~d~IE~~GI~ra~~~ 295 (440)
.-|.|||.||||||||+|+++..+ .-|.|||.||--..=..+.++.. .|.+.|-|||=|-..+==-+|+ +=+++
T Consensus 159 ADVGLvGfPNAGKSTLLs~~S~Ak-PKiAdYPFTTL~P~LGvv~~~~~~Y~~~fviADIPGLIEGAs~G~GLG~-~FLKH 236 (296)
T TIGR02729 159 ADVGLVGFPNAGKSTLLSAISNAK-PKIADYPFTTLEPNLGVVRVDDNKYERSFVIADIPGLIEGASEGKGLGH-KFLKH 236 (296)
T ss_pred EEEEEECCCCCCHHHHHHHHHCCC-CEECCCCCCCCCCCEEEEEECCCCEEEEEEEEECCCCHHHHHCCCCCCH-HHHHH
T ss_conf 202103578874688888876278-8223878745653112898748741688999856861566626887533-55457
Q ss_pred HHHHCCEEECCCCCCH-----HH---HH--------------HHCCCCCCCCCCCCCCCC
Q ss_conf 5030110201358985-----66---34--------------312898532222333446
Q gi|254780809|r 296 VENADLILLLKEINSK-----KE---IS--------------FPKNIDFIFIGTKSDLYS 333 (440)
Q Consensus 296 i~~aDlil~v~D~~~~-----~~---~~--------------~~~~~~~i~V~NK~Dl~~ 333 (440)
|+.+-+++||+|++.. +. +. .+.++|.|+|+||+|+..
T Consensus 237 IERt~~L~hviD~~~~qlSkh~~~~p~~~y~~l~~EL~~Y~~~L~~k~~~iv~NK~Dl~~ 296 (296)
T TIGR02729 237 IERTRLLLHVIDASGIQLSKHDGRDPIEDYETLRNELELYSPELADKPQIIVLNKIDLLD 296 (296)
T ss_pred HHHEEEEEEEEECCCCEEEECCCCCHHHHHHHHHHHHHHCCHHHCCCCEEEEEEECCCCC
T ss_conf 520266887980687534242898889999999999975087362780799986067789
No 63
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=99.64 E-value=1.1e-16 Score=135.54 Aligned_cols=57 Identities=30% Similarity=0.434 Sum_probs=49.4
Q ss_pred HCCCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCCEEECCCCCCCCCEEEEEEECCHH
Q ss_conf 023024311466318889999855200023454687211000124568358999508100
Q gi|254780809|r 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277 (440)
Q Consensus 218 ~g~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTTRD~i~~~~~i~g~~~~l~DTaGi 277 (440)
+.++++++|.||||||||+|+|.|+++++|++.||||||.... .+ +..+.|+||||+
T Consensus 100 ~~~~v~ivG~PNVGKSTLIN~L~~~~~~~v~~~pGtTr~~~~i--~~-~~~~~liDTpGi 156 (156)
T cd01859 100 KEGKVGVVGYPNVGKSSIINALKGRHSASTSPSPGYTKGEQLV--KI-TSKIYLLDTPGV 156 (156)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCEEEECCCCCEECCEEEE--EE-CCCEEEEECCCC
T ss_conf 6628999814784598999997488137775999807055999--97-998899989099
No 64
>pfam00071 Ras Ras family. Includes sub-families Ras, Rab, Rac, Ral, Ran, Rap Ypt1 and more. Shares P-loop motif with GTP_EFTU, arf and myosin_head. See pfam00009 pfam00025, pfam00063. As regards Rab GTPases, these are important regulators of vesicle formation, motility and fusion. They share a fold in common with all Ras GTPases: this is a six-stranded beta-sheet surrounded by five alpha-helices.
Probab=99.60 E-value=4.9e-15 Score=124.13 Aligned_cols=133 Identities=26% Similarity=0.322 Sum_probs=97.9
Q ss_pred CEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCCEEECCCCCCCCCEE--EEEEECCHHCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 024311466318889999855200023454687211000124568358--999508100024103566667888998503
Q gi|254780809|r 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL--VKISDTAGIRETDDIVEKEGIKRTFLEVEN 298 (440)
Q Consensus 221 ~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTTRD~i~~~~~i~g~~--~~l~DTaGir~t~d~IE~~GI~ra~~~i~~ 298 (440)
||+++|.|+||||||+|++++.+- .....|..++|.....+.++|.+ +.+.||+|..+-. . .....+..
T Consensus 1 Ki~vvG~~~vGKTsli~r~~~~~f-~~~~~~t~~~~~~~~~~~~~~~~~~~~i~Dt~G~e~~~----~----~~~~~~~~ 71 (162)
T pfam00071 1 KLVLVGDGGVGKSSLLIRFTQNKF-PEEYIPTIGVDFYTKTIEVDGKTVKLQIWDTAGQERFR----A----LRPLYYRG 71 (162)
T ss_pred CEEEECCCCCCHHHHHHHHHHCCC-CCCCCCCCEEEEEEEEEEECCEEEEEEEEECCCCHHHH----H----HHHHHHCC
T ss_conf 989999799779999999961999-98747741355678999999999999999789872046----7----88998625
Q ss_pred HCCEEECCCCCCHHHHHH------------HCCCCCCCCCCCCCCCCCCCHH-------------HHHHHHHHHHHHHHH
Q ss_conf 011020135898566343------------1289853222233344654200-------------000133332323589
Q gi|254780809|r 299 ADLILLLKEINSKKEISF------------PKNIDFIFIGTKSDLYSTYTEE-------------YDHLISSFTGEGLEE 353 (440)
Q Consensus 299 aDlil~v~D~~~~~~~~~------------~~~~~~i~V~NK~Dl~~~~~~~-------------~~~~ISaktg~Gi~~ 353 (440)
||.+++|+|.+++..+.. ..+.|+++|.||+||....... .-+.+||++|.|+++
T Consensus 72 ad~~iivfd~~~~~S~~~i~~~~~~i~~~~~~~~piilvgnK~Dl~~~~~i~~~e~~~~a~~~~~~y~e~Sak~g~gI~~ 151 (162)
T pfam00071 72 AQGFLLVYDITSRDSFENVKKWLEEILRHADDNVPIVLVGNKCDLEDQRVVSTEEGEALAKELGLPFMETSAKTNENVEE 151 (162)
T ss_pred CCCCEEECCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHCCCCCHHHHHHHHHHHCCEEEEECCCCCCCHHH
T ss_conf 76550423489889999999999999985798862889975247465188999999999998099799973788829999
Q ss_pred HHHHHHHHH
Q ss_conf 999999996
Q gi|254780809|r 354 LINKIKSIL 362 (440)
Q Consensus 354 L~~~I~~~l 362 (440)
+.+.|.+.+
T Consensus 152 ~F~~i~~~i 160 (162)
T pfam00071 152 AFEELAREI 160 (162)
T ss_pred HHHHHHHHH
T ss_conf 999999996
No 65
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=99.59 E-value=7.6e-16 Score=129.76 Aligned_cols=57 Identities=37% Similarity=0.503 Sum_probs=49.3
Q ss_pred HCCCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCCEEECCCCCCCCCEEEEEEECCHH
Q ss_conf 023024311466318889999855200023454687211000124568358999508100
Q gi|254780809|r 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277 (440)
Q Consensus 218 ~g~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTTRD~i~~~~~i~g~~~~l~DTaGi 277 (440)
+..+|+++|.||||||||+|+|.|+++++|++.|||||+.-+.. ++ -.+.|+||||+
T Consensus 82 ~~~~i~ivG~PNVGKSSlIN~L~g~k~~~v~~~PG~Tr~~~~i~--~~-~~i~liDTPGi 138 (141)
T cd01857 82 ENATIGLVGYPNVGKSSLINALVGKKKVSVSATPGKTKHFQTIF--LT-PTITLCDCPGL 138 (141)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCCCCEEEEE--EC-CCEEEEECCCC
T ss_conf 76268997788866999999985886687659994157668999--68-99999989886
No 66
>COG0536 Obg Predicted GTPase [General function prediction only]
Probab=99.59 E-value=2.2e-15 Score=126.57 Aligned_cols=143 Identities=24% Similarity=0.277 Sum_probs=105.7
Q ss_pred CEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCCEEECCCCCCC-CCEEEEEEECCHHCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 02431146631888999985520002345468721100012456-83589995081000241035666678889985030
Q gi|254780809|r 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299 (440)
Q Consensus 221 ~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTTRD~i~~~~~i-~g~~~~l~DTaGir~t~d~IE~~GI~ra~~~i~~a 299 (440)
-|.++|.||||||||+|+++..+- -|.++|.||.-..=..+.+ .+..|.+.|-|||-+-...=--+|+ +-+++++.+
T Consensus 161 DVGLVG~PNaGKSTlls~vS~AkP-KIadYpFTTL~PnLGvV~~~~~~sfv~ADIPGLIEGAs~G~GLG~-~FLrHIERt 238 (369)
T COG0536 161 DVGLVGLPNAGKSTLLSAVSAAKP-KIADYPFTTLVPNLGVVRVDGGESFVVADIPGLIEGASEGVGLGL-RFLRHIERT 238 (369)
T ss_pred CCCCCCCCCCCHHHHHHHHHHCCC-CCCCCCCCCCCCCCCEEEECCCCEEEEECCCCCCCCCCCCCCCCH-HHHHHHHHH
T ss_conf 114125898857989988860688-544886530247530799648860799347532356446887638-888788865
Q ss_pred CCEEECCCCCCHHH------H-----------HHHCCCCCCCCCCCCCCCCCCCH----------H---HHH-HHHHHHH
Q ss_conf 11020135898566------3-----------43128985322223334465420----------0---000-1333323
Q gi|254780809|r 300 DLILLLKEINSKKE------I-----------SFPKNIDFIFIGTKSDLYSTYTE----------E---YDH-LISSFTG 348 (440)
Q Consensus 300 Dlil~v~D~~~~~~------~-----------~~~~~~~~i~V~NK~Dl~~~~~~----------~---~~~-~ISaktg 348 (440)
-++++|+|.+..+. + ..+.++|.|+|+||+|+...... . ... +|||.|+
T Consensus 239 ~vL~hviD~s~~~~~dp~~~~~~i~~EL~~Y~~~L~~K~~ivv~NKiD~~~~~e~~~~~~~~l~~~~~~~~~~~ISa~t~ 318 (369)
T COG0536 239 RVLLHVIDLSPIDGRDPIEDYQTIRNELEKYSPKLAEKPRIVVLNKIDLPLDEEELEELKKALAEALGWEVFYLISALTR 318 (369)
T ss_pred HEEEEEEECCCCCCCCHHHHHHHHHHHHHHHCHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEHHCC
T ss_conf 15479985676567798999999999999857775358569998555776678999999999987408876315543102
Q ss_pred HHHHHHHHHHHHHHHHH
Q ss_conf 23589999999996322
Q gi|254780809|r 349 EGLEELINKIKSILSNK 365 (440)
Q Consensus 349 ~Gi~~L~~~I~~~l~~~ 365 (440)
+|++.|...+.+++...
T Consensus 319 ~g~~~L~~~~~~~l~~~ 335 (369)
T COG0536 319 EGLDELLRALAELLEET 335 (369)
T ss_pred CCHHHHHHHHHHHHHHH
T ss_conf 48799999999999975
No 67
>cd00878 Arf_Arl Arf (ADP-ribosylation factor)/Arl (Arf-like) small GTPases. Arf proteins are activators of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. Arfs are N-terminally myristoylated. Members of the Arf family are regulators of vesicle formation in intracellular traffic that interact reversibly with membranes of the secretory and endocytic compartments in a GTP-dependent manner. They depart from other small GTP-binding proteins by a unique structural device, interswitch toggle, that implements front-back communication from N-terminus to the nucleotide binding site. Arf-like (Arl) proteins are close relatives of the Arf, but only Arl1 has been shown to function in membrane traffic like the Arf proteins. Arl2 has an unrelated function in the folding of native tubulin, and Arl4 may function in the nucleus. Most other Arf family proteins are so far relatively poorly characterized. Thu
Probab=99.59 E-value=5.6e-15 Score=123.70 Aligned_cols=128 Identities=22% Similarity=0.300 Sum_probs=92.8
Q ss_pred CEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCCEEECCCCCCCCCEEEEEEECCHHCCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf 02431146631888999985520002345468721100012456835899950810002410356666788899850301
Q gi|254780809|r 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 (440)
Q Consensus 221 ~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTTRD~i~~~~~i~g~~~~l~DTaGir~t~d~IE~~GI~ra~~~i~~aD 300 (440)
||+++|.||||||||+|++.+.+-.- ..| |..+-...+.++++.+.+.||||-.... .........||
T Consensus 1 Ki~ilG~~~vGKTsll~~l~~~~~~~--~~p--Tig~~~~~i~~~~~~l~iwDt~G~~~~~--------~~~~~y~~~a~ 68 (158)
T cd00878 1 RILILGLDGAGKTTILYKLKLGEVVT--TIP--TIGFNVETVEYKNVSFTVWDVGGQDKIR--------PLWKHYYENTN 68 (158)
T ss_pred CEEEECCCCCCHHHHHHHHHCCCCCC--CCC--EECCCEEEEEECCEEEEEEECCCCCCCC--------HHHHHHHCCCC
T ss_conf 99999999998899999995399887--445--6074089998488999999889972214--------48998727687
Q ss_pred CEEECCCCCCHHHHH-------------HHCCCCCCCCCCCCCCCCCCCHH----------------HHHHHHHHHHHHH
Q ss_conf 102013589856634-------------31289853222233344654200----------------0001333323235
Q gi|254780809|r 301 LILLLKEINSKKEIS-------------FPKNIDFIFIGTKSDLYSTYTEE----------------YDHLISSFTGEGL 351 (440)
Q Consensus 301 lil~v~D~~~~~~~~-------------~~~~~~~i~V~NK~Dl~~~~~~~----------------~~~~ISaktg~Gi 351 (440)
.+++|+|.+++..+. ..+++|+++|.||+|+....... ..+.+||+||+|+
T Consensus 69 ~~i~V~D~t~~~s~~~~~~~~~~~~~~~~~~~~piliv~NK~Dl~~~~~~~ei~~~l~~~~~~~~~~~~~~~SAktg~gI 148 (158)
T cd00878 69 GIIFVVDSSDRERIEEAKEELHKLLNEEELKGVPLLIFANKQDLPGALSVSELIEKLGLEKILGRRWHIQPCSAVTGDGL 148 (158)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCH
T ss_conf 76899837988899999999999986605576538987605476657899999999858751079989999988879298
Q ss_pred HHHHHHHHH
Q ss_conf 899999999
Q gi|254780809|r 352 EELINKIKS 360 (440)
Q Consensus 352 ~~L~~~I~~ 360 (440)
++..+.|.+
T Consensus 149 ~e~f~~L~e 157 (158)
T cd00878 149 DEGLDWLLQ 157 (158)
T ss_pred HHHHHHHHC
T ss_conf 999999956
No 68
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=99.56 E-value=3.1e-15 Score=125.47 Aligned_cols=60 Identities=37% Similarity=0.469 Sum_probs=51.2
Q ss_pred HHCCCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCCEEECCCCCCCCCEEEEEEECCHHCC
Q ss_conf 202302431146631888999985520002345468721100012456835899950810002
Q gi|254780809|r 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279 (440)
Q Consensus 217 ~~g~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTTRD~i~~~~~i~g~~~~l~DTaGir~ 279 (440)
...++++++|.||||||||+|+|.|++++.|++.||+||..-. +.++. .+.|+||||+--
T Consensus 116 ~~~i~v~vVG~PNVGKSSlIN~L~~~k~~~v~~~PG~Tr~~q~--i~l~~-~i~llDtPGvl~ 175 (276)
T TIGR03596 116 NRPIRAMIVGIPNVGKSTLINRLAGKKVAKVGNRPGVTKGQQW--IKLSD-GLELLDTPGILW 175 (276)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHCCCEEEECCCCCCCCEEEE--EEECC-CEEEECCCCCCC
T ss_conf 7863899972798758999998736725877796542102589--99579-779966887457
No 69
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=99.55 E-value=2.3e-14 Score=119.42 Aligned_cols=131 Identities=24% Similarity=0.315 Sum_probs=96.2
Q ss_pred CEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCCEEECCCCCCCCC--EEEEEEECCHHCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 0243114663188899998552000234546872110001245683--58999508100024103566667888998503
Q gi|254780809|r 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG--YLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298 (440)
Q Consensus 221 ~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTTRD~i~~~~~i~g--~~~~l~DTaGir~t~d~IE~~GI~ra~~~i~~ 298 (440)
||+++|.++||||||+|+++..+- ..++.-|..|.....+.++| +.+.+.||||..+-.. ........
T Consensus 1 Ki~ivG~~~vGKTsli~r~~~~~f--~~~~~pTi~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~~--------~~~~~~~~ 70 (160)
T cd00876 1 KVVVLGAGGVGKSAITIQFVKGTF--VEEYDPTIEDSYRKTIVVDGETYTLDILDTAGQEEFSA--------MRDLYIRQ 70 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHHCCC--CCCCCCCEEEEEEEEEEECCEEEEEEEEECCCCHHHHH--------HHHHHHHH
T ss_conf 999999699679999999961959--98778830048999999766999999997999623557--------88999764
Q ss_pred HCCEEECCCCCCHHHHHH-------------HCCCCCCCCCCCCCCCCCCCH--H-----------HHHHHHHHHHHHHH
Q ss_conf 011020135898566343-------------128985322223334465420--0-----------00013333232358
Q gi|254780809|r 299 ADLILLLKEINSKKEISF-------------PKNIDFIFIGTKSDLYSTYTE--E-----------YDHLISSFTGEGLE 352 (440)
Q Consensus 299 aDlil~v~D~~~~~~~~~-------------~~~~~~i~V~NK~Dl~~~~~~--~-----------~~~~ISaktg~Gi~ 352 (440)
||.+++|+|.+++..+.. ....|+++|.||+||.....- . .-+.+|||+|.|++
T Consensus 71 a~~~ilvfd~~~~~Sf~~i~~~~~~i~~~~~~~~~piilvgnK~Dl~~~~~V~~~e~~~~a~~~~~~y~e~Sak~g~nV~ 150 (160)
T cd00876 71 GDGFILVYSITDRESFEEIKGYREQILRVKDDEDIPIVLVGNKCDLENERQVSKEEGKALAKEWGCPFIETSAKDNINID 150 (160)
T ss_pred CCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCHHCCCCCHHHHHHHHHHCCCEEEEECCCCCCCHH
T ss_conf 36899973289878999999999999997287886299999745622307899999999999849979998479894989
Q ss_pred HHHHHHHHH
Q ss_conf 999999999
Q gi|254780809|r 353 ELINKIKSI 361 (440)
Q Consensus 353 ~L~~~I~~~ 361 (440)
++.+.|.+.
T Consensus 151 e~F~~i~~~ 159 (160)
T cd00876 151 EVFKLLVRE 159 (160)
T ss_pred HHHHHHHHH
T ss_conf 999999972
No 70
>cd04178 Nucleostemin_like Nucleostemin-like. Nucleostemin (NS) is a nucleolar protein that functions as a regulator of cell growth and proliferation in stem cells and in several types of cancer cells, but is not expressed in the differentiated cells of most mammalian adult tissues. NS shuttles between the nucleolus and nucleoplasm bidirectionally at a rate that is fast and independent of cell type. Lowering GTP levels decreases the nucleolar retention of NS, and expression of NS is abruptly down-regulated during differentiation prior to terminal cell division. Found only in eukaryotes, NS consists of an N-terminal basic domain, a coiled-coil domain, a GTP-binding domain, an intermediate domain, and a C-terminal acidic domain. Experimental evidence indicates that NS uses its GTP-binding property as a molecular switch to control the transition between the nucleolus and nucleoplasm, and this process involves interaction between the basic, GTP-binding, and intermediate domains of the
Probab=99.55 E-value=3.3e-15 Score=125.27 Aligned_cols=69 Identities=29% Similarity=0.467 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCCEEECCCCCCCCCEEEEEEECCHH
Q ss_conf 333223455432023024311466318889999855200023454687211000124568358999508100
Q gi|254780809|r 206 HISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277 (440)
Q Consensus 206 ll~~~~~~~~l~~g~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTTRD~i~~~~~i~g~~~~l~DTaGi 277 (440)
.+..+.+.......++|.++|.||||||||+|+|.|++++-|++.||+||+..... ++. .+.|+||||+
T Consensus 104 ~~~~~~~~~~~~~~i~v~vvG~PNVGKSSlIN~L~~~k~~~v~~~PG~Tk~~q~i~--l~~-~i~L~DtPGv 172 (172)
T cd04178 104 LLKNYSRNKDIKTSITVGVVGFPNVGKSSLINSLKRSRACNVGATPGVTKSMQEVH--LDK-KVKLLDSPGI 172 (172)
T ss_pred HHHHHHHCCCCCCCEEEEEEECCCCCHHHHHHHHHCCCEEEECCCCCEEEEEEEEE--ECC-CEEEEECCCC
T ss_conf 99987552477665599998347742578998873474477659995476679999--589-9899969199
No 71
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=99.54 E-value=1.7e-14 Score=120.29 Aligned_cols=132 Identities=17% Similarity=0.204 Sum_probs=92.2
Q ss_pred CEEEECCCCCCHHHHHHHHHCCH---HCCCCCCCCCCEEECCCCCCCCCEEEEEEECCHHCCCCHHHHHHHHHHHHHHHH
Q ss_conf 02431146631888999985520---002345468721100012456835899950810002410356666788899850
Q gi|254780809|r 221 KIVILGHSNAGKSSLFNALAKKD---VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297 (440)
Q Consensus 221 ~v~i~G~pN~GKSSL~N~L~~~~---~aIVs~~~GTTRD~i~~~~~i~g~~~~l~DTaGir~t~d~IE~~GI~ra~~~i~ 297 (440)
.|+++|.+|||||||+|++.... .....+...+|-+.--..+.++++.+.+.||||-..-. ........
T Consensus 1 ~ivilG~~~~GKTsll~~l~~~~~~~~~~~~~~~~~Tvg~~~~~i~~~~~~l~iwD~~Gqe~~~--------~l~~~y~~ 72 (167)
T cd04160 1 SVLILGLDNAGKTTFLEQLKTLFSKYKGLPPSKITPTVGLNIGTIEVGNARLKFWDLGGQESLR--------SLWDKYYA 72 (167)
T ss_pred CEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEEECCEEEEEEECCCCHHHH--------HHHHHHCC
T ss_conf 9999999998888999988750367677765540353132689999899999999689878887--------89987428
Q ss_pred HHCCEEECCCCCCHHHHH-------------HHCCCCCCCCCCCCCCCCCCCHH------------------HHHHHHHH
Q ss_conf 301102013589856634-------------31289853222233344654200------------------00013333
Q gi|254780809|r 298 NADLILLLKEINSKKEIS-------------FPKNIDFIFIGTKSDLYSTYTEE------------------YDHLISSF 346 (440)
Q Consensus 298 ~aDlil~v~D~~~~~~~~-------------~~~~~~~i~V~NK~Dl~~~~~~~------------------~~~~ISak 346 (440)
.||.+++|+|.+++..+. ..++.|++++.||+|+.+..... ..+.+||+
T Consensus 73 ~a~~ii~VvD~sd~~~~~~~~~~l~~~~~~~~~~~~pili~~NK~Dl~~~~~~~ei~~~~~~~~~~~~~~~~~~~~~SAk 152 (167)
T cd04160 73 ECHAIIYVIDSTDRERFEESKSALEKVLRNEALEGVPLLILANKQDLPDALSVEEIKEVFQDKAEEIGRRDCLVLPVSAL 152 (167)
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECC
T ss_conf 98789999866867889999999999751102489629999706676657789999999999999854699899998878
Q ss_pred HHHHHHHHHHHHHH
Q ss_conf 23235899999999
Q gi|254780809|r 347 TGEGLEELINKIKS 360 (440)
Q Consensus 347 tg~Gi~~L~~~I~~ 360 (440)
||+|+++..+-|.+
T Consensus 153 tG~Gv~e~f~wL~~ 166 (167)
T cd04160 153 EGTGVREGIEWLVE 166 (167)
T ss_pred CCCCHHHHHHHHHC
T ss_conf 29498999999965
No 72
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=99.54 E-value=3.6e-14 Score=118.10 Aligned_cols=131 Identities=27% Similarity=0.381 Sum_probs=91.4
Q ss_pred CCEEEECCCCCCHHHHHHHHHCCHHCCCCCC-CCCCEEECCCCCCCCCEE--EEEEECCHHCCCCHHHHHHHHHHHHHHH
Q ss_conf 3024311466318889999855200023454-687211000124568358--9995081000241035666678889985
Q gi|254780809|r 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDI-PGTTRDVLTIDLDLEGYL--VKISDTAGIRETDDIVEKEGIKRTFLEV 296 (440)
Q Consensus 220 ~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~-~GTTRD~i~~~~~i~g~~--~~l~DTaGir~t~d~IE~~GI~ra~~~i 296 (440)
+||+++|.+|||||||+|+++..+- ..++ |....|+....+.++|.+ +.+.||||.-+- . .+ .....
T Consensus 1 ~Ki~vvG~~~vGKTsli~~~~~~~f--~~~~~~Tig~d~~~~~~~~~~~~~~l~iwDt~G~e~~----~--~l--~~~~~ 70 (159)
T cd00154 1 FKIVLIGDSGVGKTSLLLRFVDGKF--DENYKSTIGVDFKSKTIEIDGKTVKLQIWDTAGQERF----R--SI--TPSYY 70 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHHCCC--CCCCCCCCCEEEEEEEEEECCEEEEEEEEECCCCHHH----H--HH--HHHHH
T ss_conf 9899999699689999999970999--9984886664799999999999999999978982657----7--88--99997
Q ss_pred HHHCCEEECCCCCCHHHHHH------------HCCCCCCCCCCCCCCCCCCCHH-------------HHHHHHHHHHHHH
Q ss_conf 03011020135898566343------------1289853222233344654200-------------0001333323235
Q gi|254780809|r 297 ENADLILLLKEINSKKEISF------------PKNIDFIFIGTKSDLYSTYTEE-------------YDHLISSFTGEGL 351 (440)
Q Consensus 297 ~~aDlil~v~D~~~~~~~~~------------~~~~~~i~V~NK~Dl~~~~~~~-------------~~~~ISaktg~Gi 351 (440)
..||.+++|+|.+++..+.. ..+.|+++|.||+||.+..... .-+.+||++|.|+
T Consensus 71 ~~~d~~ilv~d~~~~~Sf~~~~~~~~~i~~~~~~~~~iilvgnK~DL~~~~~v~~~~~~~~a~~~~~~~~e~SAk~~~~i 150 (159)
T cd00154 71 RGAHGAILVYDITNRESFENLDKWLKELKEYAPENIPIILVGNKIDLEDQRQVSTEEAQQFAKENGLLFFETSAKTGENV 150 (159)
T ss_pred HHCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHCCCCCHHHHHHHHHHCCCEEEEECCCCCCCH
T ss_conf 54127567244898899999999999999868988826999974563011689999999999986997999876888198
Q ss_pred HHHHHHHHH
Q ss_conf 899999999
Q gi|254780809|r 352 EELINKIKS 360 (440)
Q Consensus 352 ~~L~~~I~~ 360 (440)
+++.+.|.+
T Consensus 151 ~~~F~~i~~ 159 (159)
T cd00154 151 EELFQSLAE 159 (159)
T ss_pred HHHHHHHHC
T ss_conf 999999869
No 73
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=99.54 E-value=3e-14 Score=118.63 Aligned_cols=128 Identities=16% Similarity=0.204 Sum_probs=90.7
Q ss_pred CEEEECCCCCCHHHHHHHHHCCHHCC-CCCCCCCCEEECCCCCCCCCEEEEEEECCHHCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 02431146631888999985520002-34546872110001245683589995081000241035666678889985030
Q gi|254780809|r 221 KIVILGHSNAGKSSLFNALAKKDVAI-VTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299 (440)
Q Consensus 221 ~v~i~G~pN~GKSSL~N~L~~~~~aI-Vs~~~GTTRD~i~~~~~i~g~~~~l~DTaGir~t~d~IE~~GI~ra~~~i~~a 299 (440)
.|+++|.+|||||||+|++++.+-.- +.+.-|.+ -..+..+++.+.+.||||-..-. .........|
T Consensus 1 ~I~llG~~~~GKTsll~~~~~~~f~~~~~pTig~~----~~~i~~~~~~l~iwDt~G~e~~~--------~l~~~y~~~~ 68 (159)
T cd04159 1 EITLVGLQNSGKTTLVNVIAGGQFSEDTIPTVGFN----MRKVTKGNVTLKVWDLGGQPRFR--------SMWERYCRGV 68 (159)
T ss_pred CEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCEE----EEEEEECCEEEEEEECCCHHHHH--------HHHHHHHCCC
T ss_conf 98999999986999999997599988616732505----89999899999999798358779--------9999874686
Q ss_pred CCEEECCCCCCHHHHH-------------HHCCCCCCCCCCCCCCCCCCCHH----------------HHHHHHHHHHHH
Q ss_conf 1102013589856634-------------31289853222233344654200----------------000133332323
Q gi|254780809|r 300 DLILLLKEINSKKEIS-------------FPKNIDFIFIGTKSDLYSTYTEE----------------YDHLISSFTGEG 350 (440)
Q Consensus 300 Dlil~v~D~~~~~~~~-------------~~~~~~~i~V~NK~Dl~~~~~~~----------------~~~~ISaktg~G 350 (440)
|.+++|+|.+++..+. ...+.|+++|.||+||....... ..+.+|||+|.|
T Consensus 69 ~~ii~V~D~sd~~s~~~~~~~l~~~~~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~~~~~~~~~~~~~~~~~SAktg~g 148 (159)
T cd04159 69 NAIVYVVDAADRTALEAAKNELHDLLEKPSLEGIPLLVLGNKNDLPGALSVDELIEQMNLKSITDREVSCYSISCKEKTN 148 (159)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCC
T ss_conf 36875157787889999999999998544348982898883567643478999999999998734998799997968969
Q ss_pred HHHHHHHHHH
Q ss_conf 5899999999
Q gi|254780809|r 351 LEELINKIKS 360 (440)
Q Consensus 351 i~~L~~~I~~ 360 (440)
++++.+.|.+
T Consensus 149 I~e~f~wL~~ 158 (159)
T cd04159 149 IDIVLDWLIK 158 (159)
T ss_pred HHHHHHHHHC
T ss_conf 8999999965
No 74
>PTZ00133 ADP-ribosylation factor; Provisional
Probab=99.53 E-value=4.7e-14 Score=117.33 Aligned_cols=137 Identities=19% Similarity=0.267 Sum_probs=99.0
Q ss_pred HHCCCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCCEEECCCCCCCCCEEEEEEECCHHCCCCHHHHHHHHHHHHHHH
Q ss_conf 20230243114663188899998552000234546872110001245683589995081000241035666678889985
Q gi|254780809|r 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296 (440)
Q Consensus 217 ~~g~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTTRD~i~~~~~i~g~~~~l~DTaGir~t~d~IE~~GI~ra~~~i 296 (440)
+..++|+++|.+|||||||++++...+.. +..| |...-...+..+++.+.+.||||-..-. .......
T Consensus 15 kk~~kililGl~~sGKTsil~~l~~~~~~--~~~p--Tvg~~~~~~~~~~~~l~iwD~~Gqe~~r--------~lw~~yy 82 (182)
T PTZ00133 15 KKEVRILMVGLDAAGKTTILYKLKLGEVV--TTIP--TIGFNVETVEYKNLKFTMWDVGGQDKLR--------PLWRHYY 82 (182)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHCCCCC--CCCC--CCCCCEEEEEECCEEEEEEECCCCCCCC--------HHHHHCC
T ss_conf 87479999967998899999999629977--7378--6884569999788899999899984547--------4787605
Q ss_pred HHHCCEEECCCCCCHHHHH-------------HHCCCCCCCCCCCCCCCCCCCHH----------------HHHHHHHHH
Q ss_conf 0301102013589856634-------------31289853222233344654200----------------000133332
Q gi|254780809|r 297 ENADLILLLKEINSKKEIS-------------FPKNIDFIFIGTKSDLYSTYTEE----------------YDHLISSFT 347 (440)
Q Consensus 297 ~~aDlil~v~D~~~~~~~~-------------~~~~~~~i~V~NK~Dl~~~~~~~----------------~~~~ISakt 347 (440)
..||.++||+|.++...+. ...+.|++++.||+|+.+..... ....+||+|
T Consensus 83 ~~~~giI~VvD~sd~~~~~~~~~~l~~~l~~~~~~~~piLi~~NK~Dl~~a~~~~ei~~~l~l~~~~~~~~~i~~~SA~t 162 (182)
T PTZ00133 83 QNTNGIIFVVDSNDRERIGDARQELEKMLAEDELRNAVLLVFANKQDLPNAMSTTEVTEKLGLHSVRQRNWYIQGCCATT 162 (182)
T ss_pred CCCCEEEEEEECCCHHHHHHHHHHHHHHHCCHHHCCCEEEEEECCCCCCCCCCHHHHHHHHCHHHHHCCCCEEEEEECCC
T ss_conf 67644999996678789999999999997144224885999970668778889999999969555615995899825758
Q ss_pred HHHHHHHHHHHHHHHHHH
Q ss_conf 323589999999996322
Q gi|254780809|r 348 GEGLEELINKIKSILSNK 365 (440)
Q Consensus 348 g~Gi~~L~~~I~~~l~~~ 365 (440)
|+|+++..+-|.+.+...
T Consensus 163 G~Gi~e~f~wL~~~ikk~ 180 (182)
T PTZ00133 163 AQGLYEGLDWLSANIKKS 180 (182)
T ss_pred CCCHHHHHHHHHHHHHHH
T ss_conf 949899999999999986
No 75
>PRK09563 rbgA ribosomal biogenesis GTPase; Reviewed
Probab=99.53 E-value=1.5e-14 Score=120.70 Aligned_cols=61 Identities=33% Similarity=0.419 Sum_probs=51.8
Q ss_pred HHHCCCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCCEEECCCCCCCCCEEEEEEECCHHCC
Q ss_conf 3202302431146631888999985520002345468721100012456835899950810002
Q gi|254780809|r 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279 (440)
Q Consensus 216 l~~g~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTTRD~i~~~~~i~g~~~~l~DTaGir~ 279 (440)
....++|+++|.||||||||+|+|.|++++.|++.||+||..- .+.++. .+.|+||||+--
T Consensus 118 ~~~~i~v~vvG~PNVGKSSlIN~L~~~k~~~v~~~PG~Tk~~q--~v~l~~-~i~L~DtPGvl~ 178 (282)
T PRK09563 118 RPRAIRAMIIGIPNVGKSTLINRLAGKKIAKTGNRPGVTKSQQ--WIKLGK-GLELLDTPGILW 178 (282)
T ss_pred CCCCEEEEEEECCCCCHHHHHHHHHCCCEEEECCCCCCEEEEE--EEEECC-CEEEECCCCCCC
T ss_conf 6786389997069776799999874770587679654100258--999579-889966887457
No 76
>cd04156 ARLTS1 ARLTS1 subfamily. ARLTS1 (Arf-like tumor suppressor gene 1), also known as Arl11, is a member of the Arf family of small GTPases that is believed to play a major role in apoptotic signaling. ARLTS1 is widely expressed and functions as a tumor suppressor gene in several human cancers. ARLTS1 is a low-penetrance suppressor that accounts for a small percentage of familial melanoma or familial chronic lymphocytic leukemia (CLL). ARLTS1 inactivation seems to occur most frequently through biallelic down-regulation by hypermethylation of the promoter. In breast cancer, ARLTS1 alterations were typically a combination of a hypomorphic polymorphism plus loss of heterozygosity. In a case of thyroid adenoma, ARLTS1 alterations were polymorphism plus promoter hypermethylation. The nonsense polymorphism Trp149Stop occurs with significantly greater frequency in familial cancer cases than in sporadic cancer cases, and the Cys148Arg polymorphism is associated with an increase in h
Probab=99.52 E-value=4.8e-14 Score=117.28 Aligned_cols=128 Identities=26% Similarity=0.372 Sum_probs=89.3
Q ss_pred CEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCCEEECCCCCCCCC-EEEEEEECCHHCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 0243114663188899998552000234546872110001245683-589995081000241035666678889985030
Q gi|254780809|r 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG-YLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299 (440)
Q Consensus 221 ~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTTRD~i~~~~~i~g-~~~~l~DTaGir~t~d~IE~~GI~ra~~~i~~a 299 (440)
||+++|.+|||||||++++...+-.-..+..|.. -..+.+++ +.+.+.||||-.... .........|
T Consensus 1 KivilG~~~~GKTsil~r~~~~~~~~~~pTig~~----~~~~~~~~~~~l~iwD~~G~e~~~--------~~~~~y~~~a 68 (160)
T cd04156 1 QVLLLGLDSAGKSTLLYKLKHAELVTTIPTVGFN----VEMLQLEKHLSLTVWDVGGQEKMR--------TVWKCYLENT 68 (160)
T ss_pred CEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCEE----EEEEEECCEEEEEEEECCCCCCCC--------HHHHHHHCCC
T ss_conf 9999999999999999999569877757761503----899998998999999789862474--------1588774567
Q ss_pred CCEEECCCCCCHHHHH-------------HHCCCCCCCCCCCCCCCCCCCHH-----------------HHHHHHHHHHH
Q ss_conf 1102013589856634-------------31289853222233344654200-----------------00013333232
Q gi|254780809|r 300 DLILLLKEINSKKEIS-------------FPKNIDFIFIGTKSDLYSTYTEE-----------------YDHLISSFTGE 349 (440)
Q Consensus 300 Dlil~v~D~~~~~~~~-------------~~~~~~~i~V~NK~Dl~~~~~~~-----------------~~~~ISaktg~ 349 (440)
|.+++|+|.+++..+. ..++.|++++.||+|+....... ....+||+||+
T Consensus 69 ~~iI~V~D~td~~~~~~~~~~~~~~l~~~~~~~~pili~~NK~Dl~~~~~~~ei~~~l~~~~~~~~~~~~i~~~SAktGe 148 (160)
T cd04156 69 DGLVYVVDSSDEARLDESQKELKHILKNEHIKGVPVVLLANKQDLPGALTAEEITRRFKLKKYCSDRDWYVQPCSAVTGE 148 (160)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCC
T ss_conf 78999985686788787999999998663537874999998633656679999999986999985399999986688495
Q ss_pred HHHHHHHHHHH
Q ss_conf 35899999999
Q gi|254780809|r 350 GLEELINKIKS 360 (440)
Q Consensus 350 Gi~~L~~~I~~ 360 (440)
|++++.+.|..
T Consensus 149 gi~e~f~~la~ 159 (160)
T cd04156 149 GLAEAFRKLAS 159 (160)
T ss_pred CHHHHHHHHHC
T ss_conf 99999999857
No 77
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.52 E-value=5.2e-14 Score=117.02 Aligned_cols=135 Identities=19% Similarity=0.254 Sum_probs=97.1
Q ss_pred HHCCCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCCEEECCCCCCCCCEEEEEEECCHHCCCCHHHHHHHHHHHHHHH
Q ss_conf 20230243114663188899998552000234546872110001245683589995081000241035666678889985
Q gi|254780809|r 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296 (440)
Q Consensus 217 ~~g~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTTRD~i~~~~~i~g~~~~l~DTaGir~t~d~IE~~GI~ra~~~i 296 (440)
++-++|+++|.+|||||||++++...+. .+.+| |...-...+..+++.+.+.||||--.-. .......
T Consensus 11 kk~~kililG~~~~GKTsil~~l~~~~~--~~~~p--Tvg~~~~~~~~~~~~l~iwD~~Gqe~~r--------~l~~~Yy 78 (175)
T smart00177 11 NKEMRILMVGLDAAGKTTILYKLKLGES--VTTIP--TIGFNVETVTYKNISFTVWDVGGQDKIR--------PLWRHYY 78 (175)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHCCCC--CCCCC--CCCCEEEEEEECCEEEEEEECCCCCCCC--------HHHHHHC
T ss_conf 8889999998899998999999965997--77579--7881079999898999999899985455--------3677755
Q ss_pred HHHCCEEECCCCCCHHHHH-------------HHCCCCCCCCCCCCCCCCCCCHH----------------HHHHHHHHH
Q ss_conf 0301102013589856634-------------31289853222233344654200----------------000133332
Q gi|254780809|r 297 ENADLILLLKEINSKKEIS-------------FPKNIDFIFIGTKSDLYSTYTEE----------------YDHLISSFT 347 (440)
Q Consensus 297 ~~aDlil~v~D~~~~~~~~-------------~~~~~~~i~V~NK~Dl~~~~~~~----------------~~~~ISakt 347 (440)
+.||.++||+|.++..... ...+.|++++.||+|+.+..... ....+||+|
T Consensus 79 ~~a~~iIfVvD~sd~~~~~~~~~~l~~~l~~~~~~~~piLil~NK~Dl~~~~~~~ei~~~l~l~~~~~~~~~i~~~SA~t 158 (175)
T smart00177 79 TNTQGLIFVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDAMKAAEITEKLGLHSIRDRNWYIQPTCATS 158 (175)
T ss_pred CCCCEEEEEEECCCHHHHHHHHHHHHHHHCCHHHCCCEEEEEEECCCCCCCCCHHHHHHHHCHHHHCCCCEEEEEEECCC
T ss_conf 77618999986687789999999999996315316986999984566767889999999968665407975999826878
Q ss_pred HHHHHHHHHHHHHHHH
Q ss_conf 3235899999999963
Q gi|254780809|r 348 GEGLEELINKIKSILS 363 (440)
Q Consensus 348 g~Gi~~L~~~I~~~l~ 363 (440)
|+||++..+-|.+.+.
T Consensus 159 G~GI~e~f~wL~~~ik 174 (175)
T smart00177 159 GDGLYEGLTWLSNNLK 174 (175)
T ss_pred CCCHHHHHHHHHHHHC
T ss_conf 9698999999999844
No 78
>cd04139 RalA_RalB RalA/RalB subfamily. The Ral (Ras-like) subfamily consists of the highly homologous RalA and RalB. Ral proteins are believed to play a crucial role in tumorigenesis, metastasis, endocytosis, and actin cytoskeleton dynamics. Despite their high sequence similarity (80% sequence identity), nonoverlapping and opposing functions have been assigned to RalA and RalBs in tumor migration. In human bladder and prostate cancer cells, RalB promotes migration while RalA inhibits it. A Ral-specific set of GEFs has been identified that are activated by Ras binding. This RalGEF activity is enhanced by Ras binding to another of its target proteins, phosphatidylinositol 3-kinase (PI3K). Ral effectors include RLIP76/RalBP1, a Rac/cdc42 GAP, and the exocyst (Sec6/8) complex, a heterooctomeric protein complex that is involved in tethering vesicles to specific sites on the plasma membrane prior to exocytosis. In rat kidney cells, RalB is required for functional assembly of the exo
Probab=99.52 E-value=7.1e-14 Score=116.06 Aligned_cols=134 Identities=22% Similarity=0.268 Sum_probs=95.1
Q ss_pred CCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCCEEECCCCCCCCC--EEEEEEECCHHCCCCHHHHHHHHHHHHHHHH
Q ss_conf 30243114663188899998552000234546872110001245683--5899950810002410356666788899850
Q gi|254780809|r 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG--YLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297 (440)
Q Consensus 220 ~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTTRD~i~~~~~i~g--~~~~l~DTaGir~t~d~IE~~GI~ra~~~i~ 297 (440)
+||+++|.++||||||++++++.+= ..++.-|..|.....+.++| +.+.+.||||-.+-. ........
T Consensus 1 fKvvlvGd~~VGKTsli~r~~~~~F--~~~y~pTi~~~~~~~~~~~~~~v~l~iwDtaG~e~~~--------~l~~~~~~ 70 (164)
T cd04139 1 YKVIVVGAGGVGKSALTLQFMYDEF--VEDYEPTKADSYRKKVVLDGEDVQLNILDTAGQEDYA--------AIRDNYHR 70 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHHCCC--CCCCCCCCCCEEEEEEEECCEEEEEEEEECCCCHHHH--------HHHHHHHH
T ss_conf 9799999999889999999971989--8774885441689999999999999999898866248--------89999886
Q ss_pred HHCCEEECCCCCCHHHHHH-------------HCCCCCCCCCCCCCCCCCCCHH-------------HHHHHHHHHHHHH
Q ss_conf 3011020135898566343-------------1289853222233344654200-------------0001333323235
Q gi|254780809|r 298 NADLILLLKEINSKKEISF-------------PKNIDFIFIGTKSDLYSTYTEE-------------YDHLISSFTGEGL 351 (440)
Q Consensus 298 ~aDlil~v~D~~~~~~~~~-------------~~~~~~i~V~NK~Dl~~~~~~~-------------~~~~ISaktg~Gi 351 (440)
.||.+++|+|.+++..... ....|+++|.||+||.+..... .-+.+||++|.|+
T Consensus 71 ~a~~~ilvydvt~~~Sf~~~~~~~~~~~~~~~~~~~piilVgNK~DL~~~r~v~~~e~~~~a~~~~~~~~E~SAk~g~nV 150 (164)
T cd04139 71 SGEGFLLVFSITDMESFTATAEFREQILRVKDDDNVPLLLVGNKCDLEDKRQVSSEEAANLARQWGVPYVETSAKTRQNV 150 (164)
T ss_pred HCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEHHHHHCCCCCHHHHHHHHHHCCCEEEEECCCCCCCH
T ss_conf 37688999977977889999999999998608788636987330323341778999999999983998999826879088
Q ss_pred HHHHHHHHHHHH
Q ss_conf 899999999963
Q gi|254780809|r 352 EELINKIKSILS 363 (440)
Q Consensus 352 ~~L~~~I~~~l~ 363 (440)
+++.+.|.+.+.
T Consensus 151 ~~~F~~l~~~i~ 162 (164)
T cd04139 151 EKAFYDLVREIR 162 (164)
T ss_pred HHHHHHHHHHHH
T ss_conf 999999999997
No 79
>cd04153 Arl5_Arl8 Arl5/Arl8 subfamily. Arl5 (Arf-like 5) and Arl8, like Arl4 and Arl7, are localized to the nucleus and nucleolus. Arl5 is developmentally regulated during embryogenesis in mice. Human Arl5 interacts with the heterochromatin protein 1-alpha (HP1alpha), a nonhistone chromosomal protein that is associated with heterochromatin and telomeres, and prevents telomere fusion. Arl5 may also play a role in embryonic nuclear dynamics and/or signaling cascades. Arl8 was identified from a fetal cartilage cDNA library. It is found in brain, heart, lung, cartilage, and kidney. No function has been assigned for Arl8 to date.
Probab=99.51 E-value=5e-14 Score=117.11 Aligned_cols=132 Identities=21% Similarity=0.296 Sum_probs=95.9
Q ss_pred HHCCCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCCEEECCCCCCCCCEEEEEEECCHHCCCCHHHHHHHHHHHHHHH
Q ss_conf 20230243114663188899998552000234546872110001245683589995081000241035666678889985
Q gi|254780809|r 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296 (440)
Q Consensus 217 ~~g~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTTRD~i~~~~~i~g~~~~l~DTaGir~t~d~IE~~GI~ra~~~i 296 (440)
+.-++|+++|.+|||||||+++|...+..-+.+..|..- ..+.++++.+.+.||||-..-. .......
T Consensus 13 ~k~~KililG~~~sGKTsil~~l~~~~~~~~~pT~G~~~----~~i~~~~~~~~iwD~~G~e~~~--------~~~~~y~ 80 (174)
T cd04153 13 RKEYKVIIVGLDNAGKTTILYQFLLGEVVHTSPTIGSNV----EEIVYKNIRFLMWDIGGQESLR--------SSWNTYY 80 (174)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCE----EEEEECCEEEEEEECCCCCCCC--------CHHHHHH
T ss_conf 977999999899998899999997399277167236046----9999788899999899986566--------2267770
Q ss_pred HHHCCEEECCCCCCHHHHH-------------HHCCCCCCCCCCCCCCCCCCCHH----------------HHHHHHHHH
Q ss_conf 0301102013589856634-------------31289853222233344654200----------------000133332
Q gi|254780809|r 297 ENADLILLLKEINSKKEIS-------------FPKNIDFIFIGTKSDLYSTYTEE----------------YDHLISSFT 347 (440)
Q Consensus 297 ~~aDlil~v~D~~~~~~~~-------------~~~~~~~i~V~NK~Dl~~~~~~~----------------~~~~ISakt 347 (440)
..||.+++|+|.++..... ...+.|++++.||+|+....... ....+||+|
T Consensus 81 ~~a~~ii~VvD~sd~~~~~~~~~~l~~~l~~~~~~~~pili~~NK~Dl~~~~~~~ei~~~l~l~~~~~~~~~~~~~SAkt 160 (174)
T cd04153 81 TNTDAVILVIDSTDRERLPLTKEELYKMLAHEDLRKAVLLVLANKQDLKGAMTPAEISESLGLTSIRDHTWHIQGCCALT 160 (174)
T ss_pred CCCCEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCC
T ss_conf 57753799997678889999999999997261016982899995555655789999999974777635980999966858
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 3235899999999
Q gi|254780809|r 348 GEGLEELINKIKS 360 (440)
Q Consensus 348 g~Gi~~L~~~I~~ 360 (440)
|+|+++..+-|.+
T Consensus 161 G~Gv~e~f~wLa~ 173 (174)
T cd04153 161 GEGLPEGLDWIAS 173 (174)
T ss_pred CCCHHHHHHHHHC
T ss_conf 9198999999866
No 80
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=99.51 E-value=1.1e-13 Score=114.79 Aligned_cols=135 Identities=22% Similarity=0.300 Sum_probs=96.9
Q ss_pred CCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCCEEECCCCCCCCCEE--EEEEECCHHCCCCHHHHHHHHHHHHHHHH
Q ss_conf 3024311466318889999855200023454687211000124568358--99950810002410356666788899850
Q gi|254780809|r 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL--VKISDTAGIRETDDIVEKEGIKRTFLEVE 297 (440)
Q Consensus 220 ~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTTRD~i~~~~~i~g~~--~~l~DTaGir~t~d~IE~~GI~ra~~~i~ 297 (440)
+||+++|.|+||||||+++++...- ..++.-|..|.....+.++|.. +.+.||||-.+-. ........
T Consensus 1 fKiv~vGd~~vGKTsli~r~~~~~f--~~~y~~Ti~~~~~k~i~~~~~~~~l~iwDt~G~e~~~--------~~~~~~~~ 70 (164)
T smart00173 1 YKLVVLGSGGVGKSALTIQFVQGHF--VDDYDPTIEDSYRKQIEIDGEVCLLDILDTAGQEEFS--------AMRDQYMR 70 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHHCCC--CCCCCCCEEEEEEEEEEECCEEEEEEEEECCCCCCHH--------HHHHHHCC
T ss_conf 9899999999789999999972979--9877881367899999999999999999899971035--------67777537
Q ss_pred HHCCEEECCCCCCHHHHHH-------------HCCCCCCCCCCCCCCCCCCCHH-------------HHHHHHHHHHHHH
Q ss_conf 3011020135898566343-------------1289853222233344654200-------------0001333323235
Q gi|254780809|r 298 NADLILLLKEINSKKEISF-------------PKNIDFIFIGTKSDLYSTYTEE-------------YDHLISSFTGEGL 351 (440)
Q Consensus 298 ~aDlil~v~D~~~~~~~~~-------------~~~~~~i~V~NK~Dl~~~~~~~-------------~~~~ISaktg~Gi 351 (440)
.||.+++|+|.+++..+.. ..+.|+++|.||+||.+...-. .-+.+||++|.|+
T Consensus 71 ~a~~~ilvydi~~~~Sf~~~~~~~~~i~~~~~~~~~piilvgnK~DL~~~r~V~~~e~~~~a~~~~~~~~E~SAk~g~nV 150 (164)
T smart00173 71 TGEGFLLVYSITDRQSFEEIKKFREQILRVKDRDDVPIVLVGNKCDLESERVVSTEEGKELARQWGCPFLETSAKERVNV 150 (164)
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCHHCCCCCHHHHHHHHHHCCCEEEEECCCCCCCH
T ss_conf 98779998307988999999999999998618888866877753463011789999999999983998999858988178
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 8999999999632
Q gi|254780809|r 352 EELINKIKSILSN 364 (440)
Q Consensus 352 ~~L~~~I~~~l~~ 364 (440)
+++.+.+.+.+.+
T Consensus 151 ~~~F~~l~~~i~k 163 (164)
T smart00173 151 DEAFYDLVREIRK 163 (164)
T ss_pred HHHHHHHHHHHHC
T ss_conf 9999999999960
No 81
>cd04152 Arl4_Arl7 Arl4/Arl7 subfamily. Arl4 (Arf-like 4) is highly expressed in testicular germ cells, and is found in the nucleus and nucleolus. In mice, Arl4 is developmentally expressed during embryogenesis, and a role in somite formation and central nervous system differentiation has been proposed. Arl7 has been identified as the only Arf/Arl protein to be induced by agonists of liver X-receptor and retinoid X-receptor and by cholesterol loading in human macrophages. Arl7 is proposed to play a role in transport between a perinuclear compartment and the plasma membrane, apparently linked to the ABCA1-mediated cholesterol secretion pathway. Older literature suggests that Arl6 is a part of the Arl4/Arl7 subfamily, but analyses based on more recent sequence data place Arl6 in its own subfamily.
Probab=99.50 E-value=1.4e-13 Score=114.10 Aligned_cols=138 Identities=17% Similarity=0.269 Sum_probs=92.4
Q ss_pred HCCCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCCEEECCCCC---CCCCEEEEEEECCHHCCCCHHHHHHHHHHHHH
Q ss_conf 023024311466318889999855200023454687211000124---56835899950810002410356666788899
Q gi|254780809|r 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL---DLEGYLVKISDTAGIRETDDIVEKEGIKRTFL 294 (440)
Q Consensus 218 ~g~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTTRD~i~~~~---~i~g~~~~l~DTaGir~t~d~IE~~GI~ra~~ 294 (440)
..++|+++|.+|||||||++++...+-. ...|..-=+.-...+ .-.++.+.+.||||--.-. .....
T Consensus 2 ~~~kIvilG~~~~GKTsil~r~~~~~f~--~~~pTiG~~~~~~~~~~~~~~~v~l~iwDtaGqe~~r--------~l~~~ 71 (183)
T cd04152 2 QSLHIVMLGLDSAGKTTVLYRLKFNEFV--NTVPTKGFNTEKIKVSLGNSKGITFHFWDVGGQEKLR--------PLWKS 71 (183)
T ss_pred CEEEEEEECCCCCCHHHHHHHHHCCCCC--CCCCCCCEEEEEEEEECCCCCEEEEEEEECCCCCCCC--------EEHHH
T ss_conf 6799999999999889999999649867--7687035578999996167866799999789873451--------00876
Q ss_pred HHHHHCCEEECCCCCCHHHHH-------------HHCCCCCCCCCCCCCCCCCCCHH-----------------HHHHHH
Q ss_conf 850301102013589856634-------------31289853222233344654200-----------------000133
Q gi|254780809|r 295 EVENADLILLLKEINSKKEIS-------------FPKNIDFIFIGTKSDLYSTYTEE-----------------YDHLIS 344 (440)
Q Consensus 295 ~i~~aDlil~v~D~~~~~~~~-------------~~~~~~~i~V~NK~Dl~~~~~~~-----------------~~~~IS 344 (440)
....||.+++|+|.++...+. ...+.|+++|.||+||.+..... .....|
T Consensus 72 Y~r~a~g~i~V~D~td~~~~~~~~~~l~~~~~~~~~~~~piliv~NK~Dl~~~~~~~ei~~~l~l~~~~~~~~~~i~~tS 151 (183)
T cd04152 72 YTRCTDGIVFVVDSVDVERMEEAKTELHKITRFSENQGVPVLVLANKQDLPNALSVSEVEKLLALHELSASTPWHVQPAC 151 (183)
T ss_pred HHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEE
T ss_conf 74678678999967768899999999999973212379629999866777668788999999719998666998999727
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q ss_conf 332323589999999996322
Q gi|254780809|r 345 SFTGEGLEELINKIKSILSNK 365 (440)
Q Consensus 345 aktg~Gi~~L~~~I~~~l~~~ 365 (440)
|+||+||++..+.|.+.+...
T Consensus 152 A~tG~gI~e~f~~L~~~i~~r 172 (183)
T cd04152 152 AIIGEGLQEGLEKLYEMILKR 172 (183)
T ss_pred CCCCCCHHHHHHHHHHHHHHH
T ss_conf 997969899999999999999
No 82
>cd04112 Rab26 Rab26 subfamily. First identified in rat pancreatic acinar cells, Rab26 is believed to play a role in recruiting mature granules to the plasma membrane upon beta-adrenergic stimulation. Rab26 belongs to the Rab functional group III, which are considered key regulators of intracellular vesicle transport during exocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.50 E-value=1.8e-13 Score=113.25 Aligned_cols=137 Identities=22% Similarity=0.303 Sum_probs=95.2
Q ss_pred CCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCC-EEECCCCCCCCC--EEEEEEECCHHCCCCHHHHHHHHHHHHHHH
Q ss_conf 30243114663188899998552000234546872-110001245683--589995081000241035666678889985
Q gi|254780809|r 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT-RDVLTIDLDLEG--YLVKISDTAGIRETDDIVEKEGIKRTFLEV 296 (440)
Q Consensus 220 ~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTT-RD~i~~~~~i~g--~~~~l~DTaGir~t~d~IE~~GI~ra~~~i 296 (440)
++|+++|.++||||||+++++...- +..++.-|. .|+....+.++| +.+.+.||||-..-.. .+....
T Consensus 1 ~KIv~vGd~~VGKTsli~r~~~~~f-~~~~~~~Ti~~~~~~k~~~~~~~~v~l~iwDtaG~e~~~~--------l~~~~~ 71 (191)
T cd04112 1 FKVMLLGDSGVGKTCLLVRFKDGAF-LNGNFIATVGIDFRNKVVTVDGVKVKLQIWDTAGQERFRS--------VTHAYY 71 (191)
T ss_pred CEEEEECCCCCCHHHHHHHHHHCCC-CCCCCCCCCCEEEEEEEEEECCEEEEEEEEECCCCCCCCC--------CHHHHH
T ss_conf 9899999499879999999995978-9998677652477999999999999999997998633464--------647771
Q ss_pred HHHCCEEECCCCCCHHHHHH------------HCCCCCCCCCCCCCCCCCCCHH-------------HHHHHHHHHHHHH
Q ss_conf 03011020135898566343------------1289853222233344654200-------------0001333323235
Q gi|254780809|r 297 ENADLILLLKEINSKKEISF------------PKNIDFIFIGTKSDLYSTYTEE-------------YDHLISSFTGEGL 351 (440)
Q Consensus 297 ~~aDlil~v~D~~~~~~~~~------------~~~~~~i~V~NK~Dl~~~~~~~-------------~~~~ISaktg~Gi 351 (440)
..||.+++|+|.+++..+.. ..+.|+++|.||+||....... ..+.+|||+|.||
T Consensus 72 ~~a~~~ilvydit~~~Sf~~l~~w~~~i~~~~~~~~~iilVGNK~DL~~~r~V~~~e~~~~a~~~~~~f~EtSAkt~~nI 151 (191)
T cd04112 72 RDAHALLLLYDITNKASFDNIRAWLTEIKEYAQEDVVIMLLGNKADMSGERVVKREDGERLAKEYGVPFMETSAKTGLNV 151 (191)
T ss_pred HCCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCH
T ss_conf 17777899972798899999999999999866678538986124655302679999999999982997999854898097
Q ss_pred HHHHHHHHHHHHHH
Q ss_conf 89999999996322
Q gi|254780809|r 352 EELINKIKSILSNK 365 (440)
Q Consensus 352 ~~L~~~I~~~l~~~ 365 (440)
+++.+.|.+.+...
T Consensus 152 ~e~F~~i~~~i~~~ 165 (191)
T cd04112 152 ELAFTAVAKELKHR 165 (191)
T ss_pred HHHHHHHHHHHHHH
T ss_conf 99999999999874
No 83
>cd01892 Miro2 Miro2 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the putative GTPase domain in the C terminus of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.49 E-value=1.5e-13 Score=113.84 Aligned_cols=139 Identities=20% Similarity=0.259 Sum_probs=100.2
Q ss_pred HHCCCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCCEEECCCCCCCCCEE--EEEEECCHHCCCCHHHHHHHHHHHHH
Q ss_conf 2023024311466318889999855200023454687211000124568358--99950810002410356666788899
Q gi|254780809|r 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL--VKISDTAGIRETDDIVEKEGIKRTFL 294 (440)
Q Consensus 217 ~~g~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTTRD~i~~~~~i~g~~--~~l~DTaGir~t~d~IE~~GI~ra~~ 294 (440)
|+-+++.++|.++||||||++++++..-..-+-.|....|+....+.++|.. +.|.||||...- -..+..
T Consensus 2 r~vfk~~VlG~~~VGKTsLi~rf~~~~f~~~~y~~Ti~~~~~~k~v~v~g~~~~L~i~Dt~g~e~~--------~~l~~~ 73 (169)
T cd01892 2 RNVFLCFVLGAKGSGKSALLRAFLGRSFSLNAYSPTIKPRYAVNTVEVYGQEKYLILREVGEDEVA--------ILLNDA 73 (169)
T ss_pred CEEEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEEEECCEEEEEEEEECCCCHHH--------HHHHHH
T ss_conf 508999999999988999999996499986665675466189999998999999999855653235--------566588
Q ss_pred HHHHHCCEEECCCCCCHHHHHH----------HCCCCCCCCCCCCCCCCCCCHH--------------HHHHHHHHHHHH
Q ss_conf 8503011020135898566343----------1289853222233344654200--------------000133332323
Q gi|254780809|r 295 EVENADLILLLKEINSKKEISF----------PKNIDFIFIGTKSDLYSTYTEE--------------YDHLISSFTGEG 350 (440)
Q Consensus 295 ~i~~aDlil~v~D~~~~~~~~~----------~~~~~~i~V~NK~Dl~~~~~~~--------------~~~~ISaktg~G 350 (440)
....||.+++|+|.+++...+. ..+.|.++|.||+||....... ..+.+|||+|.|
T Consensus 74 ~~~~ad~~ilVyDit~~~SF~~i~~~~~~~~~~~~iP~vlVgNK~DL~~~rqV~~~e~~~~a~~~~~~~~~e~SAktg~n 153 (169)
T cd01892 74 ELAACDVACLVYDSSDPKSFSYCAEVYKKYFMLGEIPCLFVAAKADLDEQQQRYEVQPDEFCRKLGLPPPLHFSSKLGDS 153 (169)
T ss_pred HHCCCCEEEEEEECCCHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCCEEEEEECCCC
T ss_conf 75469889999979987899999999997005689818999886554203754677699999983999666998327989
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 5899999999963
Q gi|254780809|r 351 LEELINKIKSILS 363 (440)
Q Consensus 351 i~~L~~~I~~~l~ 363 (440)
++++-..|.+...
T Consensus 154 v~~~F~~la~~a~ 166 (169)
T cd01892 154 SNELFTKLATAAQ 166 (169)
T ss_pred HHHHHHHHHHHHH
T ss_conf 8999999999976
No 84
>cd01890 LepA LepA subfamily. LepA belongs to the GTPase family of and exhibits significant homology to the translation factors EF-G and EF-Tu, indicating its possible involvement in translation and association with the ribosome. LepA is ubiquitous in bacteria and eukaryota (e.g. yeast GUF1p), but is missing from archaea. This pattern of phyletic distribution suggests that LepA evolved through a duplication of the EF-G gene in bacteria, followed by early transfer into the eukaryotic lineage, most likely from the promitochondrial endosymbiont. Yeast GUF1p is not essential and mutant cells did not reveal any marked phenotype.
Probab=99.48 E-value=9.2e-14 Score=115.30 Aligned_cols=135 Identities=24% Similarity=0.329 Sum_probs=89.7
Q ss_pred CEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCC--CEEECCC-------------CCCCC-----CEEEEEEECCHHCCC
Q ss_conf 024311466318889999855200023454687--2110001-------------24568-----358999508100024
Q gi|254780809|r 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGT--TRDVLTI-------------DLDLE-----GYLVKISDTAGIRET 280 (440)
Q Consensus 221 ~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GT--TRD~i~~-------------~~~i~-----g~~~~l~DTaGir~t 280 (440)
.|+|+|.+++|||||+++|+....++... .++ ..|.... .+.+. .+.+.|+||||--+-
T Consensus 2 NiaiiGHvd~GKTTL~~~ll~~tg~i~~~-~~~~~~~D~~~~E~eRgiTi~~~~~~~~~~~~~~~~~~in~iDtPGh~dF 80 (179)
T cd01890 2 NFSIIAHIDHGKSTLADRLLELTGTVSKR-EMKEQVLDSMDLERERGITIKAQTVRLNYKAKDGQEYLLNLIDTPGHVDF 80 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCC-CCCCEECCCCHHHHHCCCEEEEEEEEEEEECCCCCCEEEEEEECCCCCCC
T ss_conf 59999489989899999999985995414-57324416517678638668743368884136787148999989986451
Q ss_pred CHHHHHHHHHHHHHHHHHHCCEEECCCCCCHHH--------HHHHCCCCCCCCCCCCCCCCCCCH--------------H
Q ss_conf 103566667888998503011020135898566--------343128985322223334465420--------------0
Q gi|254780809|r 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKKE--------ISFPKNIDFIFIGTKSDLYSTYTE--------------E 338 (440)
Q Consensus 281 ~d~IE~~GI~ra~~~i~~aDlil~v~D~~~~~~--------~~~~~~~~~i~V~NK~Dl~~~~~~--------------~ 338 (440)
.. .....+.-+|..++|+|+.+.-. .....+.|.++++||+|+...... .
T Consensus 81 ~~--------~~~~al~~~D~allVVda~~Gv~~qT~~~~~~a~~~~~p~ivviNKiD~~~ad~~~v~~~i~~~~g~~~~ 152 (179)
T cd01890 81 SY--------EVSRSLAACEGALLLVDATQGVEAQTLANFYLALENNLEIIPVINKIDLPSADPERVKQQIEDVLGLDPS 152 (179)
T ss_pred HH--------HHHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCCC
T ss_conf 77--------8988997544278998647787374899999998769988999865556778999999999998688976
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 00013333232358999999999632
Q gi|254780809|r 339 YDHLISSFTGEGLEELINKIKSILSN 364 (440)
Q Consensus 339 ~~~~ISaktg~Gi~~L~~~I~~~l~~ 364 (440)
..+.+||++|+|++.|++.|.+.++.
T Consensus 153 ~~v~vSA~~g~gv~~Ll~~i~~~ip~ 178 (179)
T cd01890 153 EAILVSAKTGLGVEDLLEAIVERIPP 178 (179)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHCCC
T ss_conf 74884378897989999999964889
No 85
>cd04101 RabL4 RabL4 (Rab-like4) subfamily. RabL4s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL4 lacks a prenylation site at the C-terminus. The specific function of RabL4 remains unknown.
Probab=99.48 E-value=2.3e-13 Score=112.52 Aligned_cols=135 Identities=17% Similarity=0.233 Sum_probs=93.2
Q ss_pred CCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCC-EEECCCCCCC-CC--EEEEEEECCHHCCCCHHHHHHHHHHHHHH
Q ss_conf 30243114663188899998552000234546872-1100012456-83--58999508100024103566667888998
Q gi|254780809|r 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT-RDVLTIDLDL-EG--YLVKISDTAGIRETDDIVEKEGIKRTFLE 295 (440)
Q Consensus 220 ~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTT-RD~i~~~~~i-~g--~~~~l~DTaGir~t~d~IE~~GI~ra~~~ 295 (440)
+||+++|.++||||||+++++.....-..++.-|+ -|.....+.+ +| +.+.+.||||-..-. ......
T Consensus 1 iKivllGd~gVGKTsli~r~~~~~~~f~~~y~~Tig~~~~~k~~~~~~~~~i~l~iwDtaG~e~~~--------~l~~~~ 72 (164)
T cd04101 1 LRCAVVGDPAVGKTAFVQMFHSNGAVFPKNYLMTTGCDFVVKEVPVDTDNTVELFIFDSAGQELYS--------DMVSNY 72 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEEEEECCCCEEEEEEEECCCCCCHH--------HHHHHH
T ss_conf 999999959958899999999788866888888645788999999789979999999799984006--------789999
Q ss_pred HHHHCCEEECCCCCCHHHHHH-----------HCCCCCCCCCCCCCCCCCCCHH-------------HHHHHHHHHHHHH
Q ss_conf 503011020135898566343-----------1289853222233344654200-------------0001333323235
Q gi|254780809|r 296 VENADLILLLKEINSKKEISF-----------PKNIDFIFIGTKSDLYSTYTEE-------------YDHLISSFTGEGL 351 (440)
Q Consensus 296 i~~aDlil~v~D~~~~~~~~~-----------~~~~~~i~V~NK~Dl~~~~~~~-------------~~~~ISaktg~Gi 351 (440)
...||.+++|+|.+++..... ..+.|.++|.||+||.+..... .-+.+|||+|.|+
T Consensus 73 ~~~a~~~ilvydit~~~Sf~~~~~w~~~i~~~~~~~p~ilVgNK~DL~~~r~V~~~e~~~~a~~~~~~~~E~SAk~g~nV 152 (164)
T cd04101 73 WESPSVFILVYDVSNKASFENCSRWVNKVRTASKHMPGVLVGNKMDLADKAEVTDAQAQAFAQANQLKFFKTSALRGVGY 152 (164)
T ss_pred HHHCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCH
T ss_conf 76426899997077466899999999999976689868999872244524556999999999988998999866889098
Q ss_pred HHHHHHHHHHH
Q ss_conf 89999999996
Q gi|254780809|r 352 EELINKIKSIL 362 (440)
Q Consensus 352 ~~L~~~I~~~l 362 (440)
+++-+.|.+.+
T Consensus 153 ~e~F~~lar~~ 163 (164)
T cd04101 153 EEPFESLARAF 163 (164)
T ss_pred HHHHHHHHHHH
T ss_conf 99999999986
No 86
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=99.48 E-value=3.3e-13 Score=111.41 Aligned_cols=135 Identities=22% Similarity=0.239 Sum_probs=94.8
Q ss_pred CEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCCEEECCCCCCCCCE--EEEEEECCHHCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 02431146631888999985520002345468721100012456835--8999508100024103566667888998503
Q gi|254780809|r 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY--LVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298 (440)
Q Consensus 221 ~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTTRD~i~~~~~i~g~--~~~l~DTaGir~t~d~IE~~GI~ra~~~i~~ 298 (440)
||+++|.++||||||++++++..- ..++.-|.-|.....+.++|. .+.+.||||-.+-. .........
T Consensus 3 KIvlvGd~~VGKTsli~r~~~~~f--~~~y~~Ti~~~~~k~i~~~~~~~~l~iwDtaG~e~~~--------~~~~~~~~~ 72 (180)
T cd04137 3 KIAVLGSRSVGKSSLTVQFVEGHF--VESYYPTIENTFSKIIRYKGQDYHLEIVDTAGQDEYS--------ILPQKYSIG 72 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCC--CCCCCCCCCCCCCEEEEECCEEEEEEEEECCCCCCCC--------HHHHHHHHH
T ss_conf 899999899889999999970978--9985881244113799999999999999899870100--------667999863
Q ss_pred HCCEEECCCCCCHHHHHH-------------HCCCCCCCCCCCCCCCCCCCHH-------------HHHHHHHHHHHHHH
Q ss_conf 011020135898566343-------------1289853222233344654200-------------00013333232358
Q gi|254780809|r 299 ADLILLLKEINSKKEISF-------------PKNIDFIFIGTKSDLYSTYTEE-------------YDHLISSFTGEGLE 352 (440)
Q Consensus 299 aDlil~v~D~~~~~~~~~-------------~~~~~~i~V~NK~Dl~~~~~~~-------------~~~~ISaktg~Gi~ 352 (440)
||.+++|+|.+++..+.. ..+.|+++|.||+||.....-. .-+.+||++|.|++
T Consensus 73 a~~~ilvydvt~~~Sf~~~~~~~~~~~~~~~~~~~piilVgNK~DL~~~r~V~~~e~~~~a~~~~~~f~EtSAk~g~nV~ 152 (180)
T cd04137 73 IHGYILVYSVTSRKSFEVVKVIYDKILDMLGKESVPIVLVGNKSDLHTQRQVSTEEGKELAESWGAAFLESSARENENVE 152 (180)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHCCCCHHHHHHHHHHCCCEEEEECCCCCCCHH
T ss_conf 55789997438878899999999999997588888679776534624407889999999999839989997768891989
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 9999999996322
Q gi|254780809|r 353 ELINKIKSILSNK 365 (440)
Q Consensus 353 ~L~~~I~~~l~~~ 365 (440)
++.+.|.+.+...
T Consensus 153 e~F~~l~~~i~k~ 165 (180)
T cd04137 153 EAFELLIEEIEKV 165 (180)
T ss_pred HHHHHHHHHHHHH
T ss_conf 9999999999886
No 87
>COG0012 Predicted GTPase, probable translation factor [Translation, ribosomal structure and biogenesis]
Probab=99.47 E-value=8.3e-13 Score=108.64 Aligned_cols=94 Identities=28% Similarity=0.312 Sum_probs=72.8
Q ss_pred CCCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCCEEECCCCCC------------------CCCEEEEEEECCHHCCC
Q ss_conf 230243114663188899998552000234546872110001245------------------68358999508100024
Q gi|254780809|r 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLD------------------LEGYLVKISDTAGIRET 280 (440)
Q Consensus 219 g~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTTRD~i~~~~~------------------i~g~~~~l~DTaGir~t 280 (440)
++++.|+|.||||||||||+|+... +=+.++|.||-|...+.+. +--.++.|+|.||+-..
T Consensus 2 ~l~~GIVGlPNVGKSTlFnAlT~~~-a~~aNYPF~TIePN~Giv~v~d~rl~~L~~~~~c~~k~~~~~ve~vDIAGLV~G 80 (372)
T COG0012 2 SLKIGIVGLPNVGKSTLFNALTKAG-AEIANYPFCTIEPNVGVVYVPDCRLDELAEIVKCPPKIRPAPVEFVDIAGLVKG 80 (372)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCC-CCCCCCCCCCCCCCEEEEECCCHHHHHHHHHCCCCCCEEEEEEEEEEECCCCCC
T ss_conf 8426774189885888999997489-642489854265773279647367899987538997477610489982453788
Q ss_pred CHHHHHHHHHHHHHHHHHHCCEEECCCCCCHHHH
Q ss_conf 1035666678889985030110201358985663
Q gi|254780809|r 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKKEI 314 (440)
Q Consensus 281 ~d~IE~~GI~ra~~~i~~aDlil~v~D~~~~~~~ 314 (440)
..+=|.+| .+-+..+.++|.+++|+|++...++
T Consensus 81 As~GeGLG-NkFL~~IRevdaI~hVVr~f~d~di 113 (372)
T COG0012 81 ASKGEGLG-NKFLDNIREVDAIIHVVRCFGDTDI 113 (372)
T ss_pred CCCCCCCC-HHHHHHHHHCCEEEEEEEECCCCCC
T ss_conf 54688864-7878765514858999985389865
No 88
>cd04136 Rap_like Rap-like subfamily. The Rap subfamily consists of the Rap1, Rap2, and RSR1. Rap subfamily proteins perform different cellular functions, depending on the isoform and its subcellular localization. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and microsomal membrane of the pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. Rap1 localizes in the nucleus of human oropharyngeal squamous cell carcinomas (SCCs) and cell lines. Rap1 plays a role in phagocytosis by controlling the binding of adhesion receptors (typically integrins) to their ligands. In yeast, Rap1 has been implicated in multiple functions, including activation and silencing of transcription and maintenance of telomeres.
Probab=99.47 E-value=2.1e-13 Score=112.74 Aligned_cols=133 Identities=23% Similarity=0.309 Sum_probs=96.8
Q ss_pred CCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCCEEECCCCCCCCCEE--EEEEECCHHCCCCHHHHHHHHHHHHHHHH
Q ss_conf 3024311466318889999855200023454687211000124568358--99950810002410356666788899850
Q gi|254780809|r 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL--VKISDTAGIRETDDIVEKEGIKRTFLEVE 297 (440)
Q Consensus 220 ~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTTRD~i~~~~~i~g~~--~~l~DTaGir~t~d~IE~~GI~ra~~~i~ 297 (440)
+||+++|.++||||||+++++..+- ..++.-|.-|.....+.++|.. +.+.||||-.+-. ........
T Consensus 2 fKivllGd~~VGKTsli~r~~~~~f--~~~y~~Ti~~~~~k~i~~~~~~~~l~iwDtaG~e~~~--------~~~~~y~~ 71 (163)
T cd04136 2 YKVVVLGSGGVGKSALTVQFVQGIF--VEKYDPTIEDSYRKQIEVDGQQCMLEILDTAGTEQFT--------AMRDLYIK 71 (163)
T ss_pred EEEEEECCCCCCHHHHHHHHHHCCC--CCCCCCCCCCEEEEEEEECCEEEEEEECCCCCCHHHH--------HHHHHHHC
T ss_conf 1999989999889999999971959--8866995420699999999999999864576544555--------67898834
Q ss_pred HHCCEEECCCCCCHHHHHH-------------HCCCCCCCCCCCCCCCCCCCHH-------------HHHHHHHHHHHHH
Q ss_conf 3011020135898566343-------------1289853222233344654200-------------0001333323235
Q gi|254780809|r 298 NADLILLLKEINSKKEISF-------------PKNIDFIFIGTKSDLYSTYTEE-------------YDHLISSFTGEGL 351 (440)
Q Consensus 298 ~aDlil~v~D~~~~~~~~~-------------~~~~~~i~V~NK~Dl~~~~~~~-------------~~~~ISaktg~Gi 351 (440)
.||.+++|+|.+++..... .++.|+++|.||+||....... .-+.+||++|.|+
T Consensus 72 ~a~~~ilvydvt~~~Sf~~l~~~~~~i~~~~~~~~~piilVGnK~Dl~~~r~v~~~~~~~~a~~~~~~~~E~SAk~~~nV 151 (163)
T cd04136 72 NGQGFVLVYSITSQSSFNDLQDLREQILRVKDTENVPMVLVGNKCDLEDERVVSREEGQALARQWGCPFYETSAKSKINV 151 (163)
T ss_pred CCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEECCCCHHHHCCCCHHHHHHHHHHCCCEEEEECCCCCCCH
T ss_conf 68769997048988999999999999998618888867876235472640789999999999984998999744878058
Q ss_pred HHHHHHHHHHH
Q ss_conf 89999999996
Q gi|254780809|r 352 EELINKIKSIL 362 (440)
Q Consensus 352 ~~L~~~I~~~l 362 (440)
+++.+.+.+.+
T Consensus 152 ~e~F~~l~~~i 162 (163)
T cd04136 152 DEVFADLVRQI 162 (163)
T ss_pred HHHHHHHHHHH
T ss_conf 99999999963
No 89
>cd04118 Rab24 Rab24 subfamily. Rab24 is distinct from other Rabs in several ways. It exists primarily in the GTP-bound state, having a low intrinsic GTPase activity; it is not efficiently geranyl-geranylated at the C-terminus; it does not form a detectable complex with Rab GDP-dissociation inhibitors (GDIs); and it has recently been shown to undergo tyrosine phosphorylation when overexpressed in vitro. The specific function of Rab24 still remains unknown. It is found in a transport route between ER-cis-Golgi and late endocytic compartments. It is putatively involved in an autophagic pathway, possibly directing misfolded proteins in the ER to degradative pathways. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilita
Probab=99.47 E-value=3.8e-13 Score=111.01 Aligned_cols=137 Identities=21% Similarity=0.283 Sum_probs=97.3
Q ss_pred CCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCC-EEECCCCCCCCCE--EEEEEECCHHCCCCHHHHHHHHHHHHHHH
Q ss_conf 30243114663188899998552000234546872-1100012456835--89995081000241035666678889985
Q gi|254780809|r 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT-RDVLTIDLDLEGY--LVKISDTAGIRETDDIVEKEGIKRTFLEV 296 (440)
Q Consensus 220 ~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTT-RD~i~~~~~i~g~--~~~l~DTaGir~t~d~IE~~GI~ra~~~i 296 (440)
+||+++|.+.||||||+++++... -...++..|. -|+....+.++|. .+.+.||||-..-. .......
T Consensus 1 vKivlvGd~~VGKTsLi~r~~~~~-f~~~~y~~tig~~~~~k~i~v~~~~v~l~iwDtaG~e~~~--------~l~~~y~ 71 (193)
T cd04118 1 VKVVMLGKESVGKTSLVERYVHHR-FLVGPYQNTIGAAFVAKRMVVGERVVTLGIWDTAGSERYE--------AMSRIYY 71 (193)
T ss_pred CEEEEECCCCCCHHHHHHHHHHCC-CCCCCCCCCCEEEEEEEEEEECCEEEEEEEEECCCCHHHH--------HHHHHHH
T ss_conf 989999969987999999998597-9989978763058899999999999999999199973123--------5579883
Q ss_pred HHHCCEEECCCCCCHHHHHH-----------HCCCCCCCCCCCCCCCCCCCH-------H----------HHHHHHHHHH
Q ss_conf 03011020135898566343-----------128985322223334465420-------0----------0001333323
Q gi|254780809|r 297 ENADLILLLKEINSKKEISF-----------PKNIDFIFIGTKSDLYSTYTE-------E----------YDHLISSFTG 348 (440)
Q Consensus 297 ~~aDlil~v~D~~~~~~~~~-----------~~~~~~i~V~NK~Dl~~~~~~-------~----------~~~~ISaktg 348 (440)
..||.+++|+|.+++..+.. ..+.|+++|.||+||...... + ..+.+|||+|
T Consensus 72 ~~a~~~ilvydit~~~Sf~~i~~W~~~i~~~~~~~~iilVGnK~DL~~~~~~~r~V~~~e~~~~a~~~~~~~~E~SAktg 151 (193)
T cd04118 72 RGAKAAIVCYDLTDSSSFERAKFWVKELQNLEEHCKIYLCGTKSDLIEQDRSLRQVDFHDVQDFADEIKAQHFETSSKTG 151 (193)
T ss_pred CCCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECHHHHHCCCCCCCCCHHHHHHHHHHCCCEEEEECCCCC
T ss_conf 47744578830698799998999999999748999979997746632201666446899999999980996999838989
Q ss_pred HHHHHHHHHHHHHHHHH
Q ss_conf 23589999999996322
Q gi|254780809|r 349 EGLEELINKIKSILSNK 365 (440)
Q Consensus 349 ~Gi~~L~~~I~~~l~~~ 365 (440)
.|++++.+.|.+.+...
T Consensus 152 ~nV~e~F~~la~~i~~~ 168 (193)
T cd04118 152 QNVDELFQKVAEDFVSR 168 (193)
T ss_pred CCHHHHHHHHHHHHHHH
T ss_conf 39899999999999976
No 90
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=99.46 E-value=4.8e-13 Score=110.32 Aligned_cols=135 Identities=24% Similarity=0.300 Sum_probs=94.7
Q ss_pred CCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCC-EEECCCCCCCCCE--EEEEEECCHHCCCCHHHHHHHHHHHHHHH
Q ss_conf 30243114663188899998552000234546872-1100012456835--89995081000241035666678889985
Q gi|254780809|r 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT-RDVLTIDLDLEGY--LVKISDTAGIRETDDIVEKEGIKRTFLEV 296 (440)
Q Consensus 220 ~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTT-RD~i~~~~~i~g~--~~~l~DTaGir~t~d~IE~~GI~ra~~~i 296 (440)
+||+++|.++||||||+++++..+- ..++.-|. -|+....+.++|. .+.+.||||-..-. .......
T Consensus 1 ~KivlvGd~~VGKTsli~r~~~~~f--~~~y~~Tig~d~~~k~i~~~~~~~~l~iwDtaG~e~~~--------~l~~~~~ 70 (172)
T cd01862 1 LKVIILGDSGVGKTSLMNQYVNKKF--SNQYKATIGADFLTKEVTVDDKLVTLQIWDTAGQERFQ--------SLGVAFY 70 (172)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCC--CCCCCCCCCEEEEEEEEEECCEEEEEEEEECCCCHHHH--------HHHHHHH
T ss_conf 9899999899789999999952988--98757755516999999999999999999699983110--------6889986
Q ss_pred HHHCCEEECCCCCCHHHHHHH----------------CCCCCCCCCCCCCCCCCCCH----------H----HHHHHHHH
Q ss_conf 030110201358985663431----------------28985322223334465420----------0----00013333
Q gi|254780809|r 297 ENADLILLLKEINSKKEISFP----------------KNIDFIFIGTKSDLYSTYTE----------E----YDHLISSF 346 (440)
Q Consensus 297 ~~aDlil~v~D~~~~~~~~~~----------------~~~~~i~V~NK~Dl~~~~~~----------~----~~~~ISak 346 (440)
..||.+++|+|.+++..+... .+.|+++|.||+||.+.... . .-+.+||+
T Consensus 71 ~~a~~~ilvydvt~~~Sf~~l~~w~~~~~~~~~~~~~~~~piilvgNK~Dl~~~r~V~~~e~~~~a~~~~~~~~~E~SAk 150 (172)
T cd01862 71 RGADCCVLVYDVTNPKSFESLDSWRDEFLIQASPSDPENFPFVVLGNKIDLEEKRQVSTKKAQQWCQSNGNIPYFETSAK 150 (172)
T ss_pred HHCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCHHHCCCCCHHHHHHHHHHCCCCEEEEECCC
T ss_conf 52757999933899899999999999999972767765763899963368364189999999999997699789997526
Q ss_pred HHHHHHHHHHHHHHHHHH
Q ss_conf 232358999999999632
Q gi|254780809|r 347 TGEGLEELINKIKSILSN 364 (440)
Q Consensus 347 tg~Gi~~L~~~I~~~l~~ 364 (440)
+|.|++++.+.|.+.+-.
T Consensus 151 ~~~nV~e~F~~l~~~~l~ 168 (172)
T cd01862 151 EAINVEQAFETIARKALE 168 (172)
T ss_pred CCCCHHHHHHHHHHHHHH
T ss_conf 791989999999999998
No 91
>cd04176 Rap2 Rap2 subgroup. The Rap2 subgroup is part of the Rap subfamily of the Ras family. It consists of Rap2a, Rap2b, and Rap2c. Both isoform 3 of the human mitogen-activated protein kinase kinase kinase kinase 4 (MAP4K4) and Traf2- and Nck-interacting kinase (TNIK) are putative effectors of Rap2 in mediating the activation of c-Jun N-terminal kinase (JNK) to regulate the actin cytoskeleton. In human platelets, Rap2 was shown to interact with the cytoskeleton by binding the actin filaments. In embryonic Xenopus development, Rap2 is necessary for the Wnt/beta-catenin signaling pathway. The Rap2 interacting protein 9 (RPIP9) is highly expressed in human breast carcinomas and correlates with a poor prognosis, suggesting a role for Rap2 in breast cancer oncogenesis. Rap2b, but not Rap2a, Rap2c, Rap1a, or Rap1b, is expressed in human red blood cells, where it is believed to be involved in vesiculation. A number of additional effector proteins for Rap2 have been identified, incl
Probab=99.46 E-value=3.3e-13 Score=111.47 Aligned_cols=133 Identities=21% Similarity=0.281 Sum_probs=96.0
Q ss_pred CCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCCEEECCCCCCCCCEE--EEEEECCHHCCCCHHHHHHHHHHHHHHHH
Q ss_conf 3024311466318889999855200023454687211000124568358--99950810002410356666788899850
Q gi|254780809|r 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL--VKISDTAGIRETDDIVEKEGIKRTFLEVE 297 (440)
Q Consensus 220 ~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTTRD~i~~~~~i~g~~--~~l~DTaGir~t~d~IE~~GI~ra~~~i~ 297 (440)
+||+++|.++||||||+++++...- ..++.-|.-|.....+.++|.+ +.+.||||-.+-. ........
T Consensus 2 ~KivllGd~~VGKTsli~r~~~~~f--~~~y~pTi~~~~~k~i~~~~~~~~l~iwDtaG~e~~~--------~~~~~~~~ 71 (163)
T cd04176 2 YKVVVLGSGGVGKSALTVQFVSGTF--IEKYDPTIEDFYRKEIEVDSSPSVLEILDTAGTEQFA--------SMRDLYIK 71 (163)
T ss_pred EEEEEECCCCCCHHHHHHHHHHCCC--CCCCCCCCCCEEEEEEEECCEEEEEEEEECCCCHHHH--------HHHHHHHC
T ss_conf 3999989999789999999970989--9755885233167999988899999999898854256--------78899855
Q ss_pred HHCCEEECCCCCCHHHHHH-------------HCCCCCCCCCCCCCCCCCCCHH-------------HHHHHHHHHHHHH
Q ss_conf 3011020135898566343-------------1289853222233344654200-------------0001333323235
Q gi|254780809|r 298 NADLILLLKEINSKKEISF-------------PKNIDFIFIGTKSDLYSTYTEE-------------YDHLISSFTGEGL 351 (440)
Q Consensus 298 ~aDlil~v~D~~~~~~~~~-------------~~~~~~i~V~NK~Dl~~~~~~~-------------~~~~ISaktg~Gi 351 (440)
.||.+++|+|.+++..+.. ..+.|+++|.||+||....... .-+.+||++|.|+
T Consensus 72 ~a~~~ilvydit~~~Sf~~l~~~~~~i~~~~~~~~~piilVgNK~DL~~~r~V~~~e~~~~a~~~~~~~~E~SAk~~~nV 151 (163)
T cd04176 72 NGQGFIVVYSLVNQQTFQDIKPMRDQIVRVKGYEKVPIILVGNKVDLESEREVSSAEGRALAEEWGCPFMETSAKSKTMV 151 (163)
T ss_pred CCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCH
T ss_conf 78656897127988999999999999999738999639997431340012769999999999985998999856878177
Q ss_pred HHHHHHHHHHH
Q ss_conf 89999999996
Q gi|254780809|r 352 EELINKIKSIL 362 (440)
Q Consensus 352 ~~L~~~I~~~l 362 (440)
+++-+.+.+.+
T Consensus 152 ~~~F~~l~~~i 162 (163)
T cd04176 152 NELFAEIVRQM 162 (163)
T ss_pred HHHHHHHHHHH
T ss_conf 99999999953
No 92
>cd04125 RabA_like RabA-like subfamily. RabA was first identified in D. discoideum, where its expression levels were compared to other Rabs in growing and developing cells. The RabA mRNA levels were below the level of detection by Northern blot analysis, suggesting a very low level of expression. The function of RabA remains unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.46 E-value=5.1e-13 Score=110.10 Aligned_cols=139 Identities=19% Similarity=0.238 Sum_probs=96.3
Q ss_pred CCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCC-EEECCCCCCCCC--EEEEEEECCHHCCCCHHHHHHHHHHHHHHH
Q ss_conf 30243114663188899998552000234546872-110001245683--589995081000241035666678889985
Q gi|254780809|r 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT-RDVLTIDLDLEG--YLVKISDTAGIRETDDIVEKEGIKRTFLEV 296 (440)
Q Consensus 220 ~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTT-RD~i~~~~~i~g--~~~~l~DTaGir~t~d~IE~~GI~ra~~~i 296 (440)
+||+++|.++||||||+++++...= ..++.-|. -|.....+.++| +.+.+.||||-..-. .......
T Consensus 1 ~KivvvGd~~VGKTsli~r~~~~~f--~~~~~~Tig~~~~~k~i~~~~~~~~l~iwDtaG~e~~~--------~l~~~~~ 70 (188)
T cd04125 1 FKVVIIGDYGVGKSSLLKRFTEDEF--SESTKSTIGVDFKIKTVYIENKIIKLQIWDTNGQERFR--------SLNNSYY 70 (188)
T ss_pred CEEEEECCCCCCHHHHHHHHHHCCC--CCCCCCCCCEEEEEEEEEECCEEEEEEEEECCCCHHHH--------HHHHHHH
T ss_conf 9799999999789999999951968--99868865403579999999999999999899971045--------7899986
Q ss_pred HHHCCEEECCCCCCHHHHHH------------HCCCCCCCCCCCCCCCCCCCHH-------------HHHHHHHHHHHHH
Q ss_conf 03011020135898566343------------1289853222233344654200-------------0001333323235
Q gi|254780809|r 297 ENADLILLLKEINSKKEISF------------PKNIDFIFIGTKSDLYSTYTEE-------------YDHLISSFTGEGL 351 (440)
Q Consensus 297 ~~aDlil~v~D~~~~~~~~~------------~~~~~~i~V~NK~Dl~~~~~~~-------------~~~~ISaktg~Gi 351 (440)
..||.+++|+|.+++..+.. ..+.|+++|.||+||.+..... .-+.+||++|.|+
T Consensus 71 ~~a~~~ilvydit~~~Sf~~l~~w~~~i~~~~~~~~~iilvgNK~DL~~~r~V~~~e~~~~a~~~~~~~~E~SAktg~nV 150 (188)
T cd04125 71 RGAHGYLLVYDVTDQESFENLKFWINEINRYARENVIKVIVANKSDLVNNKVVDSNIAKSFCDSLNIPFFETSAKQSINV 150 (188)
T ss_pred CCCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCEEEECCHHHHHHCCCCCHHHHHHHHHHCCCEEEEECCCCCCCH
T ss_conf 37867999803898789999999999999878986624510013447660679999999999986998999747889098
Q ss_pred HHHHHHHHHHHHHHCCC
Q ss_conf 89999999996322035
Q gi|254780809|r 352 EELINKIKSILSNKFKK 368 (440)
Q Consensus 352 ~~L~~~I~~~l~~~~~~ 368 (440)
+++.+.|.+.+-.....
T Consensus 151 ~e~F~~l~~~i~~~~~~ 167 (188)
T cd04125 151 EEAFILLVKLIIKRLEE 167 (188)
T ss_pred HHHHHHHHHHHHHHHHH
T ss_conf 99999999999998761
No 93
>PRK09601 translation-associated GTPase; Reviewed
Probab=99.46 E-value=1.2e-12 Score=107.51 Aligned_cols=91 Identities=25% Similarity=0.295 Sum_probs=69.8
Q ss_pred CCCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCCEEECCCCCCCCC---------------EE--EEEEECCHHCCCC
Q ss_conf 230243114663188899998552000234546872110001245683---------------58--9995081000241
Q gi|254780809|r 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG---------------YL--VKISDTAGIRETD 281 (440)
Q Consensus 219 g~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTTRD~i~~~~~i~g---------------~~--~~l~DTaGir~t~ 281 (440)
++++.|+|.||||||||||+|++.+. =+.++|.||-|...+.+.+.. +| +.++|.||+-...
T Consensus 2 ~mkiGivGlPnvGKSTlFnalT~~~~-~~~nyPf~Ti~pn~g~v~VpD~r~~~l~~~~~p~k~i~a~v~~vDiaGLv~gA 80 (364)
T PRK09601 2 GLKCGIVGLPNVGKSTLFNALTKAGA-EAANYPFCTIEPNVGIVPVPDPRLDKLAEIVKPKKIVPTTIEFVDIAGLVKGA 80 (364)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCC-CCCCCCCCCCCCCEEEEECCCHHHHHHHHHHCCCCEEEEEEEEEECCCCCCCC
T ss_conf 82488877999988999999967998-64589988878800688578545899987628765011258999657767875
Q ss_pred HHHHHHHHHHHHHHHHHHCCEEECCCCCCH
Q ss_conf 035666678889985030110201358985
Q gi|254780809|r 282 DIVEKEGIKRTFLEVENADLILLLKEINSK 311 (440)
Q Consensus 282 d~IE~~GI~ra~~~i~~aDlil~v~D~~~~ 311 (440)
.+=|.+| .+-+..+.++|.+++|+++.+.
T Consensus 81 s~G~GLG-N~FL~~iR~~DaiihVVr~F~d 109 (364)
T PRK09601 81 SKGEGLG-NKFLANIREVDAIVHVVRCFED 109 (364)
T ss_pred CCCCCCH-HHHHHHHHHCCEEEEEEECCCC
T ss_conf 3467742-8999988734756775000268
No 94
>COG1161 Predicted GTPases [General function prediction only]
Probab=99.45 E-value=7.8e-14 Score=115.80 Aligned_cols=63 Identities=35% Similarity=0.532 Sum_probs=53.4
Q ss_pred HHHHCCCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCCEEECCCCCCCCCEEEEEEECCHHCCC
Q ss_conf 432023024311466318889999855200023454687211000124568358999508100024
Q gi|254780809|r 215 IIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 (440)
Q Consensus 215 ~l~~g~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTTRD~i~~~~~i~g~~~~l~DTaGir~t 280 (440)
......+|.++|.||||||||+|+|+++..+.||+.||||++.....+.-+ +.|+|||||.-.
T Consensus 128 ~~~~~~~v~vvG~PNVGKSslIN~L~~k~~~~~s~~PG~Tk~~q~i~~~~~---i~LlDtPGii~~ 190 (322)
T COG1161 128 LLKRKIRVGVVGYPNVGKSTLINRLLGKKVAKTSNRPGTTKGIQWIKLDDG---IYLLDTPGIIPP 190 (322)
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCEECCCEEEECCCC---EEEEECCCCCCC
T ss_conf 655560899987897648999999862055523799962045168972786---289738880788
No 95
>cd04113 Rab4 Rab4 subfamily. Rab4 has been implicated in numerous functions within the cell. It helps regulate endocytosis through the sorting, recycling, and degradation of early endosomes. Mammalian Rab4 is involved in the regulation of many surface proteins including G-protein-coupled receptors, transferrin receptor, integrins, and surfactant protein A. Experimental data implicate Rab4 in regulation of the recycling of internalized receptors back to the plasma membrane. It is also believed to influence receptor-mediated antigen processing in B-lymphocytes, in calcium-dependent exocytosis in platelets, in alpha-amylase secretion in pancreatic cells, and in insulin-induced translocation of Glut4 from internal vesicles to the cell surface. Rab4 is known to share effector proteins with Rab5 and Rab11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to p
Probab=99.45 E-value=4.8e-13 Score=110.30 Aligned_cols=132 Identities=27% Similarity=0.295 Sum_probs=91.1
Q ss_pred CCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCC-EEECCCCCCCCCE--EEEEEECCHHCCCCHHHHHHHHHHHHHHH
Q ss_conf 30243114663188899998552000234546872-1100012456835--89995081000241035666678889985
Q gi|254780809|r 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT-RDVLTIDLDLEGY--LVKISDTAGIRETDDIVEKEGIKRTFLEV 296 (440)
Q Consensus 220 ~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTT-RD~i~~~~~i~g~--~~~l~DTaGir~t~d~IE~~GI~ra~~~i 296 (440)
+||+++|.++||||||+++++..+= ..+..-|. .|+....+.++|. .+.+.||||-..-. ..+....
T Consensus 1 ~Kivl~Gd~~vGKTsli~r~~~~~f--~~~~~~Tig~~~~~k~~~~~~~~~~l~iwDtaG~e~~~--------~~~~~~~ 70 (161)
T cd04113 1 FKFIIIGSSGTGKSCLLHRFVENKF--KEDSQHTIGVEFGSKIIRVGGKRVKLQIWDTAGQERFR--------SVTRSYY 70 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHHCCC--CCCCCCCCCEEEEEEEEEECCEEEEEEEEECCCCHHHH--------HHHHHHH
T ss_conf 9899999499679999999972989--99879976457899999999999999999899970122--------6789984
Q ss_pred HHHCCEEECCCCCCHHHHH-------HH-----CCCCCCCCCCCCCCCCCCCHH-------------HHHHHHHHHHHHH
Q ss_conf 0301102013589856634-------31-----289853222233344654200-------------0001333323235
Q gi|254780809|r 297 ENADLILLLKEINSKKEIS-------FP-----KNIDFIFIGTKSDLYSTYTEE-------------YDHLISSFTGEGL 351 (440)
Q Consensus 297 ~~aDlil~v~D~~~~~~~~-------~~-----~~~~~i~V~NK~Dl~~~~~~~-------------~~~~ISaktg~Gi 351 (440)
..||.+++|+|.+++..+. .. .+.|+++|.||+||.+..... .-+.+|||+|.|+
T Consensus 71 ~~a~~~ilvydit~~~Sf~~~~~w~~~i~~~~~~~~~iilVgNK~Dl~~~r~V~~~e~~~~a~~~~~~~~E~SAk~~~nV 150 (161)
T cd04113 71 RGAAGALLVYDITNRTSFEALPTWLSDARALASPNIVVILVGNKSDLADQREVTFLEASRFAQENGLLFLETSALTGENV 150 (161)
T ss_pred HCCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHCCCCCHHHHHHHHHHCCCEEEEECCCCCCCH
T ss_conf 05777899536898899999999999999867999649860343440003788999999999985997999741569058
Q ss_pred HHHHHHHHHH
Q ss_conf 8999999999
Q gi|254780809|r 352 EELINKIKSI 361 (440)
Q Consensus 352 ~~L~~~I~~~ 361 (440)
+++-+.+.+.
T Consensus 151 ~e~F~~la~~ 160 (161)
T cd04113 151 EEAFLKCARS 160 (161)
T ss_pred HHHHHHHHHH
T ss_conf 9999999970
No 96
>cd04114 Rab30 Rab30 subfamily. Rab30 appears to be associated with the Golgi stack. It is expressed in a wide variety of tissue types and in humans maps to chromosome 11. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.44 E-value=5.3e-13 Score=109.99 Aligned_cols=134 Identities=21% Similarity=0.284 Sum_probs=92.7
Q ss_pred CCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCCEEECCCCCCCCCE--EEEEEECCHHCCCCHHHHHHHHHHHHHHHH
Q ss_conf 302431146631888999985520002345468721100012456835--899950810002410356666788899850
Q gi|254780809|r 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY--LVKISDTAGIRETDDIVEKEGIKRTFLEVE 297 (440)
Q Consensus 220 ~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTTRD~i~~~~~i~g~--~~~l~DTaGir~t~d~IE~~GI~ra~~~i~ 297 (440)
+||+++|.++||||||+++++...-. -...|-...|.....+.++|. .+.+.||||-..-.. .......
T Consensus 8 ~KivllGd~~VGKTsli~r~~~~~f~-~~~~~Tig~d~~~k~i~~~~~~v~l~iwDtaG~e~~~~--------l~~~~~~ 78 (169)
T cd04114 8 FKIVLIGNAGVGKTCLVRRFTQGLFP-PGQGATIGVDFMIKTVEIKGEKIKLQIWDTAGQERFRS--------ITQSYYR 78 (169)
T ss_pred EEEEEECCCCCCHHHHHHHHHHCCCC-CCCCCCCCEEEEEEEEEECCEEEEEEEEECCCCCCCCC--------CHHHHHH
T ss_conf 89999998997999999999859899-98677412478999999999999999998999844451--------5577742
Q ss_pred HHCCEEECCCCCCHHHHHH------------HCCCCCCCCCCCCCCCCCCCHH-------------HHHHHHHHHHHHHH
Q ss_conf 3011020135898566343------------1289853222233344654200-------------00013333232358
Q gi|254780809|r 298 NADLILLLKEINSKKEISF------------PKNIDFIFIGTKSDLYSTYTEE-------------YDHLISSFTGEGLE 352 (440)
Q Consensus 298 ~aDlil~v~D~~~~~~~~~------------~~~~~~i~V~NK~Dl~~~~~~~-------------~~~~ISaktg~Gi~ 352 (440)
.||.+++|+|.+++..... ..+.+.++|.||+||.+..... .-+.+|||+|.|++
T Consensus 79 ~a~~~ilvydvt~~~Sf~~l~~w~~~i~~~~~~~~~~ilVGNK~DL~~~r~v~~~~~~~~a~~~~~~~~E~SAktg~nV~ 158 (169)
T cd04114 79 SANALILTYDITCEESFRCLPEWLREIEQYANNKVITILVGNKIDLAERREVSQQRAEEFSDAQDMYYLETSAKESDNVE 158 (169)
T ss_pred CCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHCCCCCHHHHHHHHHHCCCEEEEECCCCCCCHH
T ss_conf 36645998148988899999999999998689886389731134345417889999999999889999998689880889
Q ss_pred HHHHHHHHHH
Q ss_conf 9999999996
Q gi|254780809|r 353 ELINKIKSIL 362 (440)
Q Consensus 353 ~L~~~I~~~l 362 (440)
++-..|.+.+
T Consensus 159 e~F~~la~~l 168 (169)
T cd04114 159 KLFLDLACRL 168 (169)
T ss_pred HHHHHHHHHH
T ss_conf 9999999987
No 97
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.44 E-value=5.8e-13 Score=109.76 Aligned_cols=134 Identities=25% Similarity=0.300 Sum_probs=92.1
Q ss_pred CCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCC-EEECCCCCCCCCE--EEEEEECCHHCCCCHHHHHHHHHHHHHHH
Q ss_conf 30243114663188899998552000234546872-1100012456835--89995081000241035666678889985
Q gi|254780809|r 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT-RDVLTIDLDLEGY--LVKISDTAGIRETDDIVEKEGIKRTFLEV 296 (440)
Q Consensus 220 ~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTT-RD~i~~~~~i~g~--~~~l~DTaGir~t~d~IE~~GI~ra~~~i 296 (440)
+||+++|.++||||||+++++..+- ...+.-|. -|+....+.++|. .+.+.||||-.+- . .......
T Consensus 1 ~Ki~vvG~~~vGKTsli~r~~~~~f--~~~~~~Ti~~~~~~~~i~~~~~~~~l~iwDt~G~e~~----~----~l~~~~~ 70 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKF--SEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERF----R----SITSSYY 70 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHHCCC--CCCCCCCCCEEEEEEEEEECCEEEEEEEEECCCCHHH----H----HHHHHHH
T ss_conf 9899999899779999999941999--9986884566667799999999999999967994466----4----7799883
Q ss_pred HHHCCEEECCCCCCHHHHHH------------HCCCCCCCCCCCCCCCCCCCHH-------------HHHHHHHHHHHHH
Q ss_conf 03011020135898566343------------1289853222233344654200-------------0001333323235
Q gi|254780809|r 297 ENADLILLLKEINSKKEISF------------PKNIDFIFIGTKSDLYSTYTEE-------------YDHLISSFTGEGL 351 (440)
Q Consensus 297 ~~aDlil~v~D~~~~~~~~~------------~~~~~~i~V~NK~Dl~~~~~~~-------------~~~~ISaktg~Gi 351 (440)
..||.+++|+|.+++..+.. ..+.|+++|.||+||.+...-. .-+.+||++|.|+
T Consensus 71 ~~~~~~ilvfdi~~~~Sf~~i~~w~~~i~~~~~~~~piilvgnK~Dl~~~r~V~~~e~~~~a~~~~~~~~e~SAk~~~~v 150 (164)
T smart00175 71 RGAVGALLVYDITNRESFENLKNWLKELREYADPNVVIMLVGNKSDLEDQRQVSREEAEAFAEEHGLPFFETSAKTNTNV 150 (164)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCHHHHCCCCHHHHHHHHHHCCCEEEEECCCCCCCH
T ss_conf 36653688436899899999999999999867999825511645685651879999999999984997999831669088
Q ss_pred HHHHHHHHHHHH
Q ss_conf 899999999963
Q gi|254780809|r 352 EELINKIKSILS 363 (440)
Q Consensus 352 ~~L~~~I~~~l~ 363 (440)
+++.+.|.+.+-
T Consensus 151 ~e~F~~l~~~i~ 162 (164)
T smart00175 151 EEAFEELAREIL 162 (164)
T ss_pred HHHHHHHHHHHH
T ss_conf 999999999997
No 98
>cd04177 RSR1 RSR1 subgroup. RSR1/Bud1p is a member of the Rap subfamily of the Ras family that is found in fungi. In budding yeasts, RSR1 is involved in selecting a site for bud growth on the cell cortex, which directs the establishment of cell polarization. The Rho family GTPase cdc42 and its GEF, cdc24, then establish an axis of polarized growth by organizing the actin cytoskeleton and secretory apparatus at the bud site. It is believed that cdc42 interacts directly with RSR1 in vivo. In filamentous fungi, polar growth occurs at the tips of hypha and at novel growth sites along the extending hypha. In Ashbya gossypii, RSR1 is a key regulator of hyphal growth, localizing at the tip region and regulating in apical polarization of the actin cytoskeleton. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key featu
Probab=99.44 E-value=5.3e-13 Score=110.00 Aligned_cols=134 Identities=22% Similarity=0.308 Sum_probs=93.9
Q ss_pred CCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCCEEECCCCCCCCCE--EEEEEECCHHCCCCHHHHHHHHHHHHHHHH
Q ss_conf 302431146631888999985520002345468721100012456835--899950810002410356666788899850
Q gi|254780809|r 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY--LVKISDTAGIRETDDIVEKEGIKRTFLEVE 297 (440)
Q Consensus 220 ~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTTRD~i~~~~~i~g~--~~~l~DTaGir~t~d~IE~~GI~ra~~~i~ 297 (440)
+||+++|.++||||||+++++..+- ..++.-|.-|.....+.++|. .+.+.||||-.+-.. .......
T Consensus 2 fKivlvGd~~VGKTsli~rf~~~~f--~~~y~pTi~~~~~k~i~i~~~~~~l~iwDtaG~e~~~~--------~~~~~~~ 71 (168)
T cd04177 2 YKIVVLGAGGVGKSALTVQFVQNVF--IESYDPTIEDSYRKQVEIDGRQCDLEILDTAGTEQFTA--------MRELYIK 71 (168)
T ss_pred EEEEEECCCCCCHHHHHHHHHHCCC--CCCCCCCCCCEEEEEEEECCEEEEEEEEECCCCCCCCC--------CHHHHHC
T ss_conf 1999989999779999999961938--98658833315999999999999999982788623334--------5154512
Q ss_pred HHCCEEECCCCCCHHHHHH-------------HCCCCCCCCCCCCCCCCCCCH----------H----HHHHHHHHHHHH
Q ss_conf 3011020135898566343-------------128985322223334465420----------0----000133332323
Q gi|254780809|r 298 NADLILLLKEINSKKEISF-------------PKNIDFIFIGTKSDLYSTYTE----------E----YDHLISSFTGEG 350 (440)
Q Consensus 298 ~aDlil~v~D~~~~~~~~~-------------~~~~~~i~V~NK~Dl~~~~~~----------~----~~~~ISaktg~G 350 (440)
.||.+++|+|.+++..... ..+.|+++|.||+||.+.... . .-+.+|||+|.|
T Consensus 72 ~a~~~ilvydvt~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~DL~~~r~v~~~e~~~~a~~~~~~~~~E~SAk~~~n 151 (168)
T cd04177 72 SGQGFLLVYSVTSEASLNELGELREQVLRIKDSDNVPMVLVGNKADLEDDRQVSREDGVSLSQQWGNVPFYETSARKRTN 151 (168)
T ss_pred CCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCHHHCCCCCHHHHHHHHHHCCCCEEEEECCCCCCC
T ss_conf 68667985368988899999999999998517888748988731461213768999999999974997799962487846
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 5899999999963
Q gi|254780809|r 351 LEELINKIKSILS 363 (440)
Q Consensus 351 i~~L~~~I~~~l~ 363 (440)
++++.+.|.+.+-
T Consensus 152 V~e~F~~l~~~il 164 (168)
T cd04177 152 VDEVFIDLVRQII 164 (168)
T ss_pred HHHHHHHHHHHHH
T ss_conf 8999999999999
No 99
>cd04145 M_R_Ras_like M-Ras/R-Ras-like subfamily. This subfamily contains R-Ras2/TC21, M-Ras/R-Ras3, and related members of the Ras family. M-Ras is expressed in lympho-hematopoetic cells. It interacts with some of the known Ras effectors, but appears to also have its own effectors. Expression of mutated M-Ras leads to transformation of several types of cell lines, including hematopoietic cells, mammary epithelial cells, and fibroblasts. Overexpression of M-Ras is observed in carcinomas from breast, uterus, thyroid, stomach, colon, kidney, lung, and rectum. In addition, expression of a constitutively active M-Ras mutant in murine bone marrow induces a malignant mast cell leukemia that is distinct from the monocytic leukemia induced by H-Ras. TC21, along with H-Ras, has been shown to regulate the branching morphogenesis of ureteric bud cell branching in mice. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an ali
Probab=99.44 E-value=5.6e-13 Score=109.84 Aligned_cols=133 Identities=22% Similarity=0.285 Sum_probs=94.3
Q ss_pred CCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCCEEECCCCCCCCCEE--EEEEECCHHCCCCHHHHHHHHHHHHHHHH
Q ss_conf 3024311466318889999855200023454687211000124568358--99950810002410356666788899850
Q gi|254780809|r 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL--VKISDTAGIRETDDIVEKEGIKRTFLEVE 297 (440)
Q Consensus 220 ~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTTRD~i~~~~~i~g~~--~~l~DTaGir~t~d~IE~~GI~ra~~~i~ 297 (440)
+||+++|.++||||||++++++..= ..++.-|.-|.....+.++|.. +.+.||||-.+-.. .......
T Consensus 3 ~Kiv~lGd~~VGKTsli~r~~~~~f--~~~y~~Ti~~~~~k~~~~~~~~~~l~iwDtaG~e~~~~--------~~~~~~~ 72 (164)
T cd04145 3 YKLVVVGGGGVGKSALTIQFIQSYF--VTDYDPTIEDSYTKQCEIDGQWAILDILDTAGQEEFSA--------MREQYMR 72 (164)
T ss_pred EEEEEECCCCCCHHHHHHHHHCCCC--CCCCCCCEEEEEEEEEEECCEEEEEEEEECCCCCCCCH--------HHHHHHC
T ss_conf 7999999999788999999980989--87567841358999999999999999998988603125--------6798734
Q ss_pred HHCCEEECCCCCCHHHHHH-------------HCCCCCCCCCCCCCCCCCCCHH-------------HHHHHHHHHHHHH
Q ss_conf 3011020135898566343-------------1289853222233344654200-------------0001333323235
Q gi|254780809|r 298 NADLILLLKEINSKKEISF-------------PKNIDFIFIGTKSDLYSTYTEE-------------YDHLISSFTGEGL 351 (440)
Q Consensus 298 ~aDlil~v~D~~~~~~~~~-------------~~~~~~i~V~NK~Dl~~~~~~~-------------~~~~ISaktg~Gi 351 (440)
.||.+++|+|.+++..... ..+.|+++|.||+||.+...-. .-+.+||++|.|+
T Consensus 73 ~a~~~ilvydi~~~~Sf~~~~~~~~~i~~~~~~~~~piilVgNK~DL~~~r~Vs~~e~~~~a~~~~~~~~E~SAk~~~nV 152 (164)
T cd04145 73 TGEGFLLVFSVTDRGSFEEVDKFHTQILRVKDRDEFPMILVGNKADLEHQRKVSREEGQELARKLKIPYIETSAKDRLNV 152 (164)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHHCCCCHHHHHHHHHHCCCEEEEECCCCCCCH
T ss_conf 67874689856735439999999999998618877752653034573540889999999999981998999854868277
Q ss_pred HHHHHHHHHHH
Q ss_conf 89999999996
Q gi|254780809|r 352 EELINKIKSIL 362 (440)
Q Consensus 352 ~~L~~~I~~~l 362 (440)
+++.+.|.+.+
T Consensus 153 ~e~F~~l~~~I 163 (164)
T cd04145 153 DKAFHDLVRVI 163 (164)
T ss_pred HHHHHHHHHHH
T ss_conf 99999999975
No 100
>KOG1490 consensus
Probab=99.44 E-value=8.1e-14 Score=115.68 Aligned_cols=143 Identities=22% Similarity=0.247 Sum_probs=103.8
Q ss_pred HCCCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCCEEECCCCCCCCCEEEEEEECCHHCC----CCHHHHHHHHHHHH
Q ss_conf 02302431146631888999985520002345468721100012456835899950810002----41035666678889
Q gi|254780809|r 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE----TDDIVEKEGIKRTF 293 (440)
Q Consensus 218 ~g~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTTRD~i~~~~~i~g~~~~l~DTaGir~----t~d~IE~~GI~ra~ 293 (440)
+..+..++|.|||||||++|.++..+.- |-++|.||+-..-+.+++.=..+..+|||||-+ ..|.||...|. |+
T Consensus 167 ~trTlllcG~PNVGKSSf~~~vtradve-vqpYaFTTksL~vGH~dykYlrwQViDTPGILD~plEdrN~IEmqsIT-AL 244 (620)
T KOG1490 167 NTRTLLVCGYPNVGKSSFNNKVTRADDE-VQPYAFTTKLLLVGHLDYKYLRWQVIDTPGILDRPEEDRNIIEMQIIT-AL 244 (620)
T ss_pred CCCEEEEECCCCCCCHHHCCCCCCCCCC-CCCCCCCCCHHHHHHHHHHEEEEEECCCCCCCCCCHHHHHHHHHHHHH-HH
T ss_conf 8671798527887737643552015555-577665510121002032402344038841247605432179999999-99
Q ss_pred HHHHHHCCEEECCCCCCHHH-------------HHHHCCCCCCCCCCCCCCCCCCCH-------------HH---HHHHH
Q ss_conf 98503011020135898566-------------343128985322223334465420-------------00---00133
Q gi|254780809|r 294 LEVENADLILLLKEINSKKE-------------ISFPKNIDFIFIGTKSDLYSTYTE-------------EY---DHLIS 344 (440)
Q Consensus 294 ~~i~~aDlil~v~D~~~~~~-------------~~~~~~~~~i~V~NK~Dl~~~~~~-------------~~---~~~IS 344 (440)
.++.. .|||+.|.|.... -....+++.|+|+||+|+.....- +. ....|
T Consensus 245 AHLra--aVLYfmDLSe~CGySva~QvkLfhsIKpLFaNK~~IlvlNK~D~m~~edL~~~~~~ll~~~~~~~~v~v~~tS 322 (620)
T KOG1490 245 AHLRS--AVLYFMDLSEMCGYSVAAQVKLYHSIKPLFANKVTILVLNKIDAMRPEDLDQKNQELLQTIIDDGNVKVVQTS 322 (620)
T ss_pred HHHHH--HHEEEEECHHHHCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEEC
T ss_conf 87565--6411343221208889999999987678862884699952002568656687889999998860483388732
Q ss_pred HHHHHHHHH---------HHHHHHHHHHH
Q ss_conf 332323589---------99999999632
Q gi|254780809|r 345 SFTGEGLEE---------LINKIKSILSN 364 (440)
Q Consensus 345 aktg~Gi~~---------L~~~I~~~l~~ 364 (440)
|.+.+|+.. |-..+.+++..
T Consensus 323 ~~~eegVm~Vrt~ACe~LLa~RVE~Klks 351 (620)
T KOG1490 323 CVQEEGVMDVRTTACEALLAARVEQKLKS 351 (620)
T ss_pred CCCHHCEEEHHHHHHHHHHHHHHHHHHHH
T ss_conf 55400200077789999999999998643
No 101
>cd01893 Miro1 Miro1 subfamily. Miro (mitochondrial Rho) proteins have tandem GTP-binding domains separated by a linker region containing putative calcium-binding EF hand motifs. Genes encoding Miro-like proteins were found in several eukaryotic organisms. This CD represents the N-terminal GTPase domain of Miro proteins. These atypical Rho GTPases have roles in mitochondrial homeostasis and apoptosis. Most Rho proteins contain a lipid modification site at the C-terminus; however, Miro is one of few Rho subfamilies that lack this feature.
Probab=99.44 E-value=6.8e-13 Score=109.24 Aligned_cols=132 Identities=22% Similarity=0.311 Sum_probs=92.2
Q ss_pred CCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCCEEECCCCCCCC--CEEEEEEECCHHCCCCHHHHHHHHHHHHHHHH
Q ss_conf 3024311466318889999855200023454687211000124568--35899950810002410356666788899850
Q gi|254780809|r 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE--GYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297 (440)
Q Consensus 220 ~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTTRD~i~~~~~i~--g~~~~l~DTaGir~t~d~IE~~GI~ra~~~i~ 297 (440)
+||+++|.++||||||++++++.+= ..++| +|-+.....+.++ .+.+.+.||||--+.. ........
T Consensus 1 lKiv~vGd~~VGKTsli~r~~~~~F--~~~~~-~t~~~~~~~~~~~~~~v~l~i~DtaG~e~~~--------~~~~~~~~ 69 (166)
T cd01893 1 VRIVLIGDEGVGKSSLIMSLVSEEF--PENVP-RVLPEITIPADVTPERVPTTIVDTSSRPQDR--------ANLAAEIR 69 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHHCCC--CCCCC-CCCCCEEEEEEECCEEEEEEEEECCCCCCCC--------HHHHHHHC
T ss_conf 9899999999899999999984978--88777-6345689999988909999999899872302--------45798736
Q ss_pred HHCCEEECCCCCCHHHHHH------------HCCCCCCCCCCCCCCCCCCCHH------------H-----HHHHHHHHH
Q ss_conf 3011020135898566343------------1289853222233344654200------------0-----001333323
Q gi|254780809|r 298 NADLILLLKEINSKKEISF------------PKNIDFIFIGTKSDLYSTYTEE------------Y-----DHLISSFTG 348 (440)
Q Consensus 298 ~aDlil~v~D~~~~~~~~~------------~~~~~~i~V~NK~Dl~~~~~~~------------~-----~~~ISaktg 348 (440)
.||.+++|+|.+++..+.. ..+.|+++|.||+||.+..... . -+.+|||+|
T Consensus 70 ~a~~~ilvydit~~~Sf~~i~~~w~~~i~~~~~~~piilvGNK~DL~~~r~~~~~e~~~~~~~~~~~~~~~~~EtSAktg 149 (166)
T cd01893 70 KANVICLVYSVDRPSTLERIRTKWLPLIRRLGVKVPIILVGNKSDLRDGSSQAGLEEEMLPIMNEFREIETCVECSAKTL 149 (166)
T ss_pred CCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCC
T ss_conf 89889999708987789999999999999868999689999886540025033588999999997307488999065889
Q ss_pred HHHHHHHHHHHHHH
Q ss_conf 23589999999996
Q gi|254780809|r 349 EGLEELINKIKSIL 362 (440)
Q Consensus 349 ~Gi~~L~~~I~~~l 362 (440)
.|++++-+.+.+.+
T Consensus 150 ~nV~e~F~~~~k~~ 163 (166)
T cd01893 150 INVSEVFYYAQKAV 163 (166)
T ss_pred CCHHHHHHHHHHHH
T ss_conf 19899999999998
No 102
>cd04158 ARD1 ARD1 subfamily. ARD1 (ADP-ribosylation factor domain protein 1) is an unusual member of the Arf family. In addition to the C-terminal Arf domain, ARD1 has an additional 46-kDa N-terminal domain that contains a RING finger domain, two predicted B-Boxes, and a coiled-coil protein interaction motif. This domain belongs to the TRIM (tripartite motif) or RBCC (RING, B-Box, coiled-coil) family. Like most Arfs, the ARD1 Arf domain lacks detectable GTPase activity. However, unlike most Arfs, the full-length ARD1 protein has significant GTPase activity due to the GAP (GTPase-activating protein) activity exhibited by the 46-kDa N-terminal domain. The GAP domain of ARD1 is specific for its own Arf domain and does not bind other Arfs. The rate of GDP dissociation from the ARD1 Arf domain is slowed by the adjacent 15 amino acids, which act as a GDI (GDP-dissociation inhibitor) domain. ARD1 is ubiquitously expressed in cells and localizes to the Golgi and to the lysosomal membra
Probab=99.43 E-value=6.8e-13 Score=109.26 Aligned_cols=132 Identities=17% Similarity=0.212 Sum_probs=96.7
Q ss_pred CEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCCEEECCCCCCCCCEEEEEEECCHHCCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf 02431146631888999985520002345468721100012456835899950810002410356666788899850301
Q gi|254780809|r 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 (440)
Q Consensus 221 ~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTTRD~i~~~~~i~g~~~~l~DTaGir~t~d~IE~~GI~ra~~~i~~aD 300 (440)
||+++|.+||||||++++|.+.+-.-+.+..| +-...+.+++..+.+.||+|-..-. .........+|
T Consensus 1 KIlilGl~~sGKTtil~~l~~~~~~~~~pT~G----~~~~~i~~~~~~l~iwD~gG~~~~r--------~~w~~Yy~~~~ 68 (169)
T cd04158 1 RVVTLGLDGAGKTTILFKLKQDEFMQPIPTIG----FNVETVEYKNLKFTIWDVGGKHKLR--------PLWKHYYLNTQ 68 (169)
T ss_pred CEEEECCCCCCHHHHHHHHHCCCCCCCCCCCC----CCEEEEEECCEEEEEEECCCCCCCC--------HHHHHHCCCCC
T ss_conf 99999989998899999995799689778688----1669999898899999899972446--------36787555762
Q ss_pred CEEECCCCCCHHHHH-------------HHCCCCCCCCCCCCCCCCCCCHH-----------------HHHHHHHHHHHH
Q ss_conf 102013589856634-------------31289853222233344654200-----------------000133332323
Q gi|254780809|r 301 LILLLKEINSKKEIS-------------FPKNIDFIFIGTKSDLYSTYTEE-----------------YDHLISSFTGEG 350 (440)
Q Consensus 301 lil~v~D~~~~~~~~-------------~~~~~~~i~V~NK~Dl~~~~~~~-----------------~~~~ISaktg~G 350 (440)
.++||+|.++...+. ..+++|++++.||+|+....... ....+||+||+|
T Consensus 69 ~iIfVvDssd~~~~~ea~~~l~~ll~~~~~~~~piLIlaNK~Dl~~~~~~~ei~~~l~l~~~~~~~~~~i~~~SA~tG~G 148 (169)
T cd04158 69 AVVFVVDSSHRDRVSEAHSELAKLLTEKELRDALLLIFANKQDVAGALSVEEMTELLSLHKLCCGRSWYIQGCDARSGMG 148 (169)
T ss_pred EEEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCHHHHHHHHCCHHHCCCCCEEEEEEECCCCCC
T ss_conf 79999986306779999999999971275379849999735567779899999998570545269962999555727959
Q ss_pred HHHHHHHHHHHHHH
Q ss_conf 58999999999632
Q gi|254780809|r 351 LEELINKIKSILSN 364 (440)
Q Consensus 351 i~~L~~~I~~~l~~ 364 (440)
+++..+-|.+.+-.
T Consensus 149 i~e~~~WL~~~ii~ 162 (169)
T cd04158 149 LYEGLDWLSRQLVA 162 (169)
T ss_pred HHHHHHHHHHHHHH
T ss_conf 89999999999986
No 103
>cd04150 Arf1_5_like Arf1-Arf5-like subfamily. This subfamily contains Arf1, Arf2, Arf3, Arf4, Arf5, and related proteins. Arfs1-5 are soluble proteins that are crucial for assembling coat proteins during vesicle formation. Each contains an N-terminal myristoylated amphipathic helix that is folded into the protein in the GDP-bound state. GDP/GTP exchange exposes the helix, which anchors to the membrane. Following GTP hydrolysis, the helix dissociates from the membrane and folds back into the protein. A general feature of Arf1-5 signaling may be the cooperation of two Arfs at the same site. Arfs1-5 are generally considered to be interchangeable in function and location, but some specific functions have been assigned. Arf1 localizes to the early/cis-Golgi, where it is activated by GBF1 and recruits the coat protein COPI. It also localizes to the trans-Golgi network (TGN), where it is activated by BIG1/BIG2 and recruits the AP1, AP3, AP4, and GGA proteins. Humans, but not rodents
Probab=99.43 E-value=5.6e-13 Score=109.83 Aligned_cols=128 Identities=18% Similarity=0.295 Sum_probs=92.1
Q ss_pred CCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCCEEECCCCCCCCCEEEEEEECCHHCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 30243114663188899998552000234546872110001245683589995081000241035666678889985030
Q gi|254780809|r 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299 (440)
Q Consensus 220 ~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTTRD~i~~~~~i~g~~~~l~DTaGir~t~d~IE~~GI~ra~~~i~~a 299 (440)
+||+++|.+||||+||++++...+-. +..| |-..-...+...++.+.+.||||-..-. .......+.|
T Consensus 1 ~KililG~~~sGKTsll~~l~~~~~~--~~~p--T~g~~~~~~~~~~~~l~iwD~~G~~~~r--------~l~~~Y~~~a 68 (159)
T cd04150 1 MRILMVGLDAAGKTTILYKLKLGEIV--TTIP--TIGFNVETVEYKNISFTVWDVGGQDKIR--------PLWRHYFQNT 68 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCC--CCCC--CCCCCEEEEEECCEEEEEEECCCCCCCC--------HHHHHHCCCC
T ss_conf 99999999999989999999729967--7589--6870179999898999999789972146--------5678647687
Q ss_pred CCEEECCCCCCHHHHH-------------HHCCCCCCCCCCCCCCCCCCCHH----------------HHHHHHHHHHHH
Q ss_conf 1102013589856634-------------31289853222233344654200----------------000133332323
Q gi|254780809|r 300 DLILLLKEINSKKEIS-------------FPKNIDFIFIGTKSDLYSTYTEE----------------YDHLISSFTGEG 350 (440)
Q Consensus 300 Dlil~v~D~~~~~~~~-------------~~~~~~~i~V~NK~Dl~~~~~~~----------------~~~~ISaktg~G 350 (440)
+.++||+|.++...+. ...+.|++++.||+|+....... ..+.+||+||+|
T Consensus 69 ~~iI~VvD~sd~~~~~~~~~~l~~~l~~~~~~~~pili~~NK~Dl~~~~~~~ei~~~l~l~~~~~~~~~i~~~SA~tG~G 148 (159)
T cd04150 69 QGLIFVVDSNDRERIGEAREELQRMLNEDELRDAVLLVFANKQDLPNAMSAAEVTDKLGLHSLRNRNWYIQATCATSGDG 148 (159)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHCCHHHCCCEEEEEEECCCCCCCCCHHHHHHHHCHHHHHCCCEEEEEEECCCCCC
T ss_conf 38999997777789999999999996235336982999997566778989999999968666637985999826867939
Q ss_pred HHHHHHHHH
Q ss_conf 589999999
Q gi|254780809|r 351 LEELINKIK 359 (440)
Q Consensus 351 i~~L~~~I~ 359 (440)
+++..+-|.
T Consensus 149 v~e~f~WL~ 157 (159)
T cd04150 149 LYEGLDWLS 157 (159)
T ss_pred HHHHHHHHH
T ss_conf 899999985
No 104
>cd04123 Rab21 Rab21 subfamily. The localization and function of Rab21 are not clearly defined, with conflicting data reported. Rab21 has been reported to localize in the ER in human intestinal epithelial cells, with partial colocalization with alpha-glucosidase, a late endosomal/lysosomal marker. More recently, Rab21 was shown to colocalize with and affect the morphology of early endosomes. In Dictyostelium, GTP-bound Rab21, together with two novel LIM domain proteins, LimF and ChLim, has been shown to regulate phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site
Probab=99.43 E-value=5.4e-13 Score=109.95 Aligned_cols=133 Identities=25% Similarity=0.337 Sum_probs=94.2
Q ss_pred CCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCCEE-ECCCCCCCCCE--EEEEEECCHHCCCCHHHHHHHHHHHHHHH
Q ss_conf 3024311466318889999855200023454687211-00012456835--89995081000241035666678889985
Q gi|254780809|r 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRD-VLTIDLDLEGY--LVKISDTAGIRETDDIVEKEGIKRTFLEV 296 (440)
Q Consensus 220 ~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTTRD-~i~~~~~i~g~--~~~l~DTaGir~t~d~IE~~GI~ra~~~i 296 (440)
+||+++|.++||||||++++++.. -..+++-|+.+ .....+.++|. .+.+.||||-.+-. . ......
T Consensus 1 ~Ki~vvG~~~vGKTsli~r~~~~~--f~~~~~~ti~~~~~~k~i~~~~~~~~l~iwDt~G~~~~~----~----~~~~~~ 70 (162)
T cd04123 1 FKVVLLGEGRVGKTSLVLRYVENK--FNEKHESTTQASFFQKTVNIGGKRIDLAIWDTAGQERYH----A----LGPIYY 70 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHHCC--CCCCCCCCCEEEEEEEEEEECCEEEEEEEEECCCCCCCC----C----CCHHHE
T ss_conf 989999999967999999998398--998767752647999999999999999999589973035----5----631330
Q ss_pred HHHCCEEECCCCCCHHHHHH------------HCCCCCCCCCCCCCCCCCCCHH-------------HHHHHHHHHHHHH
Q ss_conf 03011020135898566343------------1289853222233344654200-------------0001333323235
Q gi|254780809|r 297 ENADLILLLKEINSKKEISF------------PKNIDFIFIGTKSDLYSTYTEE-------------YDHLISSFTGEGL 351 (440)
Q Consensus 297 ~~aDlil~v~D~~~~~~~~~------------~~~~~~i~V~NK~Dl~~~~~~~-------------~~~~ISaktg~Gi 351 (440)
+.||.+++|+|.+++..+.. ..+.|+++|.||+||.....-. .-+.+||++|.|+
T Consensus 71 ~~a~~~ilv~d~t~~~Sf~~i~~~~~~i~~~~~~~~~iilvgnK~Dl~~~r~v~~~e~~~~a~~~~~~y~e~Sak~g~nV 150 (162)
T cd04123 71 RDADGAILVYDITDADSFQKVKKWIKELKQMRGNNISLVIVGNKIDLERQRVVSKSEAEEYAKSVGAKHFETSAKTGKGI 150 (162)
T ss_pred ECCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCHHHCCCCHHHHHHHHHHCCCEEEEEECCCCCCH
T ss_conf 11445799963899899999999999999876999746866332132540888999999999982998999812788198
Q ss_pred HHHHHHHHHHH
Q ss_conf 89999999996
Q gi|254780809|r 352 EELINKIKSIL 362 (440)
Q Consensus 352 ~~L~~~I~~~l 362 (440)
+++.+.|.+.+
T Consensus 151 ~e~F~~l~~~i 161 (162)
T cd04123 151 EELFLSLAKRM 161 (162)
T ss_pred HHHHHHHHHHH
T ss_conf 99999999986
No 105
>cd04117 Rab15 Rab15 subfamily. Rab15 colocalizes with the transferrin receptor in early endosome compartments, but not with late endosomal markers. It codistributes with Rab4 and Rab5 on early/sorting endosomes, and with Rab11 on pericentriolar recycling endosomes. It is believed to function as an inhibitory GTPase that regulates distinct steps in early endocytic trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to
Probab=99.43 E-value=6.8e-13 Score=109.24 Aligned_cols=133 Identities=21% Similarity=0.340 Sum_probs=94.6
Q ss_pred CCEEEECCCCCCHHHHHHHHHCCHHCCCCC-CCCCCEEECCCCCCCCCE--EEEEEECCHHCCCCHHHHHHHHHHHHHHH
Q ss_conf 302431146631888999985520002345-468721100012456835--89995081000241035666678889985
Q gi|254780809|r 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTD-IPGTTRDVLTIDLDLEGY--LVKISDTAGIRETDDIVEKEGIKRTFLEV 296 (440)
Q Consensus 220 ~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~-~~GTTRD~i~~~~~i~g~--~~~l~DTaGir~t~d~IE~~GI~ra~~~i 296 (440)
+||+++|.++||||||+++++..+- ..+ .|-..-|.....+.++|. .+.+.||||--.-.. .+....
T Consensus 1 ~KIvllGd~~VGKTsli~r~~~~~f--~~~~~~Tig~~~~~k~v~~~~~~i~l~iwDtaGqe~~~~--------~~~~y~ 70 (161)
T cd04117 1 FRLLLIGDSGVGKTCLLCRFTDNEF--HSSHISTIGVDFKMKTIEVDGIKVRIQIWDTAGQERYQT--------ITKQYY 70 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCC--CCCCCCCCEEEEEEEEEEECCEEEEEEEEECCCCCCCCC--------CHHHHH
T ss_conf 9899999499858999999942998--998788720898899999999999999997999602363--------558887
Q ss_pred HHHCCEEECCCCCCHHHHHH------------HCCCCCCCCCCCCCCCCCCCHH-------------HHHHHHHHHHHHH
Q ss_conf 03011020135898566343------------1289853222233344654200-------------0001333323235
Q gi|254780809|r 297 ENADLILLLKEINSKKEISF------------PKNIDFIFIGTKSDLYSTYTEE-------------YDHLISSFTGEGL 351 (440)
Q Consensus 297 ~~aDlil~v~D~~~~~~~~~------------~~~~~~i~V~NK~Dl~~~~~~~-------------~~~~ISaktg~Gi 351 (440)
..||.+++|+|.+++..... .++.|.++|.||+|+....... .-+.+||++|.|+
T Consensus 71 r~a~~~ilvyDvt~~~Sf~~l~~w~~~i~~~~~~~~~~ilVgNK~Dl~~~r~v~~~~~~~~a~~~~~~~~etSAk~~~nV 150 (161)
T cd04117 71 RRAQGIFLVYDISSERSYQHIMKWVSDVDEYAPEGVQKILIGNKADEEQKRQVGDEQGNKLAKEYGMDFFETSACTNSNI 150 (161)
T ss_pred HHHCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHCCCCCHHHHHHHHHHCCCEEEEECCCCCCCH
T ss_conf 64168899614898899999999999999878998649998732787862779999999999986997999677898298
Q ss_pred HHHHHHHHHHH
Q ss_conf 89999999996
Q gi|254780809|r 352 EELINKIKSIL 362 (440)
Q Consensus 352 ~~L~~~I~~~l 362 (440)
+++.+.|.+++
T Consensus 151 ~e~F~~l~~~i 161 (161)
T cd04117 151 KESFTRLTELV 161 (161)
T ss_pred HHHHHHHHHHC
T ss_conf 99999999649
No 106
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=99.43 E-value=6.6e-13 Score=109.33 Aligned_cols=133 Identities=26% Similarity=0.330 Sum_probs=93.0
Q ss_pred CCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCCEEECCCCCCCCCE--EEEEEECCHHCCCCHHHHHHHHHHHHHHHH
Q ss_conf 302431146631888999985520002345468721100012456835--899950810002410356666788899850
Q gi|254780809|r 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY--LVKISDTAGIRETDDIVEKEGIKRTFLEVE 297 (440)
Q Consensus 220 ~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTTRD~i~~~~~i~g~--~~~l~DTaGir~t~d~IE~~GI~ra~~~i~ 297 (440)
+||+++|.++||||||+++++...= ..++.-|.-|.....+.++|. .+.+.||||-.+-. ........
T Consensus 2 ~KvvlvGd~~VGKTsli~r~~~~~F--~~~y~~Ti~~~~~k~~~i~~~~~~l~iwDtaG~e~~~--------~l~~~~~~ 71 (162)
T cd04138 2 YKLVVVGAGGVGKSALTIQLIQNHF--VDEYDPTIEDSYRKQVVIDGETCLLDILDTAGQEEYS--------AMRDQYMR 71 (162)
T ss_pred EEEEEECCCCCCHHHHHHHHHHCCC--CCCCCCCCCCEEEEEEEECCEEEEEEEEECCCCCCCC--------HHHHHHHC
T ss_conf 3999989999889999999983928--8756885552799999999999999999799860111--------47898715
Q ss_pred HHCCEEECCCCCCHHHHHH-------------HCCCCCCCCCCCCCCCCCCCHH------------HHHHHHHHHHHHHH
Q ss_conf 3011020135898566343-------------1289853222233344654200------------00013333232358
Q gi|254780809|r 298 NADLILLLKEINSKKEISF-------------PKNIDFIFIGTKSDLYSTYTEE------------YDHLISSFTGEGLE 352 (440)
Q Consensus 298 ~aDlil~v~D~~~~~~~~~-------------~~~~~~i~V~NK~Dl~~~~~~~------------~~~~ISaktg~Gi~ 352 (440)
.||.+++|+|.+++..+.. ..+.|+++|.||+||.+..... .-+.+||++|.|++
T Consensus 72 ~a~~~ilvydvt~~~Sf~~v~~w~~~i~~~~~~~~~piilVgNK~Dl~~r~V~~~e~~~~a~~~~~~f~E~SAk~~~nV~ 151 (162)
T cd04138 72 TGEGFLCVFAINSRKSFEDIHTYREQIKRVKDSDDVPMVLVGNKCDLAARTVSSRQGQDLAKSYGIPYIETSAKTRQGVE 151 (162)
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCHHHCCCCHHHHHHHHHHCCCEEEEECCCCCCCHH
T ss_conf 78779999617988999989999999998548888549999765356455588999999999809989997389985989
Q ss_pred HHHHHHHHHH
Q ss_conf 9999999996
Q gi|254780809|r 353 ELINKIKSIL 362 (440)
Q Consensus 353 ~L~~~I~~~l 362 (440)
++.+.+.+.+
T Consensus 152 e~F~~l~~~I 161 (162)
T cd04138 152 EAFYTLVREI 161 (162)
T ss_pred HHHHHHHHHC
T ss_conf 9999999963
No 107
>cd00882 Ras_like_GTPase Ras-like GTPase superfamily. The Ras-like superfamily of small GTPases consists of several families with an extremely high degree of structural and functional similarity. The Ras superfamily is divided into at least four families in eukaryotes: the Ras, Rho, Rab, and Sar1/Arf families. This superfamily also includes proteins like the GTP translation factors, Era-like GTPases, and G-alpha chain of the heterotrimeric G proteins. Members of the Ras superfamily regulate a wide variety of cellular functions: the Ras family regulates gene expression, the Rho family regulates cytoskeletal reorganization and gene expression, the Rab and Sar1/Arf families regulate vesicle trafficking, and the Ran family regulates nucleocytoplasmic transport and microtubule organization. The GTP translation factor family regulate initiation, elongation, termination, and release in translation, and the Era-like GTPase family regulates cell division, sporulation, and DNA replication. Memb
Probab=99.43 E-value=3.3e-13 Score=111.42 Aligned_cols=127 Identities=28% Similarity=0.381 Sum_probs=94.2
Q ss_pred EECCCCCCHHHHHHHHHCCHHCCCCCCCCCCEEECCCCCCCCCE--EEEEEECCHHCCCCHHHHHHHHHHHHHHHHHHCC
Q ss_conf 31146631888999985520002345468721100012456835--8999508100024103566667888998503011
Q gi|254780809|r 224 ILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY--LVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301 (440)
Q Consensus 224 i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTTRD~i~~~~~i~g~--~~~l~DTaGir~t~d~IE~~GI~ra~~~i~~aDl 301 (440)
++|.||||||||+|++++.. -..+..|.|+.|.....+..++. .+.+.||+|..+.... .......+|.
T Consensus 1 vvG~~~~GKSsl~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~D~~g~~~~~~~--------~~~~~~~~~~ 71 (157)
T cd00882 1 VVGDSGVGKTSLLNRLLGGE-FVPEEYETTIIDFYSKTIEVDGKKVKLQIWDTAGQERFRSL--------RRLYYRGADG 71 (157)
T ss_pred CCCCCCCCHHHHHHHHHCCC-CCCCCCCCCEEEEEEEEEEECCEEEEEEEEECCCCHHHHHH--------HHHHHHHCCE
T ss_conf 92949968899999997198-88764687157899999999999999999985895115678--------9999753579
Q ss_pred EEECCCCCCHHHHH-------------HHCCCCCCCCCCCCCCCCCCCHH--------------HHHHHHHHHHHHHHHH
Q ss_conf 02013589856634-------------31289853222233344654200--------------0001333323235899
Q gi|254780809|r 302 ILLLKEINSKKEIS-------------FPKNIDFIFIGTKSDLYSTYTEE--------------YDHLISSFTGEGLEEL 354 (440)
Q Consensus 302 il~v~D~~~~~~~~-------------~~~~~~~i~V~NK~Dl~~~~~~~--------------~~~~ISaktg~Gi~~L 354 (440)
+++|+|.+++.... ...+.|+++|.||+|+....... ..+.+||++|.|++++
T Consensus 72 ~i~v~d~~~~~s~~~~~~~~~~~~~~~~~~~~~iiiv~nK~Dl~~~~~~~~~~~~~~~~~~~~~~~~~~Sa~~~~~i~~l 151 (157)
T cd00882 72 IILVYDVTDRESFENVKEWLLLILINKEGENIPIILVGNKIDLPEERVVSEEELAEQLAKELGVPYFETSAKTGENVEEL 151 (157)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHCCCCCHHHHHHHHHHHCCCEEEEECCCCCCCHHHH
T ss_conf 99998658888899999999999997525898499998535615406688999999999878986999847888399999
Q ss_pred HHHHH
Q ss_conf 99999
Q gi|254780809|r 355 INKIK 359 (440)
Q Consensus 355 ~~~I~ 359 (440)
.+.|.
T Consensus 152 ~~~i~ 156 (157)
T cd00882 152 FEELA 156 (157)
T ss_pred HHHHH
T ss_conf 99985
No 108
>cd01867 Rab8_Rab10_Rab13_like Rab8/Sec4/Ypt2. Rab8/Sec4/Ypt2 are known or suspected to be involved in post-Golgi transport to the plasma membrane. It is likely that these Rabs have functions that are specific to the mammalian lineage and have no orthologs in plants. Rab8 modulates polarized membrane transport through reorganization of actin and microtubules, induces the formation of new surface extensions, and has an important role in directed membrane transport to cell surfaces. The Ypt2 gene of the fission yeast Schizosaccharomyces pombe encodes a member of the Ypt/Rab family of small GTP-binding proteins, related in sequence to Sec4p of Saccharomyces cerevisiae but closer to mammalian Rab8. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhi
Probab=99.42 E-value=1.2e-12 Score=107.62 Aligned_cols=134 Identities=21% Similarity=0.263 Sum_probs=93.3
Q ss_pred CCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCC-CEEECCCCCCCCCE--EEEEEECCHHCCCCHHHHHHHHHHHHHHH
Q ss_conf 3024311466318889999855200023454687-21100012456835--89995081000241035666678889985
Q gi|254780809|r 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGT-TRDVLTIDLDLEGY--LVKISDTAGIRETDDIVEKEGIKRTFLEV 296 (440)
Q Consensus 220 ~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GT-TRD~i~~~~~i~g~--~~~l~DTaGir~t~d~IE~~GI~ra~~~i 296 (440)
+||+++|.++||||||+++++...- ...+.-| -.|.....+.++|. .+.+.||||-..-. .......
T Consensus 4 ~KivlvGd~~vGKTsli~r~~~~~f--~~~~~~Tig~~~~~k~v~~~~~~i~l~iwDt~G~e~~~--------~~~~~y~ 73 (167)
T cd01867 4 FKLLLIGDSGVGKSCLLLRFSEDSF--NPSFISTIGIDFKIRTIELDGKKIKLQIWDTAGQERFR--------TITTAYY 73 (167)
T ss_pred EEEEEECCCCCCHHHHHHHHHHCCC--CCCCCCCCCEEEEEEEEEECCEEEEEEEEECCCCCCHH--------HHHHHHH
T ss_conf 9999999999788999999960999--99868986468899999999999999999899970011--------6679985
Q ss_pred HHHCCEEECCCCCCHHHHHH------------HCCCCCCCCCCCCCCCCCCCHH-------------HHHHHHHHHHHHH
Q ss_conf 03011020135898566343------------1289853222233344654200-------------0001333323235
Q gi|254780809|r 297 ENADLILLLKEINSKKEISF------------PKNIDFIFIGTKSDLYSTYTEE-------------YDHLISSFTGEGL 351 (440)
Q Consensus 297 ~~aDlil~v~D~~~~~~~~~------------~~~~~~i~V~NK~Dl~~~~~~~-------------~~~~ISaktg~Gi 351 (440)
..||.+++|+|.+++..... ..+.|.++|.||+||.+..... .-+.+|||+|.|+
T Consensus 74 ~~a~~~ilvfdit~~~Sf~~~~~w~~~i~~~~~~~~~~ilVgNK~Dl~~~r~v~~~e~~~~a~~~~~~~~e~SAktg~nI 153 (167)
T cd01867 74 RGAMGIILVYDITDEKSFENIRNWMRNIEEHASEDVERMLVGNKCDMEEKRVVSKEEGEALADEYGIKFLETSAKANINV 153 (167)
T ss_pred HHCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCHHCCCCCHHHHHHHHHHHCCEEEEECCCCCCCH
T ss_conf 65058899556898799999999999999866999705764212450230779999999999980996999822579078
Q ss_pred HHHHHHHHHHHH
Q ss_conf 899999999963
Q gi|254780809|r 352 EELINKIKSILS 363 (440)
Q Consensus 352 ~~L~~~I~~~l~ 363 (440)
+++.+.|.+.+.
T Consensus 154 ~e~F~~l~~~i~ 165 (167)
T cd01867 154 EEAFFTLAKDIK 165 (167)
T ss_pred HHHHHHHHHHHH
T ss_conf 999999999997
No 109
>cd01863 Rab18 Rab18 subfamily. Mammalian Rab18 is implicated in endocytic transport and is expressed most highly in polarized epithelial cells. However, trypanosomal Rab, TbRAB18, is upregulated in the BSF (Blood Stream Form) stage and localized predominantly to elements of the Golgi complex. In human and mouse cells, Rab18 has been identified in lipid droplets, organelles that store neutral lipids. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of mos
Probab=99.42 E-value=6.1e-13 Score=109.57 Aligned_cols=133 Identities=22% Similarity=0.287 Sum_probs=92.9
Q ss_pred CCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCC-CEEECCCCCCCCC--EEEEEEECCHHCCCCHHHHHHHHHHHHHHH
Q ss_conf 3024311466318889999855200023454687-2110001245683--589995081000241035666678889985
Q gi|254780809|r 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGT-TRDVLTIDLDLEG--YLVKISDTAGIRETDDIVEKEGIKRTFLEV 296 (440)
Q Consensus 220 ~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GT-TRD~i~~~~~i~g--~~~~l~DTaGir~t~d~IE~~GI~ra~~~i 296 (440)
+||+++|.++||||||++++++.+- ...++.| ..|+....+.++| +.+.+.||||-.+-... .....
T Consensus 1 ~KivvvG~~~vGKTsli~r~~~~~f--~~~~~~ti~~~~~~~~~~~~~~~~~l~iwDt~g~~~~~~~--------~~~~~ 70 (161)
T cd01863 1 LKILLIGDSGVGKSSLLLRFTDDTF--DPDLAATIGVDFKVKTLTVDGKKVKLAIWDTAGQERFRTL--------TSSYY 70 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHHCCC--CCCCCCCCCCCCEEEEEEECCEEEEEEEEECCCCCCCCCC--------HHHHH
T ss_conf 9899999799579999999963999--9984873133423899999999999999999998423534--------22441
Q ss_pred HHHCCEEECCCCCCHHHHHHH-------------CCCCCCCCCCCCCCCCCCCHH------------HHHHHHHHHHHHH
Q ss_conf 030110201358985663431-------------289853222233344654200------------0001333323235
Q gi|254780809|r 297 ENADLILLLKEINSKKEISFP-------------KNIDFIFIGTKSDLYSTYTEE------------YDHLISSFTGEGL 351 (440)
Q Consensus 297 ~~aDlil~v~D~~~~~~~~~~-------------~~~~~i~V~NK~Dl~~~~~~~------------~~~~ISaktg~Gi 351 (440)
..||.+++|+|.+++..+... .+.|+++|.||+|+.+..... .-+.+||++|.|+
T Consensus 71 ~~a~~~ilvfd~~~~~Sf~~i~~~~~~i~~~~~~~~~~~ilVgnK~D~~~~~v~~~~~~~~a~~~~~~y~e~Sak~g~nV 150 (161)
T cd01863 71 RGAQGVILVYDVTRRDTFTNLETWLNELETYSTNNDIVKMLVGNKIDKENREVTREEGLKFARKHNMLFIETSAKTRDGV 150 (161)
T ss_pred HHCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCH
T ss_conf 32153489976782656999999999999856888873788731044000689999999999986999999715868159
Q ss_pred HHHHHHHHHHH
Q ss_conf 89999999996
Q gi|254780809|r 352 EELINKIKSIL 362 (440)
Q Consensus 352 ~~L~~~I~~~l 362 (440)
+++.+.|.+.+
T Consensus 151 ~~~F~~l~~~i 161 (161)
T cd01863 151 QQAFEELVEKI 161 (161)
T ss_pred HHHHHHHHHHC
T ss_conf 99999999709
No 110
>cd04151 Arl1 Arl1 subfamily. Arl1 (Arf-like 1) localizes to the Golgi complex, where it is believed to recruit effector proteins to the trans-Golgi network. Like most members of the Arf family, Arl1 is myristoylated at its N-terminal helix and mutation of the myristoylation site disrupts Golgi targeting. In humans, the Golgi-localized proteins golgin-97 and golgin-245 have been identified as Arl1 effectors. Golgins are large coiled-coil proteins found in the Golgi, and these golgins contain a C-terminal GRIP domain, which is the site of Arl1 binding. Additional Arl1 effectors include the GARP (Golgi-associated retrograde protein)/VFT (Vps53) vesicle-tethering complex and Arfaptin 2. Arl1 is not required for exocytosis, but appears necessary for trafficking from the endosomes to the Golgi. In Drosophila zygotes, mutation of Arl1 is lethal, and in the host-bloodstream form of Trypanosoma brucei, Arl1 is essential for viability.
Probab=99.42 E-value=5.5e-13 Score=109.90 Aligned_cols=127 Identities=24% Similarity=0.310 Sum_probs=90.6
Q ss_pred CEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCCEEECCCCCCCCCEEEEEEECCHHCCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf 02431146631888999985520002345468721100012456835899950810002410356666788899850301
Q gi|254780809|r 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 (440)
Q Consensus 221 ~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTTRD~i~~~~~i~g~~~~l~DTaGir~t~d~IE~~GI~ra~~~i~~aD 300 (440)
||+++|.+|||||||++++...+. +...| |-..-...+..+++.+.+.||||-..-. .........+|
T Consensus 1 Kil~lG~~~~GKTsll~~~~~~~~--~~~~p--Tig~~~~~i~~~~~~~~iwD~~G~e~~r--------~~~~~y~~~~~ 68 (158)
T cd04151 1 RILILGLDNAGKTTILYRLQLGEV--VTTIP--TIGFNVETVTYKNLKFQVWDLGGQTSIR--------PYWRCYYSNTD 68 (158)
T ss_pred CEEEECCCCCCHHHHHHHHHCCCC--CCCCC--CCCCCEEEEEECCEEEEEEECCCCCCCC--------HHHHHHCCCCC
T ss_conf 999999999989999999970996--77578--4882469999898899999679862446--------27887466788
Q ss_pred CEEECCCCCCHHHHH-------------HHCCCCCCCCCCCCCCCCCCCHH----------------HHHHHHHHHHHHH
Q ss_conf 102013589856634-------------31289853222233344654200----------------0001333323235
Q gi|254780809|r 301 LILLLKEINSKKEIS-------------FPKNIDFIFIGTKSDLYSTYTEE----------------YDHLISSFTGEGL 351 (440)
Q Consensus 301 lil~v~D~~~~~~~~-------------~~~~~~~i~V~NK~Dl~~~~~~~----------------~~~~ISaktg~Gi 351 (440)
.++||+|.+++..+. ..++.|++++.||+|+.+..... ..+.+||+||+|+
T Consensus 69 ~ii~VvD~sd~~~~~~~~~~l~~~l~~~~~~~~piliv~NK~Dl~~~~~~~~i~~~l~l~~~~~~~~~~~~tSA~tG~gV 148 (158)
T cd04151 69 AIIYVVDSTDRDRLGTAKEELHAMLEEEELKGAVLLVFANKQDMPGALSEAEISEKLGLSELKDRTWSIFKTSAIKGEGL 148 (158)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCH
T ss_conf 99999745787899999999999983465369819999976677657799999999859874169968999678789399
Q ss_pred HHHHHHHH
Q ss_conf 89999999
Q gi|254780809|r 352 EELINKIK 359 (440)
Q Consensus 352 ~~L~~~I~ 359 (440)
++..+-|.
T Consensus 149 ~e~f~wL~ 156 (158)
T cd04151 149 DEGMDWLV 156 (158)
T ss_pred HHHHHHHH
T ss_conf 99999985
No 111
>cd04146 RERG_RasL11_like RERG/RasL11-like subfamily. RERG (Ras-related and Estrogen- Regulated Growth inhibitor) and Ras-like 11 are members of a novel subfamily of Ras that were identified based on their behavior in breast and prostate tumors, respectively. RERG expression was decreased or lost in a significant fraction of primary human breast tumors that lack estrogen receptor and are correlated with poor clinical prognosis. Elevated RERG expression correlated with favorable patient outcome in a breast tumor subtype that is positive for estrogen receptor expression. In contrast to most Ras proteins, RERG overexpression inhibited the growth of breast tumor cells in vitro and in vivo. RasL11 was found to be ubiquitously expressed in human tissue, but down-regulated in prostate tumors. Both RERG and RasL11 lack the C-terminal CaaX prenylation motif, where a = an aliphatic amino acid and X = any amino acid, and are localized primarily in the cytoplasm. Both are believed to have tu
Probab=99.42 E-value=6.5e-13 Score=109.39 Aligned_cols=134 Identities=22% Similarity=0.337 Sum_probs=93.1
Q ss_pred CEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCCEEECCCCCCCCCE--EEEEEECCHHCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 02431146631888999985520002345468721100012456835--8999508100024103566667888998503
Q gi|254780809|r 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY--LVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298 (440)
Q Consensus 221 ~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTTRD~i~~~~~i~g~--~~~l~DTaGir~t~d~IE~~GI~ra~~~i~~ 298 (440)
||+++|.++||||||+++++... -..++.-|+-|.....+.++|. .+.+.||||--.... ......+..
T Consensus 1 Kiv~vGd~~VGKTsli~rf~~~~--f~~~y~~T~~~~~~~~~~v~~~~~~l~iwDtaG~e~~~~-------~~~~~~~~~ 71 (165)
T cd04146 1 KIAVLGASGVGKSALVVRFLTKR--FIGEYDPNLESLYSRQVTIDGEQVSLEILDTAGQQQADT-------EQLERSIRW 71 (165)
T ss_pred CEEEECCCCCCHHHHHHHHHHCC--CCCCCCCCCCCEEEEEEEECCEEEEEEEEECCCCCCCCH-------HHHHHHCCC
T ss_conf 99999989977899999997498--998759955630579999999999999992898501220-------125543045
Q ss_pred HCCEEECCCCCCHHHHHH--------------HCCCCCCCCCCCCCCCCCCCHH-------------HHHHHHHHHH-HH
Q ss_conf 011020135898566343--------------1289853222233344654200-------------0001333323-23
Q gi|254780809|r 299 ADLILLLKEINSKKEISF--------------PKNIDFIFIGTKSDLYSTYTEE-------------YDHLISSFTG-EG 350 (440)
Q Consensus 299 aDlil~v~D~~~~~~~~~--------------~~~~~~i~V~NK~Dl~~~~~~~-------------~~~~ISaktg-~G 350 (440)
||.+++|+|.+++..... ..+.|+++|.||+||.+...-. .-+.+||++| +|
T Consensus 72 a~~~ilvydit~~~Sf~~~~~~~~~i~~~~~~~~~~piilVGNK~DL~~~r~Vs~ee~~~~a~~~~~~f~E~SAk~~~~~ 151 (165)
T cd04146 72 ADGFVLVYSITDRSSFDEISQLKQLIREIKKRDREIPVILVGNKADLLHYRQVSTEEGEKLASELGCLFFEVSAAEDYDG 151 (165)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHCCCEEEEEECCCCCCC
T ss_conf 87899998658889999999999999998466999539984455452103677999999999981998999752087826
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 5899999999963
Q gi|254780809|r 351 LEELINKIKSILS 363 (440)
Q Consensus 351 i~~L~~~I~~~l~ 363 (440)
++++-+.+.+.+.
T Consensus 152 V~~~F~~l~~~i~ 164 (165)
T cd04146 152 VHSVFHELCREVR 164 (165)
T ss_pred HHHHHHHHHHHHC
T ss_conf 9999999999966
No 112
>PRK09602 translation-associated GTPase; Reviewed
Probab=99.42 E-value=3.1e-13 Score=111.59 Aligned_cols=89 Identities=24% Similarity=0.263 Sum_probs=68.8
Q ss_pred CCCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCCEEECCCCC-----------C-------------CCCEEEEEEEC
Q ss_conf 23024311466318889999855200023454687211000124-----------5-------------68358999508
Q gi|254780809|r 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL-----------D-------------LEGYLVKISDT 274 (440)
Q Consensus 219 g~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTTRD~i~~~~-----------~-------------i~g~~~~l~DT 274 (440)
++++.|+|.||||||||||+|++... -+.++|.||.|...+.. . ..-.|+.|+|.
T Consensus 2 ~lk~GIVGLPNvGKSTlFnaLT~~~~-~~aNyPF~TIePn~Gi~~v~v~~pd~~l~~~~~~~~~~~~~~~~~vpie~vDI 80 (396)
T PRK09602 2 MIQIGLVGKPNVGKSTFFSAATLADV-EIANYPFTTIDPNVGVAYVRVECPCKELGVKCNPRNGKCIDGVRFIPVELIDV 80 (396)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCC-CCCCCCCCCCCCCCCEEECCCCCCHHHHHHHCCCCCCCCCCCCEEEEEEEEEC
T ss_conf 83488888999988999999977998-64589988877843625233688436665430654221357733655899875
Q ss_pred CHHCCCCHHHHHHHHHHHHHHHHHHCCEEECCCCC
Q ss_conf 10002410356666788899850301102013589
Q gi|254780809|r 275 AGIRETDDIVEKEGIKRTFLEVENADLILLLKEIN 309 (440)
Q Consensus 275 aGir~t~d~IE~~GI~ra~~~i~~aDlil~v~D~~ 309 (440)
||+-+...+=|..| .+-+..+.++|.+++|++++
T Consensus 81 AGLVkGAS~GeGLG-NkFLs~IRevDaI~hVVr~~ 114 (396)
T PRK09602 81 AGLVPGAHEGRGLG-NQFLDDLRQADALIHVVDAS 114 (396)
T ss_pred CCCCCCCCCCCCCC-HHHHHHHHHCCEEEEEEECC
T ss_conf 55676501168760-89999887268799997535
No 113
>cd04148 RGK RGK subfamily. The RGK (Rem, Rem2, Rad, Gem/Kir) subfamily of Ras GTPases are expressed in a tissue-specific manner and are dynamically regulated by transcriptional and posttranscriptional mechanisms in response to environmental cues. RGK proteins bind to the beta subunit of L-type calcium channels, causing functional down-regulation of these voltage-dependent calcium channels, and either termination of calcium-dependent secretion or modulation of electrical conduction and contractile function. Inhibition of L-type calcium channels by Rem2 may provide a mechanism for modulating calcium-triggered exocytosis in hormone-secreting cells, and has been proposed to influence the secretion of insulin in pancreatic beta cells. RGK proteins also interact with and inhibit the Rho/Rho kinase pathway to modulate remodeling of the cytoskeleton. Two characteristics of RGK proteins cited in the literature are N-terminal and C-terminal extensions beyond the GTPase domain typical of Ra
Probab=99.42 E-value=1.4e-12 Score=107.09 Aligned_cols=134 Identities=17% Similarity=0.193 Sum_probs=92.2
Q ss_pred CCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCC-EEECCCCCCCCCEE--EEEEECCHHCCCCHHHHHHHHHHHHHHH
Q ss_conf 30243114663188899998552000234546872-11000124568358--9995081000241035666678889985
Q gi|254780809|r 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT-RDVLTIDLDLEGYL--VKISDTAGIRETDDIVEKEGIKRTFLEV 296 (440)
Q Consensus 220 ~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTT-RD~i~~~~~i~g~~--~~l~DTaGir~t~d~IE~~GI~ra~~~i 296 (440)
++|+++|.+.||||||+++++..+ -....++.|+ .|+-+..+.++|.+ +.+.||+|--.. .+..-..
T Consensus 1 yKVvllGd~gVGKTSLi~rf~~~~-f~~~~y~~t~~~d~~~k~v~vd~~~~~l~i~Dt~g~e~~---------~~~~~~~ 70 (221)
T cd04148 1 YRVVMLGSPGVGKSSLASQFTSGE-YDDHAYDASGDDDTYERTVSVDGEESTLVVIDHWEQEMW---------TEDSCMQ 70 (221)
T ss_pred CEEEEECCCCCHHHHHHHHHHHCC-CCCCCCCCCCCEEEEEEEEEECCEEEEEEEEECCCCHHH---------HHHHHHH
T ss_conf 979999989970999999998198-698667874424889999999999989999989873126---------6665653
Q ss_pred HHHCCEEECCCCCCHHHHHH-------------HCCCCCCCCCCCCCCCCCCCHH-------------HHHHHHHHHHHH
Q ss_conf 03011020135898566343-------------1289853222233344654200-------------000133332323
Q gi|254780809|r 297 ENADLILLLKEINSKKEISF-------------PKNIDFIFIGTKSDLYSTYTEE-------------YDHLISSFTGEG 350 (440)
Q Consensus 297 ~~aDlil~v~D~~~~~~~~~-------------~~~~~~i~V~NK~Dl~~~~~~~-------------~~~~ISaktg~G 350 (440)
..+|.+++|+|.+++..+.. ..+.|+|+|.||+||.....-. .-+.+||++|.|
T Consensus 71 ~~ada~ilVYdvtdr~SF~~~~~~~~~l~~~~~~~~~piILVGNK~DL~~~R~Vs~eEg~~~A~~~~~~F~EtSAk~~~N 150 (221)
T cd04148 71 YQGDAFVVVYSVTDRSSFERASELRIQLRRNRQLEDRPIILVGNKSDLARSREVSVQEGRACAVVFDCKFIETSAGLQHN 150 (221)
T ss_pred HCCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCHHHHCCCCHHHHHHHHHHCCCEEEECCCCCCCC
T ss_conf 06868999996466778888999999999864899951999853566686389999999999998599899945799949
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 5899999999963
Q gi|254780809|r 351 LEELINKIKSILS 363 (440)
Q Consensus 351 i~~L~~~I~~~l~ 363 (440)
++++.+.|...+-
T Consensus 151 V~elF~~lvrqIr 163 (221)
T cd04148 151 VDELLEGIVRQIR 163 (221)
T ss_pred HHHHHHHHHHHHH
T ss_conf 8999999999998
No 114
>cd04147 Ras_dva Ras-dva subfamily. Ras-dva (Ras - dorsal-ventral anterior localization) subfamily consists of a set of proteins characterized only in Xenopus leavis, to date. In Xenopus Ras-dva expression is activated by the transcription factor Otx2 and begins during gastrulation throughout the anterior ectoderm. Ras-dva expression is inhibited in the anterior neural plate by factor Xanf1. Downregulation of Ras-dva results in head development abnormalities through the inhibition of several regulators of the anterior neural plate and folds patterning, including Otx2, BF-1, Xag2, Pax6, Slug, and Sox9. Downregulation of Ras-dva also interferes with the FGF-8a signaling within the anterior ectoderm. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.42 E-value=9.4e-13 Score=108.28 Aligned_cols=135 Identities=16% Similarity=0.258 Sum_probs=96.8
Q ss_pred CEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCCEEECCCCCCCCCE--EEEEEECCHHCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 02431146631888999985520002345468721100012456835--8999508100024103566667888998503
Q gi|254780809|r 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY--LVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298 (440)
Q Consensus 221 ~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTTRD~i~~~~~i~g~--~~~l~DTaGir~t~d~IE~~GI~ra~~~i~~ 298 (440)
||+++|.++||||||+++++...= ..++.-|.-|.....+.++|. .+.+.||||-.+-. ......+..
T Consensus 1 KIvvlGd~~VGKTSLi~rf~~~~F--~~~y~~Ti~~~~~k~~~v~~~~v~l~i~DtaG~e~~~--------~l~~~~~r~ 70 (198)
T cd04147 1 RLVFMGAAGVGKTALIQRFLYDTF--EPKYRRTVEEMHRKEYEVGGVSLTLDILDTSGSYSFP--------AMRKLSIQN 70 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHCCC--CCCCCCCHHHEEEEEEEECCEEEEEEEEECCCCCCCH--------HHHHHHCCC
T ss_conf 989999899779999999985989--9888887254188999989979999999787751301--------455554158
Q ss_pred HCCEEECCCCCCHHHHHH-------------HCCCCCCCCCCCCCCCCCCCH------------HH---HHHHHHHHHHH
Q ss_conf 011020135898566343-------------128985322223334465420------------00---00133332323
Q gi|254780809|r 299 ADLILLLKEINSKKEISF-------------PKNIDFIFIGTKSDLYSTYTE------------EY---DHLISSFTGEG 350 (440)
Q Consensus 299 aDlil~v~D~~~~~~~~~-------------~~~~~~i~V~NK~Dl~~~~~~------------~~---~~~ISaktg~G 350 (440)
||.+++|+|.+++..+.. .+..|+++|.||+||...... .. -+.+||++|.|
T Consensus 71 a~~~ilVyDit~~~Sf~~l~~w~~~i~~~~~~~~ipiilVGNK~Dll~~~R~V~~~e~~~~a~~~~~~~f~EtSAktg~n 150 (198)
T cd04147 71 SDAFALVYAVDDPESFEEVERLREEILEVKEDKFVPIVVVGNKADSLEEERQVPAKDALSTVELDWNCGFVETSAKDNEN 150 (198)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHHCCCCEEEECCCCCCCC
T ss_conf 86689996169779999999999999996288898289998787650104784899999999855997899877999949
Q ss_pred HHHHHHHHHHHHHHH
Q ss_conf 589999999996322
Q gi|254780809|r 351 LEELINKIKSILSNK 365 (440)
Q Consensus 351 i~~L~~~I~~~l~~~ 365 (440)
++++.+.|...+...
T Consensus 151 V~e~F~~l~r~i~~~ 165 (198)
T cd04147 151 VLEVFKELLRQANLP 165 (198)
T ss_pred HHHHHHHHHHHHCCH
T ss_conf 899999999997735
No 115
>cd01869 Rab1_Ypt1 Rab1/Ypt1 subfamily. Rab1 is found in every eukaryote and is a key regulatory component for the transport of vesicles from the ER to the Golgi apparatus. Studies on mutations of Ypt1, the yeast homolog of Rab1, showed that this protein is necessary for the budding of vesicles of the ER as well as for their transport to, and fusion with, the Golgi apparatus. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to t
Probab=99.42 E-value=1.3e-12 Score=107.24 Aligned_cols=135 Identities=20% Similarity=0.281 Sum_probs=94.0
Q ss_pred CCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCC-EEECCCCCCCCC--EEEEEEECCHHCCCCHHHHHHHHHHHHHHH
Q ss_conf 30243114663188899998552000234546872-110001245683--589995081000241035666678889985
Q gi|254780809|r 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT-RDVLTIDLDLEG--YLVKISDTAGIRETDDIVEKEGIKRTFLEV 296 (440)
Q Consensus 220 ~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTT-RD~i~~~~~i~g--~~~~l~DTaGir~t~d~IE~~GI~ra~~~i 296 (440)
+||+++|.++||||||++++++.+- ..++.-|. -|.-...+.++| +.+.+.||||-..-.. ......
T Consensus 3 ~Kiv~vGd~~vGKTsli~r~~~~~f--~~~y~~Tig~~~~~~~i~~~~~~~~l~iwDtaG~e~~~~--------~~~~~~ 72 (166)
T cd01869 3 FKLLLIGDSGVGKSCLLLRFADDTY--TESYISTIGVDFKIRTIELDGKTIKLQIWDTAGQERFRT--------ITSSYY 72 (166)
T ss_pred EEEEEECCCCCCHHHHHHHHHCCCC--CCCCCCCCCEEEEEEEEEECCEEEEEEEEECCCCCCCCC--------CHHHHH
T ss_conf 9999999999789999999943999--987478544048999999999999999998999823462--------678885
Q ss_pred HHHCCEEECCCCCCHHHHHH------------HCCCCCCCCCCCCCCCCCCCHH-------------HHHHHHHHHHHHH
Q ss_conf 03011020135898566343------------1289853222233344654200-------------0001333323235
Q gi|254780809|r 297 ENADLILLLKEINSKKEISF------------PKNIDFIFIGTKSDLYSTYTEE-------------YDHLISSFTGEGL 351 (440)
Q Consensus 297 ~~aDlil~v~D~~~~~~~~~------------~~~~~~i~V~NK~Dl~~~~~~~-------------~~~~ISaktg~Gi 351 (440)
..||.+++|+|.+++..+.. ..+.|.++|.||+||.+..... .-+.+||++|.|+
T Consensus 73 ~~a~~~ilvfdit~~~Sf~~i~~w~~~i~~~~~~~~~~ilvgNK~DL~~~r~v~~~~~~~~a~~~~~~~~E~SAk~g~nI 152 (166)
T cd01869 73 RGAHGIIIVYDVTDQESFNNVKQWLQEIDRYASENVNKLLVGNKCDLTDKRVVDYSEAQEFADELGIPFLETSAKNATNV 152 (166)
T ss_pred HHCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECCCCCCCCCHHHHHHHHHHCCCEEEEECCCCCCCH
T ss_conf 63267799711799899999999999999867877744886132011314667999999999983996999876878068
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 8999999999632
Q gi|254780809|r 352 EELINKIKSILSN 364 (440)
Q Consensus 352 ~~L~~~I~~~l~~ 364 (440)
+++.+.|.+.+..
T Consensus 153 ~e~F~~l~~~i~k 165 (166)
T cd01869 153 EQAFMTMAREIKK 165 (166)
T ss_pred HHHHHHHHHHHHH
T ss_conf 9999999999971
No 116
>cd04175 Rap1 Rap1 subgroup. The Rap1 subgroup is part of the Rap subfamily of the Ras family. It can be further divided into the Rap1a and Rap1b isoforms. In humans, Rap1a and Rap1b share 95% sequence homology, but are products of two different genes located on chromosomes 1 and 12, respectively. Rap1a is sometimes called smg p21 or Krev1 in the older literature. Rap1 proteins are believed to perform different cellular functions, depending on the isoform, its subcellular localization, and the effector proteins it binds. For example, in rat salivary gland, neutrophils, and platelets, Rap1 localizes to secretory granules and is believed to regulate exocytosis or the formation of secretory granules. Rap1 has also been shown to localize in the Golgi of rat fibroblasts, zymogen granules, plasma membrane, and the microsomal membrane of pancreatic acini, as well as in the endocytic compartment of skeletal muscle cells and fibroblasts. High expression of Rap1 has been observed in the n
Probab=99.42 E-value=9e-13 Score=108.43 Aligned_cols=134 Identities=22% Similarity=0.302 Sum_probs=94.8
Q ss_pred CCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCCEEECCCCCCCCCE--EEEEEECCHHCCCCHHHHHHHHHHHHHHHH
Q ss_conf 302431146631888999985520002345468721100012456835--899950810002410356666788899850
Q gi|254780809|r 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY--LVKISDTAGIRETDDIVEKEGIKRTFLEVE 297 (440)
Q Consensus 220 ~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTTRD~i~~~~~i~g~--~~~l~DTaGir~t~d~IE~~GI~ra~~~i~ 297 (440)
+||+++|.++||||||+++++...- ..++.-|.-|.....+.++|. .+.+.||||-.+-. ........
T Consensus 2 fKIvllGd~~VGKTsli~r~~~~~f--~~~y~pTi~~~~~k~i~~~~~~~~l~iwDtaG~e~~~--------~l~~~y~~ 71 (164)
T cd04175 2 YKLVVLGSGGVGKSALTVQFVQGIF--VEKYDPTIEDSYRKQVEVDGQQCMLEILDTAGTEQFT--------AMRDLYMK 71 (164)
T ss_pred EEEEEECCCCCCHHHHHHHHHHCCC--CCCCCCCEEEEEEEEEEECCEEEEEEECCCCCCHHHH--------HHHHHHHC
T ss_conf 2999989999759999999970928--8656884046899999999999999851477543245--------67888735
Q ss_pred HHCCEEECCCCCCHHHHHH-------------HCCCCCCCCCCCCCCCCCCCHH-------------HHHHHHHHHHHHH
Q ss_conf 3011020135898566343-------------1289853222233344654200-------------0001333323235
Q gi|254780809|r 298 NADLILLLKEINSKKEISF-------------PKNIDFIFIGTKSDLYSTYTEE-------------YDHLISSFTGEGL 351 (440)
Q Consensus 298 ~aDlil~v~D~~~~~~~~~-------------~~~~~~i~V~NK~Dl~~~~~~~-------------~~~~ISaktg~Gi 351 (440)
.||.+++|+|.+++..... ..+.|+++|.||+||....... .-+.+||++|.|+
T Consensus 72 ~a~~~ilvydvt~~~Sf~~~~~~~~~i~~~~~~~~~piilvgNK~DL~~~r~V~~~~~~~~a~~~~~~~~E~SAk~~~nV 151 (164)
T cd04175 72 NGQGFVLVYSITAQSTFNDLQDLREQILRVKDTEDVPMILVGNKCDLEDERVVGKEQGQNLARQWGCAFLETSAKAKINV 151 (164)
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHCCCCCHHHHHHHHHHCCCEEEEECCCCCCCH
T ss_conf 78689999607877789999999999998628999639985214572220689999999999985999999668988178
Q ss_pred HHHHHHHHHHHH
Q ss_conf 899999999963
Q gi|254780809|r 352 EELINKIKSILS 363 (440)
Q Consensus 352 ~~L~~~I~~~l~ 363 (440)
+++...+.+.+.
T Consensus 152 ~~~F~~l~~~i~ 163 (164)
T cd04175 152 NEIFYDLVRQIN 163 (164)
T ss_pred HHHHHHHHHHHC
T ss_conf 999999999866
No 117
>cd04124 RabL2 RabL2 subfamily. RabL2 (Rab-like2) subfamily. RabL2s are novel Rab proteins identified recently which display features that are distinct from other Rabs, and have been termed Rab-like. RabL2 contains RabL2a and RabL2b, two very similar Rab proteins that share 98% sequence identity in humans. RabL2b maps to the subtelomeric region of chromosome 22q13.3 and RabL2a maps to 2q13, a region that suggests it is also a subtelomeric gene. Both genes are believed to be expressed ubiquitously, suggesting that RabL2s are the first example of duplicated genes in human proximal subtelomeric regions that are both expressed actively. Like other Rab-like proteins, RabL2s lack a prenylation site at the C-terminus. The specific functions of RabL2a and RabL2b remain unknown. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-b
Probab=99.41 E-value=1.3e-12 Score=107.28 Aligned_cols=134 Identities=22% Similarity=0.242 Sum_probs=92.9
Q ss_pred CCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCC-EEECCCCCCCCCE--EEEEEECCHHCCCCHHHHHHHHHHHHHHH
Q ss_conf 30243114663188899998552000234546872-1100012456835--89995081000241035666678889985
Q gi|254780809|r 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT-RDVLTIDLDLEGY--LVKISDTAGIRETDDIVEKEGIKRTFLEV 296 (440)
Q Consensus 220 ~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTT-RD~i~~~~~i~g~--~~~l~DTaGir~t~d~IE~~GI~ra~~~i 296 (440)
+||+++|.++||||||+++++...= ..+..-|. -|.....+.++|. .+.+.||||-..-. ..+....
T Consensus 1 iKivllGd~~VGKTsli~r~~~~~f--~~~~~~Tig~~~~~~~~~~~~~~~~l~iwDtaG~e~f~--------~~~~~y~ 70 (161)
T cd04124 1 VKIILLGDSAVGKSKLVERFLMDGY--EPQQLSTYALTLYKHNAKFEGKTILVDFWDTAGQERFQ--------TMHASYY 70 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHHCCC--CCCCCCCCCEEEEEEEEEECCEEEEEEEEECCCCCCCC--------HHHHHHH
T ss_conf 9899999899678999999980977--99726654157999999999999999999799984343--------2469973
Q ss_pred HHHCCEEECCCCCCHHHHHH-----------HCCCCCCCCCCCCCCCCCCCHHH----------HHHHHHHHHHHHHHHH
Q ss_conf 03011020135898566343-----------12898532222333446542000----------0013333232358999
Q gi|254780809|r 297 ENADLILLLKEINSKKEISF-----------PKNIDFIFIGTKSDLYSTYTEEY----------DHLISSFTGEGLEELI 355 (440)
Q Consensus 297 ~~aDlil~v~D~~~~~~~~~-----------~~~~~~i~V~NK~Dl~~~~~~~~----------~~~ISaktg~Gi~~L~ 355 (440)
..|+.+++|+|.+++..... ..+.|.++|.||+||......+. -+.+|||+|.|++++.
T Consensus 71 ~~a~~~ilvfDit~~~Sf~~~~~w~~~i~~~~~~~p~ilVgNK~DL~~~~~~~~~~~a~~~~~~f~etSAk~g~nV~e~F 150 (161)
T cd04124 71 HKAHACILVFDVTRKITYKNLSKWYEELREYRPEIPCIVVANKIDLDPSVTQKKFNFAEKHNLPLYYVSAADGTNVVKLF 150 (161)
T ss_pred CCCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCHHHHH
T ss_conf 56876799996897788999999999999868699899999971177425899999999869919999078380979999
Q ss_pred HHHHHHHH
Q ss_conf 99999963
Q gi|254780809|r 356 NKIKSILS 363 (440)
Q Consensus 356 ~~I~~~l~ 363 (440)
+.+.+.+-
T Consensus 151 ~~l~~~~i 158 (161)
T cd04124 151 QDAIKLAV 158 (161)
T ss_pred HHHHHHHH
T ss_conf 99999998
No 118
>cd04122 Rab14 Rab14 subfamily. Rab14 GTPases are localized to biosynthetic compartments, including the rough ER, the Golgi complex, and the trans-Golgi network, and to endosomal compartments, including early endosomal vacuoles and associated vesicles. Rab14 is believed to function in both the biosynthetic and recycling pathways between the Golgi and endosomal compartments. Rab14 has also been identified on GLUT4 vesicles, and has been suggested to help regulate GLUT4 translocation. In addition, Rab14 is believed to play a role in the regulation of phagocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GT
Probab=99.41 E-value=8.6e-13 Score=108.55 Aligned_cols=134 Identities=25% Similarity=0.296 Sum_probs=93.6
Q ss_pred CCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCC-EEECCCCCCCCC--EEEEEEECCHHCCCCHHHHHHHHHHHHHHH
Q ss_conf 30243114663188899998552000234546872-110001245683--589995081000241035666678889985
Q gi|254780809|r 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT-RDVLTIDLDLEG--YLVKISDTAGIRETDDIVEKEGIKRTFLEV 296 (440)
Q Consensus 220 ~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTT-RD~i~~~~~i~g--~~~~l~DTaGir~t~d~IE~~GI~ra~~~i 296 (440)
+||+++|.++||||||+++++... -..+.+-|. -|.....+.++| +.+.+.||||-..-.. ......
T Consensus 3 ~KivlvGd~~VGKTsli~r~~~~~--f~~~~~~Tig~~~~~k~i~~~~~~~~l~iwDtaG~e~~~~--------~~~~~~ 72 (166)
T cd04122 3 FKYIIIGDMGVGKSCLLHQFTEKK--FMADCPHTIGVEFGTRIIEVNGQKIKLQIWDTAGQERFRA--------VTRSYY 72 (166)
T ss_pred EEEEEECCCCCCHHHHHHHHHCCC--CCCCCCCCCCEEEEEEEEEECCEEEEEEEEECCCCCCCCC--------CCHHHE
T ss_conf 999999999957999999991298--8999999744688999999999999999998999854442--------521114
Q ss_pred HHHCCEEECCCCCCHHHHHHH------------CCCCCCCCCCCCCCCCCCCHH-------------HHHHHHHHHHHHH
Q ss_conf 030110201358985663431------------289853222233344654200-------------0001333323235
Q gi|254780809|r 297 ENADLILLLKEINSKKEISFP------------KNIDFIFIGTKSDLYSTYTEE-------------YDHLISSFTGEGL 351 (440)
Q Consensus 297 ~~aDlil~v~D~~~~~~~~~~------------~~~~~i~V~NK~Dl~~~~~~~-------------~~~~ISaktg~Gi 351 (440)
..||.+++|+|.+++...... .+.++++|.||+||.+..... .-+.+|||+|.|+
T Consensus 73 ~~a~~~ilvydvt~~~Sf~~l~~w~~~~~~~~~~~~~iilVGNK~DL~~~r~V~~~e~~~~a~~~~~~~~E~SAk~g~nV 152 (166)
T cd04122 73 RGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLEAQRDVTYEEAKQFADENGLLFLECSAKTGENV 152 (166)
T ss_pred ECCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCEEEECCCCCCHHHCCCCCHHHHHHHHHHCCCEEEEECCCCCCCH
T ss_conf 31546599725874767999999999999856999758703401574443899999999999986998999865878088
Q ss_pred HHHHHHHHHHHH
Q ss_conf 899999999963
Q gi|254780809|r 352 EELINKIKSILS 363 (440)
Q Consensus 352 ~~L~~~I~~~l~ 363 (440)
+++-..+.+.+-
T Consensus 153 ~e~F~~l~~~i~ 164 (166)
T cd04122 153 EDAFLETAKKIY 164 (166)
T ss_pred HHHHHHHHHHHH
T ss_conf 999999999997
No 119
>cd04142 RRP22 RRP22 subfamily. RRP22 (Ras-related protein on chromosome 22) subfamily consists of proteins that inhibit cell growth and promote caspase-independent cell death. Unlike most Ras proteins, RRP22 is down-regulated in many human tumor cells due to promoter methylation. RRP22 localizes to the nucleolus in a GTP-dependent manner, suggesting a novel function in modulating transport of nucleolar components. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Like most Ras family proteins, RRP22 is farnesylated.
Probab=99.41 E-value=1.8e-12 Score=106.25 Aligned_cols=146 Identities=15% Similarity=0.211 Sum_probs=96.5
Q ss_pred CCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCC-EEECCCCCCCCCE--EEEEEECCHHCCCCHHHHHHHHHHHHHHH
Q ss_conf 30243114663188899998552000234546872-1100012456835--89995081000241035666678889985
Q gi|254780809|r 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT-RDVLTIDLDLEGY--LVKISDTAGIRETDDIVEKEGIKRTFLEV 296 (440)
Q Consensus 220 ~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTT-RD~i~~~~~i~g~--~~~l~DTaGir~t~d~IE~~GI~ra~~~i 296 (440)
+||+++|.++||||||+++++...= ..++.-|. .|+-...+.++|. .+.+.||||...-...--++-...-...+
T Consensus 1 iKivvlG~~gVGKTsli~rf~~~~F--~~~y~pTig~~~~~k~v~~dg~~~~l~IwDtag~~~~~~tagqe~~~~r~~~i 78 (198)
T cd04142 1 VRVAVLGAPGVGKTAIVRQFLAQEF--PEEYIPTEHRRLYRPAVVLSGRVYDLHILDVPNMQRYPGTAGQEWMDPRFRGL 78 (198)
T ss_pred CEEEEECCCCCCHHHHHHHHHHCCC--CCCCCCCCCEEEEEEEEEECCEEEEEEEEECCCCCCCCCCCCHHHHHHHHHHC
T ss_conf 9899999799899999999971988--88747846616789999999999999999587730455565212355564401
Q ss_pred HHHCCEEECCCCCCHHHHHH---------------HCCCCCCCCCCCCCCCCCCCHH-----------H---HHHHHHHH
Q ss_conf 03011020135898566343---------------1289853222233344654200-----------0---00133332
Q gi|254780809|r 297 ENADLILLLKEINSKKEISF---------------PKNIDFIFIGTKSDLYSTYTEE-----------Y---DHLISSFT 347 (440)
Q Consensus 297 ~~aDlil~v~D~~~~~~~~~---------------~~~~~~i~V~NK~Dl~~~~~~~-----------~---~~~ISakt 347 (440)
..||.+++|+|.++...+.. ....|+++|.||+||....... . -+.+|||+
T Consensus 79 r~a~~~ilVydvt~~~SF~~v~~~~~~i~~~~~~~~~~~piiLVGNK~DL~~~R~v~~~~~~~~a~~~~~~~f~EtSAK~ 158 (198)
T cd04142 79 RNSRAFILVYDICSPDSFHYVKLLRQQILETRPAGNKEPPIVVVGNKRDQQRHRFAPRHVLSVLVRKSWKCGYLECSAKY 158 (198)
T ss_pred CCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHCCCCEEEECCCCC
T ss_conf 46888999998867788899999999999985147999828998345431003568899999999851997699887889
Q ss_pred HHHHHHHHHHHHHHHHHHCC
Q ss_conf 32358999999999632203
Q gi|254780809|r 348 GEGLEELINKIKSILSNKFK 367 (440)
Q Consensus 348 g~Gi~~L~~~I~~~l~~~~~ 367 (440)
|.|++++-+.+...+.....
T Consensus 159 ~~nV~~~F~~lvr~i~~~~~ 178 (198)
T cd04142 159 NWHILLLFKELLISATTRGR 178 (198)
T ss_pred CCCHHHHHHHHHHHHHHHCC
T ss_conf 96989999999999986044
No 120
>cd04127 Rab27A Rab27a subfamily. The Rab27a subfamily consists of Rab27a and its highly homologous isoform, Rab27b. Unlike most Rab proteins whose functions remain poorly defined, Rab27a has many known functions. Rab27a has multiple effector proteins, and depending on which effector it binds, Rab27a has different functions as well as tissue distribution and/or cellular localization. Putative functions have been assigned to Rab27a when associated with the effector proteins Slp1, Slp2, Slp3, Slp4, Slp5, DmSlp, rabphilin, Dm/Ce-rabphilin, Slac2-a, Slac2-b, Slac2-c, Noc2, JFC1, and Munc13-4. Rab27a has been associated with several human diseases, including hemophagocytic syndrome (Griscelli syndrome or GS), Hermansky-Pudlak syndrome, and choroidermia. In the case of GS, a rare, autosomal recessive disease, a Rab27a mutation is directly responsible for the disorder. When Rab27a is localized to the secretory granules of pancreatic beta cells, it is believed to mediate glucose-stimulated
Probab=99.41 E-value=1.4e-12 Score=107.14 Aligned_cols=135 Identities=21% Similarity=0.243 Sum_probs=89.1
Q ss_pred CCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCC-EEECCCCCCC----------CC--EEEEEEECCHHCCCCHHHHH
Q ss_conf 30243114663188899998552000234546872-1100012456----------83--58999508100024103566
Q gi|254780809|r 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT-RDVLTIDLDL----------EG--YLVKISDTAGIRETDDIVEK 286 (440)
Q Consensus 220 ~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTT-RD~i~~~~~i----------~g--~~~~l~DTaGir~t~d~IE~ 286 (440)
+||+++|.++||||||++++++..= ..++.-|. -|.-...+.+ .| +.+.+.||||-..-.
T Consensus 5 ~KivvvGd~~VGKTsli~r~~~~~f--~~~y~~Tig~~~~~k~i~~~~~~~~~~~~~~~~v~l~iwDtaGqe~~~----- 77 (180)
T cd04127 5 IKFLALGDSGVGKTSFLYQYTDNKF--NPKFITTVGIDFREKRVVYNSSGPGGTLGRGQRIHLQLWDTAGQERFR----- 77 (180)
T ss_pred EEEEEECCCCCCHHHHHHHHHCCCC--CCCCCCCCCEEEEEEEEEECCCCCCCCCCCCCEEEEEEEECCCCHHHH-----
T ss_conf 8999999999888999999961958--998688432268899999847655444578858999999898863047-----
Q ss_pred HHHHHHHHHHHHHCCEEECCCCCCHHHHHH-------------HCCCCCCCCCCCCCCCCCCCHH-------------HH
Q ss_conf 667888998503011020135898566343-------------1289853222233344654200-------------00
Q gi|254780809|r 287 EGIKRTFLEVENADLILLLKEINSKKEISF-------------PKNIDFIFIGTKSDLYSTYTEE-------------YD 340 (440)
Q Consensus 287 ~GI~ra~~~i~~aDlil~v~D~~~~~~~~~-------------~~~~~~i~V~NK~Dl~~~~~~~-------------~~ 340 (440)
.........||.+++|+|.+++..+.. ..+.|+++|.||+||.+...-. .-
T Consensus 78 ---~l~~~~~~~a~~~ilvydit~~~Sf~~l~~w~~~i~~~~~~~~~~iilVGNK~DL~~~r~V~~~e~~~~a~~~~~~~ 154 (180)
T cd04127 78 ---SLTTAFFRDAMGFLLIFDLTNEQSFLNVRNWMSQLQTHAYCENPDIVLCGNKADLEDQRQVSEEQAKALADKYGIPY 154 (180)
T ss_pred ---HHHHHHHHHHCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCEEEECCCCCHHHCCCCCHHHHHHHHHHCCCEE
T ss_conf ---88899987543658999689889999899999999985466898578750323667508889999999999849979
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 013333232358999999999632
Q gi|254780809|r 341 HLISSFTGEGLEELINKIKSILSN 364 (440)
Q Consensus 341 ~~ISaktg~Gi~~L~~~I~~~l~~ 364 (440)
+.+|||+|.|++++.+.|.+.+..
T Consensus 155 ~E~SAk~g~nV~e~F~~l~~~i~~ 178 (180)
T cd04127 155 FETSAATGTNVEKAVERLLDLVMK 178 (180)
T ss_pred EEECCCCCCCHHHHHHHHHHHHHH
T ss_conf 998037791989999999999997
No 121
>cd04110 Rab35 Rab35 subfamily. Rab35 is one of several Rab proteins to be found to participate in the regulation of osteoclast cells in rats. In addition, Rab35 has been identified as a protein that interacts with nucleophosmin-anaplastic lymphoma kinase (NPM-ALK) in human cells. Overexpression of NPM-ALK is a key oncogenic event in some anaplastic large-cell lymphomas; since Rab35 interacts with N|PM-ALK, it may provide a target for cancer treatments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is
Probab=99.41 E-value=1e-12 Score=108.07 Aligned_cols=136 Identities=20% Similarity=0.227 Sum_probs=95.4
Q ss_pred CCCEEEECCCCCCHHHHHHHHHCCHHCCCCCC-CCCCEEECCCCCCCCC--EEEEEEECCHHCCCCHHHHHHHHHHHHHH
Q ss_conf 23024311466318889999855200023454-6872110001245683--58999508100024103566667888998
Q gi|254780809|r 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDI-PGTTRDVLTIDLDLEG--YLVKISDTAGIRETDDIVEKEGIKRTFLE 295 (440)
Q Consensus 219 g~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~-~GTTRD~i~~~~~i~g--~~~~l~DTaGir~t~d~IE~~GI~ra~~~ 295 (440)
-++|+++|.++||||||+++++...= ..++ |-...|+....+.++| +.+.+.||||-..-.. .+...
T Consensus 6 ~~KIvlvGd~~VGKTSli~r~~~~~F--~~~~~~Tig~d~~~k~v~i~~~~v~l~iwDtaGqe~~~~--------l~~~~ 75 (199)
T cd04110 6 LFKLLIIGDSGVGKSSLLLRFADNTF--SGSYITTIGVDFKIRTVEINGERVKLQIWDTAGQERFRT--------ITSTY 75 (199)
T ss_pred EEEEEEECCCCCCHHHHHHHHHCCCC--CCCCCCCCCEEEEEEEEEECCEEEEEEEEECCCCCCCCC--------CHHHH
T ss_conf 77999999799888999999950999--998689755587899999999999999998999812353--------52666
Q ss_pred HHHHCCEEECCCCCCHHHHHH-----------HCCCCCCCCCCCCCCCCCCCHH-------------HHHHHHHHHHHHH
Q ss_conf 503011020135898566343-----------1289853222233344654200-------------0001333323235
Q gi|254780809|r 296 VENADLILLLKEINSKKEISF-----------PKNIDFIFIGTKSDLYSTYTEE-------------YDHLISSFTGEGL 351 (440)
Q Consensus 296 i~~aDlil~v~D~~~~~~~~~-----------~~~~~~i~V~NK~Dl~~~~~~~-------------~~~~ISaktg~Gi 351 (440)
...||.+++|+|.+++..+.. ..+.|.++|.||+|+....... .-+.+|||+|.||
T Consensus 76 ~~~a~~~ilvyDit~~~Sf~~l~~w~~~i~~~~~~~~~ilVGNK~Dl~~~r~v~~~e~~~~a~~~~~~f~E~SAktg~nV 155 (199)
T cd04110 76 YRGTHGVIVVYDVTNGESFVNVKRWLQEIEQNCDDVCKVLVGNKNDDPERKVVETEDAYKFAGQMGISLFETSAKENINV 155 (199)
T ss_pred HHCCCCCEEEEECCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHCCCCHHHHHHHHHHCCCEEEEEECCCCCCH
T ss_conf 42465423897179889999999999999975998757999885544754699999999999986997999868999298
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 8999999999632
Q gi|254780809|r 352 EELINKIKSILSN 364 (440)
Q Consensus 352 ~~L~~~I~~~l~~ 364 (440)
+++.+.|.+.+-.
T Consensus 156 ~e~F~~i~~~i~~ 168 (199)
T cd04110 156 EEMFNCITELVLR 168 (199)
T ss_pred HHHHHHHHHHHHH
T ss_conf 9999999999999
No 122
>cd01861 Rab6 Rab6 subfamily. Rab6 is involved in microtubule-dependent transport pathways through the Golgi and from endosomes to the Golgi. Rab6A of mammals is implicated in retrograde transport through the Golgi stack, and is also required for a slow, COPI-independent, retrograde transport pathway from the Golgi to the endoplasmic reticulum (ER). This pathway may allow Golgi residents to be recycled through the ER for scrutiny by ER quality-control systems. Yeast Ypt6p, the homolog of the mammalian Rab6 GTPase, is not essential for cell viability. Ypt6p acts in endosome-to-Golgi, in intra-Golgi retrograde transport, and possibly also in Golgi-to-ER trafficking. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate
Probab=99.41 E-value=1.1e-12 Score=107.71 Aligned_cols=133 Identities=22% Similarity=0.305 Sum_probs=94.0
Q ss_pred CCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCC-EEECCCCCCCCCE--EEEEEECCHHCCCCHHHHHHHHHHHHHHH
Q ss_conf 30243114663188899998552000234546872-1100012456835--89995081000241035666678889985
Q gi|254780809|r 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT-RDVLTIDLDLEGY--LVKISDTAGIRETDDIVEKEGIKRTFLEV 296 (440)
Q Consensus 220 ~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTT-RD~i~~~~~i~g~--~~~l~DTaGir~t~d~IE~~GI~ra~~~i 296 (440)
.||+++|.++||||||++++++.+- ...+.-|. +|+....+.++|. .+.+.||||-..... .....+
T Consensus 1 ~Ki~vvG~~~vGKTsli~r~~~~~f--~~~~~~tig~d~~~k~v~~~~~~~~l~i~D~~g~e~~~~--------~~~~~~ 70 (161)
T cd01861 1 HKLVFLGDQSVGKTSIITRFMYDTF--DNQYQATIGIDFLSKTMYLEDKTVRLQLWDTAGQERFRS--------LIPSYI 70 (161)
T ss_pred CEEEEECCCCCCHHHHHHHHHHCCC--CCCCCCCCCEEEEEEEEEECCEEEEEEEEECCCCHHHHH--------HHHHHH
T ss_conf 9799999799789999999931999--998489756788999999999999999997998531578--------889886
Q ss_pred HHHCCEEECCCCCCHHHHHH------------HCCCCCCCCCCCCCCCCCCCHH-------------HHHHHHHHHHHHH
Q ss_conf 03011020135898566343------------1289853222233344654200-------------0001333323235
Q gi|254780809|r 297 ENADLILLLKEINSKKEISF------------PKNIDFIFIGTKSDLYSTYTEE-------------YDHLISSFTGEGL 351 (440)
Q Consensus 297 ~~aDlil~v~D~~~~~~~~~------------~~~~~~i~V~NK~Dl~~~~~~~-------------~~~~ISaktg~Gi 351 (440)
..+|.+++|+|.+++..+.. ....++++|.||+||....... .-+.+||++|.|+
T Consensus 71 ~~~~~~ilvfd~t~~~Sf~~~~~w~~~i~~~~~~~~~ivlvGnK~Dl~~~r~v~~~e~~~~a~~~~~~y~E~Sak~~~nV 150 (161)
T cd01861 71 RDSSVAVVVYDITNRQSFDNTDKWIDDVRDERGNDVIIVLVGNKTDLSDKRQVSTEEGEKKAKELNAMFIETSAKAGHNV 150 (161)
T ss_pred HHHCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCHHCCCCCHHHHHHHHHHCCCEEEEECCCCCCCH
T ss_conf 65258999984799899999999999999865789849996102110221778999999999984998999834778088
Q ss_pred HHHHHHHHHHH
Q ss_conf 89999999996
Q gi|254780809|r 352 EELINKIKSIL 362 (440)
Q Consensus 352 ~~L~~~I~~~l 362 (440)
+++-+.|.+.+
T Consensus 151 ~e~F~~la~~l 161 (161)
T cd01861 151 KELFRKIASAL 161 (161)
T ss_pred HHHHHHHHHHC
T ss_conf 99999999709
No 123
>cd04149 Arf6 Arf6 subfamily. Arf6 (ADP ribosylation factor 6) proteins localize to the plasma membrane, where they perform a wide variety of functions. In its active, GTP-bound form, Arf6 is involved in cell spreading, Rac-induced formation of plasma membrane ruffles, cell migration, wound healing, and Fc-mediated phagocytosis. Arf6 appears to change the actin structure at the plasma membrane by activating Rac, a Rho family protein involved in membrane ruffling. Arf6 is required for and enhances Rac formation of ruffles. Arf6 can regulate dendritic branching in hippocampal neurons, and in yeast it localizes to the growing bud, where it plays a role in polarized growth and bud site selection. In leukocytes, Arf6 is required for chemokine-stimulated migration across endothelial cells. Arf6 also plays a role in down-regulation of beta2-adrenergic receptors and luteinizing hormone receptors by facilitating the release of sequestered arrestin to allow endocytosis. Arf6 is believed t
Probab=99.41 E-value=7.2e-13 Score=109.07 Aligned_cols=131 Identities=18% Similarity=0.238 Sum_probs=92.2
Q ss_pred HHCCCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCCEEECCCCCCCCCEEEEEEECCHHCCCCHHHHHHHHHHHHHHH
Q ss_conf 20230243114663188899998552000234546872110001245683589995081000241035666678889985
Q gi|254780809|r 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296 (440)
Q Consensus 217 ~~g~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTTRD~i~~~~~i~g~~~~l~DTaGir~t~d~IE~~GI~ra~~~i 296 (440)
+.-++|+++|.+|||||||+++|...+- .+..| |-.+-...+.++++.+.+.||||-..-.. ......
T Consensus 7 kk~~kililG~~~sGKTsil~~l~~~~~--~~~~p--Tvg~~~~~~~~~~~~l~iwD~~Gqe~~r~--------l~~~y~ 74 (168)
T cd04149 7 NKEMRILMLGLDAAGKTTILYKLKLGQS--VTTIP--TVGFNVETVTYKNVKFNVWDVGGQDKIRP--------LWRHYY 74 (168)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHCCCC--CCCCC--CCCCEEEEEEECCEEEEEEECCCCCCCCC--------HHHHHC
T ss_conf 8888999999999998999999966998--76026--26700799998988999998999974660--------657643
Q ss_pred HHHCCEEECCCCCCHHHHH-------------HHCCCCCCCCCCCCCCCCCCCHH----------------HHHHHHHHH
Q ss_conf 0301102013589856634-------------31289853222233344654200----------------000133332
Q gi|254780809|r 297 ENADLILLLKEINSKKEIS-------------FPKNIDFIFIGTKSDLYSTYTEE----------------YDHLISSFT 347 (440)
Q Consensus 297 ~~aDlil~v~D~~~~~~~~-------------~~~~~~~i~V~NK~Dl~~~~~~~----------------~~~~ISakt 347 (440)
..||.++||+|.++...+. ..++.|++++.||+|+....... ....+||+|
T Consensus 75 ~~~~~iifVvDstd~~~~~~~~~~l~~~l~~~~~~~~pilI~~NK~Dl~~~~~~~ei~~~l~l~~~~~~~~~i~~~SA~t 154 (168)
T cd04149 75 TGTQGLIFVVDSADRDRIDEARQELHRIINDREMRDALLLVFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATS 154 (168)
T ss_pred CCCCEEEEEEECCCHHHHHHHHHHHHHHHHCHHHCCCEEEEEEECCCCCCCCCHHHHHHHHCHHHHHCCCCEEEEEECCC
T ss_conf 78866899983776789999999999997145227986999997566777889999999978765517980999806878
Q ss_pred HHHHHHHHHHHH
Q ss_conf 323589999999
Q gi|254780809|r 348 GEGLEELINKIK 359 (440)
Q Consensus 348 g~Gi~~L~~~I~ 359 (440)
|+|+++-.+-|.
T Consensus 155 G~Gv~e~f~WL~ 166 (168)
T cd04149 155 GDGLYEGLTWLS 166 (168)
T ss_pred CCCHHHHHHHHH
T ss_conf 969799999986
No 124
>cd04121 Rab40 Rab40 subfamily. This subfamily contains Rab40a, Rab40b, and Rab40c, which are all highly homologous. In rat, Rab40c is localized to the perinuclear recycling compartment (PRC), and is distributed in a tissue-specific manor, with high expression in brain, heart, kidney, and testis, low expression in lung and liver, and no expression in spleen and skeletal muscle. Rab40c is highly expressed in differentiated oligodendrocytes but minimally expressed in oligodendrocyte progenitors, suggesting a role in the vesicular transport of myelin components. Unlike most other Ras-superfamily proteins, Rab40c was shown to have a much lower affinity for GTP, and an affinity for GDP that is lower than for GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide d
Probab=99.41 E-value=2.2e-12 Score=105.66 Aligned_cols=136 Identities=17% Similarity=0.183 Sum_probs=95.3
Q ss_pred CCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCC-EEECCCCCCCCCE--EEEEEECCHHCCCCHHHHHHHHHHHHHHH
Q ss_conf 30243114663188899998552000234546872-1100012456835--89995081000241035666678889985
Q gi|254780809|r 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT-RDVLTIDLDLEGY--LVKISDTAGIRETDDIVEKEGIKRTFLEV 296 (440)
Q Consensus 220 ~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTT-RD~i~~~~~i~g~--~~~l~DTaGir~t~d~IE~~GI~ra~~~i 296 (440)
++|+++|.++||||||+.+++...- .+++..|+ -|+-...+.++|. .+.|.||||-..-. .......
T Consensus 7 ~KivllGd~~VGKTsl~~r~~~~~f--~~~y~~Tig~~~~~k~~~~~~~~v~l~iwDtaGqe~f~--------~l~~~y~ 76 (189)
T cd04121 7 LKFLLVGDSDVGKGEILASLQDGST--ESPYGYNMGIDYKTTTILLDGRRVKLQLWDTSGQGRFC--------TIFRSYS 76 (189)
T ss_pred EEEEEECCCCCCHHHHHHHHHCCCC--CCCCCCCCCEEEEEEEEEECCEEEEEEEECCCCCCCHH--------HHHHHHH
T ss_conf 9999999899789999999974997--89868765379899999999999999998178862211--------6789886
Q ss_pred HHHCCEEECCCCCCHHHHHH-----------HCCCCCCCCCCCCCCCCCCCHH-------------HHHHHHHHHHHHHH
Q ss_conf 03011020135898566343-----------1289853222233344654200-------------00013333232358
Q gi|254780809|r 297 ENADLILLLKEINSKKEISF-----------PKNIDFIFIGTKSDLYSTYTEE-------------YDHLISSFTGEGLE 352 (440)
Q Consensus 297 ~~aDlil~v~D~~~~~~~~~-----------~~~~~~i~V~NK~Dl~~~~~~~-------------~~~~ISaktg~Gi~ 352 (440)
..||.+++|+|.+++..+.. ..+.|.++|.||+||....... .-+.+||++|.|++
T Consensus 77 r~a~~~ilvyDvt~~~Sf~~l~~w~~~i~~~~~~~p~iLVGNK~DL~~~r~V~~ee~~~~A~~~~~~f~EtSAk~g~nV~ 156 (189)
T cd04121 77 RGAQGIILVYDITNRWSFDGIDRWIKEIDEHAPGVPKILVGNRLHLAFKRQVATEQAQAYAERNGMTFFEVSPLCNFNIT 156 (189)
T ss_pred HHCCCEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHCCCCCHHHHHHHHHHCCCEEEEECCCCCCCHH
T ss_conf 63370489822798899999999999999976898789961325503308899999999999889999996006793989
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 9999999996322
Q gi|254780809|r 353 ELINKIKSILSNK 365 (440)
Q Consensus 353 ~L~~~I~~~l~~~ 365 (440)
++.+.|.+.+-..
T Consensus 157 e~F~~l~~~il~~ 169 (189)
T cd04121 157 ESFTELARIVLMR 169 (189)
T ss_pred HHHHHHHHHHHHH
T ss_conf 9999999999986
No 125
>cd04116 Rab9 Rab9 subfamily. Rab9 is found in late endosomes, together with mannose 6-phosphate receptors (MPRs) and the tail-interacting protein of 47 kD (TIP47). Rab9 is a key mediator of vesicular transport from late endosomes to the trans-Golgi network (TGN) by redirecting the MPRs. Rab9 has been identified as a key component for the replication of several viruses, including HIV1, Ebola, Marburg, and measles, making it a potential target for inhibiting a variety of viruses. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CX
Probab=99.41 E-value=9.8e-13 Score=108.16 Aligned_cols=133 Identities=22% Similarity=0.282 Sum_probs=92.3
Q ss_pred CCCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCC-EEECCCCCCCCCE--EEEEEECCHHCCCCHHHHHHHHHHHHHH
Q ss_conf 230243114663188899998552000234546872-1100012456835--8999508100024103566667888998
Q gi|254780809|r 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT-RDVLTIDLDLEGY--LVKISDTAGIRETDDIVEKEGIKRTFLE 295 (440)
Q Consensus 219 g~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTT-RD~i~~~~~i~g~--~~~l~DTaGir~t~d~IE~~GI~ra~~~ 295 (440)
-+||+++|.++||||||+++++..+= .....-|+ -|.....+.++|. .+.+.||||--+-.. .....
T Consensus 5 ~~KivvlGd~~VGKTsli~r~~~~~f--~~~~~~Tig~~~~~k~i~~~~~~v~l~iwDtaG~e~~~~--------l~~~~ 74 (170)
T cd04116 5 LLKVILLGDGGVGKSSLMNRYVTNKF--DTQLFHTIGVEFLNKDLEVDGHFVTLQIWDTAGQERFRS--------LRTPF 74 (170)
T ss_pred EEEEEEECCCCCCHHHHHHHHHHCCC--CCCCCCCCEEEEEEEEEEECCEEEEEEEEECCCCCCCCC--------CHHHH
T ss_conf 89999999999789999999973989--998888760798999999999999999998999724352--------41766
Q ss_pred HHHHCCEEECCCCCCHHHHHH----------------HCCCCCCCCCCCCCCCCCCCHH-------------HHHHHHHH
Q ss_conf 503011020135898566343----------------1289853222233344654200-------------00013333
Q gi|254780809|r 296 VENADLILLLKEINSKKEISF----------------PKNIDFIFIGTKSDLYSTYTEE-------------YDHLISSF 346 (440)
Q Consensus 296 i~~aDlil~v~D~~~~~~~~~----------------~~~~~~i~V~NK~Dl~~~~~~~-------------~~~~ISak 346 (440)
...||.+++|+|.+++..+.. ..+.|+++|.||+||.+..... .-+.+|||
T Consensus 75 ~~~a~~~ilvydit~~~Sf~~~~~w~~~~~~~~~~~~~~~~piilvgnK~Dl~~r~v~~~e~~~~a~~~~~~~~~E~SAk 154 (170)
T cd04116 75 YRGSDCCLLTFAVDDSQSFQNLSNWKKEFIYYADVKEPESFPFVVLGNKNDIPERQVSTEEAQAWCRENGDYPYFETSAK 154 (170)
T ss_pred EECCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCHHHHCCCCHHHHHHHHHHCCCCEEEEECCC
T ss_conf 00477339999788879999999999999997144578884099996111130378899999999998599789998888
Q ss_pred HHHHHHHHHHHHHHH
Q ss_conf 232358999999999
Q gi|254780809|r 347 TGEGLEELINKIKSI 361 (440)
Q Consensus 347 tg~Gi~~L~~~I~~~ 361 (440)
+|.|++++-+.+.+.
T Consensus 155 ~g~nV~~~F~~l~~~ 169 (170)
T cd04116 155 DATNVAAAFEEAVRR 169 (170)
T ss_pred CCCCHHHHHHHHHHC
T ss_conf 881889999999953
No 126
>cd04141 Rit_Rin_Ric Rit/Rin/Ric subfamily. Rit (Ras-like protein in all tissues), Rin (Ras-like protein in neurons) and Ric (Ras-related protein which interacts with calmodulin) form a subfamily with several unique structural and functional characteristics. These proteins all lack a the C-terminal CaaX lipid-binding motif typical of Ras family proteins, and Rin and Ric contain calmodulin-binding domains. Rin, which is expressed only in neurons, induces neurite outgrowth in rat pheochromocytoma cells through its association with calmodulin and its activation of endogenous Rac/cdc42. Rit, which is ubiquitously expressed in mammals, inhibits growth-factor withdrawl-mediated apoptosis and induces neurite extension in pheochromocytoma cells. Rit and Rin are both able to form a ternary complex with PAR6, a cell polarity-regulating protein, and Rac/cdc42. This ternary complex is proposed to have physiological function in processes such as tumorigenesis. Activated Ric is likely to sign
Probab=99.41 E-value=1.2e-12 Score=107.46 Aligned_cols=136 Identities=19% Similarity=0.236 Sum_probs=95.8
Q ss_pred CCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCCEEECCCCCCCCCE--EEEEEECCHHCCCCHHHHHHHHHHHHHHHH
Q ss_conf 302431146631888999985520002345468721100012456835--899950810002410356666788899850
Q gi|254780809|r 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY--LVKISDTAGIRETDDIVEKEGIKRTFLEVE 297 (440)
Q Consensus 220 ~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTTRD~i~~~~~i~g~--~~~l~DTaGir~t~d~IE~~GI~ra~~~i~ 297 (440)
+||+++|-++||||||+.++++..= ...+.-|.-|.....+.++|. .+.+.||||-.+-.. .......
T Consensus 3 ~Kiv~lGd~~VGKTsli~r~~~~~f--~~~~~pTi~~~~~~~i~i~~~~~~l~iwDtaGqe~~~~--------l~~~~~r 72 (172)
T cd04141 3 YKIVMLGAGGVGKSAVTMQFISHSF--PDYHDPTIEDAYKQQARIDNEPALLDILDTAGQAEFTA--------MRDQYMR 72 (172)
T ss_pred EEEEEECCCCCCHHHHHHHHHHCCC--CCCCCCCCCCCEEEEEEECCEEEEEEEEECCCCCCCCC--------CHHHHHC
T ss_conf 6999999999779999999970989--98758842220369999999999999997888513574--------5155642
Q ss_pred HHCCEEECCCCCCHHHHH-------------HHCCCCCCCCCCCCCCCCCCCHH-------------HHHHHHHHHHHHH
Q ss_conf 301102013589856634-------------31289853222233344654200-------------0001333323235
Q gi|254780809|r 298 NADLILLLKEINSKKEIS-------------FPKNIDFIFIGTKSDLYSTYTEE-------------YDHLISSFTGEGL 351 (440)
Q Consensus 298 ~aDlil~v~D~~~~~~~~-------------~~~~~~~i~V~NK~Dl~~~~~~~-------------~~~~ISaktg~Gi 351 (440)
.||.+++|+|.+++..+. ...+.|+++|.||+||.+...-. .-+.+||++|.||
T Consensus 73 ~a~~~ilvydvt~~~Sf~~~~~w~~~i~~~~~~~~~piilvGNK~DL~~~r~Vs~~e~~~~a~~~~~~f~EtSAk~~~nV 152 (172)
T cd04141 73 CGEGFIICYSVTDRHSFQEASEFKKLITRVRLTEDIPLVLVGNKVDLESQRQVTTEEGRNLAREFNCPFFETSAALRHYI 152 (172)
T ss_pred CCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHCCCCHHHHHHHHHHCCCEEEEECCCCCCCH
T ss_conf 78656887316888899999999999999728899868998504566761888999999999985997999747888288
Q ss_pred HHHHHHHHHHHHHH
Q ss_conf 89999999996322
Q gi|254780809|r 352 EELINKIKSILSNK 365 (440)
Q Consensus 352 ~~L~~~I~~~l~~~ 365 (440)
+++.+.|.+.+...
T Consensus 153 ~e~F~~l~~~i~~k 166 (172)
T cd04141 153 DDAFHGLVREIRRK 166 (172)
T ss_pred HHHHHHHHHHHHHH
T ss_conf 99999999999863
No 127
>cd04144 Ras2 Ras2 subfamily. The Ras2 subfamily, found exclusively in fungi, was first identified in Ustilago maydis. In U. maydis, Ras2 is regulated by Sql2, a protein that is homologous to GEFs (guanine nucleotide exchange factors) of the CDC25 family. Ras2 has been shown to induce filamentous growth, but the signaling cascade through which Ras2 and Sql2 regulate cell morphology is not known. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins.
Probab=99.41 E-value=1.8e-12 Score=106.39 Aligned_cols=135 Identities=20% Similarity=0.233 Sum_probs=95.1
Q ss_pred CEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCCEEECCCCCCCCCEE--EEEEECCHHCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 024311466318889999855200023454687211000124568358--999508100024103566667888998503
Q gi|254780809|r 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL--VKISDTAGIRETDDIVEKEGIKRTFLEVEN 298 (440)
Q Consensus 221 ~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTTRD~i~~~~~i~g~~--~~l~DTaGir~t~d~IE~~GI~ra~~~i~~ 298 (440)
||+++|.+.||||||+.+++... -..++.-|.-|.....+.++|.. +.+.||||-.+-. ......+..
T Consensus 1 KivviGd~gVGKTsli~r~~~~~--F~~~y~pTi~~~~~k~~~~~~~~~~l~iwDtaG~e~~~--------~l~~~~~r~ 70 (190)
T cd04144 1 KLVVLGDGGVGKTALTIQLCLNH--FVETYDPTIEDSYRKQVVVDGQPCMLEVLDTAGQEEYT--------ALRDQWIRE 70 (190)
T ss_pred CEEEECCCCCCHHHHHHHHHHCC--CCCCCCCCCCEEEEEEEEECCEEEEEEEEECCCCCCHH--------HHHHHHHCC
T ss_conf 98999989987899999996297--99886997247889999999999999999899973116--------788998236
Q ss_pred HCCEEECCCCCCHHHHHH---------------HCCCCCCCCCCCCCCCCCCCHH-------------HHHHHHHHHHHH
Q ss_conf 011020135898566343---------------1289853222233344654200-------------000133332323
Q gi|254780809|r 299 ADLILLLKEINSKKEISF---------------PKNIDFIFIGTKSDLYSTYTEE-------------YDHLISSFTGEG 350 (440)
Q Consensus 299 aDlil~v~D~~~~~~~~~---------------~~~~~~i~V~NK~Dl~~~~~~~-------------~~~~ISaktg~G 350 (440)
||.+++|+|.+++..+.. ..+.|+++|.||+||....... .-+.+||++|.|
T Consensus 71 a~~~ilVydvtd~~SF~~l~~w~~~i~~~~~~~~~~~piiLVGNK~Dl~~~r~V~~~e~~~~a~~~~~~~~E~SAk~~~n 150 (190)
T cd04144 71 GEGFILVYSITSRSTFERVERFREQIQRVKDESAADVPIMIVGNKCDKVYEREVSTEEGAALARRLGCEFIEASAKTNVN 150 (190)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCHHHCCCCCHHHHHHHHHHCCCEEEEECCCCCCC
T ss_conf 76589997279778999999999999998533799952895145535033057899999999998099899973588809
Q ss_pred HHHHHHHHHHHHHHH
Q ss_conf 589999999996322
Q gi|254780809|r 351 LEELINKIKSILSNK 365 (440)
Q Consensus 351 i~~L~~~I~~~l~~~ 365 (440)
++++.+.|.+.+...
T Consensus 151 V~e~F~~l~~~i~~~ 165 (190)
T cd04144 151 VERAFYTLVRALRQQ 165 (190)
T ss_pred HHHHHHHHHHHHHHH
T ss_conf 799999999999987
No 128
>cd01860 Rab5_related Rab5-related subfamily. This subfamily includes Rab5 and Rab22 of mammals, Ypt51/Ypt52/Ypt53 of yeast, and RabF of plants. The members of this subfamily are involved in endocytosis and endocytic-sorting pathways. In mammals, Rab5 GTPases localize to early endosomes and regulate fusion of clathrin-coated vesicles to early endosomes and fusion between early endosomes. In yeast, Ypt51p family members similarly regulate membrane trafficking through prevacuolar compartments. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence mo
Probab=99.40 E-value=1.2e-12 Score=107.47 Aligned_cols=133 Identities=28% Similarity=0.340 Sum_probs=92.6
Q ss_pred CCEEEECCCCCCHHHHHHHHHCCHHCCCCCC-CCCCEEECCCCCCCCCE--EEEEEECCHHCCCCHHHHHHHHHHHHHHH
Q ss_conf 3024311466318889999855200023454-68721100012456835--89995081000241035666678889985
Q gi|254780809|r 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDI-PGTTRDVLTIDLDLEGY--LVKISDTAGIRETDDIVEKEGIKRTFLEV 296 (440)
Q Consensus 220 ~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~-~GTTRD~i~~~~~i~g~--~~~l~DTaGir~t~d~IE~~GI~ra~~~i 296 (440)
+||+++|.++||||||+++++..+= ..++ |-.-.|+....+.++|. .+.+.||||-..-. . ......
T Consensus 2 ~KivviGd~~vGKTsli~r~~~~~f--~~~~~~Tig~~~~~k~i~~~~~~v~l~iwDtaG~e~~~----~----~~~~~~ 71 (163)
T cd01860 2 FKLVLLGDSSVGKSSLVLRFVKNEF--SENQESTIGAAFLTQTVNLDDTTVKFEIWDTAGQERYR----S----LAPMYY 71 (163)
T ss_pred EEEEEECCCCCCHHHHHHHHHHCCC--CCCCCCCCCEEEEEEEEEECCEEEEEEEEECCCCHHHH----H----HHHHHH
T ss_conf 7999999599689999999943989--99868866678899999999999999999799971002----7----889885
Q ss_pred HHHCCEEECCCCCCHHHHHH------------HCCCCCCCCCCCCCCCCCCCHH-------------HHHHHHHHHHHHH
Q ss_conf 03011020135898566343------------1289853222233344654200-------------0001333323235
Q gi|254780809|r 297 ENADLILLLKEINSKKEISF------------PKNIDFIFIGTKSDLYSTYTEE-------------YDHLISSFTGEGL 351 (440)
Q Consensus 297 ~~aDlil~v~D~~~~~~~~~------------~~~~~~i~V~NK~Dl~~~~~~~-------------~~~~ISaktg~Gi 351 (440)
..||.+++|+|.+++..+.. ..+.++++|.||+||.+...-. .-+.+||++|.|+
T Consensus 72 ~~a~~~ilvydit~~~Sf~~~~~w~~~i~~~~~~~~~iilVgnK~DL~~~r~V~~~e~~~~a~~~~~~~~E~SAk~~~nV 151 (163)
T cd01860 72 RGAAAAIVVYDITSEESFEKAKSWVKELQRNASPNIIIALVGNKADLESKRQVSTEEAQEYADENGLLFFETSAKTGENV 151 (163)
T ss_pred CCCCCEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHCCCCCHHHHHHHHHHCCCEEEEECCCCCCCH
T ss_conf 16771499981899799999999999999855987236775533575650899999999999982997999862659078
Q ss_pred HHHHHHHHHHH
Q ss_conf 89999999996
Q gi|254780809|r 352 EELINKIKSIL 362 (440)
Q Consensus 352 ~~L~~~I~~~l 362 (440)
+++.+.|.+.+
T Consensus 152 ~e~F~~l~~~i 162 (163)
T cd01860 152 NELFTEIAKKL 162 (163)
T ss_pred HHHHHHHHHHC
T ss_conf 99999999858
No 129
>COG3596 Predicted GTPase [General function prediction only]
Probab=99.40 E-value=4.6e-12 Score=103.47 Aligned_cols=147 Identities=22% Similarity=0.264 Sum_probs=110.2
Q ss_pred HHCCCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCCEEECCCCCCCCCEEEEEEECCHHCCCCHHHHHHHHHHHHHHH
Q ss_conf 20230243114663188899998552000234546872110001245683589995081000241035666678889985
Q gi|254780809|r 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296 (440)
Q Consensus 217 ~~g~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTTRD~i~~~~~i~g~~~~l~DTaGir~t~d~IE~~GI~ra~~~i 296 (440)
.+.+.|.|.|++-+|||||+|+|.+.+.+-|++.+-+|+..-+....+++....|.||||+-+..+. .++=-+.-++.+
T Consensus 37 ~~pvnvLi~G~TG~GKSSliNALF~~~~~~v~~vg~~t~~~~~~~~~~~~~~l~lwDtPG~gdg~~~-D~~~r~~~~d~l 115 (296)
T COG3596 37 KEPVNVLLMGATGAGKSSLINALFQGEVKEVSKVGVGTDITTRLRLSYDGENLVLWDTPGLGDGKDK-DAEHRQLYRDYL 115 (296)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHCCCCCEEEECCCCCCCCHHH-HHHHHHHHHHHH
T ss_conf 6861589743777768899999970267342104668870156774126652488437885532022-189999999886
Q ss_pred HHHCCEEECCCCCCHHH---------HHHH-CCCCCCCCCCCCCCCCCC---C------H--------------------
Q ss_conf 03011020135898566---------3431-289853222233344654---2------0--------------------
Q gi|254780809|r 297 ENADLILLLKEINSKKE---------ISFP-KNIDFIFIGTKSDLYSTY---T------E-------------------- 337 (440)
Q Consensus 297 ~~aDlil~v~D~~~~~~---------~~~~-~~~~~i~V~NK~Dl~~~~---~------~-------------------- 337 (440)
.+.|++||++|+.++.- +... -+++.++++|.+|...+. . .
T Consensus 116 ~~~DLvL~l~~~~draL~~d~~f~~dVi~~~~~~~~i~~VtQ~D~a~p~~~W~~~~~~p~~a~~qfi~~k~~~~~~~~q~ 195 (296)
T COG3596 116 PKLDLVLWLIKADDRALGTDEDFLRDVIILGLDKRVLFVVTQADRAEPGREWDSAGHQPSPAIKQFIEEKAEALGRLFQE 195 (296)
T ss_pred HHCCEEEEECCCCCCCCCCCHHHHHHHHHHCCCCEEEEEEEHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 32247999614777001477999999998605760699973665436554300025999878999999999999998763
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf -000013333232358999999999632
Q gi|254780809|r 338 -EYDHLISSFTGEGLEELINKIKSILSN 364 (440)
Q Consensus 338 -~~~~~ISaktg~Gi~~L~~~I~~~l~~ 364 (440)
.+.+.+|...+-|++.|..++.+.++.
T Consensus 196 V~pV~~~~~r~~wgl~~l~~ali~~lp~ 223 (296)
T COG3596 196 VKPVVAVSGRLPWGLKELVRALITALPV 223 (296)
T ss_pred CCCEEEECCCCCCCHHHHHHHHHHHCCC
T ss_conf 1774775254676689999999986731
No 130
>cd01868 Rab11_like Rab11-like. Rab11a, Rab11b, and Rab25 are closely related, evolutionary conserved Rab proteins that are differentially expressed. Rab11a is ubiquitously synthesized, Rab11b is enriched in brain and heart and Rab25 is only found in epithelia. Rab11/25 proteins seem to regulate recycling pathways from endosomes to the plasma membrane and to the trans-Golgi network. Furthermore, Rab11a is thought to function in the histamine-induced fusion of tubulovesicles containing H+, K+ ATPase with the plasma membrane in gastric parietal cells and in insulin-stimulated insertion of GLUT4 in the plasma membrane of cardiomyocytes. Overexpression of Rab25 has recently been observed in ovarian cancer and breast cancer, and has been correlated with worsened outcomes in both diseases. In addition, Rab25 overexpression has also been observed in prostate cancer, transitional cell carcinoma of the bladder, and invasive breast tumor cells. GTPase activating proteins (GAPs) interact with GTP
Probab=99.40 E-value=1.6e-12 Score=106.71 Aligned_cols=133 Identities=26% Similarity=0.334 Sum_probs=90.3
Q ss_pred CCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCC-EEECCCCCCCCCE--EEEEEECCHHCCCCHHHHHHHHHHHHHHH
Q ss_conf 30243114663188899998552000234546872-1100012456835--89995081000241035666678889985
Q gi|254780809|r 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT-RDVLTIDLDLEGY--LVKISDTAGIRETDDIVEKEGIKRTFLEV 296 (440)
Q Consensus 220 ~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTT-RD~i~~~~~i~g~--~~~l~DTaGir~t~d~IE~~GI~ra~~~i 296 (440)
+||+++|.++||||||+++++..+= ..+..-|. -|.....+.++|. .+.+.||||-..-. .......
T Consensus 4 ~Kiv~iGd~~VGKTsli~r~~~~~f--~~~~~~Tig~~~~~k~i~~~~~~~~l~iwDtaG~e~~~--------~~~~~~~ 73 (165)
T cd01868 4 FKIVLIGDSGVGKSNLLSRFTRNEF--NLDSKSTIGVEFATRSIQIDGKTIKAQIWDTAGQERYR--------AITSAYY 73 (165)
T ss_pred EEEEEECCCCCCHHHHHHHHHHCCC--CCCCCCCCCEEEEEEEEEECCEEEEEEEEECCCCHHHH--------HHHHHHH
T ss_conf 8999999999789999999972989--99889874478789999999999999999899972126--------7899873
Q ss_pred HHHCCEEECCCCCCHHHHHH------------HCCCCCCCCCCCCCCCCCCCHH-------------HHHHHHHHHHHHH
Q ss_conf 03011020135898566343------------1289853222233344654200-------------0001333323235
Q gi|254780809|r 297 ENADLILLLKEINSKKEISF------------PKNIDFIFIGTKSDLYSTYTEE-------------YDHLISSFTGEGL 351 (440)
Q Consensus 297 ~~aDlil~v~D~~~~~~~~~------------~~~~~~i~V~NK~Dl~~~~~~~-------------~~~~ISaktg~Gi 351 (440)
..||.+++|+|.+++..... ..+.|+++|.||+||.....-. .-+.+|||+|.|+
T Consensus 74 ~~a~~~ilvydit~~~Sf~~i~~w~~~i~~~~~~~~~iilVgnK~DL~~~r~Vs~~e~~~~a~~~~~~~~E~SAk~g~nV 153 (165)
T cd01868 74 RGAVGALLVYDITKKQTFENVERWLKELRDHADSNIVIMLVGNKSDLRHLRAVPTEEAKAFAEKNGLSFIETSALDGTNV 153 (165)
T ss_pred HHCCCEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHCCCCHHHHHHHHHHCCCEEEEECCCCCCCH
T ss_conf 32051489862698899999999999999855577359870234786885788899999999985997999678889298
Q ss_pred HHHHHHHHHHH
Q ss_conf 89999999996
Q gi|254780809|r 352 EELINKIKSIL 362 (440)
Q Consensus 352 ~~L~~~I~~~l 362 (440)
+++.+.|.+.+
T Consensus 154 ~e~F~~l~~~i 164 (165)
T cd01868 154 EEAFKQLLTEI 164 (165)
T ss_pred HHHHHHHHHHH
T ss_conf 99999999986
No 131
>cd04157 Arl6 Arl6 subfamily. Arl6 (Arf-like 6) forms a subfamily of the Arf family of small GTPases. Arl6 expression is limited to the brain and kidney in adult mice, but it is expressed in the neural plate and somites during embryogenesis, suggesting a possible role for Arl6 in early development. Arl6 is also believed to have a role in cilia or flagella function. Several proteins have been identified that bind Arl6, including Arl6 interacting protein (Arl6ip), and SEC61beta, a subunit of the heterotrimeric conducting channel SEC61p. Based on Arl6 binding to these effectors, Arl6 is also proposed to play a role in protein transport, membrane trafficking, or cell signaling during hematopoietic maturation. At least three specific homozygous Arl6 mutations in humans have been found to cause Bardet-Biedl syndrome, a disorder characterized by obesity, retinopathy, polydactyly, renal and cardiac malformations, learning disabilities, and hypogenitalism. Older literature suggests that A
Probab=99.40 E-value=1.1e-12 Score=107.91 Aligned_cols=129 Identities=19% Similarity=0.245 Sum_probs=88.6
Q ss_pred CEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCCEEECCCCCCCCCEEEEEEECCHHCCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf 02431146631888999985520002345468721100012456835899950810002410356666788899850301
Q gi|254780809|r 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 (440)
Q Consensus 221 ~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTTRD~i~~~~~i~g~~~~l~DTaGir~t~d~IE~~GI~ra~~~i~~aD 300 (440)
.|+++|.+|||||||+++|...+.. .+.+ ..|-.+-...+..+++.+.+.|++|-..... .-......+|
T Consensus 1 ~Il~lGl~~sGKTtil~~l~~~~~~-~~~~-~pT~G~~~~~~~~~~~~~~iwD~~G~~~~r~--------lw~~y~~~~~ 70 (162)
T cd04157 1 NILVVGLDNSGKTTIINQLKPENAQ-SQII-VPTVGFNVESFEKGNLSFTAFDMSGQGKYRG--------LWEHYYKNIQ 70 (162)
T ss_pred CEEEECCCCCCHHHHHHHHHCCCCC-CCCC-CCCCCEEEEEEEECCEEEEEEECCCCCCCCH--------HHHHHHCCCC
T ss_conf 9999999999889999999728987-5641-6850757899983998899998588744205--------5898705674
Q ss_pred CEEECCCCCCHHHHHH---------------HCCCCCCCCCCCCCCCCCCCHH----------------HHHHHHHHHHH
Q ss_conf 1020135898566343---------------1289853222233344654200----------------00013333232
Q gi|254780809|r 301 LILLLKEINSKKEISF---------------PKNIDFIFIGTKSDLYSTYTEE----------------YDHLISSFTGE 349 (440)
Q Consensus 301 lil~v~D~~~~~~~~~---------------~~~~~~i~V~NK~Dl~~~~~~~----------------~~~~ISaktg~ 349 (440)
.++||+|.++...+.. .++.|++++.||+|+....... ..+.+||+||+
T Consensus 71 ~iI~VvDssd~~~~~~~~~~l~~ll~~~~~~~~~~PiLI~~NK~D~~~~~~~~ei~~~l~l~~~~~~~~~i~~~SA~tG~ 150 (162)
T cd04157 71 GIIFVIDSSDRLRLVVVKDELELLLNHPDIKHRRVPILFFANKMDLPDALTAVKITQLLGLENIKDKPWHIFASNALTGE 150 (162)
T ss_pred EEEEEEECCCHHHHHHHHHHHHHHHHCHHHCCCCCEEEEEEECCCCCCCCCHHHHHHHHCHHHHCCCCEEEEEEECCCCC
T ss_conf 48999707638889999999999971765517984599998147788999999999885866524896499997897897
Q ss_pred HHHHHHHHHH
Q ss_conf 3589999999
Q gi|254780809|r 350 GLEELINKIK 359 (440)
Q Consensus 350 Gi~~L~~~I~ 359 (440)
|+++-.+=|.
T Consensus 151 Gi~e~f~WL~ 160 (162)
T cd04157 151 GLDEGVQWLQ 160 (162)
T ss_pred CHHHHHHHHH
T ss_conf 9899999986
No 132
>cd04128 Spg1 Spg1p. Spg1p (septum-promoting GTPase) was first identified in the fission yeast S. pombe, where it regulates septum formation in the septation initiation network (SIN) through the cdc7 protein kinase. Spg1p is an essential gene that localizes to the spindle pole bodies. When GTP-bound, it binds cdc7 and causes it to translocate to spindle poles. Sid4p (septation initiation defective) is required for localization of Spg1p to the spindle pole body, and the ability of Spg1p to promote septum formation from any point in the cell cycle depends on Sid4p. Spg1p is negatively regulated by Byr4 and cdc16, which form a two-component GTPase activating protein (GAP) for Spg1p. The existence of a SIN-related pathway in plants has been proposed. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are
Probab=99.40 E-value=2e-12 Score=106.01 Aligned_cols=135 Identities=22% Similarity=0.251 Sum_probs=94.5
Q ss_pred CCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCC-EEECCCCCCCCCEE--EEEEECCHHCCCCHHHHHHHHHHHHHHH
Q ss_conf 30243114663188899998552000234546872-11000124568358--9995081000241035666678889985
Q gi|254780809|r 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT-RDVLTIDLDLEGYL--VKISDTAGIRETDDIVEKEGIKRTFLEV 296 (440)
Q Consensus 220 ~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTT-RD~i~~~~~i~g~~--~~l~DTaGir~t~d~IE~~GI~ra~~~i 296 (440)
+||+++|-++||||||++++++..= ..++.-|. .|+....+.++|.+ +.+.||||--+-. .......
T Consensus 1 iKivlvGd~~VGKTsLi~rf~~~~F--~~~y~~Tig~d~~~k~i~v~~~~v~l~iwDtaGqe~f~--------~~~~~y~ 70 (182)
T cd04128 1 LKIGLLGDAQIGKTSLMVKYVEGEF--DEDYIQTLGVNFMEKTISIRGTEITFSIWDLGGQREFI--------NMLPLVC 70 (182)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCC--CCCCCCCCEEEEEEEEEEECCEEEEEEEEECCCCHHHH--------HHHHHHH
T ss_conf 9899999999898999999953999--99988873389899999999999999998677648789--------9999986
Q ss_pred HHHCCEEECCCCCCHHHHHHH-----------CCCCCCCCCCCCCCCCCCCHH------------------HHHHHHHHH
Q ss_conf 030110201358985663431-----------289853222233344654200------------------000133332
Q gi|254780809|r 297 ENADLILLLKEINSKKEISFP-----------KNIDFIFIGTKSDLYSTYTEE------------------YDHLISSFT 347 (440)
Q Consensus 297 ~~aDlil~v~D~~~~~~~~~~-----------~~~~~i~V~NK~Dl~~~~~~~------------------~~~~ISakt 347 (440)
..|+.+++|+|.+++..+... ...+.++|.||+||....... ..+.+|||+
T Consensus 71 ~~a~~~ilvfDit~~~Sf~~~~~w~~~i~~~~~~~~~ilVGnK~DL~~~~~~~~~~~~~~~~~~~a~~~~~~f~etSAk~ 150 (182)
T cd04128 71 NDAVAILFMFDLTRKSTLNSIKEWYRQARGFNKTAIPILVGTKYDLFADLPPEEQEEITKQARKYAKAMKAPLIFCSTSH 150 (182)
T ss_pred CCCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCHHEEHHHHHHHHHHHHCCCEEEEEECCC
T ss_conf 47878999997899899998999999999768999889999866355655622310248999999998499899994799
Q ss_pred HHHHHHHHHHHHHHHHH
Q ss_conf 32358999999999632
Q gi|254780809|r 348 GEGLEELINKIKSILSN 364 (440)
Q Consensus 348 g~Gi~~L~~~I~~~l~~ 364 (440)
|.|++++-+.|.+.+-+
T Consensus 151 ~~nV~e~F~~i~~~i~~ 167 (182)
T cd04128 151 SINVQKIFKIVLAKAFD 167 (182)
T ss_pred CCCHHHHHHHHHHHHHC
T ss_conf 97989999999999966
No 133
>cd01866 Rab2 Rab2 subfamily. Rab2 is localized on cis-Golgi membranes and interacts with Golgi matrix proteins. Rab2 is also implicated in the maturation of vesicular tubular clusters (VTCs), which are microtubule-associated intermediates in transport between the ER and Golgi apparatus. In plants, Rab2 regulates vesicle trafficking between the ER and the Golgi bodies and is important to pollen tube growth. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key featur
Probab=99.40 E-value=2e-12 Score=105.96 Aligned_cols=134 Identities=23% Similarity=0.238 Sum_probs=92.9
Q ss_pred CCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCC-EEECCCCCCCCCE--EEEEEECCHHCCCCHHHHHHHHHHHHHHH
Q ss_conf 30243114663188899998552000234546872-1100012456835--89995081000241035666678889985
Q gi|254780809|r 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT-RDVLTIDLDLEGY--LVKISDTAGIRETDDIVEKEGIKRTFLEV 296 (440)
Q Consensus 220 ~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTT-RD~i~~~~~i~g~--~~~l~DTaGir~t~d~IE~~GI~ra~~~i 296 (440)
+||+++|.++||||||++++++.+=. ..+.-|. -|.....+.++|. .+.+.||||-..-.. ......
T Consensus 5 ~KivlvGd~~VGKTsli~r~~~~~f~--~~~~~Tig~~~~~k~i~~~~~~~~l~iwDt~G~e~~~~--------l~~~~~ 74 (168)
T cd01866 5 FKYIIIGDTGVGKSCLLLQFTDKRFQ--PVHDLTIGVEFGARMITIDGKQIKLQIWDTAGQESFRS--------ITRSYY 74 (168)
T ss_pred EEEEEECCCCCCHHHHHHHHHCCCCC--CCCCCCCEEEEEEEEEEECCEEEEEEEEECCCCCCCCC--------CHHHHH
T ss_conf 89999998997889999999109899--98789850788999999999999999997999733462--------558886
Q ss_pred HHHCCEEECCCCCCHHHHHH------------HCCCCCCCCCCCCCCCCCCCHH-------------HHHHHHHHHHHHH
Q ss_conf 03011020135898566343------------1289853222233344654200-------------0001333323235
Q gi|254780809|r 297 ENADLILLLKEINSKKEISF------------PKNIDFIFIGTKSDLYSTYTEE-------------YDHLISSFTGEGL 351 (440)
Q Consensus 297 ~~aDlil~v~D~~~~~~~~~------------~~~~~~i~V~NK~Dl~~~~~~~-------------~~~~ISaktg~Gi 351 (440)
..||.+++|+|.+++..... ..+.|+++|.||+||....... .-+.+|||+|.|+
T Consensus 75 ~~a~~~ilvydit~~~Sf~~l~~w~~~i~~~~~~~~~iiLVGNK~DL~~~r~V~~~e~~~~a~~~~~~~~E~SAk~~~nV 154 (168)
T cd01866 75 RGAAGALLVYDITRRETFNHLTSWLEDARQHSNSNMTIMLIGNKCDLESRREVSYEEGEAFAKEHGLIFMETSAKTASNV 154 (168)
T ss_pred HHHCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHCCCCCHHHHHHHHHHCCCEEEEECCCCCCCH
T ss_conf 64368999344587799999999999999867999659984342354540778999999999986999999767888088
Q ss_pred HHHHHHHHHHHH
Q ss_conf 899999999963
Q gi|254780809|r 352 EELINKIKSILS 363 (440)
Q Consensus 352 ~~L~~~I~~~l~ 363 (440)
+++-..+.+.+-
T Consensus 155 ~~~F~~l~~~i~ 166 (168)
T cd01866 155 EEAFINTAKEIY 166 (168)
T ss_pred HHHHHHHHHHHH
T ss_conf 999999999997
No 134
>PTZ00132 GTP-binding nuclear protein; Provisional
Probab=99.40 E-value=1.6e-12 Score=106.69 Aligned_cols=137 Identities=15% Similarity=0.181 Sum_probs=94.7
Q ss_pred CCCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCC-EEECCCCCCCCC--EEEEEEECCHHCCCCHHHHHHHHHHHHHH
Q ss_conf 230243114663188899998552000234546872-110001245683--58999508100024103566667888998
Q gi|254780809|r 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT-RDVLTIDLDLEG--YLVKISDTAGIRETDDIVEKEGIKRTFLE 295 (440)
Q Consensus 219 g~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTT-RD~i~~~~~i~g--~~~~l~DTaGir~t~d~IE~~GI~ra~~~ 295 (440)
-+||+++|.++||||||+++++...- ..++.-|. -|.-...+.++| +.+.+.||||--.-.. .+...
T Consensus 6 ~~KIvllGd~~VGKTsLi~r~~~~~F--~~~y~pTig~d~~~~~~~~~~~~i~l~IwDTaGqe~f~s--------l~~~y 75 (209)
T PTZ00132 6 QFKLILVGDGGVGKTTFVKRHLTGEF--EKKYIATLGVEVHPLKFYTNRGKICFNVWDTAGQEKFGG--------LRDGY 75 (209)
T ss_pred EEEEEEECCCCCCHHHHHHHHHHCCC--CCCCCCCCCEEEEEEEEEECCEEEEEEEEECCCCCCCCC--------CCCHH
T ss_conf 68999999999678999999971996--998777602798999999999999999998999744556--------65144
Q ss_pred HHHHCCEEECCCCCCHHHHHH-----------HCCCCCCCCCCCCCCCCCCCHHH-----------HHHHHHHHHHHHHH
Q ss_conf 503011020135898566343-----------12898532222333446542000-----------00133332323589
Q gi|254780809|r 296 VENADLILLLKEINSKKEISF-----------PKNIDFIFIGTKSDLYSTYTEEY-----------DHLISSFTGEGLEE 353 (440)
Q Consensus 296 i~~aDlil~v~D~~~~~~~~~-----------~~~~~~i~V~NK~Dl~~~~~~~~-----------~~~ISaktg~Gi~~ 353 (440)
...|+.+++|+|.+++..... ..+.|+++|.||+||.+...... -+.+|||||.|+++
T Consensus 76 yr~a~~~ilVfDit~~~SF~~l~~W~~ei~~~~~~ipivLVGNK~DL~~r~V~~~~~~~a~~~~~~f~EtSAKtg~NV~e 155 (209)
T PTZ00132 76 YIKGQCAIIMFDVTSRITYKNVPNWHRDITRVCENIPIVLVGNKVDVKDRQVKAKQITFHRKKNLQYYDISAKSNYNFEK 155 (209)
T ss_pred HCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCHHHHHHHHHCCCEEEEEECCCCCCHHH
T ss_conf 24898899984378878999999999999986899878999762322413557999999998799899972689939799
Q ss_pred HHHHHHHHHHHH
Q ss_conf 999999996322
Q gi|254780809|r 354 LINKIKSILSNK 365 (440)
Q Consensus 354 L~~~I~~~l~~~ 365 (440)
+-..|.+.+-+.
T Consensus 156 ~F~~Lar~il~~ 167 (209)
T PTZ00132 156 PFLWLARRLAND 167 (209)
T ss_pred HHHHHHHHHHCC
T ss_conf 999999998479
No 135
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=99.39 E-value=1.5e-12 Score=106.82 Aligned_cols=133 Identities=20% Similarity=0.249 Sum_probs=91.3
Q ss_pred CCEEEECCCCCCHHHHHHHHHCCHHCCCCCC-CCCCEEECCCCCCCCCE--EEEEEECCHHCCCCHHHHHHHHHHHHHHH
Q ss_conf 3024311466318889999855200023454-68721100012456835--89995081000241035666678889985
Q gi|254780809|r 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDI-PGTTRDVLTIDLDLEGY--LVKISDTAGIRETDDIVEKEGIKRTFLEV 296 (440)
Q Consensus 220 ~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~-~GTTRD~i~~~~~i~g~--~~~l~DTaGir~t~d~IE~~GI~ra~~~i 296 (440)
+||+++|.++||||||+.+++..+- +.++ |-..-|+....+.++|. .+.+.||+|-.+-. .-.....
T Consensus 1 lKivvvG~~~vGKTSLi~r~~~~~f--~~~y~pTig~~~~~k~~~~~~~~~~l~iwDt~G~~~~~--------~~~~~~~ 70 (168)
T cd04119 1 IKVISMGNSGVGKSCIIKRYCEGRF--VSKYLPTIGIDYGVKKVSVRNKEVRVNFFDLSGHPEYL--------EVRNEFY 70 (168)
T ss_pred CEEEEECCCCCCHHHHHHHHHHCCC--CCCCCCCCCEEEEEEEEEECCEEEEEEEEECCCCHHHH--------HHHHHHH
T ss_conf 9899999599568999999963999--99858976557779999999999999999899976478--------9999998
Q ss_pred HHHCCEEECCCCCCHHHHHH-----------------HCCCCCCCCCCCCCCCCCCCHH-------------HHHHHHHH
Q ss_conf 03011020135898566343-----------------1289853222233344654200-------------00013333
Q gi|254780809|r 297 ENADLILLLKEINSKKEISF-----------------PKNIDFIFIGTKSDLYSTYTEE-------------YDHLISSF 346 (440)
Q Consensus 297 ~~aDlil~v~D~~~~~~~~~-----------------~~~~~~i~V~NK~Dl~~~~~~~-------------~~~~ISak 346 (440)
..||.+++|+|.+++..... .++.|+++|.||+|+.+..... ..+.+|||
T Consensus 71 ~~ad~~ilvydit~~~Sf~~l~~w~~~~~~~~~~~~~~~~~~~ilvgnK~Dl~~~r~v~~~~~~~~a~~~~~~~~E~Sak 150 (168)
T cd04119 71 KDTQGVLLVYDVTDRQSFEALDSWLKEMKQEGGPHGNMENIVVVVCANKIDLTKHRAVSEDEGRLWAESKGFKYFETSAC 150 (168)
T ss_pred HHCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEEEECCCCCCCCCCHHHHHHHHHHCCCEEEEECCC
T ss_conf 74778899950897444899999999999982453456686299985403444257889999999999869989998857
Q ss_pred HHHHHHHHHHHHHHHH
Q ss_conf 2323589999999996
Q gi|254780809|r 347 TGEGLEELINKIKSIL 362 (440)
Q Consensus 347 tg~Gi~~L~~~I~~~l 362 (440)
+|.|++++.+.|.+.+
T Consensus 151 ~g~~V~e~F~~l~~~i 166 (168)
T cd04119 151 TGEGVNEMFQTLFSSI 166 (168)
T ss_pred CCCCHHHHHHHHHHHH
T ss_conf 7908899999999997
No 136
>cd04120 Rab12 Rab12 subfamily. Rab12 was first identified in canine cells, where it was localized to the Golgi complex. The specific function of Rab12 remains unknown, and inconsistent results about its cellular localization have been reported. More recent studies have identified Rab12 associated with post-Golgi vesicles, or with other small vesicle-like structures but not with the Golgi complex. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic
Probab=99.39 E-value=2.4e-12 Score=105.46 Aligned_cols=137 Identities=20% Similarity=0.259 Sum_probs=94.3
Q ss_pred CCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCC-EEECCCCCCCCCE--EEEEEECCHHCCCCHHHHHHHHHHHHHHH
Q ss_conf 30243114663188899998552000234546872-1100012456835--89995081000241035666678889985
Q gi|254780809|r 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT-RDVLTIDLDLEGY--LVKISDTAGIRETDDIVEKEGIKRTFLEV 296 (440)
Q Consensus 220 ~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTT-RD~i~~~~~i~g~--~~~l~DTaGir~t~d~IE~~GI~ra~~~i 296 (440)
+||+++|.+.||||||++++++..= ..++.-|. -|+-...+.++|. .+.+.||||--.-.. .+....
T Consensus 1 lKIvllGd~gVGKTsLi~rf~~~~F--~~~y~~Tig~d~~~k~i~~~~~~v~l~IWDTaGqe~f~s--------l~~~yy 70 (202)
T cd04120 1 LQVIIIGSRGVGKTSLMRRFTDDTF--CEACKSGVGVDFKIKTVELRGKKIRLQIWDTAGQERFNS--------ITSAYY 70 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCC--CCCCCCCCCEEEEEEEEEECCEEEEEEEEECCCCCCCCC--------CHHHHH
T ss_conf 9899999799729999999954999--998799764688999999999999999997988612452--------357887
Q ss_pred HHHCCEEECCCCCCHHHHHH------------HCCCCCCCCCCCCCCCCCCCH----------H----HHHHHHHHHHHH
Q ss_conf 03011020135898566343------------128985322223334465420----------0----000133332323
Q gi|254780809|r 297 ENADLILLLKEINSKKEISF------------PKNIDFIFIGTKSDLYSTYTE----------E----YDHLISSFTGEG 350 (440)
Q Consensus 297 ~~aDlil~v~D~~~~~~~~~------------~~~~~~i~V~NK~Dl~~~~~~----------~----~~~~ISaktg~G 350 (440)
..|+.+++|+|.++...+.. ..+.++++|.||+||.....- . .-+.+|||+|.|
T Consensus 71 r~a~~~ilVyDit~~~SF~~l~~W~~~i~~~~~~~~~iiLVGNK~DL~~~R~Vs~~e~~~~A~~~~~~~f~EtSAkt~~n 150 (202)
T cd04120 71 RSAKGIILVYDITKKETFDDLPKWMKMIDKYASEDAELLLVGNKLDCETDREISRQQGEKFAQQITGMRFCEASAKDNFN 150 (202)
T ss_pred HHHCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCHHHCCCCHHHHHHHHHHCCCCEEEECCCCCCCC
T ss_conf 64144589985688899999999999999746688718987653650531787999999999827998899925899969
Q ss_pred HHHHHHHHHHHHHHHC
Q ss_conf 5899999999963220
Q gi|254780809|r 351 LEELINKIKSILSNKF 366 (440)
Q Consensus 351 i~~L~~~I~~~l~~~~ 366 (440)
++++-..|.+.+-...
T Consensus 151 V~e~F~~l~~~i~~~~ 166 (202)
T cd04120 151 VDEIFLKLVDDILKKM 166 (202)
T ss_pred HHHHHHHHHHHHHHHC
T ss_conf 8999999999999858
No 137
>cd04140 ARHI_like ARHI subfamily. ARHI (A Ras homolog member I) is a member of the Ras family with several unique structural and functional properties. ARHI is expressed in normal human ovarian and breast tissue, but its expression is decreased or eliminated in breast and ovarian cancer. ARHI contains an N-terminal extension of 34 residues (human) that is required to retain its tumor suppressive activity. Unlike most other Ras family members, ARHI is maintained in the constitutively active (GTP-bound) state in resting cells and has modest GTPase activity. ARHI inhibits STAT3 (signal transducers and activators of transcription 3), a latent transcription factor whose abnormal activation plays a critical role in oncogenesis. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Ras proteins. Due to
Probab=99.39 E-value=1.4e-12 Score=107.16 Aligned_cols=132 Identities=20% Similarity=0.283 Sum_probs=91.7
Q ss_pred CCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCCEEECCCCCCCCCE--EEEEEECCHHCCCCHHHHHHHHHHHHHHHH
Q ss_conf 302431146631888999985520002345468721100012456835--899950810002410356666788899850
Q gi|254780809|r 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY--LVKISDTAGIRETDDIVEKEGIKRTFLEVE 297 (440)
Q Consensus 220 ~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTTRD~i~~~~~i~g~--~~~l~DTaGir~t~d~IE~~GI~ra~~~i~ 297 (440)
+||+++|.++||||||+++++...= ..++.-|.-|.-...+.++|. .+.+.||||-.+-.. .......
T Consensus 2 ~KivllGd~~VGKTsli~r~~~~~F--~~~y~~Ti~~~~~~~i~~~~~~~~l~iwDtaG~e~~~~--------l~~~~~~ 71 (165)
T cd04140 2 YRVVVFGAGGVGKSSLVLRFVKGTF--RESYIPTIEDTYRQVISCSKNICTLQITDTTGSHQFPA--------MQRLSIS 71 (165)
T ss_pred EEEEEECCCCCCHHHHHHHHHHCCC--CCCCCCCCCCEEEEEEEECCEEEEEEEEECCCCCCCCC--------CHHHHHC
T ss_conf 0999989999769999999964969--99868845420558999999999999998999846542--------3244506
Q ss_pred HHCCEEECCCCCCHHHHHH---------------HCCCCCCCCCCCCCCCCCCCHH-------------HHHHHHHHHHH
Q ss_conf 3011020135898566343---------------1289853222233344654200-------------00013333232
Q gi|254780809|r 298 NADLILLLKEINSKKEISF---------------PKNIDFIFIGTKSDLYSTYTEE-------------YDHLISSFTGE 349 (440)
Q Consensus 298 ~aDlil~v~D~~~~~~~~~---------------~~~~~~i~V~NK~Dl~~~~~~~-------------~~~~ISaktg~ 349 (440)
.||.+++|+|.+++..... ..+.|+++|.||+|+....... .-+.+|||+|.
T Consensus 72 ~a~~~ilvydit~~~Sf~~~~~~~~~i~~~~~~~~~~~piilVgNK~Dl~~~r~V~~~e~~~~a~~~~~~~~E~SAk~~~ 151 (165)
T cd04140 72 KGHAFILVYSVTSKQSLEELKPIYELICEIKGNNIEKIPIMLVGNKCDESHKREVSSNEGAACATEWNCAFMETSAKTNH 151 (165)
T ss_pred CCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHCCCEEEEECCCCCC
T ss_conf 88579998138987899999999999999961588888789986424640027889999999999869889997447794
Q ss_pred HHHHHHHHHHHH
Q ss_conf 358999999999
Q gi|254780809|r 350 GLEELINKIKSI 361 (440)
Q Consensus 350 Gi~~L~~~I~~~ 361 (440)
|++++-+.|.++
T Consensus 152 nV~e~F~~l~~l 163 (165)
T cd04140 152 NVQELFQELLNL 163 (165)
T ss_pred CHHHHHHHHHHC
T ss_conf 879999999814
No 138
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=99.39 E-value=3.9e-13 Score=110.93 Aligned_cols=57 Identities=46% Similarity=0.657 Sum_probs=47.7
Q ss_pred HCCCEEEECCCCCCHHHHHHHHHCC--------HHCCCCCCCCCCEEECCCCCCCCCEEEEEEECCHH
Q ss_conf 0230243114663188899998552--------00023454687211000124568358999508100
Q gi|254780809|r 218 NGYKIVILGHSNAGKSSLFNALAKK--------DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277 (440)
Q Consensus 218 ~g~~v~i~G~pN~GKSSL~N~L~~~--------~~aIVs~~~GTTRD~i~~~~~i~g~~~~l~DTaGi 277 (440)
.+-.|.++|.||||||||+|+|+++ .++-||.+||||+|.+...+.- ...++||||+
T Consensus 126 ~~~~vyvvG~~NvGKSTLiN~Ll~~~~~~~~~~~~~t~S~~PGTTl~~i~~~l~~---~~~l~DtPGi 190 (190)
T cd01855 126 KGGDVYVVGATNVGKSTLINALLKKDNGKKKLKDLLTTSPIPGTTLDLIKIPLGN---GKKLYDTPGI 190 (190)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCEEECCCCCCCCCCEEEECCC---CCEEEECCCC
T ss_conf 6985799805875467999998630234434566406679997316525897399---9999959599
No 139
>cd04108 Rab36_Rab34 Rab34/Rab36 subfamily. Rab34, found primarily in the Golgi, interacts with its effector, Rab-interacting lysosomal protein (RILP). This enables its participation in microtubular dynenin-dynactin-mediated repositioning of lysosomes from the cell periphery to the Golgi. A Rab34 (Rah) isoform that lacks the consensus GTP-binding region has been identified in mice. This isoform is associated with membrane ruffles and promotes macropinosome formation. Rab36 has been mapped to human chromosome 22q11.2, a region that is homozygously deleted in malignant rhabdoid tumors (MRTs). However, experimental assessments do not implicate Rab36 as a tumor suppressor that would enable tumor formation through a loss-of-function mechanism. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further re
Probab=99.39 E-value=1.9e-12 Score=106.15 Aligned_cols=134 Identities=19% Similarity=0.291 Sum_probs=91.8
Q ss_pred CCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCC-EEECCCCCCCCCE--EEEEEECCHHCCCCHHHHHHHHHHHHHHH
Q ss_conf 30243114663188899998552000234546872-1100012456835--89995081000241035666678889985
Q gi|254780809|r 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT-RDVLTIDLDLEGY--LVKISDTAGIRETDDIVEKEGIKRTFLEV 296 (440)
Q Consensus 220 ~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTT-RD~i~~~~~i~g~--~~~l~DTaGir~t~d~IE~~GI~ra~~~i 296 (440)
.||+++|.++||||||+++++...- ..++.-|. -|.-...+.++|. .+.+.||||--.-.. ......
T Consensus 1 aKivlvGd~~VGKTsli~r~~~~~f--~~~y~~Tig~d~~~k~~~v~~~~~~l~iwDtaGqe~f~~--------l~~~y~ 70 (170)
T cd04108 1 SKVIVVGDLSVGKTCLINRFCKDVF--DKNYKATIGVDFEMERFEILGVPFSLQLWDTAGQERFKC--------IASTYY 70 (170)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCC--CCCCCCCCCEEEEEEEEEECCEEEEEEEEECCCCCCCCC--------CHHHHH
T ss_conf 9899999899898999999963988--997256345058999999999999999998999974664--------437773
Q ss_pred HHHCCEEECCCCCCHHHHHH--------H-----CCCCCCCCCCCCCCCCCCCH-----H----------HHHHHHHHHH
Q ss_conf 03011020135898566343--------1-----28985322223334465420-----0----------0001333323
Q gi|254780809|r 297 ENADLILLLKEINSKKEISF--------P-----KNIDFIFIGTKSDLYSTYTE-----E----------YDHLISSFTG 348 (440)
Q Consensus 297 ~~aDlil~v~D~~~~~~~~~--------~-----~~~~~i~V~NK~Dl~~~~~~-----~----------~~~~ISaktg 348 (440)
..||.+++|+|.+++..+.. . ...++++|.||+||.+.... + .-+.+|||+|
T Consensus 71 r~a~~~ilvyDvt~~~Sf~~~~~w~~~~~~~~~~~~~~i~LvgNK~DL~~~~~~~~~~~~~~~~a~~~~~~~~E~SAk~g 150 (170)
T cd04108 71 RGAQAIIIVFDLTDVASLEHTRQWLEDALKENDPSSVLLFLVGTKKDLSSPAQYALMEQDAIKLAAEMQAEYWSVSALSG 150 (170)
T ss_pred CCCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCEEEEEHHHHHHHHHHCCCEEEEECCCCC
T ss_conf 27875899997898789999999999999850899982999998413798755764489999999877987999855788
Q ss_pred HHHHHHHHHHHHHHH
Q ss_conf 235899999999963
Q gi|254780809|r 349 EGLEELINKIKSILS 363 (440)
Q Consensus 349 ~Gi~~L~~~I~~~l~ 363 (440)
.|++++-+.|.+.+-
T Consensus 151 ~nV~e~F~~ia~~~~ 165 (170)
T cd04108 151 ENVREFFFRVAALTF 165 (170)
T ss_pred CCHHHHHHHHHHHHH
T ss_conf 187999999999998
No 140
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=99.39 E-value=1.6e-12 Score=106.72 Aligned_cols=133 Identities=23% Similarity=0.257 Sum_probs=95.3
Q ss_pred HHCCCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCCEEECCCCCCCCCEEEEEEECCHHCCCCHHHHHHHHHHHHHHH
Q ss_conf 20230243114663188899998552000234546872110001245683589995081000241035666678889985
Q gi|254780809|r 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296 (440)
Q Consensus 217 ~~g~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTTRD~i~~~~~i~g~~~~l~DTaGir~t~d~IE~~GI~ra~~~i 296 (440)
+.-.+|+++|.+||||||+++.|.+.+..-+.+ |-..-.+.+.++++.+.+.|++|-..... .-....
T Consensus 17 ~k~~kIlilGld~aGKTTil~~l~~~~~~~~~P----T~Gfn~e~i~~~~~~~~~wDvgG~~~~R~--------lW~~Y~ 84 (190)
T cd00879 17 NKEAKILFLGLDNAGKTTLLHMLKDDRLAQHVP----TLHPTSEELTIGNIKFKTFDLGGHEQARR--------LWKDYF 84 (190)
T ss_pred CCCCEEEEEECCCCCHHHHHHHHHCCCCCEECC----CCCCCEEEEEECCEEEEEEECCCCCCCCC--------CHHHHH
T ss_conf 770489999069998899999980799531526----55874599998999999998999845554--------388884
Q ss_pred HHHCCEEECCCCCCHHHHH-------------HHCCCCCCCCCCCCCCCCCCCHHH------------------------
Q ss_conf 0301102013589856634-------------312898532222333446542000------------------------
Q gi|254780809|r 297 ENADLILLLKEINSKKEIS-------------FPKNIDFIFIGTKSDLYSTYTEEY------------------------ 339 (440)
Q Consensus 297 ~~aDlil~v~D~~~~~~~~-------------~~~~~~~i~V~NK~Dl~~~~~~~~------------------------ 339 (440)
.++|.++||+|++++..+. ..+++|++++.||.|+........
T Consensus 85 ~~~~~iIfVVDssD~~r~~eak~~L~~lL~~~~l~~~PlLIlaNK~Dl~~a~~~~ei~~~L~L~~~~~~~~~~~~~~~~r 164 (190)
T cd00879 85 PEVDGIVFLVDAADPERFQESKEELDSLLSDEELANVPFLILGNKIDLPGAVSEEELRQALGLYGTTTGKGVSLKVSGIR 164 (190)
T ss_pred HCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCC
T ss_conf 31137999997767789999999999998555006980899986667767989999998839842015544334545776
Q ss_pred ---HHHHHHHHHHHHHHHHHHHHHH
Q ss_conf ---0013333232358999999999
Q gi|254780809|r 340 ---DHLISSFTGEGLEELINKIKSI 361 (440)
Q Consensus 340 ---~~~ISaktg~Gi~~L~~~I~~~ 361 (440)
....||+||+|+++=.+=|.+.
T Consensus 165 ~~~i~~csA~tG~Gl~egl~WLs~~ 189 (190)
T cd00879 165 PIEVFMCSVVKRQGYGEAFRWLSQY 189 (190)
T ss_pred CEEEEEEEEECCCCHHHHHHHHHHH
T ss_conf 1499965506796828999999854
No 141
>cd00877 Ran Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran GTPase is involved in diverse biological functions, such as nuclear transport, spindle formation during mitosis, DNA replication, and cell division. Among the Ras superfamily, Ran is a unique small G protein. It does not have a lipid modification motif at the C-terminus to bind to the membrane, which is often observed within the Ras superfamily. Ran may therefore interact with a wide range of proteins in various intracellular locations. Like other GTPases, Ran exists in GTP- and GDP-bound conformations that interact differently with effectors. Conversion between these forms and the assembly or disassembly of effector complexes requires the interaction of regulator proteins. The intrinsic GTPase activity of Ran is very low, but it is greatly stimulated by a GTPase-activating protein (RanGAP1) located in the cytoplasm. By contrast, RCC1, a guanine nucleotide exchange factor that generates RanGTP, is
Probab=99.38 E-value=3.2e-12 Score=104.61 Aligned_cols=134 Identities=16% Similarity=0.175 Sum_probs=92.4
Q ss_pred CCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCC--EEECCCCCCCCC--EEEEEEECCHHCCCCHHHHHHHHHHHHHH
Q ss_conf 30243114663188899998552000234546872--110001245683--58999508100024103566667888998
Q gi|254780809|r 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT--RDVLTIDLDLEG--YLVKISDTAGIRETDDIVEKEGIKRTFLE 295 (440)
Q Consensus 220 ~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTT--RD~i~~~~~i~g--~~~~l~DTaGir~t~d~IE~~GI~ra~~~ 295 (440)
+||+++|.++||||||+++++..+- ++..-+| -|.-...+..++ +.+.+.||||--.- . ......
T Consensus 1 ~KivlvGd~~VGKTsli~r~~~~~f---~~~~~~Tig~~~~~~~~~~~~~~v~l~iwDtaGqe~~----~----~l~~~y 69 (166)
T cd00877 1 FKLVLVGDGGTGKTTFVKRHLTGEF---EKKYVATLGVEVHPLDFHTNRGKIRFNVWDTAGQEKF----G----GLRDGY 69 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHHHCCC---CCCCCCCCCEEEEEEEEEECCEEEEEEEEECCCCHHH----H----HHHHHH
T ss_conf 9899999999888999999983999---9986873255679999999997999999975787156----6----687887
Q ss_pred HHHHCCEEECCCCCCHHHHH-----------HHCCCCCCCCCCCCCCCCCCCHHH-----------HHHHHHHHHHHHHH
Q ss_conf 50301102013589856634-----------312898532222333446542000-----------00133332323589
Q gi|254780809|r 296 VENADLILLLKEINSKKEIS-----------FPKNIDFIFIGTKSDLYSTYTEEY-----------DHLISSFTGEGLEE 353 (440)
Q Consensus 296 i~~aDlil~v~D~~~~~~~~-----------~~~~~~~i~V~NK~Dl~~~~~~~~-----------~~~ISaktg~Gi~~ 353 (440)
...||.+|+|+|.+++.... ...+.|+++|.||+||........ -+.+|||+|.|+++
T Consensus 70 ~~~a~~~ilvyDvt~~~Sf~~v~~w~~~i~~~~~~~piilVgNK~Dl~~~~~~~~~~~~~~~~~~~~~EtSAk~~~nV~e 149 (166)
T cd00877 70 YIGGQCAIIMFDVTSRVTYKNVPNWHRDLVRVCGNIPIVLCGNKVDIKDRKVKAKQITFHRKKNLQYYEISAKSNYNFEK 149 (166)
T ss_pred HCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCHHHHHHHHHCCCEEEEECCCCCCCHHH
T ss_conf 40065799843789888999999999999986899989999986217503667999999997899899984589909899
Q ss_pred HHHHHHHHHHH
Q ss_conf 99999999632
Q gi|254780809|r 354 LINKIKSILSN 364 (440)
Q Consensus 354 L~~~I~~~l~~ 364 (440)
+-..|.+.+-.
T Consensus 150 ~F~~la~~il~ 160 (166)
T cd00877 150 PFLWLARKLLG 160 (166)
T ss_pred HHHHHHHHHHC
T ss_conf 99999999842
No 142
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=99.38 E-value=1.1e-12 Score=107.78 Aligned_cols=131 Identities=27% Similarity=0.380 Sum_probs=90.5
Q ss_pred CCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCCEEECCCCCCCCCEE--EEEEECCHHCCCCHHHHHHHHHHHHHHHH
Q ss_conf 3024311466318889999855200023454687211000124568358--99950810002410356666788899850
Q gi|254780809|r 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL--VKISDTAGIRETDDIVEKEGIKRTFLEVE 297 (440)
Q Consensus 220 ~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTTRD~i~~~~~i~g~~--~~l~DTaGir~t~d~IE~~GI~ra~~~i~ 297 (440)
+||+++|.++||||||++++++..= ..++.-|.-|.....+.++|.. +.+.||||--+... + ......
T Consensus 1 iKi~llGd~~VGKTsli~r~~~~~f--~~~y~~Ti~~~~~~~~~~~~~~~~l~iwDt~G~e~~~~------~--~~~~~~ 70 (171)
T cd00157 1 IKIVVVGDGAVGKTCLLISYTTGKF--PTEYVPTVFDNYSATVTVDGKQVNLGLWDTAGQEEYDR------L--RPLSYP 70 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCC--CCCCCCEEEEEEEEEEEECCEEEEEEEEECCCCCCCCC------C--HHHHHH
T ss_conf 9899999999669999999962999--98758803466689999999999999998998710241------3--223444
Q ss_pred HHCCEEECCCCCCHHHHH------------HHCCCCCCCCCCCCCCCCCCC---------------------HHH----H
Q ss_conf 301102013589856634------------312898532222333446542---------------------000----0
Q gi|254780809|r 298 NADLILLLKEINSKKEIS------------FPKNIDFIFIGTKSDLYSTYT---------------------EEY----D 340 (440)
Q Consensus 298 ~aDlil~v~D~~~~~~~~------------~~~~~~~i~V~NK~Dl~~~~~---------------------~~~----~ 340 (440)
.||.+++|+|.+++.... ...+.|+++|.||+||.+... ... -
T Consensus 71 ~a~~~ilvydit~~~Sf~~i~~~w~~~i~~~~~~~piilvgNK~DL~~~~~~~~~~~~~~r~V~~~e~~~~a~~~~~~~f 150 (171)
T cd00157 71 NTDVFLICFSVDSPSSFENVKTKWIPEIRHYCPNVPIILVGTKIDLRDDENTLKKLEKGKEPITPEEGEKLAKEIGAIGY 150 (171)
T ss_pred HCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCHHHHHHCCCCCCCHHHHHHHHHHCCCCEE
T ss_conf 26589999968977889999999999999859998689999871001230002233114751589999999998499889
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q ss_conf 01333323235899999999
Q gi|254780809|r 341 HLISSFTGEGLEELINKIKS 360 (440)
Q Consensus 341 ~~ISaktg~Gi~~L~~~I~~ 360 (440)
+.+||++|.|++++.+.+.+
T Consensus 151 ~E~SAk~g~nV~e~F~~l~r 170 (171)
T cd00157 151 MECSALTQEGVKEVFEEAIR 170 (171)
T ss_pred EEECCCCCCCHHHHHHHHHC
T ss_conf 99787899598999999966
No 143
>cd01864 Rab19 Rab19 subfamily. Rab19 proteins are associated with Golgi stacks. Similarity analysis indicated that Rab41 is closely related to Rab19. However, the function of these Rabs is not yet chracterized. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.38 E-value=1.7e-12 Score=106.42 Aligned_cols=132 Identities=22% Similarity=0.257 Sum_probs=91.7
Q ss_pred CCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCC-EEECCCCCCCCCE--EEEEEECCHHCCCCHHHHHHHHHHHHHHH
Q ss_conf 30243114663188899998552000234546872-1100012456835--89995081000241035666678889985
Q gi|254780809|r 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT-RDVLTIDLDLEGY--LVKISDTAGIRETDDIVEKEGIKRTFLEV 296 (440)
Q Consensus 220 ~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTT-RD~i~~~~~i~g~--~~~l~DTaGir~t~d~IE~~GI~ra~~~i 296 (440)
+||+++|.++||||||+++++..+= ...+.-|. -|.....+.++|. .+.+.||||--+-.. ......
T Consensus 4 ~Kiv~lGd~~vGKTsli~r~~~~~f--~~~~~~Ti~~~~~~k~i~~~~~~~~l~iwDtaG~e~~~~--------l~~~~~ 73 (165)
T cd01864 4 FKIILIGDSNVGKTCVVQRFKSGTF--SERQGNTIGVDFTMKTLEIEGKRVKLQIWDTAGQERFRT--------ITQSYY 73 (165)
T ss_pred EEEEEECCCCCCHHHHHHHHHHCCC--CCCCCCCCCEEEEEEEEEECCEEEEEEEEECCCCCCCCC--------CCHHHE
T ss_conf 9999999999589999999964999--998799754378999999999999999998999834453--------507552
Q ss_pred HHHCCEEECCCCCCHHHHHH------------HCCCCCCCCCCCCCCCCCCCHH--------------HHHHHHHHHHHH
Q ss_conf 03011020135898566343------------1289853222233344654200--------------000133332323
Q gi|254780809|r 297 ENADLILLLKEINSKKEISF------------PKNIDFIFIGTKSDLYSTYTEE--------------YDHLISSFTGEG 350 (440)
Q Consensus 297 ~~aDlil~v~D~~~~~~~~~------------~~~~~~i~V~NK~Dl~~~~~~~--------------~~~~ISaktg~G 350 (440)
..||.+++|+|.+++..... ..+.|+++|.||+||....... ..+.+|||+|.|
T Consensus 74 ~~a~~~ilvydit~~~Sf~~~~~w~~~i~~~~~~~~~iilVGNK~DL~~~r~V~~~~~~~~a~~~~~~~~~E~SAk~~~n 153 (165)
T cd01864 74 RSANGAIIAYDITRRSSFESVPHWIEEVEKYGASNVVLLLIGNKCDLEEQREVLFEEACTLAEKNGMLAVLETSAKESQN 153 (165)
T ss_pred ECCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHCCCCHHHHHHHHHHCCCCEEEEECCCCCCC
T ss_conf 21566699713899899999999999999876999843888772376862899999999999983997699978885819
Q ss_pred HHHHHHHHHHH
Q ss_conf 58999999999
Q gi|254780809|r 351 LEELINKIKSI 361 (440)
Q Consensus 351 i~~L~~~I~~~ 361 (440)
++++-+.|.+.
T Consensus 154 V~e~F~~la~~ 164 (165)
T cd01864 154 VEEAFLLMATE 164 (165)
T ss_pred HHHHHHHHHHH
T ss_conf 89999999984
No 144
>cd04107 Rab32_Rab38 Rab38/Rab32 subfamily. Rab32 and Rab38 are members of the Rab family of small GTPases. Human Rab32 was first identified in platelets but it is expressed in a variety of cell types, where it functions as an A-kinase anchoring protein (AKAP). Rab38 has been shown to be melanocyte-specific. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.37 E-value=3.7e-12 Score=104.17 Aligned_cols=135 Identities=16% Similarity=0.177 Sum_probs=91.6
Q ss_pred CCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCC-CEEECCCCCCCC-C--EEEEEEECCHHCCCCHHHHHHHHHHHHHH
Q ss_conf 3024311466318889999855200023454687-211000124568-3--58999508100024103566667888998
Q gi|254780809|r 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGT-TRDVLTIDLDLE-G--YLVKISDTAGIRETDDIVEKEGIKRTFLE 295 (440)
Q Consensus 220 ~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GT-TRD~i~~~~~i~-g--~~~~l~DTaGir~t~d~IE~~GI~ra~~~ 295 (440)
+||+++|.+.||||||+++++...- ..++.-| .-|.-...+.++ | +.+.+.||||-..-.. .....
T Consensus 1 fKvvllGd~gVGKTsLi~rf~~~~F--~~~y~~Tig~df~~k~i~~~~~~~v~l~iwDtaGqe~~~~--------l~~~y 70 (201)
T cd04107 1 LKVLVIGDLGVGKTSIIKRYVHGIF--SQHYKATIGVDFALKVIEWDPNTVVRLQLWDIAGQERFGG--------MTRVY 70 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHHHCCC--CCCCCCCCCEEEEEEEEEECCCEEEEEEEEECCCCCCCCC--------CHHHH
T ss_conf 9799999999789999999982999--9988887567789989996798199999986899832220--------03755
Q ss_pred HHHHCCEEECCCCCCHHHHHH----------------HCCCCCCCCCCCCCCCCCCCH----------HH----HHHHHH
Q ss_conf 503011020135898566343----------------128985322223334465420----------00----001333
Q gi|254780809|r 296 VENADLILLLKEINSKKEISF----------------PKNIDFIFIGTKSDLYSTYTE----------EY----DHLISS 345 (440)
Q Consensus 296 i~~aDlil~v~D~~~~~~~~~----------------~~~~~~i~V~NK~Dl~~~~~~----------~~----~~~ISa 345 (440)
...|+.+++|+|.+++..+.. ....|+++|.||+||...... .. .+.+||
T Consensus 71 ~~~a~~~ilvydvt~~~Sf~~l~~w~~~i~~~~~~~~~~~ipiilVgNK~DL~~~~~v~~ee~~~~a~~~~~~~~~EtSA 150 (201)
T cd04107 71 YRGAVGAIIVFDVTRPSTFEAVLKWKADLDSKVTLPNGEPIPCLLLANKCDLKKRLAKDGEQMDQFCKENGFIGWFETSA 150 (201)
T ss_pred CCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHCCCCEEEEECC
T ss_conf 55776479998279889999899999999998621378987189986655641125689999999999779980999779
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q ss_conf 3232358999999999632
Q gi|254780809|r 346 FTGEGLEELINKIKSILSN 364 (440)
Q Consensus 346 ktg~Gi~~L~~~I~~~l~~ 364 (440)
|+|.|++++.+.|.+.+-.
T Consensus 151 ktg~nV~e~F~~l~~~i~~ 169 (201)
T cd04107 151 KEGINIEEAMRFLVKNILA 169 (201)
T ss_pred CCCCCHHHHHHHHHHHHHH
T ss_conf 9994989999999999986
No 145
>cd01865 Rab3 Rab3 subfamily. The Rab3 subfamily contains Rab3A, Rab3B, Rab3C, and Rab3D. All four isoforms were found in mouse brain and endocrine tissues, with varying levels of expression. Rab3A, Rab3B, and Rab3C localized to synaptic and secretory vesicles; Rab3D was expressed at high levels only in adipose tissue, exocrine glands, and the endocrine pituitary, where it is localized to cytoplasmic secretory granules. Rab3 appears to control Ca2+-regulated exocytosis. The appropriate GDP/GTP exchange cycle of Rab3A is required for Ca2+-regulated exocytosis to occur, and interaction of the GTP-bound form of Rab3A with effector molecule(s) is widely believed to be essential for this process. Functionally, most studies point toward a role for Rab3 in the secretion of hormones and neurotransmitters. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promot
Probab=99.37 E-value=3e-12 Score=104.77 Aligned_cols=134 Identities=19% Similarity=0.236 Sum_probs=93.3
Q ss_pred CCEEEECCCCCCHHHHHHHHHCCHHCCCCCC-CCCCEEECCCCCCCCC--EEEEEEECCHHCCCCHHHHHHHHHHHHHHH
Q ss_conf 3024311466318889999855200023454-6872110001245683--589995081000241035666678889985
Q gi|254780809|r 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDI-PGTTRDVLTIDLDLEG--YLVKISDTAGIRETDDIVEKEGIKRTFLEV 296 (440)
Q Consensus 220 ~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~-~GTTRD~i~~~~~i~g--~~~~l~DTaGir~t~d~IE~~GI~ra~~~i 296 (440)
+||+++|.++||||||+++++...- ..++ |-..-|+....+.+++ +.+.+.||||--.-. .......
T Consensus 2 ~KivllGd~~VGKTsli~r~~~~~f--~~~y~~Tig~~~~~k~i~~~~~~i~l~iwDtaGqe~~~--------~l~~~y~ 71 (165)
T cd01865 2 FKLLIIGNSSVGKTSFLFRYADDSF--TSAFVSTVGIDFKVKTVFRNDKRVKLQIWDTAGQERYR--------TITTAYY 71 (165)
T ss_pred EEEEEECCCCCCHHHHHHHHHCCCC--CCCCCCCCCEEEEEEEEEECCEEEEEEEEECCCCCCCC--------CCHHHHH
T ss_conf 8999999999688999999924988--99768876378799999999999999999699983455--------4415441
Q ss_pred HHHCCEEECCCCCCHHHHHH-------H-----CCCCCCCCCCCCCCCCCCCHH-------------HHHHHHHHHHHHH
Q ss_conf 03011020135898566343-------1-----289853222233344654200-------------0001333323235
Q gi|254780809|r 297 ENADLILLLKEINSKKEISF-------P-----KNIDFIFIGTKSDLYSTYTEE-------------YDHLISSFTGEGL 351 (440)
Q Consensus 297 ~~aDlil~v~D~~~~~~~~~-------~-----~~~~~i~V~NK~Dl~~~~~~~-------------~~~~ISaktg~Gi 351 (440)
..||.+++|+|.+++..... . .+.|+++|.||+||.+..... .-+.+|||+|.|+
T Consensus 72 ~~a~~~ilvydit~~~Sf~~~~~w~~~i~~~~~~~~~iilvgNK~DL~~~r~v~~~~~~~~a~~~~~~~~E~SAk~~~nV 151 (165)
T cd01865 72 RGAMGFILMYDITNEESFNAVQDWSTQIKTYSWDNAQVILVGNKCDMEDERVVSSERGRQLADQLGFEFFEASAKENINV 151 (165)
T ss_pred HCCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHCCCCCHHHHHHHHHHCCCEEEEECCCCCCCH
T ss_conf 13544899851788799999999999999868987259996024235551889999999999986997999768989088
Q ss_pred HHHHHHHHHHHH
Q ss_conf 899999999963
Q gi|254780809|r 352 EELINKIKSILS 363 (440)
Q Consensus 352 ~~L~~~I~~~l~ 363 (440)
+++.+.|.+.+-
T Consensus 152 ~e~F~~l~~~i~ 163 (165)
T cd01865 152 KQVFERLVDIIC 163 (165)
T ss_pred HHHHHHHHHHHH
T ss_conf 999999999996
No 146
>cd04143 Rhes_like Rhes_like subfamily. This subfamily includes Rhes (Ras homolog enriched in striatum) and Dexras1/AGS1 (activator of G-protein signaling 1). These proteins are homologous, but exhibit significant differences in tissue distribution and subcellular localization. Rhes is found primarily in the striatum of the brain, but is also expressed in other areas of the brain, such as the cerebral cortex, hippocampus, inferior colliculus, and cerebellum. Rhes expression is controlled by thyroid hormones. In rat PC12 cells, Rhes is farnesylated and localizes to the plasma membrane. Rhes binds and activates PI3K, and plays a role in coupling serpentine membrane receptors with heterotrimeric G-protein signaling. Rhes has recently been shown to be reduced under conditions of dopamine supersensitivity and may play a role in determining dopamine receptor sensitivity. Dexras1/AGS1 is a dexamethasone-induced Ras protein that is expressed primarily in the brain, with low expression l
Probab=99.36 E-value=2.5e-12 Score=105.36 Aligned_cols=134 Identities=19% Similarity=0.275 Sum_probs=94.0
Q ss_pred CCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCCEEECCCCCCCCCE--EEEEEECCHHCCCCHHHHHHHHHHHHHHHH
Q ss_conf 302431146631888999985520002345468721100012456835--899950810002410356666788899850
Q gi|254780809|r 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY--LVKISDTAGIRETDDIVEKEGIKRTFLEVE 297 (440)
Q Consensus 220 ~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTTRD~i~~~~~i~g~--~~~l~DTaGir~t~d~IE~~GI~ra~~~i~ 297 (440)
+||+++|.++||||||+++++...= ..++.-|.-|.-...+.++|. .+.+.||||-..-.. .......
T Consensus 1 yKIvvlGdsgVGKTSLi~Rf~~~~F--~~~y~pTi~d~~~k~i~i~g~~v~L~IwDTaGqe~f~s--------l~~~y~~ 70 (247)
T cd04143 1 YRMVVLGASKVGKTAIVSRFLGGRF--EEQYTPTIEDFHRKLYSIRGEVYQLDILDTSGNHPFPA--------MRRLSIL 70 (247)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCC--CCCCCCCHHHEEEEEEEECCEEEEEEEEECCCCCCCCC--------CHHHHHH
T ss_conf 9799999899789999999964968--99878883531889999999999999996766536874--------4201312
Q ss_pred HHCCEEECCCCCCHHHHHH---------------------HCCCCCCCCCCCCCCCCCCCH---H-----------HHHH
Q ss_conf 3011020135898566343---------------------128985322223334465420---0-----------0001
Q gi|254780809|r 298 NADLILLLKEINSKKEISF---------------------PKNIDFIFIGTKSDLYSTYTE---E-----------YDHL 342 (440)
Q Consensus 298 ~aDlil~v~D~~~~~~~~~---------------------~~~~~~i~V~NK~Dl~~~~~~---~-----------~~~~ 342 (440)
.+|.+++|+|.++...++. ..+.|+++|.||+||.....- + .-+.
T Consensus 71 ~a~~~IlVYDITnr~SFe~v~~w~~~I~e~k~~~~~~~~~~~~vpiiLVGNK~DL~~~R~Vs~eEa~~~~A~~~~~~f~E 150 (247)
T cd04143 71 TGDVFILVFSLDNRESFEEVCRLREQILETKSCLKNKTKENVKIPMVICGNKADRDFPREVQRDEVEQLVGGDENCAYFE 150 (247)
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCHHCCCCCHHHHHHHHHHHCCCEEEE
T ss_conf 17789999979987899989999999998640010013578887589986655432017879999999999768987998
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q ss_conf 333323235899999999963
Q gi|254780809|r 343 ISSFTGEGLEELINKIKSILS 363 (440)
Q Consensus 343 ISaktg~Gi~~L~~~I~~~l~ 363 (440)
+|||+|.|++++-..+.....
T Consensus 151 tSAKt~~NV~E~F~~L~~~~~ 171 (247)
T cd04143 151 VSAKKNSNLDEMFRALFSLAK 171 (247)
T ss_pred CCCCCCCCHHHHHHHHHHHCC
T ss_conf 878999498999999998549
No 147
>cd04132 Rho4_like Rho4-like subfamily. Rho4 is a GTPase that controls septum degradation by regulating secretion of Eng1 or Agn1 during cytokinesis. Rho4 also plays a role in cell morphogenesis. Rho4 regulates septation and cell morphology by controlling the actin cytoskeleton and cytoplasmic microtubules. The localization of Rho4 is modulated by Rdi1, which may function as a GDI, and by Rga9, which is believed to function as a GAP. In S. pombe, both Rho4 deletion and Rho4 overexpression result in a defective cell wall, suggesting a role for Rho4 in maintaining cell wall integrity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.36 E-value=5.2e-12 Score=103.11 Aligned_cols=135 Identities=21% Similarity=0.250 Sum_probs=89.5
Q ss_pred CEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCC-EEECCCCCCCCCE--EEEEEECCHHCCCCHHHHHHHHHHHHHHHH
Q ss_conf 0243114663188899998552000234546872-1100012456835--899950810002410356666788899850
Q gi|254780809|r 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT-RDVLTIDLDLEGY--LVKISDTAGIRETDDIVEKEGIKRTFLEVE 297 (440)
Q Consensus 221 ~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTT-RD~i~~~~~i~g~--~~~l~DTaGir~t~d~IE~~GI~ra~~~i~ 297 (440)
+|+++|.++||||||++++++.+= ..++.-|. -|+.......+|. .+.+.||||-.+-.. + ......
T Consensus 2 KivlvGd~~VGKTsli~r~~~~~F--~~~~~pTi~~~~~~~~~~~~~~~v~l~iwDtaG~e~~~~------l--~~~~~~ 71 (187)
T cd04132 2 KIVVVGDGGCGKTCLLIVYSQGKF--PEEYVPTVFENYVTNIQGPNGKIIELALWDTAGQEEYDR------L--RPLSYP 71 (187)
T ss_pred EEEEECCCCCCHHHHHHHHHHCCC--CCCCCCCEEEEEEEEEEEECCEEEEEEEEECCCCCCCCC------C--HHHHHH
T ss_conf 899999499769999999963989--997589664799999995499899999996999711053------4--344530
Q ss_pred HHCCEEECCCCCCHHHHH--------H----HCCCCCCCCCCCCCCCCCCCH--------------H----HHHHHHHHH
Q ss_conf 301102013589856634--------3----128985322223334465420--------------0----000133332
Q gi|254780809|r 298 NADLILLLKEINSKKEIS--------F----PKNIDFIFIGTKSDLYSTYTE--------------E----YDHLISSFT 347 (440)
Q Consensus 298 ~aDlil~v~D~~~~~~~~--------~----~~~~~~i~V~NK~Dl~~~~~~--------------~----~~~~ISakt 347 (440)
.||.+++|+|.+++..+. . ..+.|+++|.||+||...... . .-+.+||++
T Consensus 72 ~a~~~ilvydit~~~Sf~~i~~~W~~~i~~~~~~~piilVgnK~DL~~~~~~~~~v~~e~~~~~a~~~~~~~y~EtSAk~ 151 (187)
T cd04132 72 DVDVLLICYAVDNPTSLDNVEDKWFPEVNHFCPGTPIMLVGLKTDLRKDKNLDRKVTPAQAESVAKKQGAFAYLECSAKT 151 (187)
T ss_pred HCCEEEEEECCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHCCCCCCCHHHHHHHHHHCCCCEEEEECCCC
T ss_conf 03488895036876779999999999999868999979999872212212237657899999999985997899957688
Q ss_pred HHHHHHHHHHHHHHHHHH
Q ss_conf 323589999999996322
Q gi|254780809|r 348 GEGLEELINKIKSILSNK 365 (440)
Q Consensus 348 g~Gi~~L~~~I~~~l~~~ 365 (440)
|.|++++.+.+.+.+-..
T Consensus 152 g~nV~e~F~~l~~~il~~ 169 (187)
T cd04132 152 MENVEEVFDTAIEEALKK 169 (187)
T ss_pred CCCHHHHHHHHHHHHHHH
T ss_conf 929899999999999854
No 148
>cd04106 Rab23_lke Rab23-like subfamily. Rab23 is a member of the Rab family of small GTPases. In mouse, Rab23 has been shown to function as a negative regulator in the sonic hedgehog (Shh) signalling pathway. Rab23 mediates the activity of Gli2 and Gli3, transcription factors that regulate Shh signaling in the spinal cord, primarily by preventing Gli2 activation in the absence of Shh ligand. Rab23 also regulates a step in the cytoplasmic signal transduction pathway that mediates the effect of Smoothened (one of two integral membrane proteins that are essential components of the Shh signaling pathway in vertebrates). In humans, Rab23 is expressed in the retina. Mice contain an isoform that shares 93% sequence identity with the human Rab23 and an alternative splicing isoform that is specific to the brain. This isoform causes the murine open brain phenotype, indicating it may have a role in the development of the central nervous system. GTPase activating proteins (GAPs) interact with G
Probab=99.36 E-value=3.2e-12 Score=104.55 Aligned_cols=132 Identities=22% Similarity=0.207 Sum_probs=90.4
Q ss_pred CCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCC-EEECCCCCC--CCCE--EEEEEECCHHCCCCHHHHHHHHHHHHH
Q ss_conf 30243114663188899998552000234546872-110001245--6835--899950810002410356666788899
Q gi|254780809|r 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT-RDVLTIDLD--LEGY--LVKISDTAGIRETDDIVEKEGIKRTFL 294 (440)
Q Consensus 220 ~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTT-RD~i~~~~~--i~g~--~~~l~DTaGir~t~d~IE~~GI~ra~~ 294 (440)
+||+++|.++||||||+.+++...= ..++.-|. -|+....+. ..|. .+.+.||||-.+-.. ....
T Consensus 1 iKivvlGd~~VGKTsLi~r~~~~~f--~~~y~~Tig~~~~~k~i~~~~~~~~v~l~iwDtaG~e~~~~--------l~~~ 70 (162)
T cd04106 1 IKVIVVGNGNVGKSSMIQRFVKGIF--TKDYKKTIGVDFLEKQIFLRQSDEDVRLMLWDTAGQEEFDA--------ITKA 70 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHHCCC--CCCCCCCCCCEEEEEEEEECCCCEEEEEEEEECCCCCCCCC--------CHHH
T ss_conf 9899999999889999999984968--98768855625788789986799799999997899701341--------5245
Q ss_pred HHHHHCCEEECCCCCCHHHHHH-----------HCCCCCCCCCCCCCCCCCCCHH-------------HHHHHHHHHHHH
Q ss_conf 8503011020135898566343-----------1289853222233344654200-------------000133332323
Q gi|254780809|r 295 EVENADLILLLKEINSKKEISF-----------PKNIDFIFIGTKSDLYSTYTEE-------------YDHLISSFTGEG 350 (440)
Q Consensus 295 ~i~~aDlil~v~D~~~~~~~~~-----------~~~~~~i~V~NK~Dl~~~~~~~-------------~~~~ISaktg~G 350 (440)
....||.+++|+|.+++..... ..+.|+++|.||+||....... .-+.+|||+|.|
T Consensus 71 ~~~~a~~~ilvydvt~~~Sf~~l~~w~~~~~~~~~~~piilVgNK~DL~~~r~V~~~e~~~~a~~~~~~~~E~SAk~~~n 150 (162)
T cd04106 71 YYRGAQACILVFSTTDRESFEAIESWKEKVEAECGDIPMVLVQTKIDLLDQAVITNEEAEALAKRLQLPLFRTSVKDDFN 150 (162)
T ss_pred HHHHHCCEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHCCCCCHHHHHHHHHHCCCEEEEECCCCCCC
T ss_conf 61230312688406988999999999999997669962999840544410177899999999998698799986888829
Q ss_pred HHHHHHHHHHH
Q ss_conf 58999999999
Q gi|254780809|r 351 LEELINKIKSI 361 (440)
Q Consensus 351 i~~L~~~I~~~ 361 (440)
++++-+.|.+.
T Consensus 151 V~e~F~~la~k 161 (162)
T cd04106 151 VTELFEYLAEK 161 (162)
T ss_pred HHHHHHHHHHH
T ss_conf 89999999960
No 149
>cd04111 Rab39 Rab39 subfamily. Found in eukaryotes, Rab39 is mainly found in epithelial cell lines, but is distributed widely in various human tissues and cell lines. It is believed to be a novel Rab protein involved in regulating Golgi-associated vesicular transport during cellular endocytosis. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-terminus, with sequence motifs CC, CXC, or CCX. Lipid binding is essential for membrane attachment, a key feature of most Rab proteins.
Probab=99.35 E-value=4.6e-12 Score=103.49 Aligned_cols=137 Identities=25% Similarity=0.359 Sum_probs=92.2
Q ss_pred CCEEEECCCCCCHHHHHHHHHCCHHCCCCCC-CCCCEEECCCCCCCC-C--EEEEEEECCHHCCCCHHHHHHHHHHHHHH
Q ss_conf 3024311466318889999855200023454-687211000124568-3--58999508100024103566667888998
Q gi|254780809|r 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDI-PGTTRDVLTIDLDLE-G--YLVKISDTAGIRETDDIVEKEGIKRTFLE 295 (440)
Q Consensus 220 ~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~-~GTTRD~i~~~~~i~-g--~~~~l~DTaGir~t~d~IE~~GI~ra~~~ 295 (440)
+||+++|.+.||||||+++++...-. ..+ |-.-.|.....+.+. | +.+.+.||||-..-.. -+...
T Consensus 3 fKivllGd~~VGKTsL~~rf~~~~F~--~~~~~Tig~df~~k~i~i~dg~~v~l~IwDTaGqe~~~s--------i~~~y 72 (211)
T cd04111 3 FRLIVIGDSTVGKSSLLKRFTEGRFA--EVSDPTVGVDFFSRLIEIEPGVRIKLQLWDTAGQERFRS--------ITRSY 72 (211)
T ss_pred EEEEEECCCCCCHHHHHHHHHHCCCC--CCCCCCCCEEEEEEEEEECCCCEEEEEEEECCCCCCCCC--------CHHHH
T ss_conf 99999999996199999999819999--986872016889989997799599999997988634564--------42877
Q ss_pred HHHHCCEEECCCCCCHHHHHH-------------HCCCCCCCCCCCCCCCCCCCHH-------------HHHHHHHHHHH
Q ss_conf 503011020135898566343-------------1289853222233344654200-------------00013333232
Q gi|254780809|r 296 VENADLILLLKEINSKKEISF-------------PKNIDFIFIGTKSDLYSTYTEE-------------YDHLISSFTGE 349 (440)
Q Consensus 296 i~~aDlil~v~D~~~~~~~~~-------------~~~~~~i~V~NK~Dl~~~~~~~-------------~~~~ISaktg~ 349 (440)
...|+.+++|+|.+++..+.. ....++++|.||+||.....-. .-+.+|||+|.
T Consensus 73 yr~a~g~ilVyDvt~~~SF~~l~~W~~ei~~~~~~~~~~iiLVGNK~DL~~~R~Vs~ee~~~~A~~~~~~f~EtSAK~g~ 152 (211)
T cd04111 73 YRNSVGVLLVFDITNRESFEHVHDWLEEARSHIQPHRPVFILVGHKCDLESQRQVTREEAEKLAKDLGMKYIETSARTGD 152 (211)
T ss_pred HHHCCEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCHHHHCCCCHHHHHHHHHHHCCEEEEECCCCCC
T ss_conf 42124468971477779999999999999997498885389887423128567889999999999839979997599981
Q ss_pred HHHHHHHHHHHHHHHHC
Q ss_conf 35899999999963220
Q gi|254780809|r 350 GLEELINKIKSILSNKF 366 (440)
Q Consensus 350 Gi~~L~~~I~~~l~~~~ 366 (440)
|++++-+.|.+.+-...
T Consensus 153 nV~e~F~~la~~i~~~~ 169 (211)
T cd04111 153 NVEEAFELLTQEIYERI 169 (211)
T ss_pred CHHHHHHHHHHHHHHHH
T ss_conf 98999999999999998
No 150
>cd01900 YchF YchF subfamily. YchF is a member of the Obg family, which includes four other subfamilies of GTPases: Obg, DRG, Ygr210, and NOG1. Obg is an essential gene that is involved in DNA replication in C. crescentus and Streptomyces griseus and is associated with the ribosome. Several members of the family, including YchF, possess the TGS domain related to the RNA-binding proteins. Experimental data and genomic analysis suggest that YchF may be part of a nucleoprotein complex and may function as a GTP-dependent translational factor.
Probab=99.35 E-value=6.4e-12 Score=102.51 Aligned_cols=89 Identities=25% Similarity=0.273 Sum_probs=68.7
Q ss_pred EEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCCEEECCCCCCCCC---------------E--EEEEEECCHHCCCCHHH
Q ss_conf 243114663188899998552000234546872110001245683---------------5--89995081000241035
Q gi|254780809|r 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG---------------Y--LVKISDTAGIRETDDIV 284 (440)
Q Consensus 222 v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTTRD~i~~~~~i~g---------------~--~~~l~DTaGir~t~d~I 284 (440)
|.|+|.||||||||||+|++.+. -..++|.+|.|...+.+.+.. + .+.|+|.||+-.....=
T Consensus 1 ~GivGlpnvGKstlFnalT~~~~-~~~nypf~ti~pn~g~v~VpD~Rl~~L~~~~~p~k~i~a~vefvDIaGLvkgAs~G 79 (274)
T cd01900 1 IGIVGLPNVGKSTLFNALTKAGA-EAANYPFCTIEPNVGIVPVPDERLDKLAEIVKPKKIVPATIEFVDIAGLVKGASKG 79 (274)
T ss_pred CCEECCCCCCHHHHHHHHHCCCC-CCCCCCCCCCCCEEEEEECCCHHHHHHHHHHCCCCEEEEEEEEEECCCCCCCCCCC
T ss_conf 95647899988999999977998-74589977726805899677565889987317765123578998546556775236
Q ss_pred HHHHHHHHHHHHHHHCCEEECCCCCCHH
Q ss_conf 6666788899850301102013589856
Q gi|254780809|r 285 EKEGIKRTFLEVENADLILLLKEINSKK 312 (440)
Q Consensus 285 E~~GI~ra~~~i~~aDlil~v~D~~~~~ 312 (440)
|.+| .+-+..+.++|.+++|+.+.+..
T Consensus 80 eGLG-N~FL~~Ir~vDai~hVVR~F~d~ 106 (274)
T cd01900 80 EGLG-NKFLSHIREVDAIAHVVRCFEDD 106 (274)
T ss_pred CCCC-HHHHHHHHHCCEEEEEHHHCCCC
T ss_conf 7650-89999987346346532111577
No 151
>cd04109 Rab28 Rab28 subfamily. First identified in maize, Rab28 has been shown to be a late embryogenesis-abundant (Lea) protein that is regulated by the plant hormone abcisic acid (ABA). In Arabidopsis, Rab28 is expressed during embryo development and is generally restricted to provascular tissues in mature embryos. Unlike maize Rab28, it is not ABA-inducible. Characterization of the human Rab28 homolog revealed two isoforms, which differ by a 95-base pair insertion, producing an alternative sequence for the 30 amino acids at the C-terminus. The two human isoforms are presumbly the result of alternative splicing. Since they differ at the C-terminus but not in the GTP-binding region, they are predicted to be targeted to different cellular locations. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs
Probab=99.35 E-value=5.2e-12 Score=103.13 Aligned_cols=135 Identities=23% Similarity=0.316 Sum_probs=93.4
Q ss_pred CCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCC-EEECCCCCCCCC---EEEEEEECCHHCCCCHHHHHHHHHHHHHH
Q ss_conf 30243114663188899998552000234546872-110001245683---58999508100024103566667888998
Q gi|254780809|r 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT-RDVLTIDLDLEG---YLVKISDTAGIRETDDIVEKEGIKRTFLE 295 (440)
Q Consensus 220 ~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTT-RD~i~~~~~i~g---~~~~l~DTaGir~t~d~IE~~GI~ra~~~ 295 (440)
+||+++|.+.||||||+++++... -..++.-|. -|+-...+.+.| +.+.+.||||-..-. ......
T Consensus 1 ~KvvllGd~~VGKTSli~rf~~~~--F~~~y~~TiG~d~~~k~i~i~~~~~v~l~iwDtaGqe~~~--------~~~~~y 70 (215)
T cd04109 1 FKIVVLGDGAVGKTSLCRRFAKEG--FGKSYKQTIGLDFFSKRVTLPGNLNVTLQVWDIGGQSIGG--------KMLDKY 70 (215)
T ss_pred CEEEEECCCCCCHHHHHHHHHHCC--CCCCCCCCCCEEEEEEEEEECCCCEEEEEEEECCCCCCHH--------HHHHHH
T ss_conf 979999999970999999997498--9887788655788999999879946999999699850023--------789999
Q ss_pred HHHHCCEEECCCCCCHHHHHH-------H--------CCCCCCCCCCCCCCCCCCCHH-------------HHHHHHHHH
Q ss_conf 503011020135898566343-------1--------289853222233344654200-------------000133332
Q gi|254780809|r 296 VENADLILLLKEINSKKEISF-------P--------KNIDFIFIGTKSDLYSTYTEE-------------YDHLISSFT 347 (440)
Q Consensus 296 i~~aDlil~v~D~~~~~~~~~-------~--------~~~~~i~V~NK~Dl~~~~~~~-------------~~~~ISakt 347 (440)
+..||.+++|+|.++...+.. . ...++++|.||+||.....-. ..+.+|||+
T Consensus 71 ~~~a~~~ilVYDitn~~SF~~l~~W~~~i~~~~~~~~~~~~iiLVGNK~DL~~~R~Vs~ee~~~~A~~~g~~f~E~SAkt 150 (215)
T cd04109 71 IYGAHAVFLVYDVTNSQSFENLEDWYSMVRKVLKSSETQPLVVLVGNKTDLEHNRTVKDDKHARFAQANGMESCLVSAKT 150 (215)
T ss_pred HHHHCCEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCHHHHCCCCHHHHHHHHHHCCCEEEEEECCC
T ss_conf 97515137741478678999899999999998504577852999975454286477699999999998299899983899
Q ss_pred HHHHHHHHHHHHHHHHH
Q ss_conf 32358999999999632
Q gi|254780809|r 348 GEGLEELINKIKSILSN 364 (440)
Q Consensus 348 g~Gi~~L~~~I~~~l~~ 364 (440)
|+|++++-..|...+-+
T Consensus 151 g~nV~e~F~~la~~i~~ 167 (215)
T cd04109 151 GDRVNLLFQQLAAELLG 167 (215)
T ss_pred CCCHHHHHHHHHHHHHC
T ss_conf 94989999999999976
No 152
>cd04115 Rab33B_Rab33A Rab33B/Rab33A subfamily. Rab33B is ubiquitously expressed in mouse tissues and cells, where it is localized to the medial Golgi cisternae. It colocalizes with alpha-mannose II. Together with the other cisternal Rabs, Rab6A and Rab6A', it is believed to regulate the Golgi response to stress and is likely a molecular target in stress-activated signaling pathways. Rab33A (previously known as S10) is expressed primarily in the brain and immune system cells. In humans, it is located on the X chromosome at Xq26 and its expression is down-regulated in tuberculosis patients. Experimental evidence suggests that Rab33A is a novel CD8+ T cell factor that likely plays a role in tuberculosis disease processes. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine
Probab=99.35 E-value=6.5e-12 Score=102.47 Aligned_cols=135 Identities=19% Similarity=0.274 Sum_probs=92.8
Q ss_pred CCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCC-EEECCCCCCCCC--EEEEEEECCHHCCCCHHHHHHHHHHHHHHH
Q ss_conf 30243114663188899998552000234546872-110001245683--589995081000241035666678889985
Q gi|254780809|r 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT-RDVLTIDLDLEG--YLVKISDTAGIRETDDIVEKEGIKRTFLEV 296 (440)
Q Consensus 220 ~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTT-RD~i~~~~~i~g--~~~~l~DTaGir~t~d~IE~~GI~ra~~~i 296 (440)
+||+++|.++||||||+.++++..= ..++.-|. -|+....+.++| +.+.+.||||--.-. -.......
T Consensus 3 ~Kiv~lGd~~VGKTsli~r~~~~~F--~~~~~~Tig~d~~~k~i~v~~~~v~l~iwDtaG~e~~~-------~s~~~~~~ 73 (170)
T cd04115 3 FKIIVIGDSNVGKTCLTYRFCAGRF--PERTEATIGVDFRERTVEIDGERIKVQLWDTAGQERFR-------KSMVQHYY 73 (170)
T ss_pred EEEEEECCCCCCHHHHHHHHHCCCC--CCCCCCCEEEEEEEEEEEECCEEEEEEEEECCCCHHHH-------HHHHHHHH
T ss_conf 9999999799779999999953988--99878863078789999999999999999778853056-------77789984
Q ss_pred HHHCCEEECCCCCCHHHHHH-------------HCCCCCCCCCCCCCCCCCCCHH-------------HHHHHHHH---H
Q ss_conf 03011020135898566343-------------1289853222233344654200-------------00013333---2
Q gi|254780809|r 297 ENADLILLLKEINSKKEISF-------------PKNIDFIFIGTKSDLYSTYTEE-------------YDHLISSF---T 347 (440)
Q Consensus 297 ~~aDlil~v~D~~~~~~~~~-------------~~~~~~i~V~NK~Dl~~~~~~~-------------~~~~ISak---t 347 (440)
..||.+++|+|.+++..... ....|+++|.||+||....... .-+.+||| +
T Consensus 74 ~~a~~~ilvydvt~~~Sf~~~~~w~~~i~~~~~~~~~p~vlVGNK~DL~~~r~Vs~~e~~~~a~~~~~~~~E~SAK~~~~ 153 (170)
T cd04115 74 RNVHAVVFVYDVTNMASFHSLPSWIEECEQHSLPNEVPRILVGNKCDLREQIQVPTDLAQRFADAHSMPLFETSAKDPSE 153 (170)
T ss_pred CCCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCHHHCCCCHHHHHHHHHHCCCEEEEECCCCCCC
T ss_conf 57735799950474767999999999999865888997999999821341178799999999997799999988899851
Q ss_pred HHHHHHHHHHHHHHHH
Q ss_conf 3235899999999963
Q gi|254780809|r 348 GEGLEELINKIKSILS 363 (440)
Q Consensus 348 g~Gi~~L~~~I~~~l~ 363 (440)
|+|++++-..|.+.+.
T Consensus 154 ~~nV~~~F~~la~~i~ 169 (170)
T cd04115 154 NDHVEAIFMTLAHKLK 169 (170)
T ss_pred CCCHHHHHHHHHHHHC
T ss_conf 7088999999999960
No 153
>cd04134 Rho3 Rho3 subfamily. Rho3 is a member of the Rho family found only in fungi. Rho3 is believed to regulate cell polarity by interacting with the diaphanous/formin family protein For3 to control both the actin cytoskeleton and microtubules. Rho3 is also believed to have a direct role in exocytosis that is independent of its role in regulating actin polarity. The function in exocytosis may be two-pronged: first, in the transport of post-Golgi vesicles from the mother cell to the bud, mediated by myosin (Myo2); second, in the docking and fusion of vesicles to the plasma membrane, mediated by an exocyst (Exo70) protein. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins.
Probab=99.34 E-value=8.5e-12 Score=101.64 Aligned_cols=137 Identities=23% Similarity=0.299 Sum_probs=92.2
Q ss_pred CEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCCEEECCCCCCCCCE--EEEEEECCHHCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 02431146631888999985520002345468721100012456835--8999508100024103566667888998503
Q gi|254780809|r 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY--LVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298 (440)
Q Consensus 221 ~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTTRD~i~~~~~i~g~--~~~l~DTaGir~t~d~IE~~GI~ra~~~i~~ 298 (440)
||+++|-++||||||+++++...= ..++.-|.-|.-...+.++|. .+.|.||||--+-.. + .......
T Consensus 2 KivlvGd~~VGKTsli~r~~~~~F--~~~y~~Ti~~~~~~~~~v~~~~v~l~iwDTaGqe~~~~------i--~~~~y~~ 71 (189)
T cd04134 2 KVVVLGDGACGKTSLLNVFTRGYF--PQVYEPTVFENYVHDIFVDGLHIELSLWDTAGQEEFDR------L--RSLSYAD 71 (189)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCC--CCCCCCCEEEEEEEEEEECCEEEEEEEEECCCCCCCCH------H--HHHHHCC
T ss_conf 899999799769999999970999--99868837899999999999999999984778500003------5--5676437
Q ss_pred HCCEEECCCCCCHHHHHH------------HCCCCCCCCCCCCCCCCCCCHH--------------------------HH
Q ss_conf 011020135898566343------------1289853222233344654200--------------------------00
Q gi|254780809|r 299 ADLILLLKEINSKKEISF------------PKNIDFIFIGTKSDLYSTYTEE--------------------------YD 340 (440)
Q Consensus 299 aDlil~v~D~~~~~~~~~------------~~~~~~i~V~NK~Dl~~~~~~~--------------------------~~ 340 (440)
||.+++|+|.+++..+.. ..+.|+++|.||+||....... .-
T Consensus 72 a~~~ilvydi~~~~Sf~~v~~~w~~~i~~~~~~~piiLVgnK~DL~~~~~~~~~~~~~~~~~is~~eg~~~Ak~~~~~~y 151 (189)
T cd04134 72 TDVIMLCFSVDSPDSLENVESKWLGEIREHCPGVKLVLVALKCDLREARNERDDLQRYGKHTISYEEGLAVAKRINALRY 151 (189)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECHHCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHCCCEE
T ss_conf 86459999789878999999999999997497997899998800465323567776630466589999999998299789
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 013333232358999999999632203
Q gi|254780809|r 341 HLISSFTGEGLEELINKIKSILSNKFK 367 (440)
Q Consensus 341 ~~ISaktg~Gi~~L~~~I~~~l~~~~~ 367 (440)
+.+|||||+|++++.+.+.+.+-+..+
T Consensus 152 ~EtSAkt~~nV~e~F~~lar~~l~~~~ 178 (189)
T cd04134 152 LECSAKLNRGVNEAFTEAARVALNVRP 178 (189)
T ss_pred EEECCCCCCCHHHHHHHHHHHHHHCCC
T ss_conf 996806794989999999999973589
No 154
>TIGR01393 lepA GTP-binding protein LepA; InterPro: IPR006297 LepA (GUF1 in Saccaromyces) is a GTP-binding membrane protein related to EF-G and EF-Tu. Two types of phylogenetic tree, rooted by other GTP-binding proteins, suggest that eukaryotic homologs (including GUF1 of yeast) originated within the bacterial LepA family. The function of the proteins in this family are unknown. ; GO: 0005525 GTP binding.
Probab=99.34 E-value=1.9e-12 Score=106.22 Aligned_cols=140 Identities=26% Similarity=0.358 Sum_probs=97.8
Q ss_pred EEEECCCCCCHHHHHHHHHCCHHCCCCC---------------CCCCCEEECCCCCCC----CC--EEEEEEECCHHCCC
Q ss_conf 2431146631888999985520002345---------------468721100012456----83--58999508100024
Q gi|254780809|r 222 IVILGHSNAGKSSLFNALAKKDVAIVTD---------------IPGTTRDVLTIDLDL----EG--YLVKISDTAGIRET 280 (440)
Q Consensus 222 v~i~G~pN~GKSSL~N~L~~~~~aIVs~---------------~~GTTRD~i~~~~~i----~g--~~~~l~DTaGir~t 280 (440)
-+|+=.=--|||||--+|+..-.+| |+ .-|=|=-.-...+.+ +| +.++|+||||==+-
T Consensus 6 FsIIAHIDHGKSTLADRlle~T~~~-s~R~m~~Q~LD~MDlERERGITIK~qaV~l~Yk~~~DGe~Y~LNLIDTPGHVDF 84 (598)
T TIGR01393 6 FSIIAHIDHGKSTLADRLLEKTGAV-SEREMREQVLDSMDLERERGITIKAQAVRLKYKVAKDGETYVLNLIDTPGHVDF 84 (598)
T ss_pred EEEEEEECCCCCHHHHHHHHHCCCC-CCHHHHHCCCCCCCEEECCCCEEECCCEEEEEEEECCCCEEEEEEECCCCCCCC
T ss_conf 6788462489324889999861745-620254305775100000582011563475337533887889964528897212
Q ss_pred CHHHHHHHHHHHHHHHHHHCCEEECCCCCCHH--------HHHHHCCCCCCCCCCCCCCCCCCCHH--------------
Q ss_conf 10356666788899850301102013589856--------63431289853222233344654200--------------
Q gi|254780809|r 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKK--------EISFPKNIDFIFIGTKSDLYSTYTEE-------------- 338 (440)
Q Consensus 281 ~d~IE~~GI~ra~~~i~~aDlil~v~D~~~~~--------~~~~~~~~~~i~V~NK~Dl~~~~~~~-------------- 338 (440)
.=+ |.||+.+=+.| |+|+|+++-- .+.+.++..+|-|+||+||++..++.
T Consensus 85 sYE-----VSRSLAACEGA---LL~VDA~QGvEAQT~aN~YlAlE~dLeIIPViNKIDLP~Adpe~v~~eIe~~iGld~~ 156 (598)
T TIGR01393 85 SYE-----VSRSLAACEGA---LLLVDAAQGVEAQTLANVYLALENDLEIIPVINKIDLPSADPERVKKEIEEVIGLDAS 156 (598)
T ss_pred CHH-----HHHHHHHHCCE---EEEEECCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCCCC
T ss_conf 737-----88888871640---3561410323588899998875618758477825368888858999987654188964
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 00013333232358999999999632203588
Q gi|254780809|r 339 YDHLISSFTGEGLEELINKIKSILSNKFKKLP 370 (440)
Q Consensus 339 ~~~~ISaktg~Gi~~L~~~I~~~l~~~~~~~~ 370 (440)
..+.+|||||.||++|+++|.+.++....+.+
T Consensus 157 ~ai~~SAKtG~Gi~e~LEaIv~~vPpP~Gd~~ 188 (598)
T TIGR01393 157 EAILASAKTGIGIEEILEAIVKRVPPPKGDPD 188 (598)
T ss_pred CCEEEEECCCCCHHHHHHHHHHCCCCCCCCCC
T ss_conf 30387503678889998897101810011388
No 155
>cd01870 RhoA_like RhoA-like subfamily. The RhoA subfamily consists of RhoA, RhoB, and RhoC. RhoA promotes the formation of stress fibers and focal adhesions, regulating cell shape, attachment, and motility. RhoA can bind to multiple effector proteins, thereby triggering different downstream responses. In many cell types, RhoA mediates local assembly of the contractile ring, which is necessary for cytokinesis. RhoA is vital for muscle contraction; in vascular smooth muscle cells, RhoA plays a key role in cell contraction, differentiation, migration, and proliferation. RhoA activities appear to be elaborately regulated in a time- and space-dependent manner to control cytoskeletal changes. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. RhoA and RhoC are observed only in geranyl
Probab=99.33 E-value=7.1e-12 Score=102.21 Aligned_cols=133 Identities=25% Similarity=0.321 Sum_probs=90.6
Q ss_pred CCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCCEEECCCCCCCCCEE--EEEEECCHHCCCCHHHHHHHHHHHHHHHH
Q ss_conf 3024311466318889999855200023454687211000124568358--99950810002410356666788899850
Q gi|254780809|r 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL--VKISDTAGIRETDDIVEKEGIKRTFLEVE 297 (440)
Q Consensus 220 ~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTTRD~i~~~~~i~g~~--~~l~DTaGir~t~d~IE~~GI~ra~~~i~ 297 (440)
.||+++|.++||||||+.+++...= ..++.-|.=|.-...+.++|.+ +.|.||||--+-.. .......
T Consensus 2 ~Ki~liGd~~VGKTsli~r~~~~~F--~~~y~pTi~~~~~~~i~~~~~~v~l~iwDtaG~e~~~~--------~~~~~~~ 71 (175)
T cd01870 2 KKLVIVGDGACGKTCLLIVFSKDQF--PEVYVPTVFENYVADIEVDGKQVELALWDTAGQEDYDR--------LRPLSYP 71 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCC--CCCCCCCEEEEEEEEEEECCEEEEEEEEECCCCCCCCC--------CHHHHHC
T ss_conf 0999999899669999999970989--99847843689999999999999999997776613232--------4044314
Q ss_pred HHCCEEECCCCCCHHHHHH------------HCCCCCCCCCCCCCCCCCCC---------H-------------H----H
Q ss_conf 3011020135898566343------------12898532222333446542---------0-------------0----0
Q gi|254780809|r 298 NADLILLLKEINSKKEISF------------PKNIDFIFIGTKSDLYSTYT---------E-------------E----Y 339 (440)
Q Consensus 298 ~aDlil~v~D~~~~~~~~~------------~~~~~~i~V~NK~Dl~~~~~---------~-------------~----~ 339 (440)
.||.+++|+|.+++..... ..+.|+++|.||+||.+... . . .
T Consensus 72 ~a~~~ilvydi~~~~Sf~~~~~~w~~~i~~~~~~~piilVgnK~DL~~~~~~~~~~~~~~~~~V~~~eg~~~a~~~~~~~ 151 (175)
T cd01870 72 DTDVILMCFSIDSPDSLENIPEKWTPEVKHFCPNVPIILVGNKKDLRNDEHTRRELAKMKQEPVKPEEGRDMANKIGAFG 151 (175)
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCE
T ss_conf 88789999865987999999999999999729899899998724334332345666540255668999999999749978
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 00133332323589999999996
Q gi|254780809|r 340 DHLISSFTGEGLEELINKIKSIL 362 (440)
Q Consensus 340 ~~~ISaktg~Gi~~L~~~I~~~l 362 (440)
-+.+|||+|.|++++.+.+.+.+
T Consensus 152 f~EtSAk~~~nV~e~Fe~~~k~~ 174 (175)
T cd01870 152 YMECSAKTKEGVREVFEMATRAA 174 (175)
T ss_pred EEEECCCCCCCHHHHHHHHHHHH
T ss_conf 99976899979899999999986
No 156
>cd04133 Rop_like Rop subfamily. The Rop (Rho-related protein from plants) subfamily plays a role in diverse cellular processes, including cytoskeletal organization, pollen and vegetative cell growth, hormone responses, stress responses, and pathogen resistance. Rops are able to regulate several downstream pathways to amplify a specific signal by acting as master switches early in the signaling cascade. They transmit a variety of extracellular and intracellular signals. Rops are involved in establishing cell polarity in root-hair development, root-hair elongation, pollen-tube growth, cell-shape formation, responses to hormones such as abscisic acid (ABA) and auxin, responses to abiotic stresses such as oxygen deprivation, and disease resistance and disease susceptibility. An individual Rop can have a unique function or an overlapping function shared with other Rop proteins; in addition, a given Rop-regulated function can be controlled by one or multiple Rop proteins. For example,
Probab=99.33 E-value=8.6e-12 Score=101.59 Aligned_cols=134 Identities=21% Similarity=0.274 Sum_probs=93.6
Q ss_pred CCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCCEEECCCCCCCCCE--EEEEEECCHHCCCCHHHHHHHHHHHHHHHH
Q ss_conf 302431146631888999985520002345468721100012456835--899950810002410356666788899850
Q gi|254780809|r 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY--LVKISDTAGIRETDDIVEKEGIKRTFLEVE 297 (440)
Q Consensus 220 ~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTTRD~i~~~~~i~g~--~~~l~DTaGir~t~d~IE~~GI~ra~~~i~ 297 (440)
+||+++|.++||||||+.++++..= ..++.-|.-|.-...+.++|. .+.+.||||--+-. ........
T Consensus 2 iKivllGd~~VGKTsL~~rf~~~~F--~~~~~pTi~~~~~~~i~v~~~~~~l~iwDTaG~e~~~--------~l~~~~y~ 71 (176)
T cd04133 2 IKCVTVGDGAVGKTCMLICYTSNKF--PTDYIPTVFDNFSANVSVDGNTVNLGLWDTAGQEDYN--------RLRPLSYR 71 (176)
T ss_pred EEEEEECCCCCCHHHHHHHHHHCCC--CCCCCCCEEEEEEEEEEECCEEEEEEEEECCCCCCCC--------HHHHHHHC
T ss_conf 7999989999779999999965989--9986785358999999999989999999799976542--------46898726
Q ss_pred HHCCEEECCCCCCHHHHHH------------HCCCCCCCCCCCCCCCCCCC------------H-H-----------HHH
Q ss_conf 3011020135898566343------------12898532222333446542------------0-0-----------000
Q gi|254780809|r 298 NADLILLLKEINSKKEISF------------PKNIDFIFIGTKSDLYSTYT------------E-E-----------YDH 341 (440)
Q Consensus 298 ~aDlil~v~D~~~~~~~~~------------~~~~~~i~V~NK~Dl~~~~~------------~-~-----------~~~ 341 (440)
.||.+++|+|.+++..... ..+.|+++|.||+||.+... . + .-+
T Consensus 72 ~a~~~ilvydi~~~~Sf~~~~~~w~~~~~~~~~~~piilvGnK~DL~~~r~~~~~~~~~~~Vs~~e~~~~a~~~~~~~y~ 151 (176)
T cd04133 72 GADVFVLAFSLISRASYENVLKKWVPELRHYAPNVPIVLVGTKLDLRDDKQYLADHPGASPITTAQGEELRKQIGAAAYI 151 (176)
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECHHHHHCHHHHHHCCCCCCCCHHHHHHHHHHCCCCEEE
T ss_conf 78757999978987899999999999999868499889999863202122233330246777799999999977997899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 1333323235899999999963
Q gi|254780809|r 342 LISSFTGEGLEELINKIKSILS 363 (440)
Q Consensus 342 ~ISaktg~Gi~~L~~~I~~~l~ 363 (440)
..|||+|.|++++-+.+.+.+-
T Consensus 152 EtSAk~~~nV~e~F~~~~~~il 173 (176)
T cd04133 152 ECSSKTQQNVKAVFDAAIKVVL 173 (176)
T ss_pred EECCCCCCCHHHHHHHHHHHHH
T ss_conf 9478988098999999999980
No 157
>PTZ00258 GTP-binding protein; Provisional
Probab=99.33 E-value=8.3e-12 Score=101.73 Aligned_cols=92 Identities=28% Similarity=0.303 Sum_probs=68.5
Q ss_pred HCCCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCCEEECCCCCCC---------------CCE--EEEEEECCHHCCC
Q ss_conf 02302431146631888999985520002345468721100012456---------------835--8999508100024
Q gi|254780809|r 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL---------------EGY--LVKISDTAGIRET 280 (440)
Q Consensus 218 ~g~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTTRD~i~~~~~i---------------~g~--~~~l~DTaGir~t 280 (440)
..+++.|+|.||||||||||+|+..+. =+.++|.||-|...+.+.+ .-+ ++.|+|.||+=..
T Consensus 21 ~~m~iGivGlPNvGKSTlFnAlT~~~v-~~aNyPF~TIepN~gvv~VpD~Rl~~l~~~~~~kk~ipa~ve~vDIAGLV~G 99 (392)
T PTZ00258 21 NNLKMGIVGLPNVGKSTTFNALSKQQV-PAENFPFCTIDPNTARVPVPDERFDKLCQFFKPKSIVPATLDIVDIAGLVKG 99 (392)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCC-CCCCCCCCCCCCCEEEEECCCHHHHHHHHHHCCCCCEEEEEEEEECCCCCCC
T ss_conf 785567866999978999999877997-4248998887783279967845688998751877610146899973455787
Q ss_pred CHHHHHHHHHHHHHHHHHHCCEEECCCCCCH
Q ss_conf 1035666678889985030110201358985
Q gi|254780809|r 281 DDIVEKEGIKRTFLEVENADLILLLKEINSK 311 (440)
Q Consensus 281 ~d~IE~~GI~ra~~~i~~aDlil~v~D~~~~ 311 (440)
..+=|.+| .+-+..+.++|.+++|+|+...
T Consensus 100 As~G~GLG-NkFL~~iR~~DaiihVVR~F~d 129 (392)
T PTZ00258 100 ASKGEGLG-NAFLSHIRACDGIYHVVRAFED 129 (392)
T ss_pred CCCCCCCH-HHHHHHHHHCCHHHHHHHHHCC
T ss_conf 30268851-8999998840079999987245
No 158
>cd04135 Tc10 TC10 subfamily. TC10 is a Rho family protein that has been shown to induce microspike formation and neurite outgrowth in vitro. Its expression changes dramatically after peripheral nerve injury, suggesting an important role in promoting axonal outgrowth and regeneration. TC10 regulates translocation of insulin-stimulated GLUT4 in adipocytes and has also been shown to bind directly to Golgi COPI coat proteins. GTP-bound TC10 in vitro can bind numerous potential effectors. Depending on its subcellular localization and distinct functional domains, TC10 can differentially regulate two types of filamentous actin in adipocytes. TC10 mRNAs are highly expressed in three types of mouse muscle tissues: leg skeletal muscle, cardiac muscle, and uterus; they were also present in brain, with higher levels in adults than in newborns. TC10 has also been shown to play a role in regulating the expression of cystic fibrosis transmembrane conductance regulator (CFTR) through interacti
Probab=99.33 E-value=9.6e-12 Score=101.28 Aligned_cols=132 Identities=22% Similarity=0.315 Sum_probs=91.4
Q ss_pred CCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCCEEECCCCCCCCCE--EEEEEECCHHCCCCHHHHHHHHHHHHHHHH
Q ss_conf 302431146631888999985520002345468721100012456835--899950810002410356666788899850
Q gi|254780809|r 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY--LVKISDTAGIRETDDIVEKEGIKRTFLEVE 297 (440)
Q Consensus 220 ~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTTRD~i~~~~~i~g~--~~~l~DTaGir~t~d~IE~~GI~ra~~~i~ 297 (440)
+||+++|.++||||||+.++++..= ..++.-|.-|.....+.++|. .+.+.||||--+-. ........
T Consensus 1 ~Kiv~vGd~~VGKTsli~rf~~~~f--~~~y~pTi~~~~~~~i~v~~~~~~l~i~DTaG~e~~~--------~~~~~~~~ 70 (174)
T cd04135 1 LKCVVVGDGAVGKTCLLMSYANDAF--PEEYVPTVFDHYAVSVTVGGKQYLLGLYDTAGQEDYD--------RLRPLSYP 70 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHHCCC--CCCCCCEEEEEEEEEEEECCEEEEEEEEECCCCCCCH--------HHHHHHHC
T ss_conf 9899999899859999999962989--9886885752022799999999999999797640315--------56599855
Q ss_pred HHCCEEECCCCCCHHHHHH------------HCCCCCCCCCCCCCCCCCCC--------------H--------HH----
Q ss_conf 3011020135898566343------------12898532222333446542--------------0--------00----
Q gi|254780809|r 298 NADLILLLKEINSKKEISF------------PKNIDFIFIGTKSDLYSTYT--------------E--------EY---- 339 (440)
Q Consensus 298 ~aDlil~v~D~~~~~~~~~------------~~~~~~i~V~NK~Dl~~~~~--------------~--------~~---- 339 (440)
.||.+++|+|.+++..+.. ..+.|+++|.||+||.+... . +.
T Consensus 71 ~a~~~ilvydi~~~~Sf~~~~~~w~~~~~~~~~~~piilvgnK~DL~~~~~~~~~~~~~~~r~Vs~eeg~~~A~~~g~~~ 150 (174)
T cd04135 71 MTDVFLICFSVVNPASFQNVKEEWVPELKEYAPNVPYLLVGTQIDLRDDPKTLARLNDMKEKPVTVEQGQKLAKEIGAHC 150 (174)
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECHHHCCCHHHHHHHCCCCCCCCCHHHHHHHHHHCCCCE
T ss_conf 78767898437977889999999999999868499889996852300443455453004576639999999999779989
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 0013333232358999999999
Q gi|254780809|r 340 DHLISSFTGEGLEELINKIKSI 361 (440)
Q Consensus 340 ~~~ISaktg~Gi~~L~~~I~~~ 361 (440)
-+.+|||||+||+++-+.+.+.
T Consensus 151 f~E~SAkt~~nV~e~F~~~i~~ 172 (174)
T cd04135 151 YVECSALTQKGLKTVFDEAILA 172 (174)
T ss_pred EEEECCCCCCCHHHHHHHHHHH
T ss_conf 9990548794989999999999
No 159
>smart00178 SAR Sar1p-like members of the Ras-family of small GTPases. Yeast SAR1 is an essential gene required for transport of secretory proteins from the endoplasmic reticulum to the Golgi apparatus.
Probab=99.33 E-value=7.4e-12 Score=102.04 Aligned_cols=133 Identities=20% Similarity=0.211 Sum_probs=97.5
Q ss_pred HHCCCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCCEEECCCCCCCCCEEEEEEECCHHCCCCHHHHHHHHHHHHHHH
Q ss_conf 20230243114663188899998552000234546872110001245683589995081000241035666678889985
Q gi|254780809|r 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296 (440)
Q Consensus 217 ~~g~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTTRD~i~~~~~i~g~~~~l~DTaGir~t~d~IE~~GI~ra~~~i 296 (440)
+.-.+|.++|..||||||++|.|.+.+..-+.+..|.+ .+.+.+++..+.+.|..|-.... ..-....
T Consensus 15 ~ke~~ililGLd~aGKTTil~~lk~~~~~~~~PT~g~~----~e~~~~~~~~~~~wDlgG~~~~R--------~lW~~Yy 82 (184)
T smart00178 15 NKHAKILFLGLDNAGKTTLLHMLKNDRLAQHQPTQHPT----SEELAIGNIKFTTFDLGGHQQAR--------RLWKDYF 82 (184)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCC----EEEEEECCEEEEEEECCCCHHHH--------HHHHHHH
T ss_conf 66147999965889889999998069975305787886----48999999999999889877788--------9999882
Q ss_pred HHHCCEEECCCCCCHHHH-------------HHHCCCCCCCCCCCCCCCCCCCHH-----------------------HH
Q ss_conf 030110201358985663-------------431289853222233344654200-----------------------00
Q gi|254780809|r 297 ENADLILLLKEINSKKEI-------------SFPKNIDFIFIGTKSDLYSTYTEE-----------------------YD 340 (440)
Q Consensus 297 ~~aDlil~v~D~~~~~~~-------------~~~~~~~~i~V~NK~Dl~~~~~~~-----------------------~~ 340 (440)
.++|.++||+|+++...+ ...++.|++++.||.|+....... ..
T Consensus 83 ~~~~~iIfVVDssD~~r~~eak~~L~~ll~~~~l~~~PlLilaNKqDl~~a~~~~ei~~~L~L~~~~~~~~~~~~r~~~i 162 (184)
T smart00178 83 PEVNGIVYLVDAYDKERFAESKRELDALLSDEELATVPFLILGNKIDAPYAASEDELRYALGLTNTTGSKGKVGVRPLEV 162 (184)
T ss_pred CCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHCCHHHHCCCCCCCCCCEEE
T ss_conf 16758999972686889999999999986467655970999997567778999999998819512326557667763199
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q ss_conf 013333232358999999999
Q gi|254780809|r 341 HLISSFTGEGLEELINKIKSI 361 (440)
Q Consensus 341 ~~ISaktg~Gi~~L~~~I~~~ 361 (440)
...||.||+|+++-.+=|.+.
T Consensus 163 ~~~SA~tG~Gl~egl~WLs~~ 183 (184)
T smart00178 163 FMCSVVRRMGYGEGFKWLSQY 183 (184)
T ss_pred EEEECCCCCCHHHHHHHHHHH
T ss_conf 973560797869999999840
No 160
>cd01875 RhoG RhoG subfamily. RhoG is a GTPase with high sequence similarity to members of the Rac subfamily, including the regions involved in effector recognition and binding. However, RhoG does not bind to known Rac1 and Cdc42 effectors, including proteins containing a Cdc42/Rac interacting binding (CRIB) motif. Instead, RhoG interacts directly with Elmo, an upstream regulator of Rac1, in a GTP-dependent manner and forms a ternary complex with Dock180 to induce activation of Rac1. The RhoG-Elmo-Dock180 pathway is required for activation of Rac1 and cell spreading mediated by integrin, as well as for neurite outgrowth induced by nerve growth factor. Thus RhoG activates Rac1 through Elmo and Dock180 to control cell morphology. RhoG has also been shown to play a role in caveolar trafficking and has a novel role in signaling the neutrophil respiratory burst stimulated by G protein-coupled receptor (GPCR) agonists. Most Rho proteins contain a lipid modification site at the C-termin
Probab=99.33 E-value=9.2e-12 Score=101.39 Aligned_cols=139 Identities=20% Similarity=0.273 Sum_probs=94.0
Q ss_pred CCCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCCEEECCCCCCCCCE--EEEEEECCHHCCCCHHHHHHHHHHHHHHH
Q ss_conf 2302431146631888999985520002345468721100012456835--89995081000241035666678889985
Q gi|254780809|r 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY--LVKISDTAGIRETDDIVEKEGIKRTFLEV 296 (440)
Q Consensus 219 g~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTTRD~i~~~~~i~g~--~~~l~DTaGir~t~d~IE~~GI~ra~~~i 296 (440)
-+||+++|-+.||||||+.+++..+- ..++--|.-|.....+.++|. .+.|.||||--+-. . + .....
T Consensus 3 ~~KivlvGd~~VGKTsli~r~~~~~F--~~~y~pti~~~~~~~~~i~~~~v~l~iwDtaG~e~~~-~-----~--~~~~~ 72 (191)
T cd01875 3 SIKCVVVGDGAVGKTCLLICYTTNAF--PKEYIPTVFDNYSAQTAVDGRTVSLNLWDTAGQEEYD-R-----L--RTLSY 72 (191)
T ss_pred EEEEEEECCCCCCHHHHHHHHHHCCC--CCCCCCCCCEEEEEEEEECCEEEEEEEEECCCCCCHH-H-----H--HHHHH
T ss_conf 18999999999899999999972999--9864662100046789999999999998588870035-6-----7--78774
Q ss_pred HHHCCEEECCCCCCHHHHHH------------HCCCCCCCCCCCCCCCCCCCH----------------------H----
Q ss_conf 03011020135898566343------------128985322223334465420----------------------0----
Q gi|254780809|r 297 ENADLILLLKEINSKKEISF------------PKNIDFIFIGTKSDLYSTYTE----------------------E---- 338 (440)
Q Consensus 297 ~~aDlil~v~D~~~~~~~~~------------~~~~~~i~V~NK~Dl~~~~~~----------------------~---- 338 (440)
..||.+++|+|.+++..+.. ..+.|+++|.||+||.+.... .
T Consensus 73 ~~a~~~ilvfdvt~~~Sf~~v~~~w~~ei~~~~~~~piiLvGnK~DL~~~~~~~~~~~e~~~~~vs~eeg~~~a~~~~~~ 152 (191)
T cd01875 73 PQTNVFIICFSIASPSSYENVRHKWHPEVCHHCPNVPILLVGTKKDLRNDADTLKKLKEQGQAPITPQQGGALAKQIHAV 152 (191)
T ss_pred CCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHCCC
T ss_conf 47868999985797788999999999999970969978999888010234577888776413755699999999980998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 00013333232358999999999632203
Q gi|254780809|r 339 YDHLISSFTGEGLEELINKIKSILSNKFK 367 (440)
Q Consensus 339 ~~~~ISaktg~Gi~~L~~~I~~~l~~~~~ 367 (440)
.-+.+||++|.|++++.+.+.+.+-...+
T Consensus 153 ~y~EtSAkt~~nV~e~F~~l~k~il~~~~ 181 (191)
T cd01875 153 KYLECSALNQDGVKEVFAEAVRAVLNPTP 181 (191)
T ss_pred EEEECCCCCCCCHHHHHHHHHHHHHCCCC
T ss_conf 89990689896989999999999807899
No 161
>cd01871 Rac1_like Rac1-like subfamily. The Rac1-like subfamily consists of Rac1, Rac2, and Rac3 proteins, plus the splice variant Rac1b that contains a 19-residue insertion near switch II relative to Rac1. While Rac1 is ubiquitously expressed, Rac2 and Rac3 are largely restricted to hematopoietic and neural tissues respectively. Rac1 stimulates the formation of actin lamellipodia and membrane ruffles. It also plays a role in cell-matrix adhesion and cell anoikis. In intestinal epithelial cells, Rac1 is an important regulator of migration and mediates apoptosis. Rac1 is also essential for RhoA-regulated actin stress fiber and focal adhesion complex formation. In leukocytes, Rac1 and Rac2 have distinct roles in regulating cell morphology, migration, and invasion, but are not essential for macrophage migration or chemotaxis. Rac3 has biochemical properties that are closely related to Rac1, such as effector interaction, nucleotide binding, and hydrolysis; Rac2 has a slower nucleoti
Probab=99.32 E-value=7.3e-12 Score=102.12 Aligned_cols=132 Identities=23% Similarity=0.275 Sum_probs=91.8
Q ss_pred CCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCCEEECCCCCCCCCE--EEEEEECCHHCCCCHHHHHHHHHHHHHHHH
Q ss_conf 302431146631888999985520002345468721100012456835--899950810002410356666788899850
Q gi|254780809|r 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY--LVKISDTAGIRETDDIVEKEGIKRTFLEVE 297 (440)
Q Consensus 220 ~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTTRD~i~~~~~i~g~--~~~l~DTaGir~t~d~IE~~GI~ra~~~i~ 297 (440)
+||+++|-++||||||+.+++...- ..++.-|--|.....+.++|. .+.+.||||-.+-. ........
T Consensus 2 iKivlvGd~~VGKTsli~r~~~~~f--~~~~~~Ti~~~~~~~i~~~~~~v~l~iwDtaGqe~~~--------~~~~~~~~ 71 (174)
T cd01871 2 IKCVVVGDGAVGKTCLLISYTTNAF--PGEYIPTVFDNYSANVMVDGKPVNLGLWDTAGQEDYD--------RLRPLSYP 71 (174)
T ss_pred EEEEEECCCCCCHHHHHHHHHHCCC--CCCCCCEEEEEEEEEEEECCEEEEEEEECCCCCCCCH--------HHHHHHHH
T ss_conf 6999989999869999999973999--9986883788767999999999999998699972406--------78899874
Q ss_pred HHCCEEECCCCCCHHHHHH------------HCCCCCCCCCCCCCCCCCCCH----------------------H----H
Q ss_conf 3011020135898566343------------128985322223334465420----------------------0----0
Q gi|254780809|r 298 NADLILLLKEINSKKEISF------------PKNIDFIFIGTKSDLYSTYTE----------------------E----Y 339 (440)
Q Consensus 298 ~aDlil~v~D~~~~~~~~~------------~~~~~~i~V~NK~Dl~~~~~~----------------------~----~ 339 (440)
.||.+++|+|.+++..... ..+.|+++|.||+||.+.... . .
T Consensus 72 ~a~~~ilvydi~~~~SF~~i~~~w~~~i~~~~~~~piiLVGnK~DL~~~~~~~~~~~~~~~~~vs~~eg~~~a~~~~~~~ 151 (174)
T cd01871 72 QTDVFLICFSLVSPASFENVRAKWYPEVRHHCPNTPIILVGTKLDLRDDKDTIEKLKEKKLTPITYPQGLAMAKEIGAVK 151 (174)
T ss_pred HCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCE
T ss_conf 06689999867987889999999999999858899979874730131004567788651467758999999998759978
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 0013333232358999999999
Q gi|254780809|r 340 DHLISSFTGEGLEELINKIKSI 361 (440)
Q Consensus 340 ~~~ISaktg~Gi~~L~~~I~~~ 361 (440)
-+.+||++|.|++++-+.+.+.
T Consensus 152 f~EtSAk~~~nV~e~F~~lir~ 173 (174)
T cd01871 152 YLECSALTQKGLKTVFDEAIRA 173 (174)
T ss_pred EEECCCCCCCCHHHHHHHHHHH
T ss_conf 9991878895979999999951
No 162
>cd01889 SelB_euk SelB subfamily. SelB is an elongation factor needed for the co-translational incorporation of selenocysteine. Selenocysteine is coded by a UGA stop codon in combination with a specific downstream mRNA hairpin. In bacteria, the C-terminal part of SelB recognizes this hairpin, while the N-terminal part binds GTP and tRNA in analogy with elongation factor Tu (EF-Tu). It specifically recognizes the selenocysteine charged tRNAsec, which has a UCA anticodon, in an EF-Tu like manner. This allows insertion of selenocysteine at in-frame UGA stop codons. In E. coli SelB binds GTP, selenocysteyl-tRNAsec and a stem-loop structure immediately downstream of the UGA codon (the SECIS sequence). The absence of active SelB prevents the participation of selenocysteyl-tRNAsec in translation. Archaeal and animal mechanisms of selenocysteine incorporation are more complex. Although the SECIS elements have different secondary structures and conserved elements between archaea and euk
Probab=99.32 E-value=6.7e-12 Score=102.38 Aligned_cols=137 Identities=23% Similarity=0.249 Sum_probs=91.9
Q ss_pred CCEEEECCCCCCHHHHHHHHHCCHHCCCCC------CCCCCEEEC--------------CCCCCCCCEEEEEEECCHHCC
Q ss_conf 302431146631888999985520002345------468721100--------------012456835899950810002
Q gi|254780809|r 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTD------IPGTTRDVL--------------TIDLDLEGYLVKISDTAGIRE 279 (440)
Q Consensus 220 ~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~------~~GTTRD~i--------------~~~~~i~g~~~~l~DTaGir~ 279 (440)
+.|+++|...+|||||..+|++.......| .-|.|-|.- .......++.+.|+||||-.+
T Consensus 1 ~NV~iiGHVDhGKTTL~~~L~~~~~~~~~D~~~eE~eRGITi~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~IDtPGH~d 80 (192)
T cd01889 1 VNVGVLGHVDSGKTSLAKALSEIASTAAFDKNPQSQERGITLDLGFSSFYVDKPKHLRELINPGEENLQITLVDCPGHAS 80 (192)
T ss_pred CEEEEEEECCCCHHHHHHHHHHHCCCHHHHCCHHHHHCCCCEEEEEEEEEECCCCCCCCCCCCCCCCEEEEEEECCCCHH
T ss_conf 98999976178999999999833350122135889977971671001378514422112323467745899987798388
Q ss_pred CCHHHHHHHHHHHHHHHHHHCCEEECCCCCCHHH--------HHHHCCCCCCCCCCCCCCCCCCCH--------------
Q ss_conf 4103566667888998503011020135898566--------343128985322223334465420--------------
Q gi|254780809|r 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSKKE--------ISFPKNIDFIFIGTKSDLYSTYTE-------------- 337 (440)
Q Consensus 280 t~d~IE~~GI~ra~~~i~~aDlil~v~D~~~~~~--------~~~~~~~~~i~V~NK~Dl~~~~~~-------------- 337 (440)
- +......+..+|..++|+|+.+... +....+.|.++++||+|+.+....
T Consensus 81 f--------~~~~~~g~~~~D~ailvVda~~G~~~QT~eh~~~~~~~~~~~iv~iNK~D~v~~~~~~~~~~~i~~~l~~~ 152 (192)
T cd01889 81 L--------IRTIIGGAQIIDLMLLVVDATKGIQTQTAECLVIGEILCKKLIVVLNKIDLIPEEERERKIEKMKKKLQKT 152 (192)
T ss_pred H--------HHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 9--------98888887432652799987888878999999999985899799997412788157799999999999999
Q ss_pred --------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf --------000013333232358999999999632
Q gi|254780809|r 338 --------EYDHLISSFTGEGLEELINKIKSILSN 364 (440)
Q Consensus 338 --------~~~~~ISaktg~Gi~~L~~~I~~~l~~ 364 (440)
...+.+||++|+|+++|.+.|.+.+..
T Consensus 153 l~~~~~~~~~iipiSA~~G~gi~eL~~~i~~lip~ 187 (192)
T cd01889 153 LEKTRFKNSPIIPVSAKPGGGEAELGKDLNNLIVL 187 (192)
T ss_pred HHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHCCC
T ss_conf 86538999849995789884989999888761899
No 163
>cd04126 Rab20 Rab20 subfamily. Rab20 is one of several Rab proteins that appear to be restricted in expression to the apical domain of murine polarized epithelial cells. It is expressed on the apical side of polarized kidney tubule and intestinal epithelial cells, and in non-polarized cells. It also localizes to vesico-tubular structures below the apical brush border of renal proximal tubule cells and in the apical region of duodenal epithelial cells. Rab20 has also been shown to colocalize with vacuolar H+-ATPases (V-ATPases) in mouse kidney cells, suggesting a role in the regulation of V-ATPase traffic in specific portions of the nephron. It was also shown to be one of several proteins whose expression is upregulated in human myelodysplastic syndrome (MDS) patients. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bo
Probab=99.31 E-value=1.3e-11 Score=100.35 Aligned_cols=132 Identities=23% Similarity=0.287 Sum_probs=89.1
Q ss_pred CCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCCE-EECCCCCCCCCEEEEEEECCHHCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 302431146631888999985520002345468721-1000124568358999508100024103566667888998503
Q gi|254780809|r 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR-DVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298 (440)
Q Consensus 220 ~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTTR-D~i~~~~~i~g~~~~l~DTaGir~t~d~IE~~GI~ra~~~i~~ 298 (440)
++|+++|.++||||||+++++..+= .+..-|+- |... -.+..+.+.+.||||--+-. ..+......
T Consensus 1 lKivllGd~~VGKTsl~~rf~~~~F---~~~~~Tig~~~~~--k~~~~~~l~IwDTaGqE~f~--------sl~~~y~r~ 67 (220)
T cd04126 1 LKVVLLGDMNVGKTSLLHRYMERRF---KDTVSTVGGAFYL--KQWGPYNISIWDTAGREQFH--------GLGSMYCRG 67 (220)
T ss_pred CEEEEECCCCCCHHHHHHHHHHCCC---CCCCCCCCEEEEE--EECCEEEEEEEECCCCCCCC--------CCHHHHHCC
T ss_conf 9899999999889999999972989---9988871368999--87647889999479862243--------326888567
Q ss_pred HCCEEECCCCCCHHHHHHH------------CCCCCCCCCCCCCCCCCCC----------------------H-------
Q ss_conf 0110201358985663431------------2898532222333446542----------------------0-------
Q gi|254780809|r 299 ADLILLLKEINSKKEISFP------------KNIDFIFIGTKSDLYSTYT----------------------E------- 337 (440)
Q Consensus 299 aDlil~v~D~~~~~~~~~~------------~~~~~i~V~NK~Dl~~~~~----------------------~------- 337 (440)
|+.+|+|+|.+++..+..+ .+.++++|.||+||.+... .
T Consensus 68 a~~~ilvyDit~~~Sf~~l~~~~~~~~~~~~~~~~~ilVGNK~DL~~~~~~~~~~~~~~~~~~~~~~r~Vs~ee~~~~a~ 147 (220)
T cd04126 68 AAAVILTYDVSNVQSLEELEDRFLGLTDTANEDCLFAVVGNKLDLTEEGALAGQEKDAGDRVSPEDQRQVTLEDAKAFYK 147 (220)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEECHHCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHH
T ss_conf 98899999798989999999999999984799980899988712136434433333332234410035448999999999
Q ss_pred H-----------------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 0-----------------00013333232358999999999632
Q gi|254780809|r 338 E-----------------YDHLISSFTGEGLEELINKIKSILSN 364 (440)
Q Consensus 338 ~-----------------~~~~ISaktg~Gi~~L~~~I~~~l~~ 364 (440)
. .-+.+|||||.|++++.+.|.+.+-.
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~fEtSAKtg~nV~e~F~~i~~~i~~ 191 (220)
T cd04126 148 RINKYKMLDEDLSPAAEKMCFETSAKTGYNVDELFEYLFNLVLP 191 (220)
T ss_pred HHHHHCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHH
T ss_conf 85022022211112457769991478997989999999999999
No 164
>PRK12312 infB translation initiation factor IF-2; Provisional
Probab=99.31 E-value=2.1e-12 Score=105.93 Aligned_cols=134 Identities=22% Similarity=0.328 Sum_probs=93.0
Q ss_pred HHCCCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCC-CCEEECCCCCCCCCEEEEEEECCHHCCCCHHHHHHHHHHHHHH
Q ss_conf 202302431146631888999985520002345468-7211000124568358999508100024103566667888998
Q gi|254780809|r 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPG-TTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295 (440)
Q Consensus 217 ~~g~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~G-TTRD~i~~~~~i~g~~~~l~DTaGir~t~d~IE~~GI~ra~~~ 295 (440)
...+-|.+.|..+.||+||+-+|-+.+. +...+| -|--+=-..+.+++.+++|+||||= + ..--=|+ .=
T Consensus 115 ~R~PvVtimGHVDHGKTsLLD~iR~t~V--~~~EaGGITQhIGA~~v~~~~~~itFiDTPGH-e------AFt~mR~-RG 184 (610)
T PRK12312 115 KRPPIVTIMGHVDHGKTTLLDTIRKTNV--VASEAGGITQHIGAYQVEYQGKKITFIDTPGH-E------AFTEMRA-RG 184 (610)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCC--CCCCCCCCCCEECEEEEEECCCEEEEECCCCH-H------HHHHHHH-CC
T ss_conf 8899899967725772258899854864--13467766440044999867976899728967-9------8999997-07
Q ss_pred HHHHCCEEECCCCCC---HHHHH-----HHCCCCCCCCCCCCCCCCCCCHH-------------------HHHHHHHHHH
Q ss_conf 503011020135898---56634-----31289853222233344654200-------------------0001333323
Q gi|254780809|r 296 VENADLILLLKEINS---KKEIS-----FPKNIDFIFIGTKSDLYSTYTEE-------------------YDHLISSFTG 348 (440)
Q Consensus 296 i~~aDlil~v~D~~~---~~~~~-----~~~~~~~i~V~NK~Dl~~~~~~~-------------------~~~~ISaktg 348 (440)
+.-+|++++|+++.+ ++.++ ...+.|+|+.+||+|+....... ..+.|||+||
T Consensus 185 a~vtDI~iLVVaaddGv~pQTiEaI~~ak~a~vpiiVAiNKiDkp~a~~~~v~~~L~~~g~~~E~~GGdv~~V~iSAktg 264 (610)
T PRK12312 185 AKVTDIVILVVAADDGVKPQTEEAIDHAKAANVPIIVFVNKMDKPNANPDRIKNELSKYDLVPEEWGGDTPFVYGSALKN 264 (610)
T ss_pred CCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHCCCHHHHCCCCEEEEEECCCC
T ss_conf 76545799999757897742699999999759988998504467889878999999870766788579445999036879
Q ss_pred HHHHHHHHHHHH
Q ss_conf 235899999999
Q gi|254780809|r 349 EGLEELINKIKS 360 (440)
Q Consensus 349 ~Gi~~L~~~I~~ 360 (440)
+||++|++.|.-
T Consensus 265 ~GId~LLe~IlL 276 (610)
T PRK12312 265 EGIDELLDSILL 276 (610)
T ss_pred CCHHHHHHHHHH
T ss_conf 899999999999
No 165
>smart00174 RHO Rho (Ras homology) subfamily of Ras-like small GTPases. Members of this subfamily of Ras-like small GTPases include Cdc42 and Rac, as well as Rho isoforms.
Probab=99.30 E-value=1.2e-11 Score=100.50 Aligned_cols=131 Identities=23% Similarity=0.317 Sum_probs=89.7
Q ss_pred EEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCCEEECCCCCCCCCE--EEEEEECCHHCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 2431146631888999985520002345468721100012456835--89995081000241035666678889985030
Q gi|254780809|r 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY--LVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299 (440)
Q Consensus 222 v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTTRD~i~~~~~i~g~--~~~l~DTaGir~t~d~IE~~GI~ra~~~i~~a 299 (440)
|+++|.++||||||+++++...= ..++.-|-.|.-...+.++|. .+.+.||||-.+-.. + .......|
T Consensus 1 ivllGd~~VGKTsli~r~~~~~f--~~~y~~Ti~~~~~~~~~~~~~~~~l~i~DtaG~e~~~~------l--~~~~~~~a 70 (174)
T smart00174 1 LVVVGDGAVGKTCLLISYTTNAF--PEDYVPTVFENYSADVEVDGKPVELGLWDTAGQEDYDR------L--RPLSYPDT 70 (174)
T ss_pred EEEECCCCCCHHHHHHHHHHCCC--CCCCCCCEEEEEEEEEEECCEEEEEEEEECCCCCCCCC------C--CHHHCCCC
T ss_conf 59989789759999999953989--99857850578999999999999999994898703454------5--00110488
Q ss_pred CCEEECCCCCCHHHHHH------------HCCCCCCCCCCCCCCCCCCC--------------H--------H----HHH
Q ss_conf 11020135898566343------------12898532222333446542--------------0--------0----000
Q gi|254780809|r 300 DLILLLKEINSKKEISF------------PKNIDFIFIGTKSDLYSTYT--------------E--------E----YDH 341 (440)
Q Consensus 300 Dlil~v~D~~~~~~~~~------------~~~~~~i~V~NK~Dl~~~~~--------------~--------~----~~~ 341 (440)
|.+++|+|.+++..+.. ..+.|+++|.||+||..... . . .-+
T Consensus 71 ~~~ilvydvt~~~Sf~~~~~~w~~~i~~~~~~~piilVgnK~DL~~~~~~~~~~~~~~~~~Vs~~~~~~~a~~~~~~~y~ 150 (174)
T smart00174 71 DVFLICFSVDSPASFENVKEKWYPEVKHFCPNTPIILVGTKLDLREDKSTLRELSKQKQEPVTYEQGEALAKRIGAVKYL 150 (174)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCEEE
T ss_conf 68999975898789999999899999986889869999875425012333545533146500299999999983997899
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q ss_conf 133332323589999999996
Q gi|254780809|r 342 LISSFTGEGLEELINKIKSIL 362 (440)
Q Consensus 342 ~ISaktg~Gi~~L~~~I~~~l 362 (440)
.+|||+|.|++++.+.+.+.+
T Consensus 151 EtSAk~g~nV~e~F~~l~r~~ 171 (174)
T smart00174 151 ECSALTQEGVREVFEEAIRAA 171 (174)
T ss_pred EECCCCCCCHHHHHHHHHHHH
T ss_conf 964588949899999999997
No 166
>cd04130 Wrch_1 Wrch-1 subfamily. Wrch-1 (Wnt-1 responsive Cdc42 homolog) is a Rho family GTPase that shares significant sequence and functional similarity with Cdc42. Wrch-1 was first identified in mouse mammary epithelial cells, where its transcription is upregulated in Wnt-1 transformation. Wrch-1 contains N- and C-terminal extensions relative to cdc42, suggesting potential differences in cellular localization and function. The Wrch-1 N-terminal extension contains putative SH3 domain-binding motifs and has been shown to bind the SH3 domain-containing protein Grb2, which increases the level of active Wrch-1 in cells. Unlike Cdc42, which localizes to the cytosol and perinuclear membranes, Wrch-1 localizes extensively with the plasma membrane and endosomes. The membrane association, localization, and biological activity of Wrch-1 indicate an atypical model of regulation distinct from other Rho family GTPases. Most Rho proteins contain a lipid modification site at the C-terminus,
Probab=99.29 E-value=1.1e-11 Score=100.80 Aligned_cols=130 Identities=23% Similarity=0.300 Sum_probs=89.4
Q ss_pred CCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCCEEECCCCCCCCCEE--EEEEECCHHCCCCHHHHHHHHHHHHHHHH
Q ss_conf 3024311466318889999855200023454687211000124568358--99950810002410356666788899850
Q gi|254780809|r 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL--VKISDTAGIRETDDIVEKEGIKRTFLEVE 297 (440)
Q Consensus 220 ~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTTRD~i~~~~~i~g~~--~~l~DTaGir~t~d~IE~~GI~ra~~~i~ 297 (440)
+||+++|.++||||||+++++...= ..++.-|.-|.-...+.++|.+ +.+.||||-.+-.. .......
T Consensus 1 iKvvlvGd~~VGKTsli~r~~~~~F--~~~y~pT~~~~~~~~i~~~~~~v~l~iwDtaG~e~~~~--------l~~~~~~ 70 (173)
T cd04130 1 LKCVLVGDGAVGKTSLIVSYTTNGY--PTEYVPTAFDNFSVVVLVDGKPVRLQLCDTAGQDEFDK--------LRPLCYP 70 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHHCCC--CCCCCCCEEEEEEEEEEECCEEEEEEEEECCCCCCCCH--------HHHHHHC
T ss_conf 9899999899788999999961999--99857835899999999999999999998998734434--------5676613
Q ss_pred HHCCEEECCCCCCHHHHHH------------HCCCCCCCCCCCCCCCCCCC--------------H--------H----H
Q ss_conf 3011020135898566343------------12898532222333446542--------------0--------0----0
Q gi|254780809|r 298 NADLILLLKEINSKKEISF------------PKNIDFIFIGTKSDLYSTYT--------------E--------E----Y 339 (440)
Q Consensus 298 ~aDlil~v~D~~~~~~~~~------------~~~~~~i~V~NK~Dl~~~~~--------------~--------~----~ 339 (440)
.||.+++|+|.+++..+.. ..+.|+++|.||+||..... . . .
T Consensus 71 ~a~~~ilvydv~~~~Sf~~l~~~w~~~i~~~~~~~piilvGnK~DL~~~~~~~~~~~~~~~r~Vs~~e~~~~a~~~~~~~ 150 (173)
T cd04130 71 DTDVFLLCFSVVNPSSFQNISEKWIPEIRKHNPKAPIILVGTQADLRTDVNVLIQLARYGEKPVSQSRAKALAEKIGACE 150 (173)
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCE
T ss_conf 78789999965987889999999999999609899889998870110013355444332575578999999999849968
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q ss_conf 00133332323589999999
Q gi|254780809|r 340 DHLISSFTGEGLEELINKIK 359 (440)
Q Consensus 340 ~~~ISaktg~Gi~~L~~~I~ 359 (440)
-+.+|||+|.|++++-+.+.
T Consensus 151 y~EtSAkt~~nV~e~Fe~~i 170 (173)
T cd04130 151 YIECSALTQKNLKEVFDTAI 170 (173)
T ss_pred EEEECCCCCCCHHHHHHHHH
T ss_conf 99968688969799999998
No 167
>cd01874 Cdc42 Cdc42 subfamily. Cdc42 is an essential GTPase that belongs to the Rho family of Ras-like GTPases. These proteins act as molecular switches by responding to exogenous and/or endogenous signals and relaying those signals to activate downstream components of a biological pathway. Cdc42 transduces signals to the actin cytoskeleton to initiate and maintain polarized growth and to mitogen-activated protein morphogenesis. In the budding yeast Saccharomyces cerevisiae, Cdc42 plays an important role in multiple actin-dependent morphogenetic events such as bud emergence, mating-projection formation, and pseudohyphal growth. In mammalian cells, Cdc42 regulates a variety of actin-dependent events and induces the JNK/SAPK protein kinase cascade, which leads to the activation of transcription factors within the nucleus. Cdc42 mediates these processes through interactions with a myriad of downstream effectors, whose number and regulation we are just starting to understand. In addi
Probab=99.28 E-value=2.7e-11 Score=98.11 Aligned_cols=132 Identities=21% Similarity=0.284 Sum_probs=89.6
Q ss_pred CCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCCEEECCCCCCCCCE--EEEEEECCHHCCCCHHHHHHHHHHHHHHHH
Q ss_conf 302431146631888999985520002345468721100012456835--899950810002410356666788899850
Q gi|254780809|r 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY--LVKISDTAGIRETDDIVEKEGIKRTFLEVE 297 (440)
Q Consensus 220 ~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTTRD~i~~~~~i~g~--~~~l~DTaGir~t~d~IE~~GI~ra~~~i~ 297 (440)
+||+++|.++||||||+++++...= ..++.-|.-|.-...+.++|. .+.+.||||--+-. ........
T Consensus 2 vKvv~lGd~~VGKTsli~r~~~~~f--~~~y~pti~~~~~~~~~~~~~~v~l~iwDTaG~e~~~--------~l~~~~~~ 71 (175)
T cd01874 2 IKCVVVGDGAVGKTCLLISYTTNKF--PSEYVPTVFDNYAVTVMIGGEPYTLGLFDTAGQEDYD--------RLRPLSYP 71 (175)
T ss_pred EEEEEECCCCCCHHHHHHHHHHCCC--CCCCCCCEEEEEEEEEEECCEEEEEEEEECCCCCCCH--------HHHHHHHH
T ss_conf 7999989999588999999964989--9986786347899999999999999999899974512--------46588771
Q ss_pred HHCCEEECCCCCCHHHHHH------------HCCCCCCCCCCCCCCCCCCC---------------HH-----------H
Q ss_conf 3011020135898566343------------12898532222333446542---------------00-----------0
Q gi|254780809|r 298 NADLILLLKEINSKKEISF------------PKNIDFIFIGTKSDLYSTYT---------------EE-----------Y 339 (440)
Q Consensus 298 ~aDlil~v~D~~~~~~~~~------------~~~~~~i~V~NK~Dl~~~~~---------------~~-----------~ 339 (440)
.+|.+++|+|.+++..+.. ..+.|+++|.||+||.+... .. .
T Consensus 72 ~~~~~ilvydv~d~~Sf~~i~~~w~~~i~~~~~~~p~iLVGnK~DL~~~~~~~~~~~~~~~r~V~~~eg~~lA~~~~~~~ 151 (175)
T cd01874 72 QTDVFLVCFSVVSPSSFENVKEKWVPEITHHCPKTPFLLVGTQIDLRDDPSTIEKLAKNKQKPITPETGEKLARDLKAVK 151 (175)
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCE
T ss_conf 38888999637987889999999999999829899889999872033566667776440265668999999999759959
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 0013333232358999999999
Q gi|254780809|r 340 DHLISSFTGEGLEELINKIKSI 361 (440)
Q Consensus 340 ~~~ISaktg~Gi~~L~~~I~~~ 361 (440)
-+.+|||+|+|++++-+.+...
T Consensus 152 y~EtSAk~g~nV~e~F~~~i~~ 173 (175)
T cd01874 152 YVECSALTQKGLKNVFDEAILA 173 (175)
T ss_pred EEECCCCCCCCHHHHHHHHHHH
T ss_conf 9991337895979999999998
No 168
>cd01891 TypA_BipA TypA (tyrosine phosphorylated protein A)/BipA subfamily. BipA is a protein belonging to the ribosome-binding family of GTPases and is widely distributed in bacteria and plants. BipA was originally described as a protein that is induced in Salmonella typhimurium after exposure to bactericidal/permeability-inducing protein (a cationic antimicrobial protein produced by neutrophils), and has since been identified in E. coli as well. The properties thus far described for BipA are related to its role in the process of pathogenesis by enteropathogenic E. coli. It appears to be involved in the regulation of several processes important for infection, including rearrangements of the cytoskeleton of the host, bacterial resistance to host defense peptides, flagellum-mediated cell motility, and expression of K5 capsular genes. It has been proposed that BipA may utilize a novel mechanism to regulate the expression of target genes. In addition, BipA from enteropathogenic E. co
Probab=99.28 E-value=1.4e-11 Score=100.10 Aligned_cols=135 Identities=23% Similarity=0.211 Sum_probs=90.4
Q ss_pred CEEEECCCCCCHHHHHHHHHCCHHCCC---------CC------CCCCCEEECCCCCCCCCEEEEEEECCHHCCCCHHHH
Q ss_conf 024311466318889999855200023---------45------468721100012456835899950810002410356
Q gi|254780809|r 221 KIVILGHSNAGKSSLFNALAKKDVAIV---------TD------IPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVE 285 (440)
Q Consensus 221 ~v~i~G~pN~GKSSL~N~L~~~~~aIV---------s~------~~GTTRD~i~~~~~i~g~~~~l~DTaGir~t~d~IE 285 (440)
.|+++|...+|||||+.+|+..-..+- +| .-|.|-+.-...+.+++..+.++||||-.+-...
T Consensus 4 Nv~iiGHvd~GKTTL~~~Ll~~tg~~~~~~~~~~~~~D~~~~E~ergiTI~~~~~~~~~~~~~~n~IDtPGH~dF~~~-- 81 (194)
T cd01891 4 NIAIIAHVDHGKTTLVDALLKQSGTFRENEEVEERVMDSNDLERERGITILAKNTAVTYKDTKINIVDTPGHADFGGE-- 81 (194)
T ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCEEEECCCHHHHHCCCCEEEEEEEEEECCEEEEEEECCCCHHHHHH--
T ss_conf 899990689879999999999748763046521686147588887287633458999989988999989984777778--
Q ss_pred HHHHHHHHHHHHHHCCEEECCCCCCHHH--------HHHHCCCCCCCCCCCCCCCCCCCH--------------------
Q ss_conf 6667888998503011020135898566--------343128985322223334465420--------------------
Q gi|254780809|r 286 KEGIKRTFLEVENADLILLLKEINSKKE--------ISFPKNIDFIFIGTKSDLYSTYTE-------------------- 337 (440)
Q Consensus 286 ~~GI~ra~~~i~~aDlil~v~D~~~~~~--------~~~~~~~~~i~V~NK~Dl~~~~~~-------------------- 337 (440)
....+.-+|..++|+|+.+... .....+.|.++++||+|+......
T Consensus 82 ------~~~~~~~~D~ailVVdA~~Gv~~QT~~~l~~a~~~~~~~iv~iNK~D~~~a~~~~v~~ei~~~~~~~~~~~~~~ 155 (194)
T cd01891 82 ------VERVLSMVDGVLLLVDASEGPMPQTRFVLKKALELGLKPIVVINKIDRPDARPEEVVDEVFDLFIELGATEEQL 155 (194)
T ss_pred ------HHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHCCCCCCCC
T ss_conf ------98776434467898653789758999999999872997499885645898889999999999998639993335
Q ss_pred -HHHHHHHHHHH----------HHHHHHHHHHHHHHH
Q ss_conf -00001333323----------235899999999963
Q gi|254780809|r 338 -EYDHLISSFTG----------EGLEELINKIKSILS 363 (440)
Q Consensus 338 -~~~~~ISaktg----------~Gi~~L~~~I~~~l~ 363 (440)
-+.+.+||++| ++++.|+++|.+.++
T Consensus 156 ~~pii~~SA~~G~~~d~~~~~~~~~~~ll~ai~~~iP 192 (194)
T cd01891 156 DFPVLYASAKNGWASLNLEDPSEDLEPLFDTIIEHVP 192 (194)
T ss_pred CCCEEEEECCCCCCCCCCCCCCCCHHHHHHHHHHHCC
T ss_conf 8857872565533577886564659999999996588
No 169
>cd04129 Rho2 Rho2 subfamily. Rho2 is a fungal GTPase that plays a role in cell morphogenesis, control of cell wall integrity, control of growth polarity, and maintenance of growth direction. Rho2 activates the protein kinase C homolog Pck2, and Pck2 controls Mok1, the major (1-3) alpha-D-glucan synthase. Together with Rho1 (RhoA), Rho2 regulates the construction of the cell wall. Unlike Rho1, Rho2 is not an essential protein, but its overexpression is lethal. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for proper intracellular localization via membrane attachment. As with other Rho family GTPases, the GDP/GTP cycling is regulated by GEFs (guanine nucleotide exchange factors), GAPs (GTPase-activating proteins) and GDIs (guanine nucleotide dissociation inhibitors).
Probab=99.26 E-value=1.8e-11 Score=99.30 Aligned_cols=135 Identities=24% Similarity=0.333 Sum_probs=91.2
Q ss_pred CCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCCEEECCCCCCCCCEE--EEEEECCHHCCCCHHHHHHHHHHHHHHHH
Q ss_conf 3024311466318889999855200023454687211000124568358--99950810002410356666788899850
Q gi|254780809|r 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL--VKISDTAGIRETDDIVEKEGIKRTFLEVE 297 (440)
Q Consensus 220 ~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTTRD~i~~~~~i~g~~--~~l~DTaGir~t~d~IE~~GI~ra~~~i~ 297 (440)
.||+++|.++||||||++++....- ..++.-|.-|.-...+.++|.+ +.+.||||--+-.. + ......
T Consensus 2 ~KivllGd~~VGKTsLi~r~~~~~f--~~~y~pTi~~~~~~~i~v~~~~v~l~iwDTaG~e~~~~------~--~~~~~~ 71 (187)
T cd04129 2 RKLVIVGDGACGKTSLLSVFTLGEF--PEEYHPTVFENYVTDCRVDGKPVQLALWDTAGQEEYER------L--RPLSYS 71 (187)
T ss_pred EEEEEECCCCCCHHHHHHHHHHCCC--CCCCCCCEEEEEEEEEEECCEEEEEEEEECCCCCCCCC------C--CCCEEC
T ss_conf 1999999899768999999982989--99878866789899999999999999997888703454------6--041233
Q ss_pred HHCCEEECCCCCCHHHHHH------------HCCCCCCCCCCCCCCCCCCC-------------H-------H----HHH
Q ss_conf 3011020135898566343------------12898532222333446542-------------0-------0----000
Q gi|254780809|r 298 NADLILLLKEINSKKEISF------------PKNIDFIFIGTKSDLYSTYT-------------E-------E----YDH 341 (440)
Q Consensus 298 ~aDlil~v~D~~~~~~~~~------------~~~~~~i~V~NK~Dl~~~~~-------------~-------~----~~~ 341 (440)
.||.+++|+|.+++..+.. ..+.|+++|.||+||..... . . .-+
T Consensus 72 ~a~~~ilvydi~~~~Sf~~~~~~w~~~~~~~~~~~piilVGnK~DL~~~~~~~~~~~~~r~V~~~~g~~~a~~~~~~~y~ 151 (187)
T cd04129 72 KAHVILIGFAVDTPDSLENVRTKWIEEVRRYCPNVPVILVGLKKDLRQDAVAKEEYRTQRFVPIQQGKRVAKEIGAKKYM 151 (187)
T ss_pred CCCEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCCCCHHHCCCCCHHHHHHHHHHCCCCEEE
T ss_conf 88589997026986679999999999999858799889998860011341121112231557899999999984997899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 13333232358999999999632
Q gi|254780809|r 342 LISSFTGEGLEELINKIKSILSN 364 (440)
Q Consensus 342 ~ISaktg~Gi~~L~~~I~~~l~~ 364 (440)
.+||++|+|++++.+.+.+.+-.
T Consensus 152 EtSAk~~~nV~e~F~~~~r~~l~ 174 (187)
T cd04129 152 ECSALTGEGVDDVFEAATRAALL 174 (187)
T ss_pred EECCCCCCCHHHHHHHHHHHHHH
T ss_conf 96889997989999999999975
No 170
>cd04162 Arl9_Arfrp2_like Arl9/Arfrp2-like subfamily. Arl9 (Arf-like 9) was first identified as part of the Human Cancer Genome Project. It maps to chromosome 4q12 and is sometimes referred to as Arfrp2 (Arf-related protein 2). This is a novel subfamily identified in human cancers that is uncharacterized to date.
Probab=99.26 E-value=3.1e-11 Score=97.79 Aligned_cols=133 Identities=17% Similarity=0.318 Sum_probs=93.6
Q ss_pred CEEEECCCCCCHHHHHHHHHCCHH-CCCCCCCCCCEEECCCCCCCCCEEEEEEECCHHCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 024311466318889999855200-0234546872110001245683589995081000241035666678889985030
Q gi|254780809|r 221 KIVILGHSNAGKSSLFNALAKKDV-AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299 (440)
Q Consensus 221 ~v~i~G~pN~GKSSL~N~L~~~~~-aIVs~~~GTTRD~i~~~~~i~g~~~~l~DTaGir~t~d~IE~~GI~ra~~~i~~a 299 (440)
||+++|..|||||||++.|.+.+. .-+.+..| .-...+.++++.+.+.|++|-..-. ..-.....++
T Consensus 1 kIlilGLd~aGKTTil~~l~~~~~~~~~~PT~G----f~~~~i~~~~~~l~~wDlgGq~~~R--------~~W~~Y~~~~ 68 (164)
T cd04162 1 QILVLGLDGAGKTSLLHSLSSERSLESVVPTTG----FNSVAIPTQDAIMELLEIGGSQNLR--------KYWKRYLSGS 68 (164)
T ss_pred CEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCC----CCEEEEEECCEEEEEEECCCHHHHH--------HHHHHHHHCC
T ss_conf 999996799989999999816998765356327----7469999899999998537528886--------5699871177
Q ss_pred CCEEECCCCCCHHHH-----------HHHCCCCCCCCCCCCCCCCCCCHH----------------HHHHHHHHHHHHHH
Q ss_conf 110201358985663-----------431289853222233344654200----------------00013333232358
Q gi|254780809|r 300 DLILLLKEINSKKEI-----------SFPKNIDFIFIGTKSDLYSTYTEE----------------YDHLISSFTGEGLE 352 (440)
Q Consensus 300 Dlil~v~D~~~~~~~-----------~~~~~~~~i~V~NK~Dl~~~~~~~----------------~~~~ISaktg~Gi~ 352 (440)
|.++||+|+++...+ ....+.|++++.||.|+....... ..+.-++.+|+|++
T Consensus 69 ~gIIfVVDssD~~rl~eak~~L~~ll~~~~~~PlLIlaNKqDl~~a~s~~ei~~~L~L~~i~~~r~w~iq~~s~~g~gl~ 148 (164)
T cd04162 69 QGLIFVVDSADSERLPLARQELHQLLQHPPDLPLVVLANKQDLPAARSVQEIHKELELEPIARGRRWILQGTSLDDDGSP 148 (164)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCCCCCHHHHHHHCCCCCCCCCCCEEEEEECCCCCCCH
T ss_conf 58999995688889999999999997087998699998632433699999999866994637999889971104799858
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 9999999996322
Q gi|254780809|r 353 ELINKIKSILSNK 365 (440)
Q Consensus 353 ~L~~~I~~~l~~~ 365 (440)
+-.+.+...+...
T Consensus 149 ~~~~~l~~~~~~~ 161 (164)
T cd04162 149 SRMEAVKDLLSQL 161 (164)
T ss_pred HHHHHHHHHHHHH
T ss_conf 9999999999998
No 171
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=99.25 E-value=6e-12 Score=102.70 Aligned_cols=61 Identities=43% Similarity=0.614 Sum_probs=48.5
Q ss_pred HHCCCEEEECCCCCCHHHHHHHHHCC-----HHCCCCCCCCCCEEECCCCCCCCCEEEEEEECCHHCCC
Q ss_conf 20230243114663188899998552-----00023454687211000124568358999508100024
Q gi|254780809|r 217 RNGYKIVILGHSNAGKSSLFNALAKK-----DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 (440)
Q Consensus 217 ~~g~~v~i~G~pN~GKSSL~N~L~~~-----~~aIVs~~~GTTRD~i~~~~~i~g~~~~l~DTaGir~t 280 (440)
++|-.|-++|.+|||||||+|+|++. ++.-||.+||||+|.++-.+. + ...++||||+-..
T Consensus 152 ~~~~dvyvvG~tNvGKSTliN~Ll~~~~~~~~~~T~S~~PGTTL~~i~i~l~--~-~~~i~DTPGi~~~ 217 (360)
T TIGR03597 152 RNKKDVYVVGVTNVGKSSLINKLLKQNNGDKDVITTSPFPGTTLDLIEIPLD--D-GHSLYDTPGIINS 217 (360)
T ss_pred HCCCCEEEECCCCCCHHHHHHHHHHHCCCCCCCEEECCCCCCCCCCEEEECC--C-CCEEECCCCCCCH
T ss_conf 1699589991686658999999987616777723645899853330787538--9-9557457765574
No 172
>TIGR00436 era GTP-binding protein Era; InterPro: IPR005662 Era is an essential G-protein in Escherichia coli identified originally as a homologue protein to Ras (E. coli Ras-like protein). It binds to GTP/GDP and contains a low intrinsic GTPase activity. Its function remains elusive, although it may be associated with cell division, energy metabolism, and cell-cycle check point. The protein has recently been shown to specifically bind to 16S rRNA and the 30S ribosomal subunit . Involvement of Era in protein synthesis is suggested by the fact that Era depletion results in the translation defect both in vitro and in vivo. A Type 2 KH domain is found near the C-terminus. ; GO: 0003723 RNA binding, 0005525 GTP binding, 0005622 intracellular.
Probab=99.24 E-value=3.1e-11 Score=97.72 Aligned_cols=155 Identities=22% Similarity=0.188 Sum_probs=122.1
Q ss_pred CEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCCEEECCCCCCCCCEE-EEEEECCHHCCC-CHHHHHHHHHHHHHHHHH
Q ss_conf 024311466318889999855200023454687211000124568358-999508100024-103566667888998503
Q gi|254780809|r 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL-VKISDTAGIRET-DDIVEKEGIKRTFLEVEN 298 (440)
Q Consensus 221 ~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTTRD~i~~~~~i~g~~-~~l~DTaGir~t-~d~IE~~GI~ra~~~i~~ 298 (440)
.++++|+||+|||+++|.++|.+.+++++.|.|||..+.....-+... +.++||||++.. .......-.+.+...+..
T Consensus 2 ~~~~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~pg~~~~~~~~~~~~~~~~~~~~~~~ 81 (278)
T TIGR00436 2 FVAILGRPNVGKSTLLNKLLGQKISITSPKPQTTRNRISGILTTGASQNIIFIDTPGFHEPEKHKLGELLNKEARSALGG 81 (278)
T ss_pred CEEECCCCCCCHHHHHHHHHCCCHHCCCCCCHHHHHHHHEEEECCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHHCC
T ss_conf 11211577653366777663241010023101234332001223665515786258765124567788888888753123
Q ss_pred HCCEEECCCCCCHHHH------H--HHCCCCCCCCCCCCCCCCCCC----------------HHHHHHHHHHHHHHHHHH
Q ss_conf 0110201358985663------4--312898532222333446542----------------000001333323235899
Q gi|254780809|r 299 ADLILLLKEINSKKEI------S--FPKNIDFIFIGTKSDLYSTYT----------------EEYDHLISSFTGEGLEEL 354 (440)
Q Consensus 299 aDlil~v~D~~~~~~~------~--~~~~~~~i~V~NK~Dl~~~~~----------------~~~~~~ISaktg~Gi~~L 354 (440)
.|+++++++....... . .....+..+..||.|...... ....+.+|+.++.+...+
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (278)
T TIGR00436 82 VDLLLFVVDSDEWNGDGDEFLLEKLQNLKRPVLLTLNKLDNKNFPDKLLPLLDKYAGLEDFKPWPIVPISALKGDNTEEL 161 (278)
T ss_pred CEEEEEEEECCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCEEEHHHHHHCHHHHH
T ss_conf 22688986334455640468898765202101001223331010356777776665542046752011011210005778
Q ss_pred HHHHHHHHHHHCCCCCCCEEH
Q ss_conf 999999963220358863201
Q gi|254780809|r 355 INKIKSILSNKFKKLPFSIPS 375 (440)
Q Consensus 355 ~~~I~~~l~~~~~~~~~~i~~ 375 (440)
...+...+.......+..+.+
T Consensus 162 ~~~~~~~~~~~~~~~~~~~~~ 182 (278)
T TIGR00436 162 KAFLEAKLPEGPFYYPEDYVT 182 (278)
T ss_pred HHHHHHHCCCCCCCCCHHHHC
T ss_conf 888775303343226502203
No 173
>cd04131 Rnd Rnd subfamily. The Rnd subfamily contains Rnd1/Rho6, Rnd2/Rho7, and Rnd3/RhoE/Rho8. These novel Rho family proteins have substantial structural differences compared to other Rho members, including N- and C-terminal extensions relative to other Rhos. Rnd3/RhoE is farnesylated at the C-terminal prenylation site, unlike most other Rho proteins that are geranylgeranylated. In addition, Rnd members are unable to hydrolyze GTP and are resistant to GAP activity. They are believed to exist only in the GTP-bound conformation, and are antagonists of RhoA activity. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.23 E-value=7.2e-11 Score=95.19 Aligned_cols=133 Identities=22% Similarity=0.312 Sum_probs=90.4
Q ss_pred CCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCCEEECCCCCCCCCE--EEEEEECCHHCCCCHHHHHHHHHHHHHHHH
Q ss_conf 302431146631888999985520002345468721100012456835--899950810002410356666788899850
Q gi|254780809|r 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY--LVKISDTAGIRETDDIVEKEGIKRTFLEVE 297 (440)
Q Consensus 220 ~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTTRD~i~~~~~i~g~--~~~l~DTaGir~t~d~IE~~GI~ra~~~i~ 297 (440)
+||+++|.++||||||++++++..= -.++.-|.-|.-...+.++|. .+.|.||||--+-. ........
T Consensus 2 ~KivlvGd~~VGKTsLi~r~~~~~F--~~~y~pTi~~~~~~~~~v~~~~v~l~iwDTaGqe~~~--------~l~~~~y~ 71 (178)
T cd04131 2 CKIVVVGDVQCGKTALLQVFAKDCY--PETYVPTVFENYTASFEIDEQRIELSLWDTSGSPYYD--------NVRPLCYP 71 (178)
T ss_pred EEEEEECCCCCCHHHHHHHHHCCCC--CCCCCCCEEEEEEEEEEECCEEEEEEEEECCCCHHHC--------CHHHHHHC
T ss_conf 0999999999778999999963999--9985785688889999999999999999689874211--------03667734
Q ss_pred HHCCEEECCCCCCHHHHHH------------HCCCCCCCCCCCCCCCCCCC---------------H-------H--HH-
Q ss_conf 3011020135898566343------------12898532222333446542---------------0-------0--00-
Q gi|254780809|r 298 NADLILLLKEINSKKEISF------------PKNIDFIFIGTKSDLYSTYT---------------E-------E--YD- 340 (440)
Q Consensus 298 ~aDlil~v~D~~~~~~~~~------------~~~~~~i~V~NK~Dl~~~~~---------------~-------~--~~- 340 (440)
.||.+++|+|.+++..+.. ..+.|+++|.||+||..... + . ..
T Consensus 72 ~a~~~ilvydit~~~Sf~~v~~~W~~ei~~~~~~~~iiLVGnK~DLr~~~~~~~~~~~~~~~~Vs~eeg~~~A~~~ga~~ 151 (178)
T cd04131 72 DSDAVLICFDISRPETLDSVLKKWRGEIQEFCPNTKVLLVGCKTDLRTDLSTLMELSHQRQAPVSYEQGCAIAKQLGAEI 151 (178)
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCE
T ss_conf 68789999737987889999999999999868799889999854366444556677644677768999999999749989
Q ss_pred -HHHHHHHHH-HHHHHHHHHHHHH
Q ss_conf -013333232-3589999999996
Q gi|254780809|r 341 -HLISSFTGE-GLEELINKIKSIL 362 (440)
Q Consensus 341 -~~ISaktg~-Gi~~L~~~I~~~l 362 (440)
+..||+||+ |++++-+.+.+..
T Consensus 152 y~EtSAktg~ngV~evF~~a~~~~ 175 (178)
T cd04131 152 YLECSAFTSEKSVRDIFHVATMAC 175 (178)
T ss_pred EEECCCCCCCCCHHHHHHHHHHHH
T ss_conf 999784868739899999999998
No 174
>cd01899 Ygr210 Ygr210 subfamily. Ygr210 is a member of Obg-like family and present in archaea and fungi. They are characterized by a distinct glycine-rich motif immediately following the Walker B motif. The Ygr210 and YyaF/YchF subfamilies appear to form one major branch of the Obg-like family. Among eukaryotes, the Ygr210 subfamily is represented only in fungi. These fungal proteins form a tight cluster with their archaeal orthologs, which suggests the possibility of horizontal transfer from archaea to fungi.
Probab=99.23 E-value=1.5e-11 Score=99.98 Aligned_cols=86 Identities=29% Similarity=0.393 Sum_probs=64.8
Q ss_pred EEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCCEEECCCC-----------CC----------CCC---EEEEEEECCHH
Q ss_conf 2431146631888999985520002345468721100012-----------45----------683---58999508100
Q gi|254780809|r 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTID-----------LD----------LEG---YLVKISDTAGI 277 (440)
Q Consensus 222 v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTTRD~i~~~-----------~~----------i~g---~~~~l~DTaGi 277 (440)
|.|+|.||||||||||+|+..+. =+.++|.||-|.-.+. +. .++ +|+.|+|-||+
T Consensus 1 iGiVGlPNvGKSTlFnAlT~~~~-~~anyPF~TIePN~Gv~~v~v~~p~~~l~~~~~~~~~~~~~~~r~vPve~vDIAGL 79 (318)
T cd01899 1 IGLVGKPNAGKSTFFNAATLADV-EIANYPFTTIDPNVGVGYVRVECPCKELGVSCNPRYGKCIDGKRYVPVELIDVAGL 79 (318)
T ss_pred CCEECCCCCCHHHHHHHHHCCCC-CCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCEECCEEEEECHHH
T ss_conf 93448898988999999977998-51279966767741620055688416664330433120147740033267521001
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHCCEEECCCCC
Q ss_conf 02410356666788899850301102013589
Q gi|254780809|r 278 RETDDIVEKEGIKRTFLEVENADLILLLKEIN 309 (440)
Q Consensus 278 r~t~d~IE~~GI~ra~~~i~~aDlil~v~D~~ 309 (440)
=.-..+=|..| .+-+..+.++|.+++|+|++
T Consensus 80 V~GAskG~GLG-NkFL~~iRe~DaiihVVd~s 110 (318)
T cd01899 80 VPGAHEGKGLG-NKFLDDLRDADALIHVVDAS 110 (318)
T ss_pred HCCCCCCCCCH-HHHHHHHHHCCEEEEEEECC
T ss_conf 05664577665-99999998478899985047
No 175
>cd04161 Arl2l1_Arl13_like Arl2l1/Arl13 subfamily. Arl2l1 (Arl2-like protein 1) and Arl13 form a subfamily of the Arf family of small GTPases. Arl2l1 was identified in human cells during a search for the gene(s) responsible for Bardet-Biedl syndrome (BBS). Like Arl6, the identified BBS gene, Arl2l1 is proposed to have cilia-specific functions. Arl13 is found on the X chromosome, but its expression has not been confirmed; it may be a pseudogene.
Probab=99.22 E-value=3.8e-11 Score=97.13 Aligned_cols=123 Identities=20% Similarity=0.219 Sum_probs=87.8
Q ss_pred CEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCCEEECCCCCCCCCEEEEEEECCHHCCCCHHHHHHHHHH-HHHHHHHH
Q ss_conf 02431146631888999985520002345468721100012456835899950810002410356666788-89985030
Q gi|254780809|r 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKR-TFLEVENA 299 (440)
Q Consensus 221 ~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTTRD~i~~~~~i~g~~~~l~DTaGir~t~d~IE~~GI~r-a~~~i~~a 299 (440)
+|+++|.+|||||||+++|.+....=+.+..| +....+.++++.+.+.|..|-.. ++. -......+
T Consensus 1 sililGLd~aGKTTil~~l~~~~~~~~~PT~G----~~~~~~~~~~~~l~~~DlgG~~~---------~R~lW~~Y~~~~ 67 (167)
T cd04161 1 TLLTVGLDNAGKTTLVSALQGEIPKKVAPTVG----FTPTKLRLDKYEVCIFDLGGGAN---------FRGIWVNYYAEA 67 (167)
T ss_pred CEEEEEECCCCHHHHHHHHCCCCCCCCCCCCC----CCEEEEEECCEEEEEEECCCCHH---------HHHHHHHHCCCC
T ss_conf 98999008998899999982899876508777----31799998999999998998778---------889999873477
Q ss_pred CCEEECCCCCCHHHHH-------------HHCCCCCCCCCCCCCCCCCCCHH-------------------HHHHHHHHH
Q ss_conf 1102013589856634-------------31289853222233344654200-------------------000133332
Q gi|254780809|r 300 DLILLLKEINSKKEIS-------------FPKNIDFIFIGTKSDLYSTYTEE-------------------YDHLISSFT 347 (440)
Q Consensus 300 Dlil~v~D~~~~~~~~-------------~~~~~~~i~V~NK~Dl~~~~~~~-------------------~~~~ISakt 347 (440)
|.++||+|.++...+. ..+++|++++.||.|+....... .....||++
T Consensus 68 ~gIIfVVDssD~~rl~eak~~L~~lL~~~~l~~~PiLIlaNKqDl~~a~~~~ei~~~L~L~~l~~~~~~~~~I~~csA~t 147 (167)
T cd04161 68 HGLVFVVDSSDDDRVQEVKEILRELLQHPRVSGKPILVLANKQDKKNALLGADVIEYLSLEKLVNENKSLCHIEPCSAIE 147 (167)
T ss_pred CEEEEEEECCCHHHHHHHHHHHHHHHCCHHHCCCEEEEEEECCCCCCCCCHHHHHHHHCCHHHCCCCCCEEEEEECEEEC
T ss_conf 65799985575889999999999996588778995999988657615899999998819742408998637999576444
Q ss_pred HHH------HHHHHH
Q ss_conf 323------589999
Q gi|254780809|r 348 GEG------LEELIN 356 (440)
Q Consensus 348 g~G------i~~L~~ 356 (440)
|+| +.+=++
T Consensus 148 G~G~~~~~~l~eGl~ 162 (167)
T cd04161 148 GLGKKIDPSIVEGLR 162 (167)
T ss_pred CCCCCCCCCHHHHHH
T ss_conf 888787663154998
No 176
>cd04103 Centaurin_gamma Centaurin gamma. The centaurins (alpha, beta, gamma, and delta) are large, multi-domain proteins that all contain an ArfGAP domain and ankyrin repeats, and in some cases, numerous additional domains. Centaurin gamma contains an additional GTPase domain near its N-terminus. The specific function of this GTPase domain has not been well characterized, but centaurin gamma 2 (CENTG2) may play a role in the development of autism. Centaurin gamma 1 is also called PIKE (phosphatidyl inositol (PI) 3-kinase enhancer) and centaurin gamma 2 is also known as AGAP (ArfGAP protein with a GTPase-like domain, ankyrin repeats and a Pleckstrin homology domain) or GGAP. Three isoforms of PIKE have been identified. PIKE-S (short) and PIKE-L (long) are brain-specific isoforms, with PIKE-S restricted to the nucleus and PIKE-L found in multiple cellular compartments. A third isoform, PIKE-A was identified in human glioblastoma brain cancers and has been found in various tissues.
Probab=99.21 E-value=4.7e-11 Score=96.51 Aligned_cols=126 Identities=16% Similarity=0.234 Sum_probs=87.3
Q ss_pred CCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCCEEECCCCCCCCCE--EEEEEECCHHCCCCHHHHHHHHHHHHHHHH
Q ss_conf 302431146631888999985520002345468721100012456835--899950810002410356666788899850
Q gi|254780809|r 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY--LVKISDTAGIRETDDIVEKEGIKRTFLEVE 297 (440)
Q Consensus 220 ~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTTRD~i~~~~~i~g~--~~~l~DTaGir~t~d~IE~~GI~ra~~~i~ 297 (440)
+||+++|.++||||||+++.+...= ..+++ ||-+.-...+.++|. .+.+.||||--+ .+...
T Consensus 1 ~KivllGd~~VGKTsl~~Rf~~~~F--~~~~~-pt~~~~~~~~~vdg~~~~l~i~DTaG~~~-------------~~~~~ 64 (158)
T cd04103 1 LKLGIVGNLQSGKSALVHRYLTGSY--VQLES-PEGGRFKKEVLVDGQSHLLLIRDEGGAPD-------------AQFAS 64 (158)
T ss_pred CEEEEECCCCCCHHHHHHHHHHCCC--CCCCC-CCCCEEEEEEEECCEEEEEEEEECCCCCC-------------HHHHC
T ss_conf 9999999699879999999980947--87444-66441799999999999999995899834-------------33321
Q ss_pred HHCCEEECCCCCCHHHHHH-------------HCCCCCCCCCCCCCCCCCCC----H--------H----HHHHHHHHHH
Q ss_conf 3011020135898566343-------------12898532222333446542----0--------0----0001333323
Q gi|254780809|r 298 NADLILLLKEINSKKEISF-------------PKNIDFIFIGTKSDLYSTYT----E--------E----YDHLISSFTG 348 (440)
Q Consensus 298 ~aDlil~v~D~~~~~~~~~-------------~~~~~~i~V~NK~Dl~~~~~----~--------~----~~~~ISaktg 348 (440)
.||.+++|+|.+++..... .++.|+++|.||.|+..... . . .-+.+||++|
T Consensus 65 ~ada~ilVydit~~~SF~~v~~~~~~i~~~~~~~~ipiilvGnK~dl~~~~~r~V~~~e~~~~a~~~~~~~f~EtSAk~~ 144 (158)
T cd04103 65 WVDAVIFVFSLENEASFQTVYNLYHQLSSYRNISEIPLILVGTQDAISESNPRVIDDARARQLCADMKRCSYYETCATYG 144 (158)
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCCCCCCEECCHHHHHHHHHHCCCCEEEEEECCCC
T ss_conf 49989999988988899999999999998559789968999877003657761479999999998569988999017999
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 2358999999999
Q gi|254780809|r 349 EGLEELINKIKSI 361 (440)
Q Consensus 349 ~Gi~~L~~~I~~~ 361 (440)
.|++++-+.+.+.
T Consensus 145 ~NV~~~F~~~~~~ 157 (158)
T cd04103 145 LNVERVFQEAAQK 157 (158)
T ss_pred CCHHHHHHHHHHH
T ss_conf 5989999999963
No 177
>PRK05306 infB translation initiation factor IF-2; Validated
Probab=99.21 E-value=5.9e-11 Score=95.83 Aligned_cols=138 Identities=24% Similarity=0.341 Sum_probs=93.6
Q ss_pred HHHHHHCCCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCC-CCEEECCCCCCC-CCEEEEEEECCHHCCCCHHHHHHHHH
Q ss_conf 5543202302431146631888999985520002345468-721100012456-83589995081000241035666678
Q gi|254780809|r 213 GEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPG-TTRDVLTIDLDL-EGYLVKISDTAGIRETDDIVEKEGIK 290 (440)
Q Consensus 213 ~~~l~~g~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~G-TTRD~i~~~~~i-~g~~~~l~DTaGir~t~d~IE~~GI~ 290 (440)
..+....+-|.|.|...-||.|||.+|-+.+.+ ...+| -|--+=-..+.+ +|..++|+||||- |..--=
T Consensus 335 ~~~~~r~pvvt~mghvdhgkt~lld~~r~~~v~--~~e~ggitq~iga~~v~~~~~~~itf~dtpgh-------~af~~m 405 (839)
T PRK05306 335 EDLVPRPPVVTIMGHVDHGKTSLLDAIRKTKVA--AGEAGGITQHIGAYQVETENGKKITFLDTPGH-------EAFTAM 405 (839)
T ss_pred HHCCCCCCEEEEECCCCCCHHHHHHHHHCCCCC--CCCCCCCCCEEEEEEEEECCCCEEEEECCCCH-------HHHHHH
T ss_conf 105668988988577467731489998628753--55678755222349999569987998558855-------889999
Q ss_pred HHHHHHHHHCCEEECCCCCC---HHHHHHH-----CCCCCCCCCCCCCCCCCCCHH-------------------HHHHH
Q ss_conf 88998503011020135898---5663431-----289853222233344654200-------------------00013
Q gi|254780809|r 291 RTFLEVENADLILLLKEINS---KKEISFP-----KNIDFIFIGTKSDLYSTYTEE-------------------YDHLI 343 (440)
Q Consensus 291 ra~~~i~~aDlil~v~D~~~---~~~~~~~-----~~~~~i~V~NK~Dl~~~~~~~-------------------~~~~I 343 (440)
|+ .-++-.|++++|+.+.+ ++.++.+ .+.|+|+.+||+|+.....+. ..+.|
T Consensus 406 r~-rga~~tdi~ilvvaaddgv~pqt~eai~~~~~a~vp~ivaink~d~~~a~~~~v~~~l~~~~~~~e~~gg~~~~v~~ 484 (839)
T PRK05306 406 RA-RGAQVTDIVVLVVAADDGVMPQTIEAINHAKAAGVPIIVAINKIDKPGANPDRVKQELTEYGLVPEEWGGDTIFVPV 484 (839)
T ss_pred HH-CCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHCCCCHHHCCCCEEEEEE
T ss_conf 86-35765436999997777756778999999997499889997404678898899999999849864542894489981
Q ss_pred HHHHHHHHHHHHHHHHH
Q ss_conf 33323235899999999
Q gi|254780809|r 344 SSFTGEGLEELINKIKS 360 (440)
Q Consensus 344 Saktg~Gi~~L~~~I~~ 360 (440)
||++|+|||.|++.|.-
T Consensus 485 sa~~~~~~~~l~e~i~l 501 (839)
T PRK05306 485 SAKTGEGIDELLEAILL 501 (839)
T ss_pred EECCCCCHHHHHHHHHH
T ss_conf 51578878999999998
No 178
>PRK13796 GTP-binding protein YqeH; Provisional
Probab=99.20 E-value=1.4e-11 Score=100.07 Aligned_cols=62 Identities=40% Similarity=0.587 Sum_probs=48.7
Q ss_pred HHHCCCEEEECCCCCCHHHHHHHHHC-----CHHCCCCCCCCCCEEECCCCCCCCCEEEEEEECCHHCCC
Q ss_conf 32023024311466318889999855-----200023454687211000124568358999508100024
Q gi|254780809|r 216 IRNGYKIVILGHSNAGKSSLFNALAK-----KDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 (440)
Q Consensus 216 l~~g~~v~i~G~pN~GKSSL~N~L~~-----~~~aIVs~~~GTTRD~i~~~~~i~g~~~~l~DTaGir~t 280 (440)
++.|-.|-++|.+|||||||||+|+. .++.-||.+||||.|.++-.+. + ...++||||+-..
T Consensus 159 ~~~~~dvyvVG~tNvGKSTLiN~ll~~~~~~~~~iT~S~~PGTTL~~i~ipl~--~-~~~l~DTPGi~~~ 225 (367)
T PRK13796 159 YREGRDVYVVGVTNVGKSTLINRIIKEITGEKDVITTSRFPGTTLDKIEIPLD--D-GSFLYDTPGIIHR 225 (367)
T ss_pred HCCCCCEEEEECCCCCHHHHHHHHHHHHCCCCCCEEECCCCCCCCCCEEEECC--C-CCEEECCCCCCCH
T ss_conf 63798589991575758999999998716787731344899863031787238--9-8567558886674
No 179
>pfam03308 ArgK ArgK protein. The ArgK protein acts as an ATPase enzyme and as a kinase, and phosphorylates periplasmic binding proteins involved in the LAO (lysine, arginine, ornithine)/AO transport systems.
Probab=99.20 E-value=4.5e-11 Score=96.65 Aligned_cols=159 Identities=25% Similarity=0.303 Sum_probs=101.9
Q ss_pred HCCCEEEECCCCCCHHHHHHHHHC------CHHCCC-----CCCCC----------------------------------
Q ss_conf 023024311466318889999855------200023-----45468----------------------------------
Q gi|254780809|r 218 NGYKIVILGHSNAGKSSLFNALAK------KDVAIV-----TDIPG---------------------------------- 252 (440)
Q Consensus 218 ~g~~v~i~G~pN~GKSSL~N~L~~------~~~aIV-----s~~~G---------------------------------- 252 (440)
+.++|.|.|+|-||||||+++|.. .+.|++ |++-|
T Consensus 28 ~a~~iGiTG~PGaGKStli~~l~~~~~~~g~~vaVlAvDPSS~~sgGaiLGDr~RM~~~~~~~~vfiRs~~srg~lGGls 107 (267)
T pfam03308 28 RAHRVGITGVPGAGKSTLIEALGMELRRRGHRVAVLAVDPSSPFTGGSILGDRTRMQRLAVDPGAFIRSSPSRGALGGLS 107 (267)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCHHHHHHHCCCCCEEEEECCCCCCCCCCC
T ss_conf 95599876899887999999999999968986899997899988886300107777650589985886457788888714
Q ss_pred -CCEEECCCCCCCCCEEEEEEECCHHCCCCHHHHHHHHHHHHHHHHHHCCEEECCCCCCHHHHHHHC----CCCCCCCCC
Q ss_conf -721100012456835899950810002410356666788899850301102013589856634312----898532222
Q gi|254780809|r 253 -TTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK----NIDFIFIGT 327 (440)
Q Consensus 253 -TTRD~i~~~~~i~g~~~~l~DTaGir~t~d~IE~~GI~ra~~~i~~aDlil~v~D~~~~~~~~~~~----~~~~i~V~N 327 (440)
.|+|.+. -++-.|+.+.|+-|.|+-+++-.| .+-+|.+++|.-+..-++++..| ...-++|+|
T Consensus 108 ~~t~~~i~-lleaaGfD~IivETVGVGQsE~~v-----------~~~aD~~llv~~Pg~GDeiQ~iKaGImEiaDi~vVN 175 (267)
T pfam03308 108 RATREAIL-LLDAAGFDVIIIETVGVGQSEVDI-----------ANMADTFVLVTIPGGGDDLQGIKAGLMEIADIYVVN 175 (267)
T ss_pred HHHHHHHH-HHHHCCCCEEEEECCCCCCCCHHH-----------HHHCCEEEEEECCCCCHHHHHHHHHHHHHCCEEEEE
T ss_conf 76999999-999779999999247777530355-----------541576899955887608889875376535489996
Q ss_pred CCCCCCCCC-------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEHHHHHHHHHHHHHH
Q ss_conf 333446542-------------------0000013333232358999999999632203588632014899999999999
Q gi|254780809|r 328 KSDLYSTYT-------------------EEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVR 388 (440)
Q Consensus 328 K~Dl~~~~~-------------------~~~~~~ISaktg~Gi~~L~~~I~~~l~~~~~~~~~~i~~~~Rq~~~L~~a~~ 388 (440)
|+|+..... ....+.+||.+|+|+++|.+.|.+....... ...+...|+.+.......
T Consensus 176 KaD~~~A~~~~~~l~~~l~l~~~~~~~W~p~Vl~tSA~~g~Gi~el~~~I~~~~~~l~~---sG~l~~rR~~q~~~w~~~ 252 (267)
T pfam03308 176 KADLPGAERTARELRSALHLLTPKEAGWRPPVLTTSAVTGEGIDELWDAIEEHREFLTA---TGLLAARRRARIEEWLKT 252 (267)
T ss_pred CCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHH---CCHHHHHHHHHHHHHHHH
T ss_conf 67647699999999999851798778999998998747889999999999999999997---886999999999999999
Q ss_pred HHH
Q ss_conf 999
Q gi|254780809|r 389 YLE 391 (440)
Q Consensus 389 ~L~ 391 (440)
.++
T Consensus 253 ~I~ 255 (267)
T pfam03308 253 LVE 255 (267)
T ss_pred HHH
T ss_conf 999
No 180
>CHL00189 infB translation initiation factor 2; Provisional
Probab=99.19 E-value=7.9e-11 Score=94.93 Aligned_cols=138 Identities=22% Similarity=0.322 Sum_probs=93.3
Q ss_pred HHHHHHCCCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCC-CCEEECCCCCCC----CCEEEEEEECCHHCCCCHHHHHH
Q ss_conf 5543202302431146631888999985520002345468-721100012456----83589995081000241035666
Q gi|254780809|r 213 GEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPG-TTRDVLTIDLDL----EGYLVKISDTAGIRETDDIVEKE 287 (440)
Q Consensus 213 ~~~l~~g~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~G-TTRD~i~~~~~i----~g~~~~l~DTaGir~t~d~IE~~ 287 (440)
..+....+-|.|.|...-||.||+-+|-+.+. +...+| -|--+=-..+.+ +|.+++|+||||= |..
T Consensus 266 ~~l~~RpPVVTIMGHVDHGKTsLLD~iR~t~V--a~~EaGGITQhIGAy~V~~~~~~~~~~ITFlDTPGH-------eAF 336 (770)
T CHL00189 266 IHLIRRPPIVTILGHVDHGKTTLLDAIRKTNI--AQKEAGGITQKIGAYEVEVPYKDQNQKIVFLDTPGH-------EAF 336 (770)
T ss_pred HCCCCCCCEEEEECCCCCCHHHHHHHHHCCCC--CCCCCCCCCCEECEEEEEECCCCCCCEEEEECCCCH-------HHH
T ss_conf 10677899899857725772037888852885--134567655503529997515788975899559946-------889
Q ss_pred HHHHHHHHHHHHCCEEECCCCCC---HHHHH-----HHCCCCCCCCCCCCCCCCCCCHH-------------------HH
Q ss_conf 67888998503011020135898---56634-----31289853222233344654200-------------------00
Q gi|254780809|r 288 GIKRTFLEVENADLILLLKEINS---KKEIS-----FPKNIDFIFIGTKSDLYSTYTEE-------------------YD 340 (440)
Q Consensus 288 GI~ra~~~i~~aDlil~v~D~~~---~~~~~-----~~~~~~~i~V~NK~Dl~~~~~~~-------------------~~ 340 (440)
.-=|+ .-+.-.|++++|+.+.+ ++..+ ...+.|+|+.+||+|+.....+. ..
T Consensus 337 t~MRa-RGA~vTDIvILVVAADDGVmPQTiEAI~hakaA~VPiIVAINKiDkp~an~~rVk~eL~e~gli~EewGGd~~~ 415 (770)
T CHL00189 337 SSMRS-RGANVTDIAILIVAADDGVKPQTIEAINHIQAANVPIIVAINKIDKENANIDRVKQELSKYNLISEKWGGQTPM 415 (770)
T ss_pred HHHHH-CCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHCCCCHHHCCCCEEE
T ss_conf 99986-27866667999996578856727999999987699889998774589988578999999869552223795599
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q ss_conf 01333323235899999999
Q gi|254780809|r 341 HLISSFTGEGLEELINKIKS 360 (440)
Q Consensus 341 ~~ISaktg~Gi~~L~~~I~~ 360 (440)
+.|||++|+||++|+++|.-
T Consensus 416 V~ISAktg~gId~LLE~IlL 435 (770)
T CHL00189 416 IPISALQGTNIDKLLEMILL 435 (770)
T ss_pred EEEEECCCCCHHHHHHHHHH
T ss_conf 99661679887999999999
No 181
>TIGR00231 small_GTP small GTP-binding protein domain; InterPro: IPR005225 Proteins with a small GTP-binding domain include Ras, RhoA, Rab11, translation elongation factor G, translation initiation factor IF-2, tetratcycline resistance protein TetM, CDC42, Era, ADP-ribosylation factors, tdhF, and many others . In some proteins the domain occurs more than once. Among them there is a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.; GO: 0005525 GTP binding.
Probab=99.18 E-value=3.5e-11 Score=97.34 Aligned_cols=140 Identities=30% Similarity=0.451 Sum_probs=111.8
Q ss_pred CCCEEEECCCCCCHHHHHHHHHCCHHCCCCCCC--CCCEEECCCCCCCCC-----------EEEEEEECCHH--CCCCHH
Q ss_conf 230243114663188899998552000234546--872110001245683-----------58999508100--024103
Q gi|254780809|r 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIP--GTTRDVLTIDLDLEG-----------YLVKISDTAGI--RETDDI 283 (440)
Q Consensus 219 g~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~--GTTRD~i~~~~~i~g-----------~~~~l~DTaGi--r~t~d~ 283 (440)
..+++++|.||+|||+|+|.+++.++++++..| |+||++....+..+| ..+.++||||+ ++..+.
T Consensus 3 ~~~~~~~g~~~~Gk~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~w~~~~~~~d~~G~~~~~~~~~ 82 (186)
T TIGR00231 3 DIKIGIVGDPNVGKSTLLNRLLGNKGSITESGPTDGTTRDYVTESIEEDGKTITGATFQWGYKFNLLDTPGLHRQEDYDA 82 (186)
T ss_pred CEEEEEEECCCCCHHHHHHHHHHCCCCEEECCCCCCCCHHHHEEEEEECCEEEEEEEEECCEEEEEEECCCCHHHHHHHH
T ss_conf 50589973477660455544541012001023233320000001134558023434310242789862577113555544
Q ss_pred HHHHHHHHHHHHHHHHCCEEECCCCCCHHH------HHH--HCCCCCCCCCCCCCCCCCCCH------------------
Q ss_conf 566667888998503011020135898566------343--128985322223334465420------------------
Q gi|254780809|r 284 VEKEGIKRTFLEVENADLILLLKEINSKKE------ISF--PKNIDFIFIGTKSDLYSTYTE------------------ 337 (440)
Q Consensus 284 IE~~GI~ra~~~i~~aDlil~v~D~~~~~~------~~~--~~~~~~i~V~NK~Dl~~~~~~------------------ 337 (440)
+.+.....+...+...|+++.+.+..+... ... ..+.|++++.||.|+....+.
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (186)
T TIGR00231 83 LRRLYYPEVLSSLEVLDLVILVLDVEDGLEKDTKEIIHHADKYGVPILLVGNKIDLKDEKPGYFVDLKPHLASLFAKLNG 162 (186)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCEEEHHHHHHHHHHHHCC
T ss_conf 54332234454443333333222111001025677875322127416998513365546754010000345555554236
Q ss_pred HH-HHHHHHHHHHHHHHHHHHH
Q ss_conf 00-0013333232358999999
Q gi|254780809|r 338 EY-DHLISSFTGEGLEELINKI 358 (440)
Q Consensus 338 ~~-~~~ISaktg~Gi~~L~~~I 358 (440)
.. ...+|+.++.|++.+.+.+
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~ 184 (186)
T TIGR00231 163 EPHFIPLSAETGKGIDSLFGLV 184 (186)
T ss_pred CCCEEECCHHHHCCHHHHHHHH
T ss_conf 6401111001110045566654
No 182
>KOG1486 consensus
Probab=99.15 E-value=4e-11 Score=97.01 Aligned_cols=146 Identities=21% Similarity=0.325 Sum_probs=105.2
Q ss_pred HHHHC-CCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCCEEECCCCCCCCCEEEEEEECCHHCCCCHHHHHHHH-HHH
Q ss_conf 43202-3024311466318889999855200023454687211000124568358999508100024103566667-888
Q gi|254780809|r 215 IIRNG-YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGI-KRT 292 (440)
Q Consensus 215 ~l~~g-~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTTRD~i~~~~~i~g~~~~l~DTaGir~t~d~IE~~GI-~ra 292 (440)
..+.| .||+++|.|.||||||+..++..... ..++..||---|-+.+.++|-.+.++|.|||-+... +..|- +..
T Consensus 57 V~KsGdaRValIGfPSVGKStlLs~iT~T~Se-aA~yeFTTLtcIpGvi~y~ga~IQllDLPGIieGAs--qgkGRGRQv 133 (364)
T KOG1486 57 VLKSGDARVALIGFPSVGKSTLLSKITSTHSE-AASYEFTTLTCIPGVIHYNGANIQLLDLPGIIEGAS--QGKGRGRQV 133 (364)
T ss_pred EECCCCEEEEEECCCCCCHHHHHHHHHCCHHH-HHCCEEEEEEEECCEEEECCCEEEEECCCCCCCCCC--CCCCCCCEE
T ss_conf 53158737999648874478788876411022-211024678730316876683479962753000211--378877268
Q ss_pred HHHHHHHCCEEECCCCCCHHHH--------HH-----HC-----------------------------------------
Q ss_conf 9985030110201358985663--------43-----12-----------------------------------------
Q gi|254780809|r 293 FLEVENADLILLLKEINSKKEI--------SF-----PK----------------------------------------- 318 (440)
Q Consensus 293 ~~~i~~aDlil~v~D~~~~~~~--------~~-----~~----------------------------------------- 318 (440)
...+..||+||.|.|++..... .. .+
T Consensus 134 iavArtaDlilMvLDatk~e~qr~~le~ELe~vGiRLNk~~Pniy~k~kk~gGi~f~~T~plT~~~ek~i~~ILheykI~ 213 (364)
T KOG1486 134 IAVARTADLILMVLDATKSEDQREILEKELEAVGIRLNKRKPNIYFKKKKTGGISFNTTVPLTHCDEKLIYTILHEYKIH 213 (364)
T ss_pred EEEEECCCEEEEEECCCCCHHHHHHHHHHHHHHCEECCCCCCCEEEEEECCCCEEEEEEECCCCCCHHHHHHHHHHHEEC
T ss_conf 88740365899995177615678999999997413414789975888743687677424045235499999999887445
Q ss_pred ------------------------CCCCCCCCCCCCCCCCCC------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf ------------------------898532222333446542------000001333323235899999999963
Q gi|254780809|r 319 ------------------------NIDFIFIGTKSDLYSTYT------EEYDHLISSFTGEGLEELINKIKSILS 363 (440)
Q Consensus 319 ------------------------~~~~i~V~NK~Dl~~~~~------~~~~~~ISaktg~Gi~~L~~~I~~~l~ 363 (440)
-.+-++|+||+|..+-.. .+..+.|||.-+-|++.|++.|.+.+.
T Consensus 214 Naevl~Red~t~DdfIDvi~gnr~Y~~ClYvYnKID~vs~eevdrlar~PnsvViSC~m~lnld~lle~iWe~l~ 288 (364)
T KOG1486 214 NAEVLFREDCTVDDFIDVIEGNRVYIKCLYVYNKIDQVSIEEVDRLARQPNSVVISCNMKLNLDRLLERIWEELN 288 (364)
T ss_pred CCEEEEECCCCHHHHHHHHHCCCEEEEEEEEEECCCEECHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHHHHC
T ss_conf 513898437866878888745632788889951244203888889862898589980344688999999998741
No 183
>cd04173 Rnd2_Rho7 Rnd2/Rho7 subfamily. Rnd2/Rho7 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd3/RhoE/Rho8. Rnd2/Rho7 is transiently expressed in radially migrating cells in the brain while they are within the subventricular zone of the hippocampus and cerebral cortex. These migrating cells typically develop into pyramidal neurons. Cells that exogenously expressed Rnd2/Rho7 failed to migrate to upper layers of the brain, suggesting that Rnd2/Rho7 plays a role in the radial migration and morphological changes of developing pyramidal neurons, and that Rnd2/Rho7 degradation is necessary for proper cellular migration. The Rnd2/Rho7 GEF Rapostlin is found primarily in the brain and together with Rnd2/Rho7 induces dendrite branching. Unlike Rnd1/Rho6 and Rnd3/RhoE/Rho8, which are RhoA antagonists, Rnd2/Rho7 binds the GEF Pragmin and significantly stimulates RhoA activity and Rho-A mediated cell contraction. Rnd2/Rho7 is also found to be expressed in sperma
Probab=99.14 E-value=3.6e-10 Score=90.39 Aligned_cols=133 Identities=20% Similarity=0.290 Sum_probs=88.3
Q ss_pred CCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCCEEECCCCCCCCCE--EEEEEECCHHCCCCHHHHHHHHHHHHHHHH
Q ss_conf 302431146631888999985520002345468721100012456835--899950810002410356666788899850
Q gi|254780809|r 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY--LVKISDTAGIRETDDIVEKEGIKRTFLEVE 297 (440)
Q Consensus 220 ~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTTRD~i~~~~~i~g~--~~~l~DTaGir~t~d~IE~~GI~ra~~~i~ 297 (440)
++|+++|-++||||||+++++...- ..++.-|.=|.-...+.++|. .+.|.||||--+-. . + ......
T Consensus 2 ~KiVlvGD~~VGKTsLl~~f~~~~F--~~~y~pTi~~~~~~~~~vd~~~v~L~iWDTAGqE~y~----~--l--r~~yyr 71 (222)
T cd04173 2 CKIVVVGDAECGKTALLQVFAKDAY--PGSYVPTVFENYTASFEIDKRRIELNMWDTSGSSYYD----N--V--RPLAYP 71 (222)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCC--CCCCCCCEEEEEEEEEEECCEEEEEEEECCCCCCHHH----H--H--HHHHCC
T ss_conf 0999989899898999999963999--9984784587789999999999999997688850345----5--6--787503
Q ss_pred HHCCEEECCCCCCHHHHHH------------HCCCCCCCCCCCCCCCCCCC---------------HH-----------H
Q ss_conf 3011020135898566343------------12898532222333446542---------------00-----------0
Q gi|254780809|r 298 NADLILLLKEINSKKEISF------------PKNIDFIFIGTKSDLYSTYT---------------EE-----------Y 339 (440)
Q Consensus 298 ~aDlil~v~D~~~~~~~~~------------~~~~~~i~V~NK~Dl~~~~~---------------~~-----------~ 339 (440)
.||.+|+|+|.+++..+.. ..+.|+++|.||+||-.... ++ .
T Consensus 72 ~a~~~llvfdit~~~SF~~v~~~W~~ei~~~~p~~piiLVGnK~DLR~d~~~~~el~~~~~~pVt~eeg~~lA~~~ga~~ 151 (222)
T cd04173 72 DSDAVLICFDISRPETLDSVLKKWQGETQEFCPNAKVVLVGCKLDMRTDLATLRELSKQRLIPVTHEQGTVLAKQVGAVS 151 (222)
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCE
T ss_conf 69899999838977889999999999999858999789995874245687889999855788878999999999769988
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHH
Q ss_conf 0013333232-3589999999996
Q gi|254780809|r 340 DHLISSFTGE-GLEELINKIKSIL 362 (440)
Q Consensus 340 ~~~ISaktg~-Gi~~L~~~I~~~l 362 (440)
-+..|||+++ |++++.+......
T Consensus 152 y~EcSAk~~~n~V~evF~~a~~~~ 175 (222)
T cd04173 152 YVECSSRSSERSVRDVFHVATVAS 175 (222)
T ss_pred EEECCCCCCCCCHHHHHHHHHHHH
T ss_conf 998884868749899999999999
No 184
>TIGR00092 TIGR00092 GTP-binding protein YchF; InterPro: IPR004396 This is a family of conserved hypothetical proteins found in both prokaryotes and eukaryotes. While the function of these proteins is not known, the crystal structure of P44681 from SWISSPROT from Haemophilus influenzae has been determined . This protein consists of three domains: an N-terminal domain which has a mononucleotide binding fold typical for the P-loop NTPases, a central domain which forms an alpha-helical coiled coil, and a C-terminal domain composed of a six-stranded half-barrel curved around an alpha helix. The central and C-terminal domains are topologically similar to RNA-binding proteins, while the N-terminal region contains the features typical of GTP-dependent molecular switches. The purified protein was capable of binding both double-stranded nucleic acid and GTP. It was suggested, therefore, that this protein might be part of a nucleoprotein complex and could function as a GTP-dependent translation factor.; GO: 0005525 GTP binding.
Probab=99.14 E-value=4.8e-10 Score=89.48 Aligned_cols=190 Identities=21% Similarity=0.196 Sum_probs=111.5
Q ss_pred CCCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCCEEECCCCCCCCC------------------EEEEEEECCHHCCC
Q ss_conf 230243114663188899998552000234546872110001245683------------------58999508100024
Q gi|254780809|r 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG------------------YLVKISDTAGIRET 280 (440)
Q Consensus 219 g~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTTRD~i~~~~~i~g------------------~~~~l~DTaGir~t 280 (440)
|++-.|||.||||||||||||+....+=..++|..|=|.-.+.+.+.. ..++++|-||+-.-
T Consensus 2 nl~aGIVGLpNVGKSTlF~AiT~~~~ge~ANYPFaTIePn~g~V~vpd~RLd~La~i~k~~k~evptt~~fvDIAGLvkG 81 (390)
T TIGR00092 2 NLKAGIVGLPNVGKSTLFNAITNLQLGEAANYPFATIEPNTGVVNVPDPRLDKLAEIYKPEKVEVPTTLEFVDIAGLVKG 81 (390)
T ss_pred CCCCCCEECCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEECCCCCHHHHHHHHCCCEEECCEEEEEEEECCCCCC
T ss_conf 88765300687605579999982667776688876516764446258853334776406420411404899862234100
Q ss_pred CHHHHHHHHHHHHHHHHHHCCEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 10356666788899850301102013589856634312898532222333446542000001333323235899999999
Q gi|254780809|r 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKS 360 (440)
Q Consensus 281 ~d~IE~~GI~ra~~~i~~aDlil~v~D~~~~~~~~~~~~~~~i~V~NK~Dl~~~~~~~~~~~ISaktg~Gi~~L~~~I~~ 360 (440)
...=|-+| .+=+..|.+.|.|.+|+=..+ +.+++.|-|+.|=.....--.. -.--+.=+-++..++.+.+
T Consensus 82 AS~GeGLG-N~FLanIReVd~I~hVVRCF~--------d~~I~HV~G~VDPV~D~evI~~-EL~LaDle~~~~~~E~~~~ 151 (390)
T TIGR00092 82 ASKGEGLG-NQFLANIREVDAICHVVRCFE--------DDDIIHVEGKVDPVRDLEVINN-ELILADLEFVEKILERLEK 151 (390)
T ss_pred CCCCCCCH-HHHHHCCCCCCCCEEEEEEEE--------CCCEEEEECCCCCCCCHHHHHH-HHHHHHHHHHHHHHHHHHH
T ss_conf 01578723-344310320331047886330--------7735885175176232688888-8888889999999999999
Q ss_pred HHHHHCCCCCCCEEHHHHHHHHHHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHHHHHHHCC
Q ss_conf 9632203588632014899999999999999997532799801--4659999999863567185
Q gi|254780809|r 361 ILSNKFKKLPFSIPSHKRHLYHLSQTVRYLEMASLNEKDCGLD--IIAENLRLASVSLGKITGC 422 (440)
Q Consensus 361 ~l~~~~~~~~~~i~~~~Rq~~~L~~a~~~L~~~~~~~~~~~~E--liAeeLr~A~~~L~eItG~ 422 (440)
.+..........=--...-...|+.++..|+..+.... +. +-++|+ .+++.++-+|-+
T Consensus 152 ~i~~~~k~a~~~DK~~K~E~~lL~~~~~~L~~g~~~~~---~~dhl~~~E~-~~iks~~lLT~K 211 (390)
T TIGR00092 152 RIGKVKKKAKEGDKEAKEELALLEKILEGLENGQMVRH---VGDHLTEEEL-KIIKSLNLLTAK 211 (390)
T ss_pred HHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEE---CCCCCCHHHH-HHHHHHCCHHHH
T ss_conf 99974042310037788889999999999863884331---0234588899-999862212100
No 185
>cd01888 eIF2_gamma eIF2-gamma (gamma subunit of initiation factor 2). eIF2 is a heterotrimeric translation initiation factor that consists of alpha, beta, and gamma subunits. The GTP-bound gamma subunit also binds initiator methionyl-tRNA and delivers it to the 40S ribosomal subunit. Following hydrolysis of GTP to GDP, eIF2:GDP is released from the ribosome. The gamma subunit has no intrinsic GTPase activity, but is stimulated by the GTPase activating protein (GAP) eIF5, and GDP/GTP exchange is stimulated by the guanine nucleotide exchange factor (GEF) eIF2B. eIF2B is a heteropentamer, and the epsilon chain binds eIF2. Both eIF5 and eIF2B-epsilon are known to bind strongly to eIF2-beta, but have also been shown to bind directly to eIF2-gamma. It is possible that eIF2-beta serves simply as a high-affinity docking site for eIF5 and eIF2B-epsilon, or that eIF2-beta serves a regulatory role. eIF2-gamma is found only in eukaryotes and archaea. It is closely related to SelB, the sel
Probab=99.14 E-value=2e-10 Score=92.13 Aligned_cols=137 Identities=20% Similarity=0.126 Sum_probs=84.9
Q ss_pred CCEEEECCCCCCHHHHHHHHHCC---------HHCCCCCC------------CCCCEEECCC--------CCCCC-----
Q ss_conf 30243114663188899998552---------00023454------------6872110001--------24568-----
Q gi|254780809|r 220 YKIVILGHSNAGKSSLFNALAKK---------DVAIVTDI------------PGTTRDVLTI--------DLDLE----- 265 (440)
Q Consensus 220 ~~v~i~G~pN~GKSSL~N~L~~~---------~~aIVs~~------------~GTTRD~i~~--------~~~i~----- 265 (440)
++|+++|....|||||+-+|+|. +|.|.-.. .+.+++.-.. .....
T Consensus 1 vNi~iiGHVDhGKSTLi~~L~g~~~~~~~~e~er~it~klg~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (203)
T cd01888 1 INIGTIGHVAHGKSTLVKALSGVWTVRFKEELERNITIKLGYANAKIYKCPNCGCPRPYCYRSKEDSPECECPGCGGETK 80 (203)
T ss_pred CEEEEEEEECCCHHHHHHHHHCCCHHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCCCCHHHHCCCCCCEEEECCCCCCCC
T ss_conf 96999988578799999997085124407888677603111456666511121223101111012442145314565431
Q ss_pred -CEEEEEEECCHHCCCCHHHHHHHHHHHHHHHHHHCCEEECCCCCCHH-H---H-----HHHCC-CCCCCCCCCCCCCCC
Q ss_conf -35899950810002410356666788899850301102013589856-6---3-----43128-985322223334465
Q gi|254780809|r 266 -GYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK-E---I-----SFPKN-IDFIFIGTKSDLYST 334 (440)
Q Consensus 266 -g~~~~l~DTaGir~t~d~IE~~GI~ra~~~i~~aDlil~v~D~~~~~-~---~-----~~~~~-~~~i~V~NK~Dl~~~ 334 (440)
...+.|+||||=++- +.....-+..||..++|+|+++.- . . ...-+ +++|+++||+|+.+.
T Consensus 81 ~~r~~tiiD~PGH~df--------~~nmi~Gas~aD~aiLvVdA~eG~~~~QT~eH~~l~~~lgv~~iIV~vNKmDlv~~ 152 (203)
T cd01888 81 LVRHVSFVDCPGHEIL--------MATMLSGAAVMDGALLLIAANEPCPQPQTSEHLAALEIMGLKHIIIVQNKIDLVKE 152 (203)
T ss_pred CEEEEEEEECCCHHHH--------HHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCCCH
T ss_conf 1247999868987999--------99999766434766898643667750779999999998499863677507777886
Q ss_pred CCH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 420------------------000013333232358999999999632
Q gi|254780809|r 335 YTE------------------EYDHLISSFTGEGLEELINKIKSILSN 364 (440)
Q Consensus 335 ~~~------------------~~~~~ISaktg~Gi~~L~~~I~~~l~~ 364 (440)
... ...+.|||++|.||++|+++|.+.++.
T Consensus 153 ~~~~~~~~ei~~~l~~~~~~~~~iIPiSA~~G~NI~~ll~~i~~~ip~ 200 (203)
T cd01888 153 EQALENYEQIKKFVKGTIAENAPIIPISAQLKYNIDVLLEYIVKKIPT 200 (203)
T ss_pred HHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHCCC
T ss_conf 789999999999855216899859991478897999999999867829
No 186
>cd04174 Rnd1_Rho6 Rnd1/Rho6 subfamily. Rnd1/Rho6 is a member of the novel Rho subfamily Rnd, together with Rnd2/Rho7 and Rnd3/RhoE/Rho8. Rnd1/Rho6 binds GTP but does not hydrolyze it to GDP, indicating that it is constitutively active. In rat, Rnd1/Rho6 is highly expressed in the cerebral cortex and hippocampus during synapse formation, and plays a role in spine formation. Rnd1/Rho6 is also expressed in the liver and in endothelial cells, and is upregulated in uterine myometrial cells during pregnancy. Like Rnd3/RhoE/Rho8, Rnd1/Rho6 is believed to function as an antagonist to RhoA. Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho proteins. Due to the presence of truncated sequences in this CD, the lipid modification site is not available for annotation.
Probab=99.14 E-value=4.5e-10 Score=89.66 Aligned_cols=138 Identities=23% Similarity=0.302 Sum_probs=91.8
Q ss_pred CCCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCCEEECCCCCCCCC--EEEEEEECCHHCCCCHHHHHHHHHHHHHHH
Q ss_conf 230243114663188899998552000234546872110001245683--589995081000241035666678889985
Q gi|254780809|r 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG--YLVKISDTAGIRETDDIVEKEGIKRTFLEV 296 (440)
Q Consensus 219 g~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTTRD~i~~~~~i~g--~~~~l~DTaGir~t~d~IE~~GI~ra~~~i 296 (440)
-++|+++|-++||||||++++....= -.++..|-=|.-...+.++| +.+.|.||||--+-. .......
T Consensus 13 ~~KiVlVGD~~VGKTsLl~~~~~~~F--~~~y~pTv~~~~~~~i~v~~~~v~L~lWDTAGqE~y~--------~lr~~yY 82 (232)
T cd04174 13 RCKLVLVGDVQCGKTAMLQVLAKDCY--PETYVPTVFENYTAGLETEEQRVELSLWDTSGSPYYD--------NVRPLCY 82 (232)
T ss_pred EEEEEEECCCCCCHHHHHHHHHHCCC--CCCCCCCEEEEEEEEEEECCEEEEEEEEECCCCCCCC--------HHHHHHH
T ss_conf 88999999899899999999973989--9985883688889999999999999998389970100--------3679974
Q ss_pred HHHCCEEECCCCCCHHHHHH------------HCCCCCCCCCCCCCCCCCCC---------H-------------H----
Q ss_conf 03011020135898566343------------12898532222333446542---------0-------------0----
Q gi|254780809|r 297 ENADLILLLKEINSKKEISF------------PKNIDFIFIGTKSDLYSTYT---------E-------------E---- 338 (440)
Q Consensus 297 ~~aDlil~v~D~~~~~~~~~------------~~~~~~i~V~NK~Dl~~~~~---------~-------------~---- 338 (440)
..||++|+++|.+++..+.. ..+.|+++|.||+||-.... . .
T Consensus 83 ~~a~~~ll~Fdvt~~~Sfe~~~~~Wi~Ei~~~~p~~piiLVGnK~DLr~d~~~l~~L~~~~~~pVt~eeg~~~Ak~iga~ 162 (232)
T cd04174 83 SDSDAVLLCFDISRPETVDSALKKWKAEIMDYCPSTRILLIGCKTDLRTDLSTLMELSNQKQAPISYEQGCALAKQLGAE 162 (232)
T ss_pred CCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECHHCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHCCCC
T ss_conf 06878999996898799998999999999986899978999876021547577889975688875799999999974997
Q ss_pred HHHHHHHHHHH-HHHHHHHHHHHHHHHHC
Q ss_conf 00013333232-35899999999963220
Q gi|254780809|r 339 YDHLISSFTGE-GLEELINKIKSILSNKF 366 (440)
Q Consensus 339 ~~~~ISaktg~-Gi~~L~~~I~~~l~~~~ 366 (440)
.-+..||+||+ |++++.+.....+.+..
T Consensus 163 ~Y~E~SA~tge~~v~~vF~~a~~~~~~~~ 191 (232)
T cd04174 163 VYLECSAFTSEKSIHSIFRSASLLCLNKL 191 (232)
T ss_pred EEEECCCCCCCCCHHHHHHHHHHHHHHCC
T ss_conf 89987568666259999999999998545
No 187
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.13 E-value=2.1e-10 Score=91.92 Aligned_cols=130 Identities=14% Similarity=0.125 Sum_probs=88.1
Q ss_pred ECCCCCCHHHHHHHHHCCHHCCCCCCCCCC-EEECCCCCCCCC--EEEEEEECCHHCCCCHHHHHHHHHHHHHHHHHHCC
Q ss_conf 114663188899998552000234546872-110001245683--58999508100024103566667888998503011
Q gi|254780809|r 225 LGHSNAGKSSLFNALAKKDVAIVTDIPGTT-RDVLTIDLDLEG--YLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301 (440)
Q Consensus 225 ~G~pN~GKSSL~N~L~~~~~aIVs~~~GTT-RD~i~~~~~i~g--~~~~l~DTaGir~t~d~IE~~GI~ra~~~i~~aDl 301 (440)
+|.+.||||||+++++..+= ...+.-|. -|+....+.+++ +.+.+.||||--.-. .........|+.
T Consensus 1 vGD~gVGKTsli~R~~~~~F--~~~y~pTiGvd~~~~~~~~~~~~i~l~iWDTAGqE~f~--------sl~~~yyr~a~~ 70 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEF--EKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFG--------GLRDGYYIQGQC 70 (200)
T ss_pred CCCCCCCHHHHHHHHHCCCC--CCCCCCCEEEEEEEEEEEECCEEEEEEEEECCCCCCCC--------CCCHHHCCCCCE
T ss_conf 98988789999999940999--99978871489899999989989999999898870001--------102655057878
Q ss_pred EEECCCCCCHHHHH-----------HHCCCCCCCCCCCCCCCCCCCHHH-----------HHHHHHHHHHHHHHHHHHHH
Q ss_conf 02013589856634-----------312898532222333446542000-----------00133332323589999999
Q gi|254780809|r 302 ILLLKEINSKKEIS-----------FPKNIDFIFIGTKSDLYSTYTEEY-----------DHLISSFTGEGLEELINKIK 359 (440)
Q Consensus 302 il~v~D~~~~~~~~-----------~~~~~~~i~V~NK~Dl~~~~~~~~-----------~~~ISaktg~Gi~~L~~~I~ 359 (440)
+++|+|.+++..+. ...+.|+++|.||+||.+...... -+.+|||+|.|++++-..|.
T Consensus 71 ~IlvfDvt~~~SF~~l~~W~~~l~~~~~~ipiiLvGNK~DL~~r~V~~e~~~~a~~~~~~y~EtSAKt~~Nv~e~F~~La 150 (200)
T smart00176 71 AIIMFDVTARVTYKNVPNWHRDLVRVCENIPIVLCGNKVDVKDRKVKAKSITFHRKKNLQYYDISAKSNYNFEKPFLWLA 150 (200)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHH
T ss_conf 89996358778999899999999985799988999988757404365999999998799789830046969799999999
Q ss_pred HHHHH
Q ss_conf 99632
Q gi|254780809|r 360 SILSN 364 (440)
Q Consensus 360 ~~l~~ 364 (440)
+.+-+
T Consensus 151 r~L~~ 155 (200)
T smart00176 151 RKLIG 155 (200)
T ss_pred HHHHC
T ss_conf 99838
No 188
>PRK09435 arginine/ornithine transport system ATPase; Provisional
Probab=99.13 E-value=2.6e-10 Score=91.37 Aligned_cols=159 Identities=21% Similarity=0.249 Sum_probs=98.3
Q ss_pred CCCEEEECCCCCCHHHHHHHHHCC------HHCCC-----CCCCC-----------------------------------
Q ss_conf 230243114663188899998552------00023-----45468-----------------------------------
Q gi|254780809|r 219 GYKIVILGHSNAGKSSLFNALAKK------DVAIV-----TDIPG----------------------------------- 252 (440)
Q Consensus 219 g~~v~i~G~pN~GKSSL~N~L~~~------~~aIV-----s~~~G----------------------------------- 252 (440)
.++|.|.|+|-||||||+++|... ..|++ |++-|
T Consensus 49 a~~iGiTG~pG~GKStli~~l~~~~~~~g~~v~vlavDPsS~~sgGaiLGDr~Rm~~~~~~~~~fiRs~~srg~lgg~~~ 128 (325)
T PRK09435 49 ALRIGITGVPGVGKSTFIEALGMHLIEQGHKVAVLAVDPSSTRTGGSILGDKTRMERLSRHPNAFIRPSPSSGTLGGVAR 128 (325)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCCCCH
T ss_conf 25997427999868899999999999679858999978999988861010388887614799848840677888677335
Q ss_pred CCEEECCCCCCCCCEEEEEEECCHHCCCCHHHHHHHHHHHHHHHHHHCCEEECCCCCCHHHHHHHC----CCCCCCCCCC
Q ss_conf 721100012456835899950810002410356666788899850301102013589856634312----8985322223
Q gi|254780809|r 253 TTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPK----NIDFIFIGTK 328 (440)
Q Consensus 253 TTRD~i~~~~~i~g~~~~l~DTaGir~t~d~IE~~GI~ra~~~i~~aDlil~v~D~~~~~~~~~~~----~~~~i~V~NK 328 (440)
.|++.+. -++-.|+.+.|+.|.|+.+++- ....-+|.+++|.-+..-++++..| ...-++|+||
T Consensus 129 ~~~~~~~-~~~a~g~d~i~iETvGvGQ~e~-----------~v~~~~d~~~~~~~p~~GD~~Q~~K~GImEiaDi~vVNK 196 (325)
T PRK09435 129 KTRETML-LCEAAGFDVILVETVGVGQSET-----------AVAGMVDFFLLLQLPGAGDELQGIKKGIMELADLIVINK 196 (325)
T ss_pred HHHHHHH-HHHHCCCCEEEEEECCCCHHHH-----------HHHHHCCEEEEEECCCCCCHHHHHHHHHHHHCCEEEEEC
T ss_conf 4999999-9997799989997067771488-----------998742668888358876088998865775042689977
Q ss_pred CCCCCC----------------------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEHHHHHHHHHHHH
Q ss_conf 334465----------------------4200000133332323589999999996322035886320148999999999
Q gi|254780809|r 329 SDLYST----------------------YTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQT 386 (440)
Q Consensus 329 ~Dl~~~----------------------~~~~~~~~ISaktg~Gi~~L~~~I~~~l~~~~~~~~~~i~~~~Rq~~~L~~a 386 (440)
+|.... ....+.+.+||.+|+|+++|.+.|.++...... ...+...|+.+.....
T Consensus 197 aDgd~~~~A~~t~~e~~~aL~l~~~~~~~W~ppVl~~SA~~g~GI~eL~~~I~~h~~~l~~---sG~l~~rR~~Q~~~wm 273 (325)
T PRK09435 197 ADGDNHTAARRAAAEYRSALRLLRPKDPGWQPPVLTCSALEGEGIDELWQAIEDHRAALTA---SGEFAARRREQQVEWM 273 (325)
T ss_pred CCCCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHH---CCHHHHHHHHHHHHHH
T ss_conf 6755658999999999999860788789999998999815899879999999999999997---8869999999999999
Q ss_pred HHHHHH
Q ss_conf 999999
Q gi|254780809|r 387 VRYLEM 392 (440)
Q Consensus 387 ~~~L~~ 392 (440)
...++.
T Consensus 274 ~~~I~e 279 (325)
T PRK09435 274 WEMVEE 279 (325)
T ss_pred HHHHHH
T ss_conf 999999
No 189
>cd04172 Rnd3_RhoE_Rho8 Rnd3/RhoE/Rho8 subfamily. Rnd3/RhoE/Rho8 is a member of the novel Rho subfamily Rnd, together with Rnd1/Rho6 and Rnd2/Rho7. Rnd3/RhoE is known to bind the serine-threonine kinase ROCK I. Unphosphorylated Rnd3/RhoE associates primarily with membranes, but ROCK I-phosphorylated Rnd3/RhoE localizes in the cytosol. Phosphorylation of Rnd3/RhoE correlates with its activity in disrupting RhoA-induced stress fibers and inhibiting Ras-induced fibroblast transformation. In cells that lack stress fibers, such as macrophages and monocytes, Rnd3/RhoE induces a redistribution of actin, causing morphological changes in the cell. In addition, Rnd3/RhoE has been shown to inhibit cell cycle progression in G1 phase at a point upstream of the pRb family pocket protein checkpoint. Rnd3/RhoE has also been shown to inhibit Ras- and Raf-induced fibroblast transformation. In mammary epithelial tumor cells, Rnd3/RhoE regulates the assembly of the apical junction complex and tight
Probab=99.12 E-value=3.5e-10 Score=90.45 Aligned_cols=132 Identities=22% Similarity=0.306 Sum_probs=86.0
Q ss_pred CCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCCEEECCCCCCCCCE--EEEEEECCHHCCCCHHHHHHHHHHHHHHHH
Q ss_conf 302431146631888999985520002345468721100012456835--899950810002410356666788899850
Q gi|254780809|r 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY--LVKISDTAGIRETDDIVEKEGIKRTFLEVE 297 (440)
Q Consensus 220 ~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTTRD~i~~~~~i~g~--~~~l~DTaGir~t~d~IE~~GI~ra~~~i~ 297 (440)
+||+++|.++||||||+++++...= ..++.-|.=|.....+.++|. .+.|.||||-.+-.. .......
T Consensus 6 ~KivlvGd~~VGKTsLi~r~~~~~F--~~~y~pTi~~~~~~~~~i~~~~v~l~iwDTaGqe~f~~--------l~~~~y~ 75 (182)
T cd04172 6 CKIVVVGDSQCGKTALLHVFAKDCF--PENYVPTVFENYTASFEIDTQRIELSLWDTSGSPYYDN--------VRPLSYP 75 (182)
T ss_pred EEEEEECCCCCCHHHHHHHHHHCCC--CCCCCCEEEEEEEEEEEECCEEEEEEEEECCCCHHCCC--------CCHHHHC
T ss_conf 8999999999899999999983999--99868735322689999999999999996898620122--------1255512
Q ss_pred HHCCEEECCCCCCHHHHHH------------HCCCCCCCCCCCCCCCCCCCH----------------------H-H---
Q ss_conf 3011020135898566343------------128985322223334465420----------------------0-0---
Q gi|254780809|r 298 NADLILLLKEINSKKEISF------------PKNIDFIFIGTKSDLYSTYTE----------------------E-Y--- 339 (440)
Q Consensus 298 ~aDlil~v~D~~~~~~~~~------------~~~~~~i~V~NK~Dl~~~~~~----------------------~-~--- 339 (440)
.+|.+++|+|.+++..+.. ..+.|+++|.||+||...... . .
T Consensus 76 ~~~~~ilvydit~~~Sf~~v~~~W~~ei~~~~~~~~iiLVGnK~DLr~~~~~~~~l~~~~~~~Vs~eeg~~~A~~~g~~~ 155 (182)
T cd04172 76 DSDAVLICFDISRPETLDSVLKKWKGEIQEFCPNTKMLLVGCKSDLRTDLTTLVELSNHRQTPVSYDQGANMAKQIGAAT 155 (182)
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHCCCCE
T ss_conf 78789999648977889999999999999868799889996171012441456677645677869999999999769979
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHH
Q ss_conf 0013333232-358999999999
Q gi|254780809|r 340 DHLISSFTGE-GLEELINKIKSI 361 (440)
Q Consensus 340 ~~~ISaktg~-Gi~~L~~~I~~~ 361 (440)
-+..||++++ |++++-+...+.
T Consensus 156 y~EtSAk~~~n~V~e~F~~a~~a 178 (182)
T cd04172 156 YIECSALQSENSVRDIFHVATLA 178 (182)
T ss_pred EEECCCCCCCCCHHHHHHHHHHH
T ss_conf 99917078995989999999999
No 190
>PRK05433 GTP-binding protein LepA; Provisional
Probab=99.11 E-value=3.2e-10 Score=90.71 Aligned_cols=140 Identities=23% Similarity=0.320 Sum_probs=95.4
Q ss_pred CEEEECCCCCCHHHHHHHHHCCHHCCCCC---------------CCCCCEEECCCCCCCC-----CEEEEEEECCHHCCC
Q ss_conf 02431146631888999985520002345---------------4687211000124568-----358999508100024
Q gi|254780809|r 221 KIVILGHSNAGKSSLFNALAKKDVAIVTD---------------IPGTTRDVLTIDLDLE-----GYLVKISDTAGIRET 280 (440)
Q Consensus 221 ~v~i~G~pN~GKSSL~N~L~~~~~aIVs~---------------~~GTTRD~i~~~~~i~-----g~~~~l~DTaGir~t 280 (440)
.++|+..-..|||||-.+|+..--.| +. .-|-|--.-...+.|. .+.+.|+||||--+-
T Consensus 9 Nf~IiAHIDhGKSTLaDrlL~~tg~i-~~~~~~~q~lD~m~~ErERGITIka~~v~~~y~~~~g~~y~lNLIDTPGHVDF 87 (601)
T PRK05433 9 NFSIIAHIDHGKSTLADRLIELTGTL-SEREMKAQVLDSMDLERERGITIKAQAVRLNYKAKDGETYQLNLIDTPGHVDF 87 (601)
T ss_pred EEEEEEECCCCHHHHHHHHHHHCCCC-CCCCCHHHCCCCHHHHHHCCCEEEEEEEEEEEECCCCCEEEEEEECCCCCCCC
T ss_conf 58999943788888999999970997-74432333145415576558369786799998848996799998548985664
Q ss_pred CHHHHHHHHHHHHHHHHHHCCEEECCCCCCHHH--------HHHHCCCCCCCCCCCCCCCCCCCH--------------H
Q ss_conf 103566667888998503011020135898566--------343128985322223334465420--------------0
Q gi|254780809|r 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKKE--------ISFPKNIDFIFIGTKSDLYSTYTE--------------E 338 (440)
Q Consensus 281 ~d~IE~~GI~ra~~~i~~aDlil~v~D~~~~~~--------~~~~~~~~~i~V~NK~Dl~~~~~~--------------~ 338 (440)
.-+| +|++.+ +|-.++|+|+++--+ .....+.++|.|+||+|+.....+ +
T Consensus 88 ~~EV-----sRSL~a---ceGalLlVDa~qGVqaQT~an~~~A~~~~L~iIpviNKIDlp~Ad~e~v~~qi~~~igl~~~ 159 (601)
T PRK05433 88 SYEV-----SRSLAA---CEGALLVVDASQGVEAQTLANVYLALENDLEIIPVLNKIDLPAADPERVKQEIEDIIGIDAS 159 (601)
T ss_pred CEEE-----EEEHHH---CCCEEEEEECCCCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHHHCCCHH
T ss_conf 5045-----560334---07259999768785600699999999879965777861468889989999999988689647
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 0001333323235899999999963220358
Q gi|254780809|r 339 YDHLISSFTGEGLEELINKIKSILSNKFKKL 369 (440)
Q Consensus 339 ~~~~ISaktg~Gi~~L~~~I~~~l~~~~~~~ 369 (440)
..+.+|||+|.|+++|+++|.+.++......
T Consensus 160 eil~vSAKtG~GV~~lLdaIV~~iP~P~gd~ 190 (601)
T PRK05433 160 DAVLVSAKTGIGIEEVLEAIVERIPPPKGDP 190 (601)
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHCCCCCCCC
T ss_conf 7777752338887999999997479999998
No 191
>KOG1424 consensus
Probab=99.07 E-value=6.9e-11 Score=95.33 Aligned_cols=65 Identities=31% Similarity=0.411 Sum_probs=53.2
Q ss_pred HHHHHHHHCCCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCCEEECCCCCCCCCEEEEEEECCHHC
Q ss_conf 34554320230243114663188899998552000234546872110001245683589995081000
Q gi|254780809|r 211 KLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278 (440)
Q Consensus 211 ~~~~~l~~g~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTTRD~i~~~~~i~g~~~~l~DTaGir 278 (440)
-.+...++-++|.+||+|||||||++|+|.|.++-=||..||-|+-.-+ +.+.. .+.|+|.||+-
T Consensus 306 ~t~~~~~~~vtVG~VGYPNVGKSSTINaLvG~KkVsVS~TPGkTKHFQT--i~ls~-~v~LCDCPGLV 370 (562)
T KOG1424 306 PTGERYKDVVTVGFVGYPNVGKSSTINALVGRKKVSVSSTPGKTKHFQT--IFLSP-SVCLCDCPGLV 370 (562)
T ss_pred CCCCCCCCEEEEEEECCCCCCHHHHHHHHHCCCEEEEECCCCCCCCEEE--EEECC-CCEECCCCCCC
T ss_conf 7777777605887524888762777888755744666348987640378--97078-76444788721
No 192
>KOG1491 consensus
Probab=99.04 E-value=2.2e-10 Score=91.80 Aligned_cols=94 Identities=26% Similarity=0.373 Sum_probs=73.7
Q ss_pred HCCCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCCEEECCCCCCCC--------------C---EEEEEEECCHHCCC
Q ss_conf 023024311466318889999855200023454687211000124568--------------3---58999508100024
Q gi|254780809|r 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE--------------G---YLVKISDTAGIRET 280 (440)
Q Consensus 218 ~g~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTTRD~i~~~~~i~--------------g---~~~~l~DTaGir~t 280 (440)
...++.|+|.|||||||+||+|++.... +.++|.||-|..++.+.+- + .+++++|.||+-..
T Consensus 19 ~~lkiGIVGlPNvGKST~fnalT~~~a~-~~NfPF~TIdPn~a~V~v~d~Rfd~l~~~Y~~~~~vpa~l~v~DIAGLvkG 97 (391)
T KOG1491 19 NNLKIGIVGLPNVGKSTFFNALTKSKAG-AANFPFCTIDPNEARVEVPDSRFDLLCPIYGPKSKVPAFLTVYDIAGLVKG 97 (391)
T ss_pred CCCEEEEEECCCCCHHHHHHHHHCCCCC-CCCCCCCEECCCCCEEECCCHHHHHHHHHCCCCCEEEEEEEEEEECCCCCC
T ss_conf 7640257517987468899998607988-567874025634112226825889998852876612335789862123567
Q ss_pred CHHHHHHHHHHHHHHHHHHCCEEECCCCCCHHH
Q ss_conf 103566667888998503011020135898566
Q gi|254780809|r 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKKE 313 (440)
Q Consensus 281 ~d~IE~~GI~ra~~~i~~aDlil~v~D~~~~~~ 313 (440)
...=+.+| .+-+..+..+|-++.|+++....+
T Consensus 98 As~G~GLG-N~FLs~iR~vDaifhVVr~f~d~d 129 (391)
T KOG1491 98 ASAGEGLG-NKFLSHIRHVDAIFHVVRAFEDTD 129 (391)
T ss_pred CCCCCCCH-HHHHHHHHHCCCEEEEEEECCCCC
T ss_conf 64576740-777776552031168887417653
No 193
>PRK04004 translation initiation factor IF-2; Validated
Probab=99.03 E-value=1.1e-09 Score=86.95 Aligned_cols=133 Identities=26% Similarity=0.414 Sum_probs=82.8
Q ss_pred HHHCCCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCC-CE---------EECC-----------CCCCCCCEEEEEEEC
Q ss_conf 32023024311466318889999855200023454687-21---------1000-----------124568358999508
Q gi|254780809|r 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGT-TR---------DVLT-----------IDLDLEGYLVKISDT 274 (440)
Q Consensus 216 l~~g~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GT-TR---------D~i~-----------~~~~i~g~~~~l~DT 274 (440)
+|.. -|++.|....||.||+-+|-+.+. +...+|- |- +.++ ..+.+.| +.|+||
T Consensus 3 lR~P-IvtimGHVDhGKTsLLD~iR~t~V--~~~EaGGITQhIGA~~v~~~~~~~~~~~~~~~~~~~~~ipg--llfiDT 77 (592)
T PRK04004 3 LRQP-IVVVLGHVDHGKTTLLDKIRGTAV--AAKEAGGITQHIGATEVPIDVIEKIAGPLVKRLPLKLKIPG--LLFIDT 77 (592)
T ss_pred CCCC-EEEEECCCCCCHHHHHHHHHCCCC--CCCCCCCCCCEECEEEECCCCHHHHCCCCCCCCCCCCCCCC--CEEECC
T ss_conf 8898-899978737776368999862877--35557762323065984123101103443344332345677--557659
Q ss_pred CHHCCCCHHHHHHHHHHHHHHHHHHCCEEECCCCCC---HHHHH-----HHCCCCCCCCCCCCCCCCCCCHH--------
Q ss_conf 100024103566667888998503011020135898---56634-----31289853222233344654200--------
Q gi|254780809|r 275 AGIRETDDIVEKEGIKRTFLEVENADLILLLKEINS---KKEIS-----FPKNIDFIFIGTKSDLYSTYTEE-------- 338 (440)
Q Consensus 275 aGir~t~d~IE~~GI~ra~~~i~~aDlil~v~D~~~---~~~~~-----~~~~~~~i~V~NK~Dl~~~~~~~-------- 338 (440)
||= + ..---|+ .=..-+|++++|+|+.+ ++.++ ...+.|+|+.+||+|..+.|+..
T Consensus 78 PGH-e------aFt~mR~-RGa~vtDiaILVVa~~dGv~pQT~EaI~~~k~~~vP~IVAiNKiDr~~gw~~~~~~~~~~~ 149 (592)
T PRK04004 78 PGH-E------AFSNLRK-RGGALADIAILVVDINEGFQPQTIESLNILKSRKTPFVVAANKIDRIPGWKSVEGAPFLES 149 (592)
T ss_pred CCH-H------HHHHHHH-HCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCCCCCCCHHHH
T ss_conf 965-9------9999997-3674578899999778886762799999999759988999862235666776767411232
Q ss_pred -------------------------------------------HHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf -------------------------------------------00013333232358999999999
Q gi|254780809|r 339 -------------------------------------------YDHLISSFTGEGLEELINKIKSI 361 (440)
Q Consensus 339 -------------------------------------------~~~~ISaktg~Gi~~L~~~I~~~ 361 (440)
..+.+||+||+||++|+..|..+
T Consensus 150 ~~~q~~~v~~~l~~~~~~vi~~l~e~G~~~e~~~~~~d~g~~v~~VpvSA~tGeGi~dLL~~i~~L 215 (592)
T PRK04004 150 FKKQSERVQAELEEKLYELIGELYELGFSADRFDRVSDFTKTVAIVPVSAKTGEGIPDLLMVLAGL 215 (592)
T ss_pred HHHCCHHHHHHHHHHHHHHHHHHHHCCCCHHHCCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHHH
T ss_conf 231738899999888888889998728763221454345881489978205689989999999999
No 194
>cd01873 RhoBTB RhoBTB subfamily. Members of the RhoBTB subfamily of Rho GTPases are present in vertebrates, Drosophila, and Dictyostelium. RhoBTB proteins are characterized by a modular organization, consisting of a GTPase domain, a proline rich region, a tandem of two BTB (Broad-Complex, Tramtrack, and Bric a brac) domains, and a C-terminal region of unknown function. RhoBTB proteins may act as docking points for multiple components participating in signal transduction cascades. RhoBTB genes appeared upregulated in some cancer cell lines, suggesting a participation of RhoBTB proteins in the pathogenesis of particular tumors. Note that the Dictyostelium RacA GTPase domain is more closely related to Rac proteins than to RhoBTB proteins, where RacA actually belongs. Thus, the Dictyostelium RacA is not included here. Most Rho proteins contain a lipid modification site at the C-terminus; however, RhoBTB is one of few Rho subfamilies that lack this feature.
Probab=99.02 E-value=9e-10 Score=87.61 Aligned_cols=131 Identities=26% Similarity=0.325 Sum_probs=79.5
Q ss_pred CCCEEEECCCCCCHHHHHHHHHCCH-----HCCCCCCCCCCE--E-------ECC-CCCCCCC--EEEEEEECCHHCCCC
Q ss_conf 2302431146631888999985520-----002345468721--1-------000-1245683--589995081000241
Q gi|254780809|r 219 GYKIVILGHSNAGKSSLFNALAKKD-----VAIVTDIPGTTR--D-------VLT-IDLDLEG--YLVKISDTAGIRETD 281 (440)
Q Consensus 219 g~~v~i~G~pN~GKSSL~N~L~~~~-----~aIVs~~~GTTR--D-------~i~-~~~~i~g--~~~~l~DTaGir~t~ 281 (440)
-+||+++|-++||||||+.+..-.+ ..-.+.+| |+- | ... ....++| +.+.|.||||= .
T Consensus 2 t~KiVlvGDs~VGKTsLl~~~~~n~~~~~~~~~~~~~p-Tv~~~~~~~~~~~~~~~~~~~vdg~~v~L~iWDTAG~---~ 77 (195)
T cd01873 2 TIKCVVVGDNAVGKTRLICARACNKTLTQYQLLATHVP-TVWAIDQYRVCQEVLERSRDVVDGVSVSLRLWDTFGD---H 77 (195)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCC-CCCCCCCCEEEEEECCCCEEEECCEEEEEEEEECCCC---H
T ss_conf 77999987899898999977874787655656667588-6633333134444302211421895999999978996---2
Q ss_pred HHHHHHHHHHHHHHHHHHCCEEECCCCCCHHHHH--------H----HCCCCCCCCCCCCCCCCCCC-------------
Q ss_conf 0356666788899850301102013589856634--------3----12898532222333446542-------------
Q gi|254780809|r 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEIS--------F----PKNIDFIFIGTKSDLYSTYT------------- 336 (440)
Q Consensus 282 d~IE~~GI~ra~~~i~~aDlil~v~D~~~~~~~~--------~----~~~~~~i~V~NK~Dl~~~~~------------- 336 (440)
|+. |.. .-..+|++++++|.+++..+. . ..+.|+++|.||+||.....
T Consensus 78 ---~~~---r~~-~y~~~~~~ll~fdv~~~~Sf~~v~~~W~~ei~~~~~~~piiLVG~K~DLr~~~~~~~~~~~~~~~~~ 150 (195)
T cd01873 78 ---DKD---RRF-AYGRSDVVLLCFSIASPNSLRNVKTMWYPEIRHFCPRVPVILVGCKLDLRYADLDEVNRARRPLARP 150 (195)
T ss_pred ---HHC---CCC-CCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECHHHCCCCCHHHHHHHHCCCCC
T ss_conf ---001---214-3568889999996698014899999999999986899988999637575446302455543001365
Q ss_pred --HH-----------------HHHHHHHHHHHHHHHHHHHHHH
Q ss_conf --00-----------------0001333323235899999999
Q gi|254780809|r 337 --EE-----------------YDHLISSFTGEGLEELINKIKS 360 (440)
Q Consensus 337 --~~-----------------~~~~ISaktg~Gi~~L~~~I~~ 360 (440)
.. .-+..||+||+|++++-+...+
T Consensus 151 ~~~~~~v~~ee~~~~A~~~g~~y~EtSAkt~~gV~e~F~~air 193 (195)
T cd01873 151 IKNADILPPETGRAVAKELGIPYYETSVVTQFGVKDVFDNAIR 193 (195)
T ss_pred CCCCCCCCHHHHHHHHHHHCCEEEECCCCCCCCHHHHHHHHHH
T ss_conf 5435767899999999982998998284879897999999998
No 195
>pfam00350 Dynamin_N Dynamin family.
Probab=99.01 E-value=7.5e-10 Score=88.16 Aligned_cols=103 Identities=31% Similarity=0.303 Sum_probs=67.2
Q ss_pred EEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCCEEECCCCC---------------------------------------
Q ss_conf 24311466318889999855200023454687211000124---------------------------------------
Q gi|254780809|r 222 IVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDL--------------------------------------- 262 (440)
Q Consensus 222 v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTTRD~i~~~~--------------------------------------- 262 (440)
|+++|..++|||||+|+|+|.+..-++..| |||=+++..+
T Consensus 1 ivvvG~~ssGKSSliNALlG~~ilP~~~~~-~T~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 79 (168)
T pfam00350 1 IAVVGDQSAGKSSVLNALLGRDILPRGPGP-TTRRPLVLRLGEEPGAIPGAVKVEYKDGLKKFEDFSELREEIEDETDKI 79 (168)
T ss_pred CEEECCCCCCHHHHHHHHHCCCCCCCCCCC-CCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 989917889899999999788736889976-5167189995788765554121112333001488999999999755431
Q ss_pred -----------------CCCCEEEEEEECCHHCCCCHHHHHHHHHHHHHHHHHHCCEEECCCCCCHH---HHHH------
Q ss_conf -----------------56835899950810002410356666788899850301102013589856---6343------
Q gi|254780809|r 263 -----------------DLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK---EISF------ 316 (440)
Q Consensus 263 -----------------~i~g~~~~l~DTaGir~t~d~IE~~GI~ra~~~i~~aDlil~v~D~~~~~---~~~~------ 316 (440)
......+.|+||||+-.+...- -+.+.+.+..+|++|||++++... +..+
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~l~lvDtPGl~s~~~~~----~~~t~~~i~~~d~il~V~~a~~~~~~~~~~~l~~~~d 155 (168)
T pfam00350 80 SGTGKGISSEPIILEILSPLVPGLTLVDTPGLDSVAVGD----QDLTEEYIKPADIILAVVDANHDLSTSEALFLAREVD 155 (168)
T ss_pred CCCCCCCCCCEEEEEECCCCCCCEEEEECCCCCCCCCCC----HHHHHHHHHHCCEEEEEEECCCCHHHHHHHHHHHHHC
T ss_conf 345778777108998368888881898279865444336----9999999853866999984695166619999999739
Q ss_pred HCCCCCCCCCCCC
Q ss_conf 1289853222233
Q gi|254780809|r 317 PKNIDFIFIGTKS 329 (440)
Q Consensus 317 ~~~~~~i~V~NK~ 329 (440)
..+...+.|+||.
T Consensus 156 ~~~~r~i~V~tk~ 168 (168)
T pfam00350 156 PNGKRTIGVLTKD 168 (168)
T ss_pred CCCCEEEEEECCC
T ss_conf 9998389998188
No 196
>pfam08477 Miro Miro-like protein. Mitochondrial Rho proteins (Miro-1 and Miro-2), are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (pfam00036), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis.
Probab=99.01 E-value=1.2e-09 Score=86.85 Aligned_cols=102 Identities=31% Similarity=0.491 Sum_probs=69.3
Q ss_pred CEEEECCCCCCHHHHHHHHHCCHHC--CCCCCCCCCEEECCCCCCCCCEEEEEEECCHHCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 0243114663188899998552000--23454687211000124568358999508100024103566667888998503
Q gi|254780809|r 221 KIVILGHSNAGKSSLFNALAKKDVA--IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298 (440)
Q Consensus 221 ~v~i~G~pN~GKSSL~N~L~~~~~a--IVs~~~GTTRD~i~~~~~i~g~~~~l~DTaGir~t~d~IE~~GI~ra~~~i~~ 298 (440)
||+++|.++||||||+.++++.+-. .-+...+.+.......+.-....+.+.||||-.+.. ......+..
T Consensus 1 KivvvG~~~vGKTSLi~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~--------~~~~~~~~~ 72 (118)
T pfam08477 1 KVVVIGDKGSGKSSLLSQLVGGEFPPEIPEEIQGDTLAVDTLEVDGDTELLHIWDFGGREELK--------FEHIIFMKT 72 (118)
T ss_pred CEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEEEECCCEEEEEEEECCCCHHHH--------HHHHHHCCC
T ss_conf 999999899789999999983988876667877776888999999928999999899967776--------666542258
Q ss_pred HCCEEECCCCCCHHHHH----------H----HCCCCCCCCCCCCC
Q ss_conf 01102013589856634----------3----12898532222333
Q gi|254780809|r 299 ADLILLLKEINSKKEIS----------F----PKNIDFIFIGTKSD 330 (440)
Q Consensus 299 aDlil~v~D~~~~~~~~----------~----~~~~~~i~V~NK~D 330 (440)
||.+++|+|.+++..+. . ..+.|+++|.||+|
T Consensus 73 ~d~~ilvydit~~~Sf~~~~~~~~~i~~~~~~~~~~piilVGnK~D 118 (118)
T pfam08477 73 ADAILLVYDLTDRESLNRVSRLIAWLPHLRKLGKKIPVILVGNKFD 118 (118)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCC
T ss_conf 7467899979987899999999999999982099998899996859
No 197
>KOG0462 consensus
Probab=99.00 E-value=5.7e-10 Score=88.95 Aligned_cols=144 Identities=25% Similarity=0.263 Sum_probs=103.4
Q ss_pred CEEEECCCCCCHHHHHHHHHCCHHCC--------------CCCCCCCCEEECCCCCCCCC---EEEEEEECCHHCCCCHH
Q ss_conf 02431146631888999985520002--------------34546872110001245683---58999508100024103
Q gi|254780809|r 221 KIVILGHSNAGKSSLFNALAKKDVAI--------------VTDIPGTTRDVLTIDLDLEG---YLVKISDTAGIRETDDI 283 (440)
Q Consensus 221 ~v~i~G~pN~GKSSL~N~L~~~~~aI--------------Vs~~~GTTRD~i~~~~~i~g---~~~~l~DTaGir~t~d~ 283 (440)
.++|+-...-|||||..+|+..--+| |-..-|-|--.-...+.+.+ +.+.|+||||--+-..+
T Consensus 62 NfsIIAHVDHGKSTLaDrLLe~tg~i~~~~~q~q~LDkl~vERERGITIkaQtasify~~~~~ylLNLIDTPGHvDFs~E 141 (650)
T KOG0462 62 NFSIIAHVDHGKSTLADRLLELTGTIDNNIGQEQVLDKLQVERERGITIKAQTASIFYKDGQSYLLNLIDTPGHVDFSGE 141 (650)
T ss_pred CEEEEEEECCCCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEEEEEEECCCCEEEEEECCCCCCCCCCE
T ss_conf 13799984277016899999982877888755664245445665284787512379997587328875058985555410
Q ss_pred HHHHHHHHHHHHHHHHCCEEECCCCCCHH--------HHHHHCCCCCCCCCCCCCCCCCCCHH--------------HHH
Q ss_conf 56666788899850301102013589856--------63431289853222233344654200--------------000
Q gi|254780809|r 284 VEKEGIKRTFLEVENADLILLLKEINSKK--------EISFPKNIDFIFIGTKSDLYSTYTEE--------------YDH 341 (440)
Q Consensus 284 IE~~GI~ra~~~i~~aDlil~v~D~~~~~--------~~~~~~~~~~i~V~NK~Dl~~~~~~~--------------~~~ 341 (440)
|+ |++ .-+|-+|+|+|+++.. ...+..+..+|.|+||+|+.....+. ..+
T Consensus 142 Vs-----Rsl---aac~G~lLvVDA~qGvqAQT~anf~lAfe~~L~iIpVlNKIDlp~adpe~V~~q~~~lF~~~~~~~i 213 (650)
T KOG0462 142 VS-----RSL---AACDGALLVVDASQGVQAQTVANFYLAFEAGLAIIPVLNKIDLPSADPERVENQLFELFDIPPAEVI 213 (650)
T ss_pred EH-----EHH---HHCCCEEEEEECCCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCCEE
T ss_conf 00-----126---5357159999767681288999999999859748886531578988989999999998668961248
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 1333323235899999999963220358863
Q gi|254780809|r 342 LISSFTGEGLEELINKIKSILSNKFKKLPFS 372 (440)
Q Consensus 342 ~ISaktg~Gi~~L~~~I~~~l~~~~~~~~~~ 372 (440)
++|||+|.|+++++++|.+.+.......+..
T Consensus 214 ~vSAK~G~~v~~lL~AII~rVPpP~~~~d~p 244 (650)
T KOG0462 214 YVSAKTGLNVEELLEAIIRRVPPPKGIRDAP 244 (650)
T ss_pred EEEECCCCCHHHHHHHHHHHCCCCCCCCCCC
T ss_conf 8870257568889999996379998888851
No 198
>cd01884 EF_Tu EF-Tu subfamily. This subfamily includes orthologs of translation elongation factor EF-Tu in bacteria, mitochondria, and chloroplasts. It is one of several GTP-binding translation factors found in the larger family of GTP-binding elongation factors. The eukaryotic counterpart, eukaryotic translation elongation factor 1 (eEF-1 alpha), is excluded from this family. EF-Tu is one of the most abundant proteins in bacteria, as well as, one of the most highly conserved, and in a number of species the gene is duplicated with identical function. When bound to GTP, EF-Tu can form a complex with any (correctly) aminoacylated tRNA except those for initiation and for selenocysteine, in which case EF-Tu is replaced by other factors. Transfer RNA is carried to the ribosome in these complexes for protein translation.
Probab=98.99 E-value=1.5e-09 Score=86.11 Aligned_cols=106 Identities=16% Similarity=0.199 Sum_probs=68.1
Q ss_pred CCEEEECCCCCCHHHHHHHHHCCHH-----------CCCC----CCCCCCEEECCCCCCCCCEEEEEEECCHHCCCCHHH
Q ss_conf 3024311466318889999855200-----------0234----546872110001245683589995081000241035
Q gi|254780809|r 220 YKIVILGHSNAGKSSLFNALAKKDV-----------AIVT----DIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIV 284 (440)
Q Consensus 220 ~~v~i~G~pN~GKSSL~N~L~~~~~-----------aIVs----~~~GTTRD~i~~~~~i~g~~~~l~DTaGir~t~d~I 284 (440)
++|+++|...+|||||..+|++.-. .+=+ -..|-|-+.-...+.+.+..+.++||||-++-.
T Consensus 3 ~Ni~iiGHVDhGKTTL~~~l~~~~~~~~~~~~~~~~~~D~~~~EreRGiTI~~~~~~~~~~~~~~~~IDtPGH~dF~--- 79 (195)
T cd01884 3 VNVGTIGHVDHGKTTLTAAITKVLAKKGGAKFKKYDEIDKAPEEKARGITINTAHVEYETANRHYAHVDCPGHADYI--- 79 (195)
T ss_pred EEEEEEEECCCCHHHHHHHHHHHHHHHCCCCCCCCHHCCCCHHHHCCCCCCCCEEEEEECCCEEEEECCCCCHHHHH---
T ss_conf 79999960588698999999998866344441120010054666505886144189996088169962689607788---
Q ss_pred HHHHHHHHHHHHHHHCCEEECCCCCCHHH--------HHHHCCCC-CCCCCCCCCCCC
Q ss_conf 66667888998503011020135898566--------34312898-532222333446
Q gi|254780809|r 285 EKEGIKRTFLEVENADLILLLKEINSKKE--------ISFPKNID-FIFIGTKSDLYS 333 (440)
Q Consensus 285 E~~GI~ra~~~i~~aDlil~v~D~~~~~~--------~~~~~~~~-~i~V~NK~Dl~~ 333 (440)
......+..+|..++|+|+.+... +....+.+ +++++||+|+.+
T Consensus 80 -----~~~i~g~~~~D~aiLVVdA~eGv~~QT~eh~~la~~lgi~~iiV~iNK~D~~~ 132 (195)
T cd01884 80 -----KNMITGAAQMDGAILVVSATDGPMPQTREHLLLARQVGVPYIVVFLNKADMVD 132 (195)
T ss_pred -----HHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCC
T ss_conf -----89986351136268998527787478999999999809996279996877898
No 199
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=98.97 E-value=1.5e-09 Score=85.97 Aligned_cols=122 Identities=18% Similarity=0.238 Sum_probs=84.7
Q ss_pred HHHCCCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCCEEECCCCCCCCCEEEEEEECCHHCCCC--HHHHHHHHHHHH
Q ss_conf 320230243114663188899998552000234546872110001245683589995081000241--035666678889
Q gi|254780809|r 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD--DIVEKEGIKRTF 293 (440)
Q Consensus 216 l~~g~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTTRD~i~~~~~i~g~~~~l~DTaGir~t~--d~IE~~GI~ra~ 293 (440)
+..-.+|.+.|+.-|||||.+|.++|+.++.|+..--+|.-+.+..-..+|+.++++||||+.++. ..+.+..+...+
T Consensus 28 ~~~sltILvlGKtGVGKSsTINSifgE~~~~~~aF~~~t~r~~~v~~tv~G~kl~iIDTPGL~~~~~~~~~N~k~l~~iK 107 (249)
T cd01853 28 LDFSLTILVLGKTGVGKSSTINSIFGERKAATSAFQSETLRVREVSGTVDGFKLNIIDTPGLLESVMDQRVNRKILSSIK 107 (249)
T ss_pred CCCEEEEEEEECCCCCHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEEEECCEEEEEECCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 56436999980687645776776508541344776778865089987533448998608987766542213099999999
Q ss_pred HHHHH--HCCEEECC--CCC-----CHHHHHHHC---C----CCCCCCCCCCCCCCCCCH
Q ss_conf 98503--01102013--589-----856634312---8----985322223334465420
Q gi|254780809|r 294 LEVEN--ADLILLLK--EIN-----SKKEISFPK---N----IDFIFIGTKSDLYSTYTE 337 (440)
Q Consensus 294 ~~i~~--aDlil~v~--D~~-----~~~~~~~~~---~----~~~i~V~NK~Dl~~~~~~ 337 (440)
+.+.. -|++|||- |.. +..-+..+. + .+.|+|++.+-..++...
T Consensus 108 r~l~~~~~DvvLYvDRLD~~r~d~~D~~ll~~iT~~fG~~IW~naivvLTHa~~~pPdg~ 167 (249)
T cd01853 108 RYLKKKTPDVVLYVDRLDMYRRDYLDLPLLRAITDSFGPSIWRNAIVVLTHAASSPPDGL 167 (249)
T ss_pred HHHCCCCCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHEEEECCCCCCCCCC
T ss_conf 996289997899984576624586428999999987678887545403534664899998
No 200
>TIGR00650 MG442 GTP-binding conserved hypothetical protein; InterPro: IPR005289 This is a GTP-binding domain, that was found in proteins from various families (Ras GTPase superfamily, HSR1-related GTP-binding protein), which perform different functions.; GO: 0005525 GTP binding.
Probab=98.95 E-value=3.5e-10 Score=90.47 Aligned_cols=52 Identities=37% Similarity=0.403 Sum_probs=42.9
Q ss_pred ECCCCCCHH-------------HHHHHHHCC------------------------------HHCCCCCCCCCCE------
Q ss_conf 114663188-------------899998552------------------------------0002345468721------
Q gi|254780809|r 225 LGHSNAGKS-------------SLFNALAKK------------------------------DVAIVTDIPGTTR------ 255 (440)
Q Consensus 225 ~G~pN~GKS-------------SL~N~L~~~------------------------------~~aIVs~~~GTTR------ 255 (440)
+|.|||||| ||||+|+++ +.|.|+|.||+||
T Consensus 1 ~G~PNVGKSkieYktaievaaGsliN~L~~kr~d~avRaikYLkeRkLGRatFLPLDRieG~~a~~~~~aG~T~RaiDLv 80 (123)
T TIGR00650 1 IGVPNVGKSKIEYKTAIEVAAGSLINLLLNKRMDDAVRAIKYLKERKLGRATFLPLDRIEGNEAKVADRAGVTGRAIDLV 80 (123)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCEECCCCCCCCCCEEEECCCCCCCCEEEEEE
T ss_conf 98689876421023455677788999986212342788888765202452001644212574666517898400013333
Q ss_pred ----------------------EECCCCCCCCCEEEEEEECCH
Q ss_conf ----------------------100012456835899950810
Q gi|254780809|r 256 ----------------------DVLTIDLDLEGYLVKISDTAG 276 (440)
Q Consensus 256 ----------------------D~i~~~~~i~g~~~~l~DTaG 276 (440)
|..+..+..-+.++.|+||||
T Consensus 81 eFDekYRRvFeYvFGntvvven~~~~~~~~ki~~~l~l~D~pG 123 (123)
T TIGR00650 81 EFDEKYRRVFEYVFGNTVVVENIDKSLQLIKISDELRLVDTPG 123 (123)
T ss_pred ECCCCCEEEEEEEECCEEEEECCHHCEEEEEECCCEEEEECCC
T ss_conf 1022101344454066589721012002343257179885689
No 201
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=98.94 E-value=8.5e-09 Score=80.83 Aligned_cols=196 Identities=23% Similarity=0.247 Sum_probs=108.4
Q ss_pred CCEEEECCCCCCHHHHHHHHHCC------HHCCCCCCCC----------------------------------------C
Q ss_conf 30243114663188899998552------0002345468----------------------------------------7
Q gi|254780809|r 220 YKIVILGHSNAGKSSLFNALAKK------DVAIVTDIPG----------------------------------------T 253 (440)
Q Consensus 220 ~~v~i~G~pN~GKSSL~N~L~~~------~~aIVs~~~G----------------------------------------T 253 (440)
.+|.|.|.|-||||||+-+|..+ ..|+++==|. -
T Consensus 52 ~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDRiRM~~~~~~~~vFiRs~~srG~lGGlS~a 131 (323)
T COG1703 52 HVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDRIRMQRLAVDPGVFIRSSPSRGTLGGLSRA 131 (323)
T ss_pred CEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCCCCHHHHHHHCCCCCEEEEECCCCCCCHHHHHH
T ss_conf 37873179988668899999999997796789999889999878530120766776446998178426877651016688
Q ss_pred CEEECCCCCCCCCEEEEEEECCHHCCCCHHHHHHHHHHHHHHHHHHCCEEECCCCCCHHHHHHHCC----CCCCCCCCCC
Q ss_conf 211000124568358999508100024103566667888998503011020135898566343128----9853222233
Q gi|254780809|r 254 TRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKN----IDFIFIGTKS 329 (440)
Q Consensus 254 TRD~i~~~~~i~g~~~~l~DTaGir~t~d~IE~~GI~ra~~~i~~aDlil~v~D~~~~~~~~~~~~----~~~i~V~NK~ 329 (440)
|||.+.. ++=.|+.+.++-|.|+.+++-.| ..-+|.+++|.=+..-++++..|. .--|+|+||.
T Consensus 132 t~~~i~~-ldAaG~DvIIVETVGvGQsev~I-----------~~~aDt~~~v~~pg~GD~~Q~iK~GimEiaDi~vINKa 199 (323)
T COG1703 132 TREAIKL-LDAAGYDVIIVETVGVGQSEVDI-----------ANMADTFLVVMIPGAGDDLQGIKAGIMEIADIIVINKA 199 (323)
T ss_pred HHHHHHH-HHHCCCCEEEEEECCCCCCHHHH-----------HHHCCEEEEEECCCCCCHHHHHHHHHHHHHHEEEEECC
T ss_conf 9999999-98618988999814788415577-----------65216689996578882788887414654033567256
Q ss_pred CCCCCCC---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEHHHHHHHHHHHHHH
Q ss_conf 3446542---------------------0000013333232358999999999632203588632014899999999999
Q gi|254780809|r 330 DLYSTYT---------------------EEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVR 388 (440)
Q Consensus 330 Dl~~~~~---------------------~~~~~~ISaktg~Gi~~L~~~I~~~l~~~~~~~~~~i~~~~Rq~~~L~~a~~ 388 (440)
|...... ..+.+-+||.+|+|+++|.++|.+.......+. .....|..+..+....
T Consensus 200 D~~~A~~a~r~l~~al~~~~~~~~~~~W~ppv~~t~A~~g~Gi~~L~~ai~~h~~~~~~sg---~~~~~rr~q~~~~~~~ 276 (323)
T COG1703 200 DRKGAEKAARELRSALDLLREVWRENGWRPPVVTTSALEGEGIDELWDAIEDHRKFLTESG---LFTEKRRTQYVEWIRT 276 (323)
T ss_pred CHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHCC---CCCCCHHHHHHHHHHH
T ss_conf 7265899999999999751145423688886467641357787999999999999998555---6321048899999999
Q ss_pred HHHH--HHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHC
Q ss_conf 9999--9753279980146599999998635671853115874167650
Q gi|254780809|r 389 YLEM--ASLNEKDCGLDIIAENLRLASVSLGKITGCVDVEQLLDIIFSK 435 (440)
Q Consensus 389 ~L~~--~~~~~~~~~~EliAeeLr~A~~~L~eItG~~~~EdiLd~IFs~ 435 (440)
.+.. ......+........++-.+. ..|+.+.--.-+++|..
T Consensus 277 ~v~~~v~~~~~~~~~~k~~~~~~~~~v-----~~~e~~p~~aa~~ll~~ 320 (323)
T COG1703 277 LVRDEVLDRLEANPAVKKVYADLEAAV-----RKGELDPYTAAQQLLEA 320 (323)
T ss_pred HHHHHHHHHHHCCHHHHHHHHHHHHHH-----HHCCCCHHHHHHHHHHH
T ss_conf 999999999971613666667899999-----81888867899998887
No 202
>COG1100 GTPase SAR1 and related small G proteins [General function prediction only]
Probab=98.94 E-value=3.4e-09 Score=83.56 Aligned_cols=103 Identities=24% Similarity=0.339 Sum_probs=72.9
Q ss_pred CCEEEECCCCCCHHHHHHHHHCCHH------CCCCCCCCCCEEECCCCCCCCCEEEEEEECCHHCCCCHHHHHHHHHHHH
Q ss_conf 3024311466318889999855200------0234546872110001245683589995081000241035666678889
Q gi|254780809|r 220 YKIVILGHSNAGKSSLFNALAKKDV------AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTF 293 (440)
Q Consensus 220 ~~v~i~G~pN~GKSSL~N~L~~~~~------aIVs~~~GTTRD~i~~~~~i~g~~~~l~DTaGir~t~d~IE~~GI~ra~ 293 (440)
++++++|.+|||||||+|+|.+..- .++++.|++++..... .+.+.+.||||..+-. ....
T Consensus 6 ~kivv~G~~g~GKTtl~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~-----~~~~~~~Dt~gq~~~~--------~~~~ 72 (219)
T COG1100 6 FKIVVLGDGGVGKTTLLNRLVGDEFPEGYPPTIGNLDPAKTIEPYRR-----NIKLQLWDTAGQEEYR--------SLRP 72 (219)
T ss_pred EEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEECCCCCEEECCCC-----CEEEEEEECCCHHHHH--------HHHH
T ss_conf 79999999999889999999647676556761454043203622666-----0026767679869999--------9887
Q ss_pred HHHHHHCCEEECCCCCCHH--------HH---HHHC--CCCCCCCCCCCCCCCCC
Q ss_conf 9850301102013589856--------63---4312--89853222233344654
Q gi|254780809|r 294 LEVENADLILLLKEINSKK--------EI---SFPK--NIDFIFIGTKSDLYSTY 335 (440)
Q Consensus 294 ~~i~~aDlil~v~D~~~~~--------~~---~~~~--~~~~i~V~NK~Dl~~~~ 335 (440)
.....++.+++++|..... +. .... ..++++|.||+|+....
T Consensus 73 ~y~~~~~~~l~~~d~~~~~~~~~~~~~~~~~l~~~~~~~~~iilv~nK~Dl~~~~ 127 (219)
T COG1100 73 EYYRGANGILIVYDSTLRESSDELTEEWLEELRELAPDDVPILLVGNKIDLFDEQ 127 (219)
T ss_pred HCCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCCCH
T ss_conf 5043897899999762056578899999999987466886799969761055430
No 203
>cd04168 TetM_like Tet(M)-like subfamily. Tet(M), Tet(O), Tet(W), and OtrA are tetracycline resistance genes found in Gram-positive and Gram-negative bacteria. Tetracyclines inhibit protein synthesis by preventing aminoacyl-tRNA from binding to the ribosomal acceptor site. This subfamily contains tetracycline resistance proteins that function through ribosomal protection and are typically found on mobile genetic elements, such as transposons or plasmids, and are often conjugative. Ribosomal protection proteins are homologous to the elongation factors EF-Tu and EF-G. EF-G and Tet(M) compete for binding on the ribosomes. Tet(M) has a higher affinity than EF-G, suggesting these two proteins may have overlapping binding sites and that Tet(M) must be released before EF-G can bind. Tet(M) and Tet(O) have been shown to have ribosome-dependent GTPase activity. These proteins are part of the GTP translation factor family, which includes EF-G, EF-Tu, EF2, LepA, and SelB.
Probab=98.94 E-value=2.2e-08 Score=77.99 Aligned_cols=104 Identities=27% Similarity=0.239 Sum_probs=71.8
Q ss_pred CEEEECCCCCCHHHHHHHHHCCHHCCCCCCC-----CCCE-EEC-------------CCCCCCCCEEEEEEECCHHCCCC
Q ss_conf 0243114663188899998552000234546-----8721-100-------------01245683589995081000241
Q gi|254780809|r 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIP-----GTTR-DVL-------------TIDLDLEGYLVKISDTAGIRETD 281 (440)
Q Consensus 221 ~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~-----GTTR-D~i-------------~~~~~i~g~~~~l~DTaGir~t~ 281 (440)
.|+|+|...+||+||.-+|+-.-.+| +.+ |||. |+- -..+.|+|.++.|+||||.-+-.
T Consensus 1 Niai~gH~~~GKTtL~e~lL~~~g~i--~r~G~v~~g~t~~D~~~eE~~r~isi~~~~~~~~~~~~~~n~iDtPG~~dF~ 78 (237)
T cd04168 1 NIGILAHVDAGKTTLTESLLYTSGAI--RKLGSVDKGTTRTDTMELERQRGITIFSAVASFQWEDTKVNLIDTPGHMDFI 78 (237)
T ss_pred CEEEECCCCCCHHHHHHHHHHHCCHH--HHCCCEECCCCCCCCHHHHHHHCCEEEEEEEEEEECCEEEEEEECCCCHHHH
T ss_conf 98999389989999999999965712--2266330683037854998984870310589999899879998898846566
Q ss_pred HHHHHHHHHHHHHHHHHHCCEEECCCCCCHHH--------HHHHCCCCCCCCCCCCCCCCC
Q ss_conf 03566667888998503011020135898566--------343128985322223334465
Q gi|254780809|r 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKE--------ISFPKNIDFIFIGTKSDLYST 334 (440)
Q Consensus 282 d~IE~~GI~ra~~~i~~aDlil~v~D~~~~~~--------~~~~~~~~~i~V~NK~Dl~~~ 334 (440)
. .+...+.-+|..++|+|+.+... .....++|.++++||+|....
T Consensus 79 ~--------e~~~al~~~D~av~Vv~a~~Gv~~~t~~~~~~~~~~~~P~iifiNKmDre~a 131 (237)
T cd04168 79 A--------EVERSLSVLDGAILVISAVEGVQAQTRILWRLLRKLNIPTIIFVNKIDRAGA 131 (237)
T ss_pred H--------HHHHHHHHCCCEEEEEECCCCCCCCHHHHHHHHHHCCCCEEEEEECCCCCCC
T ss_conf 6--------8988976348169999658882234499999999859985998624457899
No 204
>KOG0078 consensus
Probab=98.93 E-value=7.1e-09 Score=81.36 Aligned_cols=139 Identities=23% Similarity=0.207 Sum_probs=96.1
Q ss_pred HHHHCCCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCC--EEECCCCCCCCCE--EEEEEECCHHCCCCHHHHHHHHH
Q ss_conf 4320230243114663188899998552000234546872--1100012456835--89995081000241035666678
Q gi|254780809|r 215 IIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT--RDVLTIDLDLEGY--LVKISDTAGIRETDDIVEKEGIK 290 (440)
Q Consensus 215 ~l~~g~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTT--RD~i~~~~~i~g~--~~~l~DTaGir~t~d~IE~~GI~ 290 (440)
..-..++|+++|.++||||+++-++....-. +-.-+| -|.--..+.++|. ..++.||||- |+ +-.
T Consensus 8 ~~d~~~kvlliGDs~vGKt~~l~rf~d~~f~---~~~~sTiGIDFk~kti~l~g~~i~lQiWDtaGQ-------er-f~t 76 (207)
T KOG0078 8 DYDYLFKLLLIGDSGVGKTCLLLRFSDDSFN---TSFISTIGIDFKIKTIELDGKKIKLQIWDTAGQ-------ER-FRT 76 (207)
T ss_pred CCCEEEEEEEECCCCCCHHHHHHHHHHCCCC---CCCCCEEEEEEEEEEEEECCEEEEEEEEECCCC-------HH-HHH
T ss_conf 8451899999778987655766654406676---776515878878889983890899999972430-------56-788
Q ss_pred HHHHHHHHHCCEEECCCCCCHHHHH-------HH-----CCCCCCCCCCCCCCCCCCCHH-------------HHHHHHH
Q ss_conf 8899850301102013589856634-------31-----289853222233344654200-------------0001333
Q gi|254780809|r 291 RTFLEVENADLILLLKEINSKKEIS-------FP-----KNIDFIFIGTKSDLYSTYTEE-------------YDHLISS 345 (440)
Q Consensus 291 ra~~~i~~aDlil~v~D~~~~~~~~-------~~-----~~~~~i~V~NK~Dl~~~~~~~-------------~~~~ISa 345 (440)
.+......|+-+++|+|.++..... .. .+.+.++|.||+|+-.+.... ..+.+||
T Consensus 77 i~~sYyrgA~gi~LvyDitne~Sfeni~~W~~~I~e~a~~~v~~~LvGNK~D~~~~R~V~~e~ge~lA~e~G~~F~EtSA 156 (207)
T KOG0078 77 ITTAYYRGAMGILLVYDITNEKSFENIRNWIKNIDEHASDDVVKILVGNKCDLEEKRQVSKERGEALAREYGIKFFETSA 156 (207)
T ss_pred HHHHHHHHCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHCCEEEECCC
T ss_conf 99999865482499998452577777999999998637888748985114121013335679999999984982797133
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q ss_conf 3232358999999999632
Q gi|254780809|r 346 FTGEGLEELINKIKSILSN 364 (440)
Q Consensus 346 ktg~Gi~~L~~~I~~~l~~ 364 (440)
|+|.+|++..-.+...+..
T Consensus 157 k~~~NI~eaF~~La~~i~~ 175 (207)
T KOG0078 157 KTNFNIEEAFLSLARDILQ 175 (207)
T ss_pred CCCCCHHHHHHHHHHHHHH
T ss_conf 6799889999999999986
No 205
>KOG2484 consensus
Probab=98.91 E-value=5.8e-10 Score=88.91 Aligned_cols=74 Identities=24% Similarity=0.439 Sum_probs=60.7
Q ss_pred HHHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCCEEECCCCCCCCCEEEEEEECCHHC
Q ss_conf 12123332234554320230243114663188899998552000234546872110001245683589995081000
Q gi|254780809|r 202 DISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278 (440)
Q Consensus 202 ~l~~ll~~~~~~~~l~~g~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTTRD~i~~~~~i~g~~~~l~DTaGir 278 (440)
.+-.++.++.++..++.-++|.|+|.|||||||++|.|..+...-|.+.||-||-.-+..+ +..+.|+|.||+-
T Consensus 235 ~l~~~lgny~~~~~lk~sIrvGViG~PNVGKSSvINsL~~~k~C~vg~~pGvT~smqeV~L---dk~i~llDsPgiv 308 (435)
T KOG2484 235 TLMKVLGNYCRKGELKTSIRVGIIGYPNVGKSSVINSLKRRKACNVGNVPGVTRSMQEVKL---DKKIRLLDSPGIV 308 (435)
T ss_pred HHHHHHCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCHHHHHHEEC---CCCCEECCCCCEE
T ss_conf 9999854733366667416864324888771699999877404667787550035453005---6773230478632
No 206
>cd01883 EF1_alpha Eukaryotic elongation factor 1 (EF1) alpha subfamily. EF1 is responsible for the GTP-dependent binding of aminoacyl-tRNAs to the ribosomes. EF1 is composed of four subunits: the alpha chain which binds GTP and aminoacyl-tRNAs, the gamma chain that probably plays a role in anchoring the complex to other cellular components and the beta and delta (or beta') chains. This subfamily is the alpha subunit, and represents the counterpart of bacterial EF-Tu for the archaea (aEF1-alpha) and eukaryotes (eEF1-alpha). eEF1-alpha interacts with the actin of the eukaryotic cytoskeleton and may thereby play a role in cellular transformation and apoptosis. EF-Tu can have no such role in bacteria. In humans, the isoform eEF1A2 is overexpressed in 2/3 of breast cancers and has been identified as a putative oncogene. This subfamily also includes Hbs1, a G protein known to be important for efficient growth and protein synthesis under conditions of limiting translation initiation in
Probab=98.91 E-value=3.6e-09 Score=83.42 Aligned_cols=105 Identities=26% Similarity=0.308 Sum_probs=73.6
Q ss_pred CEEEECCCCCCHHHHHHHHHCCHH------------------------CCCCCC------CCCCEEECCCCCCCCCEEEE
Q ss_conf 024311466318889999855200------------------------023454------68721100012456835899
Q gi|254780809|r 221 KIVILGHSNAGKSSLFNALAKKDV------------------------AIVTDI------PGTTRDVLTIDLDLEGYLVK 270 (440)
Q Consensus 221 ~v~i~G~pN~GKSSL~N~L~~~~~------------------------aIVs~~------~GTTRD~i~~~~~i~g~~~~ 270 (440)
.|+++|..++|||||+-+|+-.-- |-|.|. -|-|-|.-...+.+++..+.
T Consensus 1 Ni~iiGHvD~GKSTL~g~lL~~~g~i~~~~~~k~~~~~~~~gk~s~~~a~~lD~~~~ErerGiTI~~~~~~f~~~~~~~~ 80 (219)
T cd01883 1 NLVVIGHVDAGKSTTTGHLLYLLGGVDKRTIEKYEKEAKEMGKGSFKYAWVLDTLKEERERGVTIDVGLAKFETEKYRFT 80 (219)
T ss_pred CEEEEECCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCEEEEEECCCHHHHHCCCCEEEEEEEEEECCEEEE
T ss_conf 98999668998999999999985997688999999999854998750556613898798589258858999984993699
Q ss_pred EEECCHHCCCCHHHHHHHHHHHHHHHHHHCCEEECCCCCCHHH---------------HHHHCCC-CCCCCCCCCCCCC
Q ss_conf 9508100024103566667888998503011020135898566---------------3431289-8532222333446
Q gi|254780809|r 271 ISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE---------------ISFPKNI-DFIFIGTKSDLYS 333 (440)
Q Consensus 271 l~DTaGir~t~d~IE~~GI~ra~~~i~~aDlil~v~D~~~~~~---------------~~~~~~~-~~i~V~NK~Dl~~ 333 (440)
|+||||-++- +......+..||..++|+|+..... +...-+. .+|+++||+|+..
T Consensus 81 iiDtPGH~df--------~~~mi~g~~~ad~ailvvda~~g~~e~g~~~~~QTreH~~l~~~lGik~iIVavNKMD~v~ 151 (219)
T cd01883 81 ILDAPGHRDF--------VPNMITGASQADVAVLVVDARKGEFEAGFEKGGQTREHALLARTLGVKQLIVAVNKMDDVT 151 (219)
T ss_pred EEECCCCHHH--------HHHHHHHHHHCCEEEEEEECCCCCCCCCCCCCCHHHHHHHHHHHCCCCEEEEEEECCCCCC
T ss_conf 9878972667--------8899987753166899998576751036677765999999999849974899998753688
No 207
>KOG0092 consensus
Probab=98.90 E-value=2.2e-09 Score=84.87 Aligned_cols=138 Identities=25% Similarity=0.333 Sum_probs=92.1
Q ss_pred CCEEEECCCCCCHHHHHHHHHCCHHC--CCCCCCCCCEEECCCCCCCCC--EEEEEEECCHHCCCCHHHHHHHHHHHHHH
Q ss_conf 30243114663188899998552000--234546872110001245683--58999508100024103566667888998
Q gi|254780809|r 220 YKIVILGHSNAGKSSLFNALAKKDVA--IVTDIPGTTRDVLTIDLDLEG--YLVKISDTAGIRETDDIVEKEGIKRTFLE 295 (440)
Q Consensus 220 ~~v~i~G~pN~GKSSL~N~L~~~~~a--IVs~~~GTTRD~i~~~~~i~g--~~~~l~DTaGir~t~d~IE~~GI~ra~~~ 295 (440)
++|++.|..|||||||.=+....+-. +++-+-. -.+...+.++. +.+.+-||||.-.-+ ..+-..
T Consensus 6 ~KvvLLG~~~VGKSSlV~Rfvk~~F~e~~e~TIGa---aF~tktv~~~~~~ikfeIWDTAGQERy~--------slapMY 74 (200)
T KOG0092 6 FKVVLLGDSGVGKSSLVLRFVKDQFHENIEPTIGA---AFLTKTVTVDDNTIKFEIWDTAGQERYH--------SLAPMY 74 (200)
T ss_pred EEEEEECCCCCCCHHHHHHHHHCCCCCCCCCCCCE---EEEEEEEEECCCEEEEEEEECCCCCCCC--------CCCCCE
T ss_conf 79999867877702411222327566323454000---7899999848957899998767730033--------556101
Q ss_pred HHHHCCEEECCCCCCHHHHHHH----------CCCC--CCCCCCCCCCCCCCCHHH-------------HHHHHHHHHHH
Q ss_conf 5030110201358985663431----------2898--532222333446542000-------------00133332323
Q gi|254780809|r 296 VENADLILLLKEINSKKEISFP----------KNID--FIFIGTKSDLYSTYTEEY-------------DHLISSFTGEG 350 (440)
Q Consensus 296 i~~aDlil~v~D~~~~~~~~~~----------~~~~--~i~V~NK~Dl~~~~~~~~-------------~~~ISaktg~G 350 (440)
-..|+..|+|+|.++...+... ...+ +-+|.||+||.+...... -+..|||||.|
T Consensus 75 yRgA~AAivvYDit~~~SF~~aK~WvkeL~~~~~~~~vialvGNK~DL~~~R~V~~~ea~~yAe~~gll~~ETSAKTg~N 154 (200)
T KOG0092 75 YRGANAAIVVYDITDEESFEKAKNWVKELQRQASPNIVIALVGNKADLLERREVEFEEAQAYAESQGLLFFETSAKTGEN 154 (200)
T ss_pred ECCCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHCCCCCCHHHHHHHHHHCCCEEEEEECCCCCC
T ss_conf 04776799998556678999999999999862798759998325165410345468888989985498799985255658
Q ss_pred HHHHHHHHHHHHHHHCCC
Q ss_conf 589999999996322035
Q gi|254780809|r 351 LEELINKIKSILSNKFKK 368 (440)
Q Consensus 351 i~~L~~~I~~~l~~~~~~ 368 (440)
++++...|.+.+......
T Consensus 155 v~~if~~Ia~~lp~~~~~ 172 (200)
T KOG0092 155 VNEIFQAIAEKLPCSDPQ 172 (200)
T ss_pred HHHHHHHHHHHCCCCCCC
T ss_conf 999999999756676622
No 208
>TIGR00475 selB selenocysteine-specific translation elongation factor; InterPro: IPR004535 In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3' or 5' non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation . This family describes the elongation factor SelB, a close homologue of EF-Tu. It may function by replacing EF-Tu. A C-terminal domain not found in EF-Tu is in all SelB sequences in the seed alignment except that from Methanococcus jannaschii. This family should not include an equivalent protein for eukaryotes. ; GO: 0003723 RNA binding, 0003746 translation elongation factor activity, 0005525 GTP binding, 0001514 selenocysteine incorporation, 0005737 cytoplasm.
Probab=98.90 E-value=7.7e-09 Score=81.11 Aligned_cols=138 Identities=25% Similarity=0.281 Sum_probs=105.4
Q ss_pred CEEEECCCCCCHHHHHHHHHCCHHCCCCCC------CCCCEEECCCCCCCCC--EEEEEEECCHHCCCCHHHHHHHHHHH
Q ss_conf 024311466318889999855200023454------6872110001245683--58999508100024103566667888
Q gi|254780809|r 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDI------PGTTRDVLTIDLDLEG--YLVKISDTAGIRETDDIVEKEGIKRT 292 (440)
Q Consensus 221 ~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~------~GTTRD~i~~~~~i~g--~~~~l~DTaGir~t~d~IE~~GI~ra 292 (440)
-|+..|.---||++|+-+|+|-+..-..+. -|-|=|.=.+++.+.. ..+.|+|-||= |+. |+-+
T Consensus 2 ~~at~GHvDHGKT~L~k~LTgi~stsa~~lPeEkqKRG~tIDLGfAy~~l~~~n~~l~~iDvPGH-------e~f-l~n~ 73 (627)
T TIGR00475 2 IIATAGHVDHGKTTLLKALTGIDSTSADRLPEEKQKRGMTIDLGFAYLPLPDINKRLGFIDVPGH-------EKF-LSNA 73 (627)
T ss_pred EEEEECCCCHHHHHHHHHHCCCCCHHHHCCCCCCCCCCCEEECCCEECCCCCCCCCCEEEECCCH-------HHH-HHHH
T ss_conf 68731244504799999850643012312774102576624604200367777713347855973-------899-9998
Q ss_pred HHHHHHHCCEEECCCCCCHH------HHH---HHCCCCCCCCCCCCCCCCCCCH-------------------HHHHHHH
Q ss_conf 99850301102013589856------634---3128985322223334465420-------------------0000133
Q gi|254780809|r 293 FLEVENADLILLLKEINSKK------EIS---FPKNIDFIFIGTKSDLYSTYTE-------------------EYDHLIS 344 (440)
Q Consensus 293 ~~~i~~aDlil~v~D~~~~~------~~~---~~~~~~~i~V~NK~Dl~~~~~~-------------------~~~~~IS 344 (440)
+-.+..+|..|+|+|+.+-. .+. .......|+|+||+|..+...- ...+.||
T Consensus 74 lAg~~~i~~alLvVda~eG~~~QT~EHL~vl~~l~~~~~ivvltK~D~~d~~~~~~~E~~~~~~l~~~~~~~n~~~~~~S 153 (627)
T TIGR00475 74 LAGIGGIDAALLVVDADEGVMTQTKEHLAVLKLLGIPELIVVLTKADRVDEEEVKRVEEELKEILEEYEFLKNAKIFKTS 153 (627)
T ss_pred HHHHHHHHHHEEEECCCCCCCCCHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEE
T ss_conf 66756540100354157788532389999999708961999973467456589999999999998764321157479991
Q ss_pred HHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 3323235899999999963220
Q gi|254780809|r 345 SFTGEGLEELINKIKSILSNKF 366 (440)
Q Consensus 345 aktg~Gi~~L~~~I~~~l~~~~ 366 (440)
|.||+||++|++.|.++++...
T Consensus 154 A~tG~Gi~~Lk~~L~~L~e~~~ 175 (627)
T TIGR00475 154 AKTGQGIEELKKELKNLLESLD 175 (627)
T ss_pred CCCCCCHHHHHHHHHHHHHHHH
T ss_conf 3468777899999986577765
No 209
>PRK12317 elongation factor 1-alpha; Reviewed
Probab=98.88 E-value=4.6e-09 Score=82.67 Aligned_cols=110 Identities=23% Similarity=0.306 Sum_probs=75.9
Q ss_pred HCCCEEEECCCCCCHHHHHHHHHCCHH------------------------CCCC------CCCCCCEEECCCCCCCCCE
Q ss_conf 023024311466318889999855200------------------------0234------5468721100012456835
Q gi|254780809|r 218 NGYKIVILGHSNAGKSSLFNALAKKDV------------------------AIVT------DIPGTTRDVLTIDLDLEGY 267 (440)
Q Consensus 218 ~g~~v~i~G~pN~GKSSL~N~L~~~~~------------------------aIVs------~~~GTTRD~i~~~~~i~g~ 267 (440)
.-++|+++|..++|||||+-+|+-..- |.+- ..-|.|-|+-...+..++.
T Consensus 6 ~~l~i~~~GhVD~GKSTL~G~Ll~~~g~~~~~~~~~~~~~~~~~g~~s~~~a~~~D~~~eEr~rGiTid~~~~~f~~~~~ 85 (426)
T PRK12317 6 PHLNLAVIGHVDHGKSTLVGRLLYETGAVDEHIIEEYEEEAKKKGKESFKFAWVMDRLKEERERGVTIDLAHKKFETDKY 85 (426)
T ss_pred CEEEEEEEEECCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCCEEEEECCCCHHHHHCCCEEEEEEEEEECCCC
T ss_conf 78499999522876888876898772994489999999899864877521432125786687558278831699954981
Q ss_pred EEEEEECCHHCCCCHHHHHHHHHHHHHHHHHHCCEEECCCCCCH--------HH--HHHHCCCC-CCCCCCCCCCCCCC
Q ss_conf 89995081000241035666678889985030110201358985--------66--34312898-53222233344654
Q gi|254780809|r 268 LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK--------KE--ISFPKNID-FIFIGTKSDLYSTY 335 (440)
Q Consensus 268 ~~~l~DTaGir~t~d~IE~~GI~ra~~~i~~aDlil~v~D~~~~--------~~--~~~~~~~~-~i~V~NK~Dl~~~~ 335 (440)
.+.|+|+||=++- ++....-+..+|..++|+|+.+. .. +...-+.+ +|+++||+|+.+..
T Consensus 86 ~~~iiD~PGH~~f--------i~nmi~Gas~~D~ailvV~A~~~~G~~~QT~eHl~l~~~lgi~~iiV~vnKmD~v~~~ 156 (426)
T PRK12317 86 YFTIIDCPGHRDF--------VKNMITGASQADAAVLVVSARDAGGVMPQTREHVFLARTLGINQLIVAINKMDAVNYD 156 (426)
T ss_pred EEEEEECCCCHHH--------HHHHHHHHCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCCCC
T ss_conf 6999878963667--------8778745346772799996365667647789999999980998399999533356778
No 210
>PRK10218 GTP-binding protein; Provisional
Probab=98.87 E-value=1.4e-08 Score=79.32 Aligned_cols=137 Identities=21% Similarity=0.250 Sum_probs=90.1
Q ss_pred CEEEECCCCCCHHHHHHHHHCCHHCCCC---------C------CCCCCEEECCCCCCCCCEEEEEEECCHHCCCCHHHH
Q ss_conf 0243114663188899998552000234---------5------468721100012456835899950810002410356
Q gi|254780809|r 221 KIVILGHSNAGKSSLFNALAKKDVAIVT---------D------IPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVE 285 (440)
Q Consensus 221 ~v~i~G~pN~GKSSL~N~L~~~~~aIVs---------~------~~GTTRD~i~~~~~i~g~~~~l~DTaGir~t~d~IE 285 (440)
.++|++..-+|||||..+|+..--++-. | .-|-|--.--..+.|+++.+.|+||||--+-..++|
T Consensus 7 NiaIIAHvDhGKTTL~d~lL~~tG~~~~~~~~~~~~mD~~~~ErERGITI~a~~~~~~~~~~~iNiIDTPGH~DF~gEVe 86 (607)
T PRK10218 7 NIAIIAHVDHGKTTLVDKLLQQSGTFDSRAETQERVMDSNDLEKERGITILAKNTAIKWNDYRINIVDTPGHADFGGEVE 86 (607)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHCCCCCCCCCHHHCCCCCHHHHHCCCEEEEEEEEEEECCEEEEEECCCCCCCCHHHHH
T ss_conf 48999756889889999999972898644541120147868898759726230489960878997865998543014889
Q ss_pred HHHHHHHHHHHHHHCCEEECCCCCCHHH--------HHHHCCCCCCCCCCCCCCCCCCCHH-------------------
Q ss_conf 6667888998503011020135898566--------3431289853222233344654200-------------------
Q gi|254780809|r 286 KEGIKRTFLEVENADLILLLKEINSKKE--------ISFPKNIDFIFIGTKSDLYSTYTEE------------------- 338 (440)
Q Consensus 286 ~~GI~ra~~~i~~aDlil~v~D~~~~~~--------~~~~~~~~~i~V~NK~Dl~~~~~~~------------------- 338 (440)
|++ .-+|-+++|+|+.+-.. .....+.+.|+|+||+|+.......
T Consensus 87 -----R~L---~~~DGalLvVDA~eGv~pQT~~V~~~Al~~~l~~IvvINKiDr~~A~~~~V~~ei~dlfi~L~a~deql 158 (607)
T PRK10218 87 -----RVM---SMVDSVLLVVDAFDGPMPQTRFVTKKAFAYGLKPIVVINKVDRPGARPDWVVDQVFDLFVNLDATDEQL 158 (607)
T ss_pred -----HHH---HHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHCCCCCHHHH
T ss_conf -----789---766848999978878624589999999987997599721667665535789999998874049856774
Q ss_pred --HHHHHHHHHHH----------HHHHHHHHHHHHHHHH
Q ss_conf --00013333232----------3589999999996322
Q gi|254780809|r 339 --YDHLISSFTGE----------GLEELINKIKSILSNK 365 (440)
Q Consensus 339 --~~~~ISaktg~----------Gi~~L~~~I~~~l~~~ 365 (440)
+..+.|+++|. ++..|+++|.+.+...
T Consensus 159 d~Pi~~asa~~G~a~~~~~~~~~dl~pLldaIv~~IPaP 197 (607)
T PRK10218 159 DFPIVYASALNGIAGLDHEDMAEDMTPLYQAIVDHVPAP 197 (607)
T ss_pred CCHHHHHHHHCCEECCCHHHHHHHCCHHHHHHHHHCCCC
T ss_conf 443556554065012682343331360889998548798
No 211
>KOG1145 consensus
Probab=98.86 E-value=2.7e-08 Score=77.38 Aligned_cols=138 Identities=25% Similarity=0.323 Sum_probs=92.0
Q ss_pred HHHHCCCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCCEEEC--CCCCCCCCEEEEEEECCHHCCCCHHHHHHHHHHH
Q ss_conf 43202302431146631888999985520002345468721100--0124568358999508100024103566667888
Q gi|254780809|r 215 IIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVL--TIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRT 292 (440)
Q Consensus 215 ~l~~g~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTTRD~i--~~~~~i~g~~~~l~DTaGir~t~d~IE~~GI~ra 292 (440)
+....+.|.|.|...-||.||+.+|-+...| -++.-|-|--+= ...+. +|..++|.||||-- ..+--|+
T Consensus 149 l~~RpPVVTiMGHVDHGKTTLLD~lRks~VA-A~E~GGITQhIGAF~V~~p-~G~~iTFLDTPGHa-------AF~aMRa 219 (683)
T KOG1145 149 LEPRPPVVTIMGHVDHGKTTLLDALRKSSVA-AGEAGGITQHIGAFTVTLP-SGKSITFLDTPGHA-------AFSAMRA 219 (683)
T ss_pred CCCCCCEEEEEECCCCCHHHHHHHHHHCCEE-HHHCCCCCCEECEEEEECC-CCCEEEEECCCCHH-------HHHHHHH
T ss_conf 5889986998601357700199887407220-1323771000022999638-99778875687478-------8999986
Q ss_pred HHHHHHHCCEEECCCCCC---HHHHHH-----HCCCCCCCCCCCCCCCCCCCHHH-------------------HHHHHH
Q ss_conf 998503011020135898---566343-----12898532222333446542000-------------------001333
Q gi|254780809|r 293 FLEVENADLILLLKEINS---KKEISF-----PKNIDFIFIGTKSDLYSTYTEEY-------------------DHLISS 345 (440)
Q Consensus 293 ~~~i~~aDlil~v~D~~~---~~~~~~-----~~~~~~i~V~NK~Dl~~~~~~~~-------------------~~~ISa 345 (440)
.-+.-+|++++|+-+.+ ++..+. ..+.|+++.+||+|.....+... .+.|||
T Consensus 220 -RGA~vtDIvVLVVAadDGVmpQT~EaIkhAk~A~VpiVvAinKiDkp~a~pekv~~eL~~~gi~~E~~GGdVQvipiSA 298 (683)
T KOG1145 220 -RGANVTDIVVLVVAADDGVMPQTLEAIKHAKSANVPIVVAINKIDKPGANPEKVKRELLSQGIVVEDLGGDVQVIPISA 298 (683)
T ss_pred -CCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHCCCCHHHCCCCEEEEEEEC
T ss_conf -2686444799999726775676899999887659978999843678998989999999876932777078236998651
Q ss_pred HHHHHHHHHHHHHHHHH
Q ss_conf 32323589999999996
Q gi|254780809|r 346 FTGEGLEELINKIKSIL 362 (440)
Q Consensus 346 ktg~Gi~~L~~~I~~~l 362 (440)
++|+|++.|.+++.-..
T Consensus 299 l~g~nl~~L~eaill~A 315 (683)
T KOG1145 299 LTGENLDLLEEAILLLA 315 (683)
T ss_pred CCCCCHHHHHHHHHHHH
T ss_conf 14798689999999999
No 212
>cd04166 CysN_ATPS CysN_ATPS subfamily. CysN, together with protein CysD, form the ATP sulfurylase (ATPS) complex in some bacteria and lower eukaryotes. ATPS catalyzes the production of ATP sulfurylase (APS) and pyrophosphate (PPi) from ATP and sulfate. CysD, which catalyzes ATP hydrolysis, is a member of the ATP pyrophosphatase (ATP PPase) family. CysN hydrolysis of GTP is required for CysD hydrolysis of ATP; however, CysN hydrolysis of GTP is not dependent on CysD hydrolysis of ATP. CysN is an example of lateral gene transfer followed by acquisition of new function. In many organisms, an ATPS exists which is not GTP-dependent and shares no sequence or structural similarity to CysN.
Probab=98.85 E-value=4.4e-09 Score=82.80 Aligned_cols=109 Identities=23% Similarity=0.218 Sum_probs=72.8
Q ss_pred CEEEECCCCCCHHHHHHHHHCCHH------------------------CCCCC------CCCCCEEECCCCCCCCCEEEE
Q ss_conf 024311466318889999855200------------------------02345------468721100012456835899
Q gi|254780809|r 221 KIVILGHSNAGKSSLFNALAKKDV------------------------AIVTD------IPGTTRDVLTIDLDLEGYLVK 270 (440)
Q Consensus 221 ~v~i~G~pN~GKSSL~N~L~~~~~------------------------aIVs~------~~GTTRD~i~~~~~i~g~~~~ 270 (440)
|++++|...+|||||+-+|+-.-- |.+.| .-|-|-|.-...+..++..+.
T Consensus 1 ~~vv~GHVD~GKSTL~g~LL~~~g~i~~~~~~~~~~~~~~~~~~~~~~a~~lD~~~~ErerGiTId~~~~~f~~~~~~~~ 80 (208)
T cd04166 1 RFLTCGSVDDGKSTLIGRLLYDSKSIFEDQLAALESKSCGTGGEPLDLALLVDGLQAEREQGITIDVAYRYFSTPKRKFI 80 (208)
T ss_pred CEEEEECCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCHHHHHHCCCCHHHHHCCCCEEEEEEEEEECCCEEE
T ss_conf 96999748898889999999982996789999999887541676300034346868788269794105899981992699
Q ss_pred EEECCHHCCCCHHHHHHHHHHHHHHHHHHCCEEECCCCCCHHH------HH---HHCCCCCCCCCCCCCCCCCCCH
Q ss_conf 9508100024103566667888998503011020135898566------34---3128985322223334465420
Q gi|254780809|r 271 ISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE------IS---FPKNIDFIFIGTKSDLYSTYTE 337 (440)
Q Consensus 271 l~DTaGir~t~d~IE~~GI~ra~~~i~~aDlil~v~D~~~~~~------~~---~~~~~~~i~V~NK~Dl~~~~~~ 337 (440)
++||||=++- +......+..||..++|+|+.+... .. ...-+.+|+++||+|+.+....
T Consensus 81 iiDtPGH~df--------i~nmi~gas~aD~ailVVda~~G~~~QT~eh~~~~~~lgi~~iIv~vNKmD~v~~~e~ 148 (208)
T cd04166 81 IADTPGHEQY--------TRNMVTGASTADLAILLVDARKGVLEQTRRHSYILSLLGIRHVVVAVNKMDLVDYSEE 148 (208)
T ss_pred EEECCCCHHH--------HHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCHH
T ss_conf 9878962889--------9999999863774799997588872789999999997499839999988576899989
No 213
>cd04165 GTPBP1_like GTPBP1-like. Mammalian GTP binding protein 1 (GTPBP1), GTPBP2, and nematode homologs AGP-1 and CGP-1 are GTPases whose specific functions remain unknown. In mouse, GTPBP1 is expressed in macrophages, in smooth muscle cells of various tissues and in some neurons of the cerebral cortex; GTPBP2 tissue distribution appears to overlap that of GTPBP1. In human leukemia and macrophage cell lines, expression of both GTPBP1 and GTPBP2 is enhanced by interferon-gamma (IFN-gamma). The chromosomal location of both genes has been identified in humans, with GTPBP1 located in chromosome 22q12-13.1 and GTPBP2 located in chromosome 6p21-12. Human glioblastoma multiforme (GBM), a highly-malignant astrocytic glioma and the most common cancer in the central nervous system, has been linked to chromosomal deletions and a translocation on chromosome 6. The GBM translocation results in a fusion of GTPBP2 and PTPRZ1, a protein involved in oligodendrocyte differentiation, recovery, and
Probab=98.84 E-value=1.2e-08 Score=79.68 Aligned_cols=106 Identities=23% Similarity=0.320 Sum_probs=64.0
Q ss_pred CEEEECCCCCCHHHHHHHHHCC--------------------HHCCCCCCC---------C--------CCEEECCCCCC
Q ss_conf 0243114663188899998552--------------------000234546---------8--------72110001245
Q gi|254780809|r 221 KIVILGHSNAGKSSLFNALAKK--------------------DVAIVTDIP---------G--------TTRDVLTIDLD 263 (440)
Q Consensus 221 ~v~i~G~pN~GKSSL~N~L~~~--------------------~~aIVs~~~---------G--------TTRD~i~~~~~ 263 (440)
||+++|...+|||||+-+|+.. +..+.|++. | -|.+.-+....
T Consensus 1 Rv~v~GhVD~GKSTL~G~Lt~g~lDdGrg~ar~~~~rh~hE~~~G~Tssi~~~~lgf~~~g~~~~~~~~~~~~~~~~~~~ 80 (224)
T cd04165 1 RVAVVGNVDAGKSTLLGVLTQGELDNGRGKARLNLFRHKHEVESGRTSSVSNEILGFDSDGEVVNYPDNHLSESDIEICE 80 (224)
T ss_pred CEEEEECCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCCEECCCCCCCCCCCEEEEC
T ss_conf 98999485884889999985677422210677787761899972654411565540101453202134765442201213
Q ss_pred CCCEEEEEEECCHHCCCCHHHHHHHHHHHHHH--HHHHCCEEECCCCCCHH--------HHHHHCCCCCCCCCCCCCCCC
Q ss_conf 68358999508100024103566667888998--50301102013589856--------634312898532222333446
Q gi|254780809|r 264 LEGYLVKISDTAGIRETDDIVEKEGIKRTFLE--VENADLILLLKEINSKK--------EISFPKNIDFIFIGTKSDLYS 333 (440)
Q Consensus 264 i~g~~~~l~DTaGir~t~d~IE~~GI~ra~~~--i~~aDlil~v~D~~~~~--------~~~~~~~~~~i~V~NK~Dl~~ 333 (440)
-.+..+.|+|+||=..- ++-+..- ...+|..++|+++.... .+...-+.|+++|+||+|+.+
T Consensus 81 ~~~k~it~iD~pGH~~y--------~kt~i~G~~~~~~d~~~LvV~A~~G~~~~T~ehl~l~~~l~ip~~vvitKiDl~~ 152 (224)
T cd04165 81 KSSKLVTFIDLAGHERY--------LKTTLFGLTGYAPDYAMLVVAANAGIIGMTKEHLGLALALNIPVFVVVTKIDLAP 152 (224)
T ss_pred CCCCEEEEEECCCHHHH--------HHHHHHHHHCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCC
T ss_conf 67867999978873999--------9999987635568989999317889779999999999983999899998977689
Q ss_pred C
Q ss_conf 5
Q gi|254780809|r 334 T 334 (440)
Q Consensus 334 ~ 334 (440)
+
T Consensus 153 ~ 153 (224)
T cd04165 153 A 153 (224)
T ss_pred H
T ss_conf 8
No 214
>KOG2485 consensus
Probab=98.84 E-value=5.5e-09 Score=82.11 Aligned_cols=65 Identities=38% Similarity=0.431 Sum_probs=53.0
Q ss_pred HHHCCCEEEECCCCCCHHHHHHHHH-----CCHHCCCCCCCCCCEEECCCCCCCCCEEEEEEECCHHCCC
Q ss_conf 3202302431146631888999985-----5200023454687211000124568358999508100024
Q gi|254780809|r 216 IRNGYKIVILGHSNAGKSSLFNALA-----KKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 (440)
Q Consensus 216 l~~g~~v~i~G~pN~GKSSL~N~L~-----~~~~aIVs~~~GTTRD~i~~~~~i~g~~~~l~DTaGir~t 280 (440)
...+..|.++|-||||||||+|++- ..++|.|...||-||++-+.--..+.-++.++||||+-..
T Consensus 140 ~~~~~~vmVvGvPNVGKSsLINa~r~~~Lrk~k~a~vG~~pGVT~~V~~~iri~~rp~vy~iDTPGil~P 209 (335)
T KOG2485 140 LNSEYNVMVVGVPNVGKSSLINALRNVHLRKKKAARVGAEPGVTRRVSERIRISHRPPVYLIDTPGILVP 209 (335)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHHHHHCCCEECCCCCCCEEEEHHHEEECCCCCEEEECCCCCCCC
T ss_conf 6870269997389888088999999887653000010688885223121257436896588668875798
No 215
>cd04102 RabL3 RabL3 (Rab-like3) subfamily. RabL3s are novel proteins that have high sequence similarity with Rab family members, but display features that are distinct from Rabs, and have been termed Rab-like. As in other Rab-like proteins, RabL3 lacks a prenylation site at the C-terminus. The specific function of RabL3 remains unknown.
Probab=98.84 E-value=2.9e-08 Score=77.10 Aligned_cols=109 Identities=22% Similarity=0.338 Sum_probs=69.3
Q ss_pred CCEEEECCCCCCHHHHHHHHHCCHHC-CCCCCCCCCEEECCCCC-----CCCCEEEEEEECCHHCCCCHHHHHHHHHHHH
Q ss_conf 30243114663188899998552000-23454687211000124-----5683589995081000241035666678889
Q gi|254780809|r 220 YKIVILGHSNAGKSSLFNALAKKDVA-IVTDIPGTTRDVLTIDL-----DLEGYLVKISDTAGIRETDDIVEKEGIKRTF 293 (440)
Q Consensus 220 ~~v~i~G~pN~GKSSL~N~L~~~~~a-IVs~~~GTTRD~i~~~~-----~i~g~~~~l~DTaGir~t~d~IE~~GI~ra~ 293 (440)
+||+++|-+.||||||+++++...-. =-+...|++-++-...+ .-..+.+.|.||||-..-. ....
T Consensus 1 vKIlllGDsgVGKTSL~~~~~~~~f~~~~~~TiG~~v~~k~~~~~~~~~~~k~~~l~lWDtaGqery~--------sl~~ 72 (202)
T cd04102 1 VRVLVVGDSGVGKSSLVHLICKNQVLGRPSWTVGCSVDVKHHTYKEGTPEEKTFFVELWDVGGSESVK--------STRA 72 (202)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEEEEEEEEEEEECCCCCCCCEEEEEEEECCCCHHHH--------HHHH
T ss_conf 98999999998999999999839888888885036789999993378767838999999899877577--------6789
Q ss_pred HHHHHHCCEEECCCCCCHHHHH-------HH------------------------CCCCCCCCCCCCCCCCCCC
Q ss_conf 9850301102013589856634-------31------------------------2898532222333446542
Q gi|254780809|r 294 LEVENADLILLLKEINSKKEIS-------FP------------------------KNIDFIFIGTKSDLYSTYT 336 (440)
Q Consensus 294 ~~i~~aDlil~v~D~~~~~~~~-------~~------------------------~~~~~i~V~NK~Dl~~~~~ 336 (440)
.....+|.+++|+|.+++.... .+ ...|+++|.||.|+.....
T Consensus 73 ~yYr~a~gvILVyDvTnr~SF~nL~~Wl~Eil~~~~~~~~~~~~~~~~~~~~~~~~~vPilvVGtK~D~~~~r~ 146 (202)
T cd04102 73 VFYNQVNGIILVHDLTNRKSSQNLQRWSLEALNKDTFPTGLLVTNGDYDSEQFGGNQIPLLVIGTKLDQIPEKE 146 (202)
T ss_pred HHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECHHHCCCCC
T ss_conf 97588989999998949899986999999997536766654556665553334678975899976065243435
No 216
>KOG0073 consensus
Probab=98.82 E-value=4.1e-08 Score=76.10 Aligned_cols=129 Identities=22% Similarity=0.332 Sum_probs=92.7
Q ss_pred CCCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCCEEECCCCCCCCCEEEEEEECCHHCCCCHHHHHHHHHHH-HHHHH
Q ss_conf 23024311466318889999855200023454687211000124568358999508100024103566667888-99850
Q gi|254780809|r 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRT-FLEVE 297 (440)
Q Consensus 219 g~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTTRD~i~~~~~i~g~~~~l~DTaGir~t~d~IE~~GI~ra-~~~i~ 297 (440)
-++|.|.|.-|+||+|++++|++++..-+++ |+-+--.++.++++.+.+.|--|-+.- +.. ...-+
T Consensus 16 E~riLiLGLdNsGKTti~~kl~~~~~~~i~p----t~gf~Iktl~~~~~~L~iwDvGGq~~l---------r~~W~nYfe 82 (185)
T KOG0073 16 EVRILILGLDNSGKTTIVKKLLGEDTDTISP----TLGFQIKTLEYKGYTLNIWDVGGQKTL---------RSYWKNYFE 82 (185)
T ss_pred EEEEEEEECCCCCCHHHHHHHCCCCCCCCCC----CCCEEEEEEEECCEEEEEEECCCCCHH---------HHHHHHHHH
T ss_conf 4479999127898244898853898223287----211355787742428999974885336---------878877665
Q ss_pred HHCCEEECCCCCCHHHH-------------HHHCCCCCCCCCCCCCCCCCCCHH-----------------HHHHHHHHH
Q ss_conf 30110201358985663-------------431289853222233344654200-----------------000133332
Q gi|254780809|r 298 NADLILLLKEINSKKEI-------------SFPKNIDFIFIGTKSDLYSTYTEE-----------------YDHLISSFT 347 (440)
Q Consensus 298 ~aDlil~v~D~~~~~~~-------------~~~~~~~~i~V~NK~Dl~~~~~~~-----------------~~~~ISakt 347 (440)
++|-++||+|.++..-. ....+.+++++.||.|+.+..... ..+..||.|
T Consensus 83 stdglIwvvDssD~~r~~e~~~~L~~lL~eerlaG~~~Lvlank~dl~~~l~~~~i~~~~~L~~l~ks~~~~l~~cs~~t 162 (185)
T KOG0073 83 STDGLIWVVDSSDRMRMQECKQELTELLVEERLAGAPLLVLANKQDLPGALSLEEISKALDLEELAKSHHWRLVKCSAVT 162 (185)
T ss_pred CCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHHHHHHCHHHHCCCCCCEEEEEECCC
T ss_conf 04728999977208889999999999975654348843999734768552478788876477876133672289985454
Q ss_pred H----HHHHHHHHHHHH
Q ss_conf 3----235899999999
Q gi|254780809|r 348 G----EGLEELINKIKS 360 (440)
Q Consensus 348 g----~Gi~~L~~~I~~ 360 (440)
| +||+-|.+.+..
T Consensus 163 ge~l~~gidWL~~~l~~ 179 (185)
T KOG0073 163 GEDLLEGIDWLCDDLMS 179 (185)
T ss_pred CCCHHHHHHHHHHHHHH
T ss_conf 56478888999999998
No 217
>KOG0084 consensus
Probab=98.81 E-value=2.5e-08 Score=77.61 Aligned_cols=137 Identities=22% Similarity=0.260 Sum_probs=96.1
Q ss_pred CCCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCC--EEECCCCCCCCCE--EEEEEECCHHCCCCHHHHHHHHHHHHH
Q ss_conf 230243114663188899998552000234546872--1100012456835--899950810002410356666788899
Q gi|254780809|r 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT--RDVLTIDLDLEGY--LVKISDTAGIRETDDIVEKEGIKRTFL 294 (440)
Q Consensus 219 g~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTT--RD~i~~~~~i~g~--~~~l~DTaGir~t~d~IE~~GI~ra~~ 294 (440)
-+++.|+|-.|||||-|+-++.+.. -++.-++| -|.-..++.++|. ++.+-||||- |+.- ..+..
T Consensus 9 lFKiiliGds~VGKtCL~~Rf~~~~---f~e~~~sTIGVDf~~rt~e~~gk~iKlQIWDTAGQ-------ERFr-tit~s 77 (205)
T KOG0084 9 LFKIILIGDSGVGKTCLLLRFKDDT---FTESYISTIGVDFKIRTVELDGKTIKLQIWDTAGQ-------ERFR-TITSS 77 (205)
T ss_pred EEEEEEECCCCCCHHHHHHHHCCCC---CCHHHCCEEEEEEEEEEEEECCEEEEEEEEECCCC-------HHHH-HHHHH
T ss_conf 8999998778967635556662698---53332323126788987555264888876663653-------7775-55476
Q ss_pred HHHHHCCEEECCCCCCHHHHHH------------HCCCCCCCCCCCCCCCCCCCHHH--------------HHHHHHHHH
Q ss_conf 8503011020135898566343------------12898532222333446542000--------------001333323
Q gi|254780809|r 295 EVENADLILLLKEINSKKEISF------------PKNIDFIFIGTKSDLYSTYTEEY--------------DHLISSFTG 348 (440)
Q Consensus 295 ~i~~aDlil~v~D~~~~~~~~~------------~~~~~~i~V~NK~Dl~~~~~~~~--------------~~~ISaktg 348 (440)
.-..|+-|++|+|.++...... ..+.|.++|.||+|+.....-.. ...+|||++
T Consensus 78 yYR~ahGii~vyDiT~~~SF~~v~~Wi~Ei~~~~~~~v~~lLVGNK~Dl~~~~~v~~~~a~~fa~~~~~~~f~ETSAK~~ 157 (205)
T KOG0084 78 YYRGAHGIIFVYDITKQESFNNVKRWIQEIDRYASENVPKLLVGNKCDLTEKRVVSTEEAQEFADELGIPIFLETSAKDS 157 (205)
T ss_pred HCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHCCCCHHHHHHHHHHCCCCCEEECCCCCC
T ss_conf 61678759999976557776548899998665246778768886245518640017999999986429830355046875
Q ss_pred HHHHHHHHHHHHHHHHHC
Q ss_conf 235899999999963220
Q gi|254780809|r 349 EGLEELINKIKSILSNKF 366 (440)
Q Consensus 349 ~Gi~~L~~~I~~~l~~~~ 366 (440)
.+++.-...|...+....
T Consensus 158 ~NVe~~F~~la~~lk~~~ 175 (205)
T KOG0084 158 TNVEDAFLTLAKELKQRK 175 (205)
T ss_pred CCHHHHHHHHHHHHHHHC
T ss_conf 479999999999999861
No 218
>cd04105 SR_beta Signal recognition particle receptor, beta subunit (SR-beta). SR-beta and SR-alpha form the heterodimeric signal recognition particle (SRP or SR) receptor that binds SRP to regulate protein translocation across the ER membrane. Nascent polypeptide chains are synthesized with an N-terminal hydrophobic signal sequence that binds SRP54, a component of the SRP. SRP directs targeting of the ribosome-nascent chain complex (RNC) to the ER membrane via interaction with the SR, which is localized to the ER membrane. The RNC is then transferred to the protein-conducting channel, or translocon, which facilitates polypeptide translation across the ER membrane or integration into the ER membrane. SR-beta is found only in eukaryotes; it is believed to control the release of the signal sequence from SRP54 upon binding of the ribosome to the translocon. High expression of SR-beta has been observed in human colon cancer, suggesting it may play a role in the development of this typ
Probab=98.81 E-value=3.6e-08 Score=76.48 Aligned_cols=109 Identities=19% Similarity=0.371 Sum_probs=68.1
Q ss_pred CCEEEECCCCCCHHHHHHHHHCCHH-CCCCCC-CCCCEEECCCCCCCCCEEEEEEECCHHCCCCHHHHHHHHHHHHHHHH
Q ss_conf 3024311466318889999855200-023454-68721100012456835899950810002410356666788899850
Q gi|254780809|r 220 YKIVILGHSNAGKSSLFNALAKKDV-AIVTDI-PGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297 (440)
Q Consensus 220 ~~v~i~G~pN~GKSSL~N~L~~~~~-aIVs~~-~GTTRD~i~~~~~i~g~~~~l~DTaGir~t~d~IE~~GI~ra~~~i~ 297 (440)
.+|.|+|+.|+||++||+.|...+. .-|+.+ |.. ..........+.+++++|+||=..-. .+.++...
T Consensus 1 ptvLl~Gl~~aGKT~Lf~~L~~~~~~~T~tS~~~n~--~~~~~~~~~~~~~~~lvD~PGH~klR--------~~~~~~~~ 70 (203)
T cd04105 1 PTVLLLGPSDSGKTALFTKLTTGKYRSTVTSIEPNV--ATFILNSEGKGKKFRLVDVPGHPKLR--------DKLLETLK 70 (203)
T ss_pred CEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCC--EEEECCCCCCCCEEEEEECCCCHHHH--------HHHHHHHH
T ss_conf 959999079998999999997499888778887862--06640246687279999879968899--------99999987
Q ss_pred -HHCCEEECCCCCCHHH---------HH-------HHCCCCCCCCCCCCCCCCCCCHH
Q ss_conf -3011020135898566---------34-------31289853222233344654200
Q gi|254780809|r 298 -NADLILLLKEINSKKE---------IS-------FPKNIDFIFIGTKSDLYSTYTEE 338 (440)
Q Consensus 298 -~aDlil~v~D~~~~~~---------~~-------~~~~~~~i~V~NK~Dl~~~~~~~ 338 (440)
.++.|+||+|+++... +. ..+..|++++.||.|+....+..
T Consensus 71 ~~~~gIVfvVDs~~~~~~l~~~Ae~Ly~iL~~~~~~~~~iPvLIacNKqDl~tA~~~~ 128 (203)
T cd04105 71 NSAKGIVFVVDSATFQKNLKDVAEFLYDILTDLEKVKNKIPVLIACNKQDLFTAKPAK 128 (203)
T ss_pred HCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCCHH
T ss_conf 5498999999688751119999999999986266436899889998661434578999
No 219
>cd04169 RF3 RF3 subfamily. Peptide chain release factor 3 (RF3) is a protein involved in the termination step of translation in bacteria. Termination occurs when class I release factors (RF1 or RF2) recognize the stop codon at the A-site of the ribosome and activate the release of the nascent polypeptide. The class II release factor RF3 then initiates the release of the class I RF from the ribosome. RF3 binds to the RF/ribosome complex in the inactive (GDP-bound) state. GDP/GTP exchange occurs, followed by the release of the class I RF. Subsequent hydrolysis of GTP to GDP triggers the release of RF3 from the ribosome. RF3 also enhances the efficiency of class I RFs at less preferred stop codons and at stop codons in weak contexts.
Probab=98.79 E-value=1.8e-08 Score=78.57 Aligned_cols=106 Identities=19% Similarity=0.259 Sum_probs=70.5
Q ss_pred CEEEECCCCCCHHHHHHHHHCCHHCC-----CC--CCCCCC-EEECC-------------CCCCCCCEEEEEEECCHHCC
Q ss_conf 02431146631888999985520002-----34--546872-11000-------------12456835899950810002
Q gi|254780809|r 221 KIVILGHSNAGKSSLFNALAKKDVAI-----VT--DIPGTT-RDVLT-------------IDLDLEGYLVKISDTAGIRE 279 (440)
Q Consensus 221 ~v~i~G~pN~GKSSL~N~L~~~~~aI-----Vs--~~~GTT-RD~i~-------------~~~~i~g~~~~l~DTaGir~ 279 (440)
.|+|+|...+||+||.-+|+-.--+| |. .-.||| -|+-. ..+.|++.++.|+||||.-+
T Consensus 4 niai~gH~gaGKTtL~EalL~~~G~i~r~G~V~~~~~~g~t~~D~~~eE~~R~iSi~~~~~~~~w~~~kinliDTPG~~D 83 (267)
T cd04169 4 TFAIISHPDAGKTTLTEKLLLFGGAIREAGAVKARKSRKHATSDWMEIEKQRGISVTSSVMQFEYRDCVINLLDTPGHED 83 (267)
T ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCEEEECCCCCCCCCCCHHHHHHCCCEEECCEEEEEECCEEEEEEECCCCHH
T ss_conf 79998479999899999999866863338546303688860468879998659448636378878998999997969778
Q ss_pred CCHHHHHHHHHHHHHHHHHHCCEEECCCCCCHH-------H-HHHHCCCCCCCCCCCCCCCCC
Q ss_conf 410356666788899850301102013589856-------6-343128985322223334465
Q gi|254780809|r 280 TDDIVEKEGIKRTFLEVENADLILLLKEINSKK-------E-ISFPKNIDFIFIGTKSDLYST 334 (440)
Q Consensus 280 t~d~IE~~GI~ra~~~i~~aDlil~v~D~~~~~-------~-~~~~~~~~~i~V~NK~Dl~~~ 334 (440)
-. -.+...+.-+|-.++|+|+.+.- | .....++|.++++||+|....
T Consensus 84 F~--------~e~~~al~v~D~AviVv~a~~GVe~~T~~~w~~a~~~~iP~iifINKmDr~~a 138 (267)
T cd04169 84 FS--------EDTYRTLTAVDSAVMVIDAAKGVEPQTRKLFEVCRLRGIPIITFINKLDREGR 138 (267)
T ss_pred HH--------HHHHHHHHHHHCEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCC
T ss_conf 99--------99999998864547995256665355899999999729997999853456789
No 220
>KOG2423 consensus
Probab=98.79 E-value=3e-09 Score=84.01 Aligned_cols=59 Identities=32% Similarity=0.440 Sum_probs=49.4
Q ss_pred HHCCCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCCEEECCCCCCCCCEEEEEEECCHHC
Q ss_conf 20230243114663188899998552000234546872110001245683589995081000
Q gi|254780809|r 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278 (440)
Q Consensus 217 ~~g~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTTRD~i~~~~~i~g~~~~l~DTaGir 278 (440)
+.-+.|.++|+|||||||++|.|-.++..-|.+|||-|.= =.++.+- ..+-|+|.||+-
T Consensus 305 kkqISVGfiGYPNvGKSSiINTLR~KkVCkvAPIpGETKV--WQYItLm-krIfLIDcPGvV 363 (572)
T KOG2423 305 KKQISVGFIGYPNVGKSSIINTLRKKKVCKVAPIPGETKV--WQYITLM-KRIFLIDCPGVV 363 (572)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCHH--HHHHHHH-HCEEEECCCCCC
T ss_conf 6522566624888755888888753453112588884038--8999887-213674479724
No 221
>KOG0094 consensus
Probab=98.79 E-value=1.8e-08 Score=78.53 Aligned_cols=138 Identities=22% Similarity=0.313 Sum_probs=96.4
Q ss_pred HCCCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCC-CCEEECCCCCCCCCEEE--EEEECCHHCCCCHHHHHHHHHHHHH
Q ss_conf 02302431146631888999985520002345468-72110001245683589--9950810002410356666788899
Q gi|254780809|r 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPG-TTRDVLTIDLDLEGYLV--KISDTAGIRETDDIVEKEGIKRTFL 294 (440)
Q Consensus 218 ~g~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~G-TTRD~i~~~~~i~g~~~--~l~DTaGir~t~d~IE~~GI~ra~~ 294 (440)
..++|+.+|.-+|||.||+++.+-..-- .++-- ---|.+..++.+.|.++ .|-||||- |+.- ...-.
T Consensus 21 k~~KlVflGdqsVGKTslItRf~yd~fd--~~YqATIGiDFlskt~~l~d~~vrLQlWDTAGQ-------ERFr-slips 90 (221)
T KOG0094 21 KKYKLVFLGDQSVGKTSLITRFMYDKFD--NTYQATIGIDFLSKTMYLEDRTVRLQLWDTAGQ-------ERFR-SLIPS 90 (221)
T ss_pred EEEEEEEECCCCCCHHHHHHHHHHHHHC--CCCCCEEEEEEEEEEEEECCCEEEEEEEECCCH-------HHHH-HHHHH
T ss_conf 0778999866765447888899876304--645654656777888997381789998754467-------8775-31055
Q ss_pred HHHHHCCEEECCCCCCHH-------HHHHHC------CCCCCCCCCCCCCCCCCCHH-------------HHHHHHHHHH
Q ss_conf 850301102013589856-------634312------89853222233344654200-------------0001333323
Q gi|254780809|r 295 EVENADLILLLKEINSKK-------EISFPK------NIDFIFIGTKSDLYSTYTEE-------------YDHLISSFTG 348 (440)
Q Consensus 295 ~i~~aDlil~v~D~~~~~-------~~~~~~------~~~~i~V~NK~Dl~~~~~~~-------------~~~~ISaktg 348 (440)
.+..|.+.+.|+|.++.+ |+.... +.-+.+|.||.||.++..-. .-..+||++|
T Consensus 91 Y~Rds~vaviVyDit~~~Sfe~t~kWi~dv~~e~gs~~viI~LVGnKtDL~dkrqvs~eEg~~kAkel~a~f~etsak~g 170 (221)
T KOG0094 91 YIRDSSVAVIVYDITDRNSFENTSKWIEDVRRERGSDDVIIFLVGNKTDLSDKRQVSIEEGERKAKELNAEFIETSAKAG 170 (221)
T ss_pred HCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCEEEEECCCCC
T ss_conf 50387379999963564017769999999986068886599997163124446565388789889872958998304479
Q ss_pred HHHHHHHHHHHHHHHHH
Q ss_conf 23589999999996322
Q gi|254780809|r 349 EGLEELINKIKSILSNK 365 (440)
Q Consensus 349 ~Gi~~L~~~I~~~l~~~ 365 (440)
.++..|...|...+...
T Consensus 171 ~NVk~lFrrIaa~l~~~ 187 (221)
T KOG0094 171 ENVKQLFRRIAAALPGM 187 (221)
T ss_pred CCHHHHHHHHHHHCCCC
T ss_conf 98899999999866573
No 222
>cd04170 EF-G_bact Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group
Probab=98.78 E-value=2.4e-08 Score=77.73 Aligned_cols=105 Identities=30% Similarity=0.308 Sum_probs=73.1
Q ss_pred CEEEECCCCCCHHHHHHHHHCCHHCCCCCCCC-----CC-EEECC-------------CCCCCCCEEEEEEECCHHCCCC
Q ss_conf 02431146631888999985520002345468-----72-11000-------------1245683589995081000241
Q gi|254780809|r 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPG-----TT-RDVLT-------------IDLDLEGYLVKISDTAGIRETD 281 (440)
Q Consensus 221 ~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~G-----TT-RD~i~-------------~~~~i~g~~~~l~DTaGir~t~ 281 (440)
.|+|+|.+-+||+||.-+|+-.-.+| +.+| || -|+-. ..+.|+|..+.|+||||.-+-.
T Consensus 1 Ni~iigH~~aGKTtL~E~lL~~~g~i--~~~G~V~~g~t~~D~~~~E~~RgiSi~s~~~~~~w~~~~inliDTPG~~DF~ 78 (268)
T cd04170 1 NIALVGHSGSGKTTLAEALLYATGAI--DRLGSVEDGTTVSDYDPEEIKRKMSISTSVAPLEWKGHKINLIDTPGYADFV 78 (268)
T ss_pred CEEEEECCCCCHHHHHHHHHHHCCCC--CCCCCCCCCCCCCCCCHHHHHCCCCEECCEEEEEECCEEEEEEECCCCHHHH
T ss_conf 98999089999899999999966996--6576545897357787889867967513557888899799998698975799
Q ss_pred HHHHHHHHHHHHHHHHHHCCEEECCCCCCHHHH--------HHHCCCCCCCCCCCCCCCCCC
Q ss_conf 035666678889985030110201358985663--------431289853222233344654
Q gi|254780809|r 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKEI--------SFPKNIDFIFIGTKSDLYSTY 335 (440)
Q Consensus 282 d~IE~~GI~ra~~~i~~aDlil~v~D~~~~~~~--------~~~~~~~~i~V~NK~Dl~~~~ 335 (440)
. -+...+.-+|-.++|+|+.+.-+. ....++|.++++||+|.....
T Consensus 79 ~--------e~~~aL~v~D~Av~Vida~~GVe~~T~~~w~~~~~~~iP~i~fINKmDr~~ad 132 (268)
T cd04170 79 G--------ETRAALRAADAALVVVSAQSGVEVGTEKLWEFADEAGIPRIIFINKMDRERAD 132 (268)
T ss_pred H--------HHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCC
T ss_conf 9--------99998404783999941875476879999999998599989999787878996
No 223
>pfam04548 AIG1 AIG1 family. Arabidopsis protein AIG1 appears to be involved in plant resistance to bacteria.
Probab=98.78 E-value=1.1e-07 Score=73.05 Aligned_cols=116 Identities=19% Similarity=0.212 Sum_probs=77.6
Q ss_pred CCEEEECCCCCCHHHHHHHHHCCHHCCCCCC-CCCCEEECCCCCCCCCEEEEEEECCHHCCCCHHHHHH--HHHHHHHHH
Q ss_conf 3024311466318889999855200023454-6872110001245683589995081000241035666--678889985
Q gi|254780809|r 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDI-PGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKE--GIKRTFLEV 296 (440)
Q Consensus 220 ~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~-~GTTRD~i~~~~~i~g~~~~l~DTaGir~t~d~IE~~--GI~ra~~~i 296 (440)
.+|+|+|++.+||||.-|.++|++..-...- ...|++.....-.++|..+.++||||+-++...-|.. -|.+.....
T Consensus 1 LrivLlGktG~GKSstgNtILG~~~F~s~~~~~~vT~~c~~~~~~~~gr~v~ViDTPgl~~~~~~~~~~~~ei~~~~~l~ 80 (200)
T pfam04548 1 LRIVLVGKTGNGKSATGNSILGRKAFESKLRAQGVTKTCQLVSRTWDGRIINVIDTPGLFDLSVSNDFISKEIIRCLLLA 80 (200)
T ss_pred CEEEEECCCCCCHHHHHHHHCCCCCCCCCCCCCCCCEEEEEEEEEECCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHC
T ss_conf 98999799998436557661797533578988887413689999989968999978663576778699999999999855
Q ss_pred -HHHCCEEECCCCCC--HHHHHH---H-------CCCCCCCCCCCCCCCCCC
Q ss_conf -03011020135898--566343---1-------289853222233344654
Q gi|254780809|r 297 -ENADLILLLKEINS--KKEISF---P-------KNIDFIFIGTKSDLYSTY 335 (440)
Q Consensus 297 -~~aDlil~v~D~~~--~~~~~~---~-------~~~~~i~V~NK~Dl~~~~ 335 (440)
...+++|+|++... ..+... . .-...|++++-.|.....
T Consensus 81 ~pGpHa~LLVi~~~rfT~ee~~~v~~i~~~FGe~~~~~tIVLFT~~D~L~~~ 132 (200)
T pfam04548 81 EPGPHAVLLVLSLGRFTEEEEQALRTLQELFGSKILDYMIVVFTRKDDLEDD 132 (200)
T ss_pred CCCCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHEEEEEECHHHCCCC
T ss_conf 8998579999866888889999999999997578680099999780214999
No 224
>cd01886 EF-G Elongation factor G (EF-G) subfamily. Translocation is mediated by EF-G (also called translocase). The structure of EF-G closely resembles that of the complex between EF-Tu and tRNA. This is an example of molecular mimicry; a protein domain evolved so that it mimics the shape of a tRNA molecule. EF-G in the GTP form binds to the ribosome, primarily through the interaction of its EF-Tu-like domain with the 50S subunit. The binding of EF-G to the ribosome in this manner stimulates the GTPase activity of EF-G. On GTP hydrolysis, EF-G undergoes a conformational change that forces its arm deeper into the A site on the 30S subunit. To accommodate this domain, the peptidyl-tRNA in the A site moves to the P site, carrying the mRNA and the deacylated tRNA with it. The ribosome may be prepared for these rearrangements by the initial binding of EF-G as well. The dissociation of EF-G leaves the ribosome ready to accept the next aminoacyl-tRNA into the A site. This group conta
Probab=98.78 E-value=2.5e-08 Score=77.62 Aligned_cols=105 Identities=18% Similarity=0.069 Sum_probs=71.2
Q ss_pred CEEEECCCCCCHHHHHHHHHCCHHCCCCCCC-----CCC-EEEC-------------CCCCCCCCEEEEEEECCHHCCCC
Q ss_conf 0243114663188899998552000234546-----872-1100-------------01245683589995081000241
Q gi|254780809|r 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIP-----GTT-RDVL-------------TIDLDLEGYLVKISDTAGIRETD 281 (440)
Q Consensus 221 ~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~-----GTT-RD~i-------------~~~~~i~g~~~~l~DTaGir~t~ 281 (440)
.|+|+|...+||+||.-+|+-.-.+| +.. ||| -|+- -..+.|++..+.|+||||.-+-.
T Consensus 1 Niai~gH~gaGKTtL~EalL~~ag~i--~r~G~v~~g~tv~D~~~eE~~R~isi~~~~~~~~w~~~~inliDTPG~~DF~ 78 (270)
T cd01886 1 NIGIIAHIDAGKTTTTERILYYTGRI--HKIGEVHGGGATMDFMEQERERGITIQSAATTCFWKDHRINIIDTPGHVDFT 78 (270)
T ss_pred CEEEEECCCCCHHHHHHHHHHHCCCC--CCCCEECCCCCCCCCCHHHHHCCCEEECCEEEEEECCEEEEEEECCCCHHHH
T ss_conf 98999689999889999999866873--5581553897556684889876870733668999899899998696967889
Q ss_pred HHHHHHHHHHHHHHHHHHCCEEECCCCCCHHH------H--HHHCCCCCCCCCCCCCCCCCC
Q ss_conf 03566667888998503011020135898566------3--431289853222233344654
Q gi|254780809|r 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKE------I--SFPKNIDFIFIGTKSDLYSTY 335 (440)
Q Consensus 282 d~IE~~GI~ra~~~i~~aDlil~v~D~~~~~~------~--~~~~~~~~i~V~NK~Dl~~~~ 335 (440)
.+ +...+.-+|-.++|+|+.+.-+ . ....++|.++++||.|.....
T Consensus 79 ~e--------~~~aL~~~D~AviVv~a~~GVe~~T~~~w~~~~~~~lP~i~fINKmDre~ad 132 (270)
T cd01886 79 IE--------VERSLRVLDGAVAVFDAVAGVEPQTETVWRQADRYNVPRIAFVNKMDRTGAD 132 (270)
T ss_pred HH--------HHHHHHHHCEEEEEEECCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCC
T ss_conf 99--------9999877555999984676442636999988998499989999887877887
No 225
>COG0481 LepA Membrane GTPase LepA [Cell envelope biogenesis, outer membrane]
Probab=98.78 E-value=9.4e-09 Score=80.53 Aligned_cols=141 Identities=23% Similarity=0.341 Sum_probs=94.8
Q ss_pred CEEEECCCCCCHHHHHHHHHCCHHCC--------------CCCCCCCCEEECCCCCCC-----CCEEEEEEECCHHCCCC
Q ss_conf 02431146631888999985520002--------------345468721100012456-----83589995081000241
Q gi|254780809|r 221 KIVILGHSNAGKSSLFNALAKKDVAI--------------VTDIPGTTRDVLTIDLDL-----EGYLVKISDTAGIRETD 281 (440)
Q Consensus 221 ~v~i~G~pN~GKSSL~N~L~~~~~aI--------------Vs~~~GTTRD~i~~~~~i-----~g~~~~l~DTaGir~t~ 281 (440)
.-+|+-.-.-|||||-.+|+..--++ +-..-|-|--.-...+.+ +.+.+.|+||||--+-.
T Consensus 11 NFsIIAHIDHGKSTLaDRlle~t~~~~~Rem~~Q~LDsMdiERERGITIKaq~v~l~Yk~~~g~~Y~lnlIDTPGHVDFs 90 (603)
T COG0481 11 NFSIIAHIDHGKSTLADRLLELTGGLSEREMRAQVLDSMDIERERGITIKAQAVRLNYKAKDGETYVLNLIDTPGHVDFS 90 (603)
T ss_pred CEEEEEEECCCCCHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEEEEEEEECCCCEEEEEECCCCCCCCEE
T ss_conf 22799984278204889999984676767888875221346766284587327899999479977999972799844367
Q ss_pred HHHHHHHHHHHHHHHHHHCCEEECCCCCCHHH--------HHHHCCCCCCCCCCCCCCCCCCCHH--------------H
Q ss_conf 03566667888998503011020135898566--------3431289853222233344654200--------------0
Q gi|254780809|r 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKE--------ISFPKNIDFIFIGTKSDLYSTYTEE--------------Y 339 (440)
Q Consensus 282 d~IE~~GI~ra~~~i~~aDlil~v~D~~~~~~--------~~~~~~~~~i~V~NK~Dl~~~~~~~--------------~ 339 (440)
-+ +.|++.+-+. .|+|+|+++.-+ ..+.++..++.|+||+||.....+. .
T Consensus 91 YE-----VSRSLAACEG---alLvVDAsQGveAQTlAN~YlAle~~LeIiPViNKIDLP~Adpervk~eIe~~iGid~~d 162 (603)
T COG0481 91 YE-----VSRSLAACEG---ALLVVDASQGVEAQTLANVYLALENNLEIIPVLNKIDLPAADPERVKQEIEDIIGIDASD 162 (603)
T ss_pred EE-----EHHHHHHCCC---CEEEEECCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHHHHCCCCCC
T ss_conf 77-----6133763777---189998765537889999999987696799753225688789789999999870989520
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 001333323235899999999963220358
Q gi|254780809|r 340 DHLISSFTGEGLEELINKIKSILSNKFKKL 369 (440)
Q Consensus 340 ~~~ISaktg~Gi~~L~~~I~~~l~~~~~~~ 369 (440)
.+.+|||||.|+++++++|.+.+.......
T Consensus 163 av~~SAKtG~gI~~iLe~Iv~~iP~P~g~~ 192 (603)
T COG0481 163 AVLVSAKTGIGIEDVLEAIVEKIPPPKGDP 192 (603)
T ss_pred CEEEECCCCCCHHHHHHHHHHHCCCCCCCC
T ss_conf 046763468997999999996289898999
No 226
>PTZ00141 elongation factor 1 alpha; Provisional
Probab=98.78 E-value=2.1e-08 Score=78.14 Aligned_cols=111 Identities=25% Similarity=0.312 Sum_probs=76.1
Q ss_pred HHCCCEEEECCCCCCHHHHHHHHHCCH------------------------HCCCCC------CCCCCEEECCCCCCCCC
Q ss_conf 202302431146631888999985520------------------------002345------46872110001245683
Q gi|254780809|r 217 RNGYKIVILGHSNAGKSSLFNALAKKD------------------------VAIVTD------IPGTTRDVLTIDLDLEG 266 (440)
Q Consensus 217 ~~g~~v~i~G~pN~GKSSL~N~L~~~~------------------------~aIVs~------~~GTTRD~i~~~~~i~g 266 (440)
+.-++++++|...+|||||+-+|+-.- -|.+.| .-|-|-|+-...+....
T Consensus 5 k~~l~i~~~GhVD~GKSTL~G~Ll~~~g~v~~~~~~~~~~~~~~~g~~~~~~a~~~D~~~~Er~rGiTidv~~~~f~t~~ 84 (443)
T PTZ00141 5 KTHINLVVIGHVDSGKSTTTGHLIYKLGGIDKRTIEKFEKESAEMGKGSFKYAWVLDKLKAERERGITIDIALWKFETPK 84 (443)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCEEHHHHCCCHHHHHCCCEEEEEEEEEECCC
T ss_conf 87659999947798288889999987388468899999888887178720004453077667636710734799994398
Q ss_pred EEEEEEECCHHCCCCHHHHHHHHHHHHHHHHHHCCEEECCCCCCHH-------------HH--HHHCCCC-CCCCCCCCC
Q ss_conf 5899950810002410356666788899850301102013589856-------------63--4312898-532222333
Q gi|254780809|r 267 YLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK-------------EI--SFPKNID-FIFIGTKSD 330 (440)
Q Consensus 267 ~~~~l~DTaGir~t~d~IE~~GI~ra~~~i~~aDlil~v~D~~~~~-------------~~--~~~~~~~-~i~V~NK~D 330 (440)
..+.++|+||=++- ++....-+..||+.++|+|+.... .+ ...-+.+ +|+++||+|
T Consensus 85 ~~~~iiD~PGH~~f--------i~nmi~Gas~aD~ailvVdA~~G~~e~gf~~~gQTreH~~i~~~lgv~~iIVaVNKmD 156 (443)
T PTZ00141 85 YYYTVIDAPGHRDF--------IKNMITGTSQADVALLVVPAEVGGFEGAFSKEGQTREHALLAFTLGVKQIIVGINKMD 156 (443)
T ss_pred EEEEEEECCCHHHH--------HHHHHHHHCCCCEEEEEEECCCCCCCCCCCCCCCCHHHHHHHHHCCCCEEEEEEEEEC
T ss_conf 89999989972888--------9999963410775899998677852134666786399999999739975999999621
Q ss_pred CCCCC
Q ss_conf 44654
Q gi|254780809|r 331 LYSTY 335 (440)
Q Consensus 331 l~~~~ 335 (440)
+.+..
T Consensus 157 ~v~~~ 161 (443)
T PTZ00141 157 TCDYK 161 (443)
T ss_pred CCCCH
T ss_conf 56660
No 227
>TIGR02528 EutP ethanolamine utilization protein, EutP; InterPro: IPR012381 Members of this family function in ethanolamine and propanediol degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose , . More than 10f the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect , . The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella , , . Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 biogenic amine metabolic process.
Probab=98.77 E-value=7.7e-09 Score=81.14 Aligned_cols=122 Identities=25% Similarity=0.338 Sum_probs=85.4
Q ss_pred CEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCCEEECCCCCCCCCEEEEEEECCH-HCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 02431146631888999985520002345468721100012456835899950810-00241035666678889985030
Q gi|254780809|r 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAG-IRETDDIVEKEGIKRTFLEVENA 299 (440)
Q Consensus 221 ~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTTRD~i~~~~~i~g~~~~l~DTaG-ir~t~d~IE~~GI~ra~~~i~~a 299 (440)
||+++|+...||.||+|+|-|++.- +.= +.-+++.. =..+|||| +=+...--.. -+-.+.+|
T Consensus 2 r~~f~G~~gCGKTTL~q~L~g~~~~----YKK------TQAvE~~~--k~~IDTPGEY~enr~~Y~A-----L~vtaaDA 64 (144)
T TIGR02528 2 RIMFIGSVGCGKTTLTQALQGEEIK----YKK------TQAVEYKD--KEAIDTPGEYVENRRYYSA-----LIVTAADA 64 (144)
T ss_pred EEEEEECCCCCHHHHHHHCCCCCCC----EEE------EEEEEECC--CCCCCCCCCCCCCCCHHHH-----HHHHHHCC
T ss_conf 1788715888744354311687321----023------34454258--8865598500157523788-----88887210
Q ss_pred CCEEECCCCCCHHHH------HHHCCCCCCCCCCCCCCCCCCCH-------------HHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 110201358985663------43128985322223334465420-------------0000133332323589999999
Q gi|254780809|r 300 DLILLLKEINSKKEI------SFPKNIDFIFIGTKSDLYSTYTE-------------EYDHLISSFTGEGLEELINKIK 359 (440)
Q Consensus 300 Dlil~v~D~~~~~~~------~~~~~~~~i~V~NK~Dl~~~~~~-------------~~~~~ISaktg~Gi~~L~~~I~ 359 (440)
|+|++|.++.++... ....++++|-|++|+||.+.... ...+.||+.+..||++|.+.|.
T Consensus 65 d~i~lV~~a~~~~~~f~PgF~~~f~kK~~IG~vTK~DLA~~d~~i~r~~~~L~~AG~~~iF~~~~~d~~G~~~l~~yL~ 143 (144)
T TIGR02528 65 DVIALVQSATDEESRFSPGFASIFVKKEVIGIVTKIDLAEADKDIERAKRLLETAGAEKIFEISSVDEKGIEELVDYLN 143 (144)
T ss_pred EEEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCEEECCCCCHHHHHHHHHHC
T ss_conf 2366773577642237850002367886347884037887734799999998723654331650778045899999844
No 228
>cd04104 p47_IIGP_like p47 (47-kDa) family. The p47 GTPase family consists of several highly homologous proteins, including IGTP, TGTP/Mg21, IRG-47, GTPI, LRG-47, and IIGP1. They are found in higher eukaryotes where they play a role in immune resistance against intracellular pathogens. p47 proteins exist at low resting levels in mouse cells, but are strongly induced by Type II interferon (IFN-gamma). ITGP is critical for resistance to Toxoplasma gondii infection and in involved in inhibition of Coxsackievirus-B3-induced apoptosis. TGTP was shown to limit vesicular stomatitis virus (VSV) infection of fibroblasts in vitro. IRG-47 is involved in resistance to T. gondii infection. LRG-47 has been implicated in resistance to T. gondii, Listeria monocytogenes, Leishmania, and mycobacterial infections. IIGP1 has been shown to localize to the ER and to the Golgi membranes in IFN-induced cells and inflamed tissues. In macrophages, IIGP1 interacts with hook3, a microtubule binding protei
Probab=98.76 E-value=7.1e-08 Score=74.41 Aligned_cols=107 Identities=24% Similarity=0.297 Sum_probs=66.8
Q ss_pred CCEEEECCCCCCHHHHHHHHHC-----CHHCCCCCCCCCCEEECCCCCCCCCE-EEEEEECCHHCCCCHHHHHHHHHHHH
Q ss_conf 3024311466318889999855-----20002345468721100012456835-89995081000241035666678889
Q gi|254780809|r 220 YKIVILGHSNAGKSSLFNALAK-----KDVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGIRETDDIVEKEGIKRTF 293 (440)
Q Consensus 220 ~~v~i~G~pN~GKSSL~N~L~~-----~~~aIVs~~~GTTRD~i~~~~~i~g~-~~~l~DTaGir~t~d~IE~~GI~ra~ 293 (440)
++|+++|.+++|||||+|+|.| +..|=|.-. -||++.... ..... .+.|.|.||+..+.=..+.- . ..
T Consensus 2 l~iaVtGesGaGKSSfINAlRGl~~~d~~aA~tGv~-eTT~~~~~Y--~~p~~pnv~lwDlPG~Gt~~f~~~~Y-l--~~ 75 (197)
T cd04104 2 LNIAVTGESGAGKSSFINALRGVGHEEEGAAPTGVV-ETTMKRTPY--PHPKFPNVTLWDLPGIGSTAFPPDDY-L--EE 75 (197)
T ss_pred EEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCC-CCCCCCEEC--CCCCCCCCEEECCCCCCCCCCCHHHH-H--HH
T ss_conf 179995589986899999986889887775888887-467786204--79999987697289999876598999-9--86
Q ss_pred HHHHHHCCEEECCCCC-CHHHHHH-----HCCCCCCCCCCCCCCC
Q ss_conf 9850301102013589-8566343-----1289853222233344
Q gi|254780809|r 294 LEVENADLILLLKEIN-SKKEISF-----PKNIDFIFIGTKSDLY 332 (440)
Q Consensus 294 ~~i~~aDlil~v~D~~-~~~~~~~-----~~~~~~i~V~NK~Dl~ 332 (440)
......|++|.+.+.. ...+..+ ..++++.+|.||+|..
T Consensus 76 ~~~~~yD~fiiiss~rf~~nd~~la~~i~~~gK~fyfVRsK~D~d 120 (197)
T cd04104 76 MKFSEYDFFIIISSTRFSSNDVKLAKAIQCMGKKFYFVRTKVDRD 120 (197)
T ss_pred CCCCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEECCCCC
T ss_conf 585545789998388641426999999998099289998612140
No 229
>PRK04000 translation initiation factor IF-2 subunit gamma; Validated
Probab=98.76 E-value=1.5e-08 Score=79.07 Aligned_cols=139 Identities=19% Similarity=0.177 Sum_probs=86.0
Q ss_pred CCCEEEECCCCCCHHHHHHHHHCCHH--CCCCCCCCCCEEECCCC--------------------CCCCC------EEEE
Q ss_conf 23024311466318889999855200--02345468721100012--------------------45683------5899
Q gi|254780809|r 219 GYKIVILGHSNAGKSSLFNALAKKDV--AIVTDIPGTTRDVLTID--------------------LDLEG------YLVK 270 (440)
Q Consensus 219 g~~v~i~G~pN~GKSSL~N~L~~~~~--aIVs~~~GTTRD~i~~~--------------------~~i~g------~~~~ 270 (440)
-++|+.+|....|||||..+|+|.+. .--.-.-|.|-|.=.+. ....+ ..+.
T Consensus 8 ~vNIgtiGHVDHGKTTLv~aLTg~~tdr~~eE~~RGiTI~LG~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~is 87 (410)
T PRK04000 8 EVNIGMVGHVDHGKTTLVQALTGVWTDTHSEELKRGITIRLGYADATIYKCPNCEGPEAYTTEPTCPKCGSETELLRRVS 87 (410)
T ss_pred CCEEEEEEEECCCHHHHHHHHHCCCCCCCHHHHHCCCCCCCCCCCEEHHCCCCCCCCCCEEEECCCCCCCCCCCCCCEEE
T ss_conf 52699996517869999988739754238878864881210510100120545554441353023344455544331699
Q ss_pred EEECCHHCCCCHHHHHHHHHHHHHHHHHHCCEEECCCCCCHH-H------HHH---HCCCCCCCCCCCCCCCCCCCH---
Q ss_conf 950810002410356666788899850301102013589856-6------343---128985322223334465420---
Q gi|254780809|r 271 ISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK-E------ISF---PKNIDFIFIGTKSDLYSTYTE--- 337 (440)
Q Consensus 271 l~DTaGir~t~d~IE~~GI~ra~~~i~~aDlil~v~D~~~~~-~------~~~---~~~~~~i~V~NK~Dl~~~~~~--- 337 (440)
++|+||=. +- |+-.+.=+..+|..|+|+++++.- . +.. +.-.+.++++||+|+.+....
T Consensus 88 ~VD~PGHe---~f-----i~nMi~Gas~~D~alLVVaA~eG~p~pQT~EHl~i~~~lgi~~~iV~lnK~Dlv~~e~~~~~ 159 (410)
T PRK04000 88 FVDAPGHE---TL-----MATMLSGAALMDGAVLVIAANEPCPQPQTKEHLMALDIIGIKNIVIVQNKIDLVSKEKALEN 159 (410)
T ss_pred EEECCCHH---HH-----HHHHHHHHCCCCEEEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHH
T ss_conf 99798879---99-----99998402126679999865778767714999999998099837999962567898999999
Q ss_pred ---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf ---------------0000133332323589999999996322
Q gi|254780809|r 338 ---------------EYDHLISSFTGEGLEELINKIKSILSNK 365 (440)
Q Consensus 338 ---------------~~~~~ISaktg~Gi~~L~~~I~~~l~~~ 365 (440)
.+.+.+||.+|.||+.|+++|.+.+...
T Consensus 160 ~~ei~~~l~g~~~~~~piipvSa~~g~~i~~L~~~l~~~~~~p 202 (410)
T PRK04000 160 YEQIKEFVKGTVAENAPIIPVSALHGVNIDALIEAIEEEIPTP 202 (410)
T ss_pred HHHHHHHHCCCCCCCCCEEEEECCCCCCCCHHHHHHHHHCCCC
T ss_conf 9999998706765689999964777889408999898627787
No 230
>PRK12736 elongation factor Tu; Reviewed
Probab=98.75 E-value=2e-08 Score=78.20 Aligned_cols=109 Identities=20% Similarity=0.242 Sum_probs=75.4
Q ss_pred HHCCCEEEECCCCCCHHHHHHHHHCC---------------HHCCCCCCCCCCEEECCCCCCCCCEEEEEEECCHHCCCC
Q ss_conf 20230243114663188899998552---------------000234546872110001245683589995081000241
Q gi|254780809|r 217 RNGYKIVILGHSNAGKSSLFNALAKK---------------DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 (440)
Q Consensus 217 ~~g~~v~i~G~pN~GKSSL~N~L~~~---------------~~aIVs~~~GTTRD~i~~~~~i~g~~~~l~DTaGir~t~ 281 (440)
+.-++|+++|..++|||||+-+|++. |+.----.-|-|-|.-...+..++..+.++|+||=++-
T Consensus 10 k~~~ni~~~GHVD~GKSTL~g~L~~~~~~~~~~~~~~~~~~D~~~eEr~rGiTid~~~~~~~t~~~~~~~iD~PGH~~f- 88 (394)
T PRK12736 10 KPHVNIGTIGHVDHGKTTLTAAITKVLAERGLAQAKDYASIDAAPEEKARGITINTAHVEYETEKRHYAHVDCPGHADY- 88 (394)
T ss_pred CCEEEEEEEEECCCCHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHCCCCEEEEEEEEEECCCEEEEEEECCCCHHH-
T ss_conf 9874999995128848989989750454506510222233116655624782178418999728836999888972543-
Q ss_pred HHHHHHHHHHHHHHHHHHCCEEECCCCCCHHH------H--HHHCCCC-CCCCCCCCCCCC
Q ss_conf 03566667888998503011020135898566------3--4312898-532222333446
Q gi|254780809|r 282 DIVEKEGIKRTFLEVENADLILLLKEINSKKE------I--SFPKNID-FIFIGTKSDLYS 333 (440)
Q Consensus 282 d~IE~~GI~ra~~~i~~aDlil~v~D~~~~~~------~--~~~~~~~-~i~V~NK~Dl~~ 333 (440)
++-...-+..+|..++|+|+++... + ...-+.+ +|+++||+|+.+
T Consensus 89 -------i~nmi~Ga~~~D~alLVV~A~~G~~~QT~EHl~l~~~lgv~~~IV~vnK~D~v~ 142 (394)
T PRK12736 89 -------VKNMITGAAQMDGAILVVAATDGPMPQTREHILLARQVGVPYIVVFLNKVDLVD 142 (394)
T ss_pred -------HCCEEEEECCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCC
T ss_conf -------110444353466589999858774677999999999829991599998878998
No 231
>PRK12735 elongation factor Tu; Reviewed
Probab=98.75 E-value=4.8e-08 Score=75.62 Aligned_cols=109 Identities=17% Similarity=0.225 Sum_probs=74.9
Q ss_pred HHCCCEEEECCCCCCHHHHHHHHHCC---------------HHCCCCCCCCCCEEECCCCCCCCCEEEEEEECCHHCCCC
Q ss_conf 20230243114663188899998552---------------000234546872110001245683589995081000241
Q gi|254780809|r 217 RNGYKIVILGHSNAGKSSLFNALAKK---------------DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD 281 (440)
Q Consensus 217 ~~g~~v~i~G~pN~GKSSL~N~L~~~---------------~~aIVs~~~GTTRD~i~~~~~i~g~~~~l~DTaGir~t~ 281 (440)
+.-++|+++|..++|||||+-+|++. |+.--.-.-|-|-|.=...+...+..+.++|.||=++-
T Consensus 10 kp~ini~~~GHVD~GKSTL~g~Lt~~~~~~~~~~~~~~~~~D~~~eEr~rGiTid~~~~~fet~~~~~~~iD~PGHe~f- 88 (396)
T PRK12735 10 KPHVNVGTIGHVDHGKTTLTAAITTVLAKKGGGEAKAYDQIDNAPEEKARGITINTSHVEYETANRHYAHVDCPGHADY- 88 (396)
T ss_pred CCEEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHCCCHHHHCCCEEEEEEEEEEECCCEEEEEEECCCHHHH-
T ss_conf 9834999994268858989999861454524643122122116656743773798569999739805999836866887-
Q ss_pred HHHHHHHHHHHHHHHHHHCCEEECCCCCCHH------HHHH--HCCCC-CCCCCCCCCCCC
Q ss_conf 0356666788899850301102013589856------6343--12898-532222333446
Q gi|254780809|r 282 DIVEKEGIKRTFLEVENADLILLLKEINSKK------EISF--PKNID-FIFIGTKSDLYS 333 (440)
Q Consensus 282 d~IE~~GI~ra~~~i~~aDlil~v~D~~~~~------~~~~--~~~~~-~i~V~NK~Dl~~ 333 (440)
|+..+.-+..+|..++|+|+++.. .+.. .-+.+ +++++||+|+.+
T Consensus 89 -------iknMI~Ga~~aD~alLVV~A~~G~~~QTrEHl~l~~~lgv~~~iV~vnK~D~v~ 142 (396)
T PRK12735 89 -------VKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKCDMVD 142 (396)
T ss_pred -------HHHHHHCCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCC
T ss_conf -------766641004256799999868787531699999999839985899998758888
No 232
>COG0532 InfB Translation initiation factor 2 (IF-2; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.73 E-value=2.9e-08 Score=77.13 Aligned_cols=133 Identities=23% Similarity=0.286 Sum_probs=87.7
Q ss_pred CCCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCC-CCEEECCCCCCC---CCEEEEEEECCHHCCCCHHHHHHHHHHHHH
Q ss_conf 2302431146631888999985520002345468-721100012456---835899950810002410356666788899
Q gi|254780809|r 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPG-TTRDVLTIDLDL---EGYLVKISDTAGIRETDDIVEKEGIKRTFL 294 (440)
Q Consensus 219 g~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~G-TTRD~i~~~~~i---~g~~~~l~DTaGir~t~d~IE~~GI~ra~~ 294 (440)
.+-|++.|..-.||+||+-++-+.+.+ +..+| -|--+=-..+.+ ++..++|+||||= + ..---|+.-
T Consensus 5 ~PvVtimGHVDHGKTtLLD~IR~t~Va--~~EaGGITQhIGA~~v~~~~~~~~~itFiDTPGH-e------AFt~mRaRG 75 (509)
T COG0532 5 PPVVTIMGHVDHGKTTLLDKIRKTNVA--AGEAGGITQHIGAYQVPLDVIKIPGITFIDTPGH-E------AFTAMRARG 75 (509)
T ss_pred CCEEEEECCCCCCCCCHHHHHHCCCCC--CCCCCCEEEEEEEEEEEECCCCCCEEEEECCCCH-H------HHHHHHHCC
T ss_conf 988999674358842016667417643--5667850017434999864688652899748957-8------888787557
Q ss_pred HHHHHCCEEECCCCCC---HHHHH-----HHCCCCCCCCCCCCCCCCCCCHH-------------------HHHHHHHHH
Q ss_conf 8503011020135898---56634-----31289853222233344654200-------------------000133332
Q gi|254780809|r 295 EVENADLILLLKEINS---KKEIS-----FPKNIDFIFIGTKSDLYSTYTEE-------------------YDHLISSFT 347 (440)
Q Consensus 295 ~i~~aDlil~v~D~~~---~~~~~-----~~~~~~~i~V~NK~Dl~~~~~~~-------------------~~~~ISakt 347 (440)
.+-+|++++|+|+.+ ++..+ ...+.|+++..||+|..+..+.. ..+.+||+|
T Consensus 76 -a~vtDIaILVVa~dDGv~pQTiEAI~hak~a~vP~iVAiNKiDk~~~np~~v~~el~~~gl~~E~~gg~v~~VpvSA~t 154 (509)
T COG0532 76 -ASVTDIAILVVAADDGVMPQTIEAINHAKAAGVPIVVAINKIDKPEANPDKVKQELQEYGLVPEEWGGDVIFVPVSAKT 154 (509)
T ss_pred -CCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHCCCCHHHCCCCEEEEEEECCC
T ss_conf -7544579999975678566179999999877999899985432799887899998877798876618814999743247
Q ss_pred HHHHHHHHHHHHHH
Q ss_conf 32358999999999
Q gi|254780809|r 348 GEGLEELINKIKSI 361 (440)
Q Consensus 348 g~Gi~~L~~~I~~~ 361 (440)
|+|+++|++.|.-.
T Consensus 155 g~Gi~eLL~~ill~ 168 (509)
T COG0532 155 GEGIDELLELILLL 168 (509)
T ss_pred CCCHHHHHHHHHHH
T ss_conf 87979999999988
No 233
>PRK00741 prfC peptide chain release factor 3; Provisional
Probab=98.73 E-value=9.1e-08 Score=73.69 Aligned_cols=107 Identities=21% Similarity=0.252 Sum_probs=68.8
Q ss_pred CCEEEECCCCCCHHHHHHHHHCCHHCC-----CCC--CCC-CCEEECC-------------CCCCCCCEEEEEEECCHHC
Q ss_conf 302431146631888999985520002-----345--468-7211000-------------1245683589995081000
Q gi|254780809|r 220 YKIVILGHSNAGKSSLFNALAKKDVAI-----VTD--IPG-TTRDVLT-------------IDLDLEGYLVKISDTAGIR 278 (440)
Q Consensus 220 ~~v~i~G~pN~GKSSL~N~L~~~~~aI-----Vs~--~~G-TTRD~i~-------------~~~~i~g~~~~l~DTaGir 278 (440)
-+++|+|.|-+||+||--+|+-.--+| |.. .-| ||-|+-+ ..+.|+|+.+.|+||||.-
T Consensus 11 RniaIi~H~dAGKTTLtE~lL~~~GaI~~~G~V~~~~~~~~~~sD~~~~E~~RgiSI~ssv~~~e~~~~~iNliDTPGh~ 90 (526)
T PRK00741 11 RTFAIISHPDAGKTTLTEKLLLFGGAIQEAGTVKGRKSGRHATSDWMEMEKQRGISVTSSVMQFPYRDCLINLLDTPGHE 90 (526)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHCCCCCCCCEEECCCCCCCCCCCCCHHHHHCCCEEECCEEEEEECCEEEEEEECCCCH
T ss_conf 77999937898989999999974675244846631467886467885889975964861517786789899999098946
Q ss_pred CCCHHHHHHHHHHHHHHHHHHCCEEECCCCCCHH-------H-HHHHCCCCCCCCCCCCCCCCC
Q ss_conf 2410356666788899850301102013589856-------6-343128985322223334465
Q gi|254780809|r 279 ETDDIVEKEGIKRTFLEVENADLILLLKEINSKK-------E-ISFPKNIDFIFIGTKSDLYST 334 (440)
Q Consensus 279 ~t~d~IE~~GI~ra~~~i~~aDlil~v~D~~~~~-------~-~~~~~~~~~i~V~NK~Dl~~~ 334 (440)
+- .+. +...+.-+|-.++|+|+.+-- + .....++|.++.+||+|....
T Consensus 91 DF---~~e-----~~raL~a~D~Av~Vida~~GVe~qTe~~w~~~~~~~iP~i~FINKmDR~~a 146 (526)
T PRK00741 91 DF---SED-----TYRTLTAVDSALMVIDAAKGVEPQTRKLMEVCRLRDTPIFTFINKLDRDGR 146 (526)
T ss_pred HH---HHH-----HHHHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCC
T ss_conf 77---899-----999998737599999777552333689999988639988999965676789
No 234
>PTZ00336 elongation factor 1-alpha; Provisional
Probab=98.72 E-value=4.3e-08 Score=75.97 Aligned_cols=105 Identities=25% Similarity=0.323 Sum_probs=72.2
Q ss_pred HCCCEEEECCCCCCHHHHHHHHHCC------------------------HHCCCCC------CCCCCEEECCCCCCCCCE
Q ss_conf 0230243114663188899998552------------------------0002345------468721100012456835
Q gi|254780809|r 218 NGYKIVILGHSNAGKSSLFNALAKK------------------------DVAIVTD------IPGTTRDVLTIDLDLEGY 267 (440)
Q Consensus 218 ~g~~v~i~G~pN~GKSSL~N~L~~~------------------------~~aIVs~------~~GTTRD~i~~~~~i~g~ 267 (440)
.-++|+++|..++|||||+-+|+-. +-|.+.| .-|-|-|+-...+.....
T Consensus 6 ~~lni~~~GhVD~GKSTL~G~Ll~~~~~v~~~~l~~~~~~~~~~g~~s~~~a~~~D~~~~Er~rGiTid~~~~~f~t~~~ 85 (449)
T PTZ00336 6 VHMNLVVVGHVDAGKSTATGHLIYKCGGIDKRTIEKFEKEAAEIGKASFKYAWVLDKLKAERERGITIDIALWKFESPKS 85 (449)
T ss_pred CEEEEEEEECCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHCCCHHHHCCCEEEEEEEEEEECCCE
T ss_conf 64399999277896888899999874884789999999999871875143254512772232287589867999974984
Q ss_pred EEEEEECCHHCCCCHHHHHHHHHHHHHHHHHHCCEEECCCCCCH-------------HHHHH--HCCC-CCCCCCCCCC
Q ss_conf 89995081000241035666678889985030110201358985-------------66343--1289-8532222333
Q gi|254780809|r 268 LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK-------------KEISF--PKNI-DFIFIGTKSD 330 (440)
Q Consensus 268 ~~~l~DTaGir~t~d~IE~~GI~ra~~~i~~aDlil~v~D~~~~-------------~~~~~--~~~~-~~i~V~NK~D 330 (440)
.+.++|+||=++- ++....-+..||+.++|+|+.+. ..... .-+. .+++++||+|
T Consensus 86 ~~~iiD~PGH~~f--------i~nmi~Gas~aD~aiLVVdA~~G~~e~g~~~~gQTreHl~i~~~Lgv~~iiV~vNKmD 156 (449)
T PTZ00336 86 VFTIIDAPGHRDF--------IKNMITGTSQADAAILMIDSTHGGFEAGISKDGQTREHALLAFTLGVKQMVVCCNKMD 156 (449)
T ss_pred EEEEEECCCHHHH--------HHHHHHHHCCCCEEEEEEECCCCCEECCCCCCCCCHHHHHHHHHCCCCEEEEEEECCC
T ss_conf 8999868946888--------9999976500676799998787741035566775399999998669977999986201
No 235
>PRK00049 elongation factor Tu; Reviewed
Probab=98.70 E-value=7.1e-08 Score=74.42 Aligned_cols=109 Identities=18% Similarity=0.247 Sum_probs=75.0
Q ss_pred HHCCCEEEECCCCCCHHHHHHHHHCC----------------HHCCCCCCCCCCEEECCCCCCCCCEEEEEEECCHHCCC
Q ss_conf 20230243114663188899998552----------------00023454687211000124568358999508100024
Q gi|254780809|r 217 RNGYKIVILGHSNAGKSSLFNALAKK----------------DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 (440)
Q Consensus 217 ~~g~~v~i~G~pN~GKSSL~N~L~~~----------------~~aIVs~~~GTTRD~i~~~~~i~g~~~~l~DTaGir~t 280 (440)
+.-++|+++|...+|||||+-+|++. |+.--.-.-|-|-|.-...+..++..+.++|+||=++
T Consensus 10 kp~~ni~~~GHVD~GKSTL~g~Lt~~l~~~~g~~~~~~~~~~D~~~eEr~rGiTid~~~~~~~t~~~~~~~iD~PGH~~- 88 (397)
T PRK00049 10 KPHVNVGTIGHVDHGKTTLTAAITKVLAKKYGGAEAKAYDQIDNAPEEKARGITINTAHVEYETEKRHYAHVDCPGHAD- 88 (397)
T ss_pred CCEEEEEEEECCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCHHHHHCCCEEEEEEEEEECCCCEEEEECCCCHHH-
T ss_conf 9832999991258889999999986666543853100133302576676258169987999972881499951786388-
Q ss_pred CHHHHHHHHHHHHHHHHHHCCEEECCCCCCHH------HHHH--HCCCC-CCCCCCCCCCCC
Q ss_conf 10356666788899850301102013589856------6343--12898-532222333446
Q gi|254780809|r 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKK------EISF--PKNID-FIFIGTKSDLYS 333 (440)
Q Consensus 281 ~d~IE~~GI~ra~~~i~~aDlil~v~D~~~~~------~~~~--~~~~~-~i~V~NK~Dl~~ 333 (440)
- |+-...-+..+|+.++|+|+++-. .+.. .-+.+ .|+++||+|+.+
T Consensus 89 --f-----iknmI~Ga~~~D~alLVV~A~~G~~~QT~EHl~l~~~LGv~~~iV~vnK~D~v~ 143 (397)
T PRK00049 89 --Y-----VKNMITGAAQMDGAILVVSAADGPMPQTREHILLARQVGVPYIVVFLNKCDMVD 143 (397)
T ss_pred --H-----HHHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCEEEEEEECCCCCC
T ss_conf --8-----999873012156799999748886652899999999809982799998668888
No 236
>pfam09439 SRPRB Signal recognition particle receptor beta subunit. The beta subunit of the signal recognition particle receptor (SRP) is a transmembrane GTPase which anchors the alpha subunit to the endoplasmic reticulum membrane.
Probab=98.69 E-value=6.1e-08 Score=74.87 Aligned_cols=111 Identities=19% Similarity=0.312 Sum_probs=69.4
Q ss_pred CCCEEEECCCCCCHHHHHHHHHCCHH-CCCCCC-CCCCEEECCCCCCCCCEEEEEEECCHHCCCCHHHHHHHHHHHHHHH
Q ss_conf 23024311466318889999855200-023454-6872110001245683589995081000241035666678889985
Q gi|254780809|r 219 GYKIVILGHSNAGKSSLFNALAKKDV-AIVTDI-PGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296 (440)
Q Consensus 219 g~~v~i~G~pN~GKSSL~N~L~~~~~-aIVs~~-~GTTRD~i~~~~~i~g~~~~l~DTaGir~t~d~IE~~GI~ra~~~i 296 (440)
-+.|.|+|+.|+||.+||+.|...+. .-|+.+ |..+ +......|..+.++|+||-..-... ....++..
T Consensus 3 ~ptvLllGl~~sGKT~Lf~~L~~~~~~~T~tS~~~n~~----~~~~~~~~~~~~lvD~PGh~klR~~-----~~~~~~~~ 73 (181)
T pfam09439 3 QPAVIIAGLCDSGKTSLFTLLTTGSVRKTVTSQEPSAA----YKYMNNKGNSLTLIDFPGHVKLRYK-----LLETLKDS 73 (181)
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCCCEECCCCCCCE----EEEECCCCCEEEEEECCCCHHHHHH-----HHHHHHHH
T ss_conf 88699986899989999999975994875888678640----6875168966899988996899999-----99864300
Q ss_pred HHHCCEEECCCCC-CHHHH--------H-------HHCCCCCCCCCCCCCCCCCCCHH
Q ss_conf 0301102013589-85663--------4-------31289853222233344654200
Q gi|254780809|r 297 ENADLILLLKEIN-SKKEI--------S-------FPKNIDFIFIGTKSDLYSTYTEE 338 (440)
Q Consensus 297 ~~aDlil~v~D~~-~~~~~--------~-------~~~~~~~i~V~NK~Dl~~~~~~~ 338 (440)
..+..|+||+|++ .+..+ . ..+..|++++.||.|+.......
T Consensus 74 ~~~~gIVfVVDS~~~~~~l~~~Ae~Ly~iL~~~~~~~~~vPvLI~cNKqDl~~A~~~~ 131 (181)
T pfam09439 74 SSLRGLVFVVDSTAFPKEVTDTAEFLYDILSITELLKNGIDILIACNKQEIFTARPPK 131 (181)
T ss_pred CCCEEEEEEEECCCCHHHHHHHHHHHHHHHHCHHHCCCCCCEEEEEECCCCCCCCCHH
T ss_conf 2644999999786656679999999999984454336899789997374633577999
No 237
>PRK13351 elongation factor G; Reviewed
Probab=98.68 E-value=1.8e-06 Score=64.77 Aligned_cols=104 Identities=19% Similarity=0.156 Sum_probs=71.2
Q ss_pred CEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCC------EEEC-------------CCCCCCCCEEEEEEECCHHCCCC
Q ss_conf 0243114663188899998552000234546872------1100-------------01245683589995081000241
Q gi|254780809|r 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT------RDVL-------------TIDLDLEGYLVKISDTAGIRETD 281 (440)
Q Consensus 221 ~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTT------RD~i-------------~~~~~i~g~~~~l~DTaGir~t~ 281 (440)
.|+|+|..-+||+||.-+|+-...+| +.+|.. -|+. -..+.|+++.+.|+||||--+-.
T Consensus 10 Ni~IiaHvd~GKTTL~d~Ll~~~g~i--~~~g~v~~g~t~~D~~~~E~eRgITikss~~sl~~~~~~iNlIDTPGHvDF~ 87 (687)
T PRK13351 10 NIGIMAHIDAGKTTLTERILFYTGKI--HKMGSVEDGNTVSDWMPQEQERGISIESAAATCDWKNHRINLIDTPGHIDFT 87 (687)
T ss_pred EEEEECCCCCCHHHHHHHHHHHCCCC--CCCCCCCCCCCCCCCCHHHHHCCCCEEEEEEEEEECCEEEEEEECCCCCCHH
T ss_conf 89999179989899999999974998--7587154787447882999974987762159998899899998097974309
Q ss_pred HHHHHHHHHHHHHHHHHHCCEEECCCCCCHH-------H-HHHHCCCCCCCCCCCCCCCCC
Q ss_conf 0356666788899850301102013589856-------6-343128985322223334465
Q gi|254780809|r 282 DIVEKEGIKRTFLEVENADLILLLKEINSKK-------E-ISFPKNIDFIFIGTKSDLYST 334 (440)
Q Consensus 282 d~IE~~GI~ra~~~i~~aDlil~v~D~~~~~-------~-~~~~~~~~~i~V~NK~Dl~~~ 334 (440)
++++ .++.-+|-.|+|+|+.+.- + .....++|.++++||+|....
T Consensus 88 ~Ev~--------~aLr~~DgallVVDaveGv~~qT~~v~r~a~~~~lp~il~iNK~DR~~~ 140 (687)
T PRK13351 88 GEVE--------RSLRVLDGAVVVIDAVTGVQPQTETVWEQADKYKIPRLIFINKMDRVGA 140 (687)
T ss_pred HHHH--------HHHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCC
T ss_conf 9999--------9999878689999789998688999999999879985999979778998
No 238
>TIGR00750 lao LAO/AO transport system ATPase; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli K-12, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase..
Probab=98.66 E-value=7.1e-08 Score=74.45 Aligned_cols=156 Identities=22% Similarity=0.282 Sum_probs=95.8
Q ss_pred CCEEEECCCCCCHHHHHHHHH------CCHHCCCCCCCCCC---------------------------------------
Q ss_conf 302431146631888999985------52000234546872---------------------------------------
Q gi|254780809|r 220 YKIVILGHSNAGKSSLFNALA------KKDVAIVTDIPGTT--------------------------------------- 254 (440)
Q Consensus 220 ~~v~i~G~pN~GKSSL~N~L~------~~~~aIVs~~~GTT--------------------------------------- 254 (440)
..|.|.|.|-||||||+.+|. |...|++.==|+.|
T Consensus 39 ~~vG~TG~PGaGKSTl~~~l~~~lrRrG~~VaViAvDP~SPfTGGsiLGDr~Rm~~~asrkqlW~dPg~FIRs~ptrG~l 118 (333)
T TIGR00750 39 HVVGITGVPGAGKSTLVEKLIMELRRRGLKVAVIAVDPSSPFTGGSILGDRLRMQRLASRKQLWTDPGVFIRSMPTRGSL 118 (333)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCEECCCCCCCCH
T ss_conf 78766468888577799999899976597689998879759755145456887754422223322898567677666752
Q ss_pred -------EEECCCCCCCCCEEEEEEECCHHCCCCHHHHHHHHHHHHHHHHHHCCEEECCCCCCHHHHHHHCC----CCCC
Q ss_conf -------11000124568358999508100024103566667888998503011020135898566343128----9853
Q gi|254780809|r 255 -------RDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKN----IDFI 323 (440)
Q Consensus 255 -------RD~i~~~~~i~g~~~~l~DTaGir~t~d~IE~~GI~ra~~~i~~aDlil~v~D~~~~~~~~~~~~----~~~i 323 (440)
||.|.- ++=-|+-+.|+-|.|.-+++ ..-++-||.++.|.=+..-++++.+|. .--|
T Consensus 119 GGls~at~~~~~l-ldA~G~DVI~vETVGVGQSE-----------Vdi~~~aDT~v~v~~pg~GDd~Q~iKaG~mEiaDI 186 (333)
T TIGR00750 119 GGLSKATRELVKL-LDAAGYDVILVETVGVGQSE-----------VDIINMADTFVVVTIPGTGDDVQGIKAGVMEIADI 186 (333)
T ss_pred HHHHHHHHHHHHH-HHHCCCCEEEEEEECCCHHH-----------HHHHHHHCEEEEEECCCCCCHHHHHHHHHHEEEEE
T ss_conf 5787999999999-98638987999841575248-----------78873415058985488783466665443023248
Q ss_pred CCCCCCCCCCCCC-H-----------------------------------------HHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 2222333446542-0-----------------------------------------000013333232358999999999
Q gi|254780809|r 324 FIGTKSDLYSTYT-E-----------------------------------------EYDHLISSFTGEGLEELINKIKSI 361 (440)
Q Consensus 324 ~V~NK~Dl~~~~~-~-----------------------------------------~~~~~ISaktg~Gi~~L~~~I~~~ 361 (440)
+|+||.|...... . ++.+..||.+|+||++|.++|.++
T Consensus 187 ~VVNKaD~~~a~~v~~~a~~~l~l~~esvqmlsqmthadearvq~G~~~~r~~gW~Ppv~~tsA~~G~Gi~EL~daI~eH 266 (333)
T TIGR00750 187 YVVNKADGEGAEEVKTLARLMLALDLESVQMLSQMTHADEARVQKGEIYRREKGWRPPVLKTSAVEGRGIDELWDAIEEH 266 (333)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHCCCCCCEEEEECCCCCCCHHHHHHHHHH
T ss_conf 78816887665899999999888888899999865333344430265511010589963887335688716789999999
Q ss_pred HHHHCCCCCCCEEHHHHHHHHHHHHHHHH
Q ss_conf 63220358863201489999999999999
Q gi|254780809|r 362 LSNKFKKLPFSIPSHKRHLYHLSQTVRYL 390 (440)
Q Consensus 362 l~~~~~~~~~~i~~~~Rq~~~L~~a~~~L 390 (440)
..-... ...+...|+.+..+......
T Consensus 267 ~~~l~~---~G~~~~~Rr~r~~~~~~~~~ 292 (333)
T TIGR00750 267 KKFLTE---SGLLEEKRRERSVEELKKLV 292 (333)
T ss_pred HHHHHH---CCCHHHHHHHHHHHHHHHHH
T ss_conf 999986---36067999999999999999
No 239
>KOG0395 consensus
Probab=98.65 E-value=3e-08 Score=77.05 Aligned_cols=135 Identities=25% Similarity=0.334 Sum_probs=95.2
Q ss_pred CCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCCEEECCCCCCCCCE--EEEEEECCHHCCCCHHHHHHHHHHHHHHHH
Q ss_conf 302431146631888999985520002345468721100012456835--899950810002410356666788899850
Q gi|254780809|r 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY--LVKISDTAGIRETDDIVEKEGIKRTFLEVE 297 (440)
Q Consensus 220 ~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTTRD~i~~~~~i~g~--~~~l~DTaGir~t~d~IE~~GI~ra~~~i~ 297 (440)
.+|+++|.|+||||+|...+++..- +.++.+|.=|.-+..+.++|- .+.++||||-.+... .+ -..+.
T Consensus 4 ~kvvvlG~~gVGKSal~~qf~~~~f--~~~y~ptied~y~k~~~v~~~~~~l~ilDt~g~~~~~~------~~--~~~~~ 73 (196)
T KOG0395 4 YKVVVLGAGGVGKSALTIQFLTGRF--VEDYDPTIEDSYRKELTVDGEVCMLEILDTAGQEEFSA------MR--DLYIR 73 (196)
T ss_pred EEEEEECCCCCCCCCEEEEECCCCC--CCCCCCCCCCCEEEEEEECCEEEEEEEEECCCCCCCHH------HH--HHHHH
T ss_conf 4799977898885305789635755--44347976763159999899788999982888534768------88--87755
Q ss_pred HHCCEEECCCCCCHHHHHH-------------HCCCCCCCCCCCCCCCCCCCHH-------------HHHHHHHHHHHHH
Q ss_conf 3011020135898566343-------------1289853222233344654200-------------0001333323235
Q gi|254780809|r 298 NADLILLLKEINSKKEISF-------------PKNIDFIFIGTKSDLYSTYTEE-------------YDHLISSFTGEGL 351 (440)
Q Consensus 298 ~aDlil~v~D~~~~~~~~~-------------~~~~~~i~V~NK~Dl~~~~~~~-------------~~~~ISaktg~Gi 351 (440)
.+|-.+.|++.+++..... ....|+++|.||+||....... .-+.+||+.+.++
T Consensus 74 ~~~gF~lVysitd~~SF~~~~~l~~~I~r~~~~~~~PivlVGNK~Dl~~~R~V~~eeg~~la~~~~~~f~E~Sak~~~~v 153 (196)
T KOG0395 74 NGDGFLLVYSITDRSSFEEAKQLREQILRVKGRDDVPIILVGNKCDLERERQVSEEEGKALARSWGCAFIETSAKLNYNV 153 (196)
T ss_pred CCCEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCHHHCCCCHHHHHHHHHHHCCCEEEEECCCCCCH
T ss_conf 48689999989888899999999999986407677887999885553230424399999999970996799751447588
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 8999999999632
Q gi|254780809|r 352 EELINKIKSILSN 364 (440)
Q Consensus 352 ~~L~~~I~~~l~~ 364 (440)
+++...+...+..
T Consensus 154 ~~~F~~L~r~~~~ 166 (196)
T KOG0395 154 DEVFYELVREIRL 166 (196)
T ss_pred HHHHHHHHHHHHH
T ss_conf 9999999999985
No 240
>TIGR01394 TypA_BipA GTP-binding protein TypA; InterPro: IPR006298 This bacterial (and Arabidopsis) protein, termed TypA or BipA, is a GTP-binding protein. It is phosphorylated on a tyrosine residue under some cellular conditions. Mutants show altered regulation of some pathways, but the precise function is unknown.; GO: 0005525 GTP binding, 0005622 intracellular.
Probab=98.64 E-value=5.3e-08 Score=75.29 Aligned_cols=143 Identities=24% Similarity=0.286 Sum_probs=98.5
Q ss_pred CEEEECCCCCCHHHHHHHHHCCHH-CCCC-CCC---------------CCCEEECC--CCCCCCC----EEEEEEECCHH
Q ss_conf 024311466318889999855200-0234-546---------------87211000--1245683----58999508100
Q gi|254780809|r 221 KIVILGHSNAGKSSLFNALAKKDV-AIVT-DIP---------------GTTRDVLT--IDLDLEG----YLVKISDTAGI 277 (440)
Q Consensus 221 ~v~i~G~pN~GKSSL~N~L~~~~~-aIVs-~~~---------------GTTRD~i~--~~~~i~g----~~~~l~DTaGi 277 (440)
.||||=..--||.||.-.||.+-- ..=. ... |=| ++. ..+.|+| +.+.++||||=
T Consensus 3 NIAIIAHVDHGKTTLVD~LL~Qsgf~f~~~~~~~~ER~MDSNDLErERGIT--ILaKNTav~y~g~dG~~~INIvDTPGH 80 (609)
T TIGR01394 3 NIAIIAHVDHGKTTLVDALLKQSGFTFRADNEAVAERVMDSNDLERERGIT--ILAKNTAVRYNGKDGVTKINIVDTPGH 80 (609)
T ss_pred CEEEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHCCCC--CCCEEEEEEECCCCCEEEEEEEECCCC
T ss_conf 189998806994368988888765886415883213540676521001552--013003662528897189977816898
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHCCEEECCCCCCHHHH--------HHHCCCCCCCCCCCCCCCCCCCHHH----------
Q ss_conf 0241035666678889985030110201358985663--------4312898532222333446542000----------
Q gi|254780809|r 278 RETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEI--------SFPKNIDFIFIGTKSDLYSTYTEEY---------- 339 (440)
Q Consensus 278 r~t~d~IE~~GI~ra~~~i~~aDlil~v~D~~~~~~~--------~~~~~~~~i~V~NK~Dl~~~~~~~~---------- 339 (440)
-+--.+||+. +.=.|-+|+|+|+++-+.. .+..+.+.|+|+||+|..+..+.+.
T Consensus 81 ADFGGEVERv--------L~MVDGvlLlVDA~EGPMPQTrFVL~KAL~~gLkPIVViNKiDrp~ARP~eV~d~vFDLF~~ 152 (609)
T TIGR01394 81 ADFGGEVERV--------LGMVDGVLLLVDASEGPMPQTRFVLKKALELGLKPIVVINKIDRPSARPDEVVDEVFDLFIE 152 (609)
T ss_pred CCCCCEEEEE--------CEEEEEEEEEEECCCCCCCCCHHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 8788658873--------30240589998578889885347899999568936999713478878837887578788885
Q ss_pred -----------HHHHHHHHH---------------HHHHHHHHHHHHHHHHHCCCCCCCE
Q ss_conf -----------001333323---------------2358999999999632203588632
Q gi|254780809|r 340 -----------DHLISSFTG---------------EGLEELINKIKSILSNKFKKLPFSI 373 (440)
Q Consensus 340 -----------~~~ISaktg---------------~Gi~~L~~~I~~~l~~~~~~~~~~i 373 (440)
.+|=||+.| +.|+.|.++|.+.++....+.+.++
T Consensus 153 LgA~deQLDFP~vYASa~~G~A~l~~~~dg~~~~~~~m~PLFd~I~~hvPaP~~~~d~Pl 212 (609)
T TIGR01394 153 LGADDEQLDFPIVYASARAGWASLDKDKDGLDDDSEDMAPLFDAILRHVPAPKGDLDEPL 212 (609)
T ss_pred CCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCH
T ss_conf 388800101256766523672014466577887220178999898640688898887624
No 241
>PRK12739 elongation factor G; Reviewed
Probab=98.63 E-value=2.5e-06 Score=63.71 Aligned_cols=105 Identities=19% Similarity=0.149 Sum_probs=69.4
Q ss_pred CEEEECCCCCCHHHHHHHHHCCHHCC--CCCC-CCCC-EEECC-------------CCCCCCCEEEEEEECCHHCCCCHH
Q ss_conf 02431146631888999985520002--3454-6872-11000-------------124568358999508100024103
Q gi|254780809|r 221 KIVILGHSNAGKSSLFNALAKKDVAI--VTDI-PGTT-RDVLT-------------IDLDLEGYLVKISDTAGIRETDDI 283 (440)
Q Consensus 221 ~v~i~G~pN~GKSSL~N~L~~~~~aI--Vs~~-~GTT-RD~i~-------------~~~~i~g~~~~l~DTaGir~t~d~ 283 (440)
.|+|+|..-+||+||.-+|+-..-.| ..+. .|+| -|+.+ ..+.|+++.+.|+||||--+-.++
T Consensus 12 Ni~IvaHvd~GKTTL~d~LL~~~g~i~~~g~v~~g~~~~D~~~~E~eRgITi~ss~~s~~~~~~~iNLIDTPGHvDF~~E 91 (693)
T PRK12739 12 NIGIMAHIDAGKTTTTERILFYTGKIHKIGEVHDGAATMDWMEQEQERGITITSAATTAFWKDHRINIIDTPGHVDFTIE 91 (693)
T ss_pred EEEEEECCCCCHHHHHHHHHHHCCCCCCCCEECCCCCCCCCCHHHHHCCCCEEECEEEEEECCEEEEEEECCCCCHHHHH
T ss_conf 99999079989899999999976985657334389756878099987598674552778459989999949697405899
Q ss_pred HHHHHHHHHHHHHHHHCCEEECCCCCCHH--------HHHHHCCCCCCCCCCCCCCCC
Q ss_conf 56666788899850301102013589856--------634312898532222333446
Q gi|254780809|r 284 VEKEGIKRTFLEVENADLILLLKEINSKK--------EISFPKNIDFIFIGTKSDLYS 333 (440)
Q Consensus 284 IE~~GI~ra~~~i~~aDlil~v~D~~~~~--------~~~~~~~~~~i~V~NK~Dl~~ 333 (440)
++. ++.-+|-.++|+|+.+.- ......+.|.++++||+|...
T Consensus 92 V~~--------alrv~DgalvvVDaveGV~~qT~~v~rqa~~~~lp~il~iNKiDR~~ 141 (693)
T PRK12739 92 VER--------SLRVLDGAVAVFDAVSGVEPQSETVWRQADKYGVPRIVFVNKMDRIG 141 (693)
T ss_pred HHH--------HHHHHCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCC
T ss_conf 999--------99984879999978988767799999999986989699997978899
No 242
>PRK05124 cysN sulfate adenylyltransferase subunit 1; Provisional
Probab=98.61 E-value=7.7e-08 Score=74.18 Aligned_cols=128 Identities=21% Similarity=0.223 Sum_probs=87.2
Q ss_pred HHCCCEEEECCCCCCHHHHHHHHHCCHH--------------------------CCCCC------CCCCCEEECCCCCCC
Q ss_conf 2023024311466318889999855200--------------------------02345------468721100012456
Q gi|254780809|r 217 RNGYKIVILGHSNAGKSSLFNALAKKDV--------------------------AIVTD------IPGTTRDVLTIDLDL 264 (440)
Q Consensus 217 ~~g~~v~i~G~pN~GKSSL~N~L~~~~~--------------------------aIVs~------~~GTTRD~i~~~~~i 264 (440)
++-++++.+|..-+|||||+-+|+-.-. |.+.| .-|-|-|+-...+..
T Consensus 25 k~~l~~v~~GhVD~GKSTl~GrlL~~~~~v~~~~~~~~~~~s~~~g~~~~~~~~a~l~D~l~~ERe~GiTIdva~~~f~t 104 (475)
T PRK05124 25 KSLLRFLTCGSVDDGKSTLIGRLLHDTKQIYEDQLASLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFST 104 (475)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEEECCCHHHHHCCCEEEEEEEEEEC
T ss_conf 98579999905579778888999998199788999999999998288777222444205998898669716956789953
Q ss_pred CCEEEEEEECCHHCCCCHHHHHHHHHHHHHHHHHHCCEEECCCCCCHHH------HH---HHCCCCCCCCCCCCCCCCCC
Q ss_conf 8358999508100024103566667888998503011020135898566------34---31289853222233344654
Q gi|254780809|r 265 EGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE------IS---FPKNIDFIFIGTKSDLYSTY 335 (440)
Q Consensus 265 ~g~~~~l~DTaGir~t~d~IE~~GI~ra~~~i~~aDlil~v~D~~~~~~------~~---~~~~~~~i~V~NK~Dl~~~~ 335 (440)
+...|.++|+||=++- ++....-+..||+.++|+|+..... .. .+.=+.+|+++||+|+.+..
T Consensus 105 ~~r~~~i~DaPGH~~f--------~~NMitGas~aD~aiLvVdA~~G~~~QTreH~~i~~llGI~~iIVaVNKMDlV~~~ 176 (475)
T PRK05124 105 EKRKFIIADTPGHEQY--------TRNMATGASTCDLAILLIDARKGVLDQTRRHSFIATLLGIKHLVVAVNKMDLVDYS 176 (475)
T ss_pred CCEEEEEEECCCHHHH--------HHHHHHHHHHCCEEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEEECHHCCCCC
T ss_conf 8768999737963877--------88898888767889999989889478889999999865998599998504313543
Q ss_pred CHHH---------------------HHHHHHHHHHHHH
Q ss_conf 2000---------------------0013333232358
Q gi|254780809|r 336 TEEY---------------------DHLISSFTGEGLE 352 (440)
Q Consensus 336 ~~~~---------------------~~~ISaktg~Gi~ 352 (440)
...+ .+.|||.+|+|+-
T Consensus 177 ~~~f~~I~~e~~~~l~~~g~~~~v~~IPISal~GdNIv 214 (475)
T PRK05124 177 EEVFERIREDYLTFAEQLPGNLDIRFVPLSALEGDNVV 214 (475)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCEEECCCCCCCCCC
T ss_conf 99999999999999997499888507754134576762
No 243
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=98.61 E-value=4.2e-08 Score=76.00 Aligned_cols=129 Identities=20% Similarity=0.203 Sum_probs=86.8
Q ss_pred HHCCCEEEECCCCCCHHHHHHHHHCCHHCC----------CCCC----------------------CCCCEEECCCCCCC
Q ss_conf 202302431146631888999985520002----------3454----------------------68721100012456
Q gi|254780809|r 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAI----------VTDI----------------------PGTTRDVLTIDLDL 264 (440)
Q Consensus 217 ~~g~~v~i~G~pN~GKSSL~N~L~~~~~aI----------Vs~~----------------------~GTTRD~i~~~~~i 264 (440)
++-++++.+|-.-.|||||+-+|+-.-.+| .|.. -|-|-|+-...+..
T Consensus 5 k~~l~~~~~G~VD~GKSTliGrlL~dt~~i~~d~~~~~~~~s~~~g~~~~~~~~a~l~D~l~~EreqGiTIDva~~~F~t 84 (613)
T PRK05506 5 KTLLRFITCGSVDDGKSTLIGRLLYDSKMIFEDQLAALERDSKKVGTQGDEIDLALLVDGLAAEREQGITIDVAYRYFST 84 (613)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCEEEEEECCCCHHHHHCCCEEEEEEEEEEC
T ss_conf 76258999936679788898899998199678999999999998189888603544214888898559716856778843
Q ss_pred CCEEEEEEECCHHCCCCHHHHHHHHHHHHHHHHHHCCEEECCCCCCHHH---------HHHHCCCCCCCCCCCCCCCCCC
Q ss_conf 8358999508100024103566667888998503011020135898566---------3431289853222233344654
Q gi|254780809|r 265 EGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE---------ISFPKNIDFIFIGTKSDLYSTY 335 (440)
Q Consensus 265 ~g~~~~l~DTaGir~t~d~IE~~GI~ra~~~i~~aDlil~v~D~~~~~~---------~~~~~~~~~i~V~NK~Dl~~~~ 335 (440)
....|.++||||-++- ++.....+..||+.++|+|+..... ...+.-+.+|+++||+||.+..
T Consensus 85 ~~r~~~i~DaPGH~~y--------~rNMitgAs~ad~AilliDa~~G~~~QTrrH~~i~~llGI~~iivaVNKMDlV~y~ 156 (613)
T PRK05506 85 PKRKFIVADTPGHEQY--------TRNMATGASTADLAIILVDARKGVLTQTRRHSFIASLLGIRHIVLAVNKMDLVDYD 156 (613)
T ss_pred CCEEEEEECCCCHHHH--------HHHHHHHHHHCCEEEEEEECCCCCHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCH
T ss_conf 8705999428967989--------98999878653879999988879515518999999872987599998520124781
Q ss_pred CHHH--------------------HHHHHHHHHHHHHH
Q ss_conf 2000--------------------00133332323589
Q gi|254780809|r 336 TEEY--------------------DHLISSFTGEGLEE 353 (440)
Q Consensus 336 ~~~~--------------------~~~ISaktg~Gi~~ 353 (440)
...+ .+.|||.+|+++-.
T Consensus 157 ~~~f~~I~~~~~~~~~~l~~~~~~~IPISAl~GDNVv~ 194 (613)
T PRK05506 157 QEVFDRIVADYLAFAAKLGLTDVTFIPISALKGDNVVT 194 (613)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCCCEEEE
T ss_conf 99999999999999965799887599673574874767
No 244
>cd01885 EF2 EF2 (for archaea and eukarya). Translocation requires hydrolysis of a molecule of GTP and is mediated by EF-G in bacteria and by eEF2 in eukaryotes. The eukaryotic elongation factor eEF2 is a GTPase involved in the translocation of the peptidyl-tRNA from the A site to the P site on the ribosome. The 95-kDa protein is highly conserved, with 60% amino acid sequence identity between the human and yeast proteins. Two major mechanisms are known to regulate protein elongation and both involve eEF2. First, eEF2 can be modulated by reversible phosphorylation. Increased levels of phosphorylated eEF2 reduce elongation rates presumably because phosphorylated eEF2 fails to bind the ribosomes. Treatment of mammalian cells with agents that raise the cytoplasmic Ca2+ and cAMP levels reduce elongation rates by activating the kinase responsible for phosphorylating eEF2. In contrast, treatment of cells with insulin increases elongation rates by promoting eEF2 dephosphorylation. Seco
Probab=98.60 E-value=1e-07 Score=73.27 Aligned_cols=104 Identities=20% Similarity=0.269 Sum_probs=71.6
Q ss_pred CEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCCE--EECCC-----------------------CCCCCCEEEEEEECC
Q ss_conf 02431146631888999985520002345468721--10001-----------------------245683589995081
Q gi|254780809|r 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR--DVLTI-----------------------DLDLEGYLVKISDTA 275 (440)
Q Consensus 221 ~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTTR--D~i~~-----------------------~~~i~g~~~~l~DTa 275 (440)
.|+|+|....||+||.-+|+...-.|-...+|.+| |.... ....+++.+.|+|||
T Consensus 2 Ni~iigHvdhGKTTL~D~Ll~~~g~i~~~~~g~~~~~D~~~~E~eRgiTIks~~isl~~~~~~~~~~~~~~~~inlIDTP 81 (222)
T cd01885 2 NICIIAHVDHGKTTLSDSLLASAGIISEKLAGKARYMDSREDEQERGITMKSSAISLYFEYEEEDKADGNEYLINLIDSP 81 (222)
T ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCHHCCCCEEECCCHHHHHHCCCEEEEEEEEEEEEECCCCCCCCCCEEEEEEECC
T ss_conf 69998668877999999999985984121066346514243342054158622689998603443456886389997288
Q ss_pred HHCCCCHHHHHHHHHHHHHHHHHHCCEEECCCCCCHHH--------HHHHCCCCCCCCCCCCCCC
Q ss_conf 00024103566667888998503011020135898566--------3431289853222233344
Q gi|254780809|r 276 GIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE--------ISFPKNIDFIFIGTKSDLY 332 (440)
Q Consensus 276 Gir~t~d~IE~~GI~ra~~~i~~aDlil~v~D~~~~~~--------~~~~~~~~~i~V~NK~Dl~ 332 (440)
|--+-.+++ ...+.-+|..++|+|+.+... .....+.|.++++||+|..
T Consensus 82 GH~dF~~ev--------~~al~~~DgailVVDa~eGv~~qT~~vl~~a~~~~l~~il~iNKiDRl 138 (222)
T cd01885 82 GHVDFSSEV--------TAALRLCDGALVVVDAVEGVCVQTETVLRQALKERVKPVLVINKIDRL 138 (222)
T ss_pred CHHHHHHHH--------HHHHHHCCEEEEEECCCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCC
T ss_conf 569899999--------999985681799610457857789999999998599979999890365
No 245
>KOG0394 consensus
Probab=98.59 E-value=1.1e-07 Score=72.99 Aligned_cols=130 Identities=26% Similarity=0.369 Sum_probs=88.2
Q ss_pred CCCEEEECCCCCCHHHHHHHHHCCHH-----CCCCCCCCCCEEECCCCCCCCCE--EEEEEECCHHCCCCHHHHHHHHHH
Q ss_conf 23024311466318889999855200-----02345468721100012456835--899950810002410356666788
Q gi|254780809|r 219 GYKIVILGHSNAGKSSLFNALAKKDV-----AIVTDIPGTTRDVLTIDLDLEGY--LVKISDTAGIRETDDIVEKEGIKR 291 (440)
Q Consensus 219 g~~v~i~G~pN~GKSSL~N~L~~~~~-----aIVs~~~GTTRD~i~~~~~i~g~--~~~l~DTaGir~t~d~IE~~GI~r 291 (440)
-.+|.|.|-|-|||+||||.++..+= |+++ -|.+...+.+++. ...+-||||--. .-.+|
T Consensus 9 lLKViiLGDsGVGKtSLmn~yv~~kF~~qykaTIg------adFltKev~Vd~~~vtlQiWDTAGQER----FqsLg--- 75 (210)
T KOG0394 9 LLKVIILGDSGVGKTSLMNQYVNKKFSQQYKATIG------ADFLTKEVQVDDRSVTLQIWDTAGQER----FQSLG--- 75 (210)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCC------CEEEEEEEEECCEEEEEEEEECCCHHH----HHHCC---
T ss_conf 35999937998447899999988888887432000------110322799867699999873311777----63146---
Q ss_pred HHHHHHHHCCEEECCCCCCHHHHHH----------------HCCCCCCCCCCCCCCCCCCCH----------------HH
Q ss_conf 8998503011020135898566343----------------128985322223334465420----------------00
Q gi|254780809|r 292 TFLEVENADLILLLKEINSKKEISF----------------PKNIDFIFIGTKSDLYSTYTE----------------EY 339 (440)
Q Consensus 292 a~~~i~~aDlil~v~D~~~~~~~~~----------------~~~~~~i~V~NK~Dl~~~~~~----------------~~ 339 (440)
..--..||..++++|..++..... +..-|++++.||+|+...... -+
T Consensus 76 -~aFYRgaDcCvlvydv~~~~Sfe~L~~Wr~EFl~qa~~~~Pe~FPFVilGNKiD~~~~~~r~VS~~~Aq~WC~s~gnip 154 (210)
T KOG0394 76 -VAFYRGADCCVLVYDVNNPKSFENLENWRKEFLIQASPQDPETFPFVILGNKIDVDGGKSRQVSEKKAQTWCKSKGNIP 154 (210)
T ss_pred -CCEECCCCEEEEEECCCCHHHHCCHHHHHHHHHHHCCCCCCCCCCEEEECCCCCCCCCCCCEEEHHHHHHHHHHCCCCE
T ss_conf -4112477547898326864665118789999987468799775667997551147777501201889999998659950
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 00133332323589999999996
Q gi|254780809|r 340 DHLISSFTGEGLEELINKIKSIL 362 (440)
Q Consensus 340 ~~~ISaktg~Gi~~L~~~I~~~l 362 (440)
-+.+|||...+++..-..+....
T Consensus 155 yfEtSAK~~~NV~~AFe~ia~~a 177 (210)
T KOG0394 155 YFETSAKEATNVDEAFEEIARRA 177 (210)
T ss_pred EEEECCCCCCCHHHHHHHHHHHH
T ss_conf 68710243446899999999999
No 246
>CHL00071 tufA elongation factor Tu
Probab=98.59 E-value=1.6e-07 Score=72.01 Aligned_cols=110 Identities=16% Similarity=0.168 Sum_probs=75.8
Q ss_pred HHHCCCEEEECCCCCCHHHHHHHHHCCH---------------HCCCCCCCCCCEEECCCCCCCCCEEEEEEECCHHCCC
Q ss_conf 3202302431146631888999985520---------------0023454687211000124568358999508100024
Q gi|254780809|r 216 IRNGYKIVILGHSNAGKSSLFNALAKKD---------------VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 (440)
Q Consensus 216 l~~g~~v~i~G~pN~GKSSL~N~L~~~~---------------~aIVs~~~GTTRD~i~~~~~i~g~~~~l~DTaGir~t 280 (440)
-++-++|+++|...+|||||+-+|++.. ..--...-|-|.|.-...+..+...+.++|+||=++-
T Consensus 9 ~k~~vni~~~GHVD~GKSTL~g~L~~~~~~~~~~~~~~~~~~D~~~eEr~rGiTid~~~~~~et~~~~~~~iD~PGH~~f 88 (409)
T CHL00071 9 KKPHVNIGTIGHVDHGKTTLTAAITMTLAANGGAKGKKYDEIDSAPEEKARGITINTAHVEYETENRHYAHVDCPGHADY 88 (409)
T ss_pred CCCEEEEEEECCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHCCCCHHHHHCCCEEEECEEEEECCCEEEEEEECCCHHHH
T ss_conf 99869999995458839999999864530045133431553237976873694488024899628759999867967899
Q ss_pred CHHHHHHHHHHHHHHHHHHCCEEECCCCCCHHH--------HHHHCCCCC-CCCCCCCCCCC
Q ss_conf 103566667888998503011020135898566--------343128985-32222333446
Q gi|254780809|r 281 DDIVEKEGIKRTFLEVENADLILLLKEINSKKE--------ISFPKNIDF-IFIGTKSDLYS 333 (440)
Q Consensus 281 ~d~IE~~GI~ra~~~i~~aDlil~v~D~~~~~~--------~~~~~~~~~-i~V~NK~Dl~~ 333 (440)
++-...-+..||..++|+|+.+... +...-+.|. |+++||+|+.+
T Consensus 89 --------v~nmi~Gas~aD~alLVV~A~~G~~~QTkEHl~l~~~lgV~~~IVavnKmD~v~ 142 (409)
T CHL00071 89 --------VKNMITGAAQMDGAILVVSAADGPMPQTKEHILLAKQVGVPNIVVFLNKEDQVD 142 (409)
T ss_pred --------HHHHHHHHCCCCCEEEEEECCCCCCCCHHHHHHHHHHCCCCCEEEEEECCCCCC
T ss_conf --------999875230158128999868788500499999999739993655555679854
No 247
>KOG2486 consensus
Probab=98.58 E-value=9.5e-08 Score=73.56 Aligned_cols=141 Identities=24% Similarity=0.162 Sum_probs=87.4
Q ss_pred CCCEEEECCCCCCHHHHHHHHHCCHH-CC-CCCCCCCCEEECCCCCCCCCEEEEEEECCHHCCCC--HHHHHHHHHHHHH
Q ss_conf 23024311466318889999855200-02-34546872110001245683589995081000241--0356666788899
Q gi|254780809|r 219 GYKIVILGHSNAGKSSLFNALAKKDV-AI-VTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETD--DIVEKEGIKRTFL 294 (440)
Q Consensus 219 g~~v~i~G~pN~GKSSL~N~L~~~~~-aI-Vs~~~GTTRD~i~~~~~i~g~~~~l~DTaGir~t~--d~IE~~GI~ra~~ 294 (440)
.++++++|..|||||||+|.++..+. +- ++..+|-|+ +-+...-|..+.++|.||+..+. .+.-+.=..-++.
T Consensus 136 ~pe~~~~g~SNVGKSSLln~~~r~k~~~~t~k~K~g~Tq---~in~f~v~~~~~~vDlPG~~~a~y~~~~~~d~~~~t~~ 212 (320)
T KOG2486 136 RPELAFYGRSNVGKSSLLNDLVRVKNIADTSKSKNGKTQ---AINHFHVGKSWYEVDLPGYGRAGYGFELPADWDKFTKS 212 (320)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCE---EEEEEECCCEEEEEECCCCCCCCCCCCCCCHHHHHHHH
T ss_conf 852666247762278887654321455640378876511---32001205548998468865456785574147675788
Q ss_pred HHH---HHCCEEECCCCCCH------HHHHH--HCCCCCCCCCCCCCCCCCCCH------------------------HH
Q ss_conf 850---30110201358985------66343--128985322223334465420------------------------00
Q gi|254780809|r 295 EVE---NADLILLLKEINSK------KEISF--PKNIDFIFIGTKSDLYSTYTE------------------------EY 339 (440)
Q Consensus 295 ~i~---~aDlil~v~D~~~~------~~~~~--~~~~~~i~V~NK~Dl~~~~~~------------------------~~ 339 (440)
... .---++.++|++.+ ..+.+ ..+.|+.+|+||+|....... ..
T Consensus 213 Y~leR~nLv~~FLLvd~sv~i~~~D~~~i~~~ge~~VP~t~vfTK~DK~k~~~~~~kKp~~~i~~~f~~l~~~~f~~~~P 292 (320)
T KOG2486 213 YLLERENLVRVFLLVDASVPIQPTDNPEIAWLGENNVPMTSVFTKCDKQKKVKRTGKKPGLNIKINFQGLIRGVFLVDLP 292 (320)
T ss_pred HHHHHHHHHEEEEEEECCCCCCCCCHHHHHHHHHCCCCEEEEEEHHHHHHHCCCCCCCCCCCCEEEHHHCCCCCEECCCC
T ss_conf 88726533115666303678899876999887524997388630244555302235575400121020015000411587
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 00133332323589999999996
Q gi|254780809|r 340 DHLISSFTGEGLEELINKIKSIL 362 (440)
Q Consensus 340 ~~~ISaktg~Gi~~L~~~I~~~l 362 (440)
.+++|+.|+.|++.|+-.|.+..
T Consensus 293 w~~~Ssvt~~Grd~Ll~~i~q~~ 315 (320)
T KOG2486 293 WIYVSSVTSLGRDLLLLHIAQLR 315 (320)
T ss_pred CEEEECCCCCCCEEEEEEHHHHH
T ss_conf 01320434257200110166442
No 248
>PRK07560 elongation factor EF-2; Reviewed
Probab=98.57 E-value=7.1e-07 Score=67.51 Aligned_cols=104 Identities=19% Similarity=0.250 Sum_probs=62.0
Q ss_pred CEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCCE--EECCCC-----------------CCCCCEEEEEEECCHHCCCC
Q ss_conf 02431146631888999985520002345468721--100012-----------------45683589995081000241
Q gi|254780809|r 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR--DVLTID-----------------LDLEGYLVKISDTAGIRETD 281 (440)
Q Consensus 221 ~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTTR--D~i~~~-----------------~~i~g~~~~l~DTaGir~t~ 281 (440)
.|+|+|...+||+||.-+|+-.--+|-.+..|++| |+.... ..+..+.+.|+||||--+-.
T Consensus 22 NI~IiaHvdaGKTTLtE~lL~~sg~i~~~~~~~~t~~D~~~~E~eRgITI~sa~~sl~~~~~~~~~~INlIDTPGh~DF~ 101 (730)
T PRK07560 22 NIGIVAHIDHGKTTLSDNLLAGAGMISEELAGKQLALDYDEEEQARGITIKAANVSMVHEYEGKEYLINLIDTPGHVDFG 101 (730)
T ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCEECCCHHHHHHCCCCEEECCEEEEEEECCCCEEEEEECCCCCCHHH
T ss_conf 89999379989899999999964998653479864178859999729857521102898756983789998196973059
Q ss_pred HHHHHHHHHHHHHHHHHHCCEEECCCCCCH-------HHH-HHHCCCCCCCCCCCCCCC
Q ss_conf 035666678889985030110201358985-------663-431289853222233344
Q gi|254780809|r 282 DIVEKEGIKRTFLEVENADLILLLKEINSK-------KEI-SFPKNIDFIFIGTKSDLY 332 (440)
Q Consensus 282 d~IE~~GI~ra~~~i~~aDlil~v~D~~~~-------~~~-~~~~~~~~i~V~NK~Dl~ 332 (440)
.++| +| +.-+|-.++|+|+.+. -|. ....+.|.++++||.|..
T Consensus 102 ~Ev~-----~a---Lrv~DgAvvVvdav~GV~~qTe~v~rqa~~~~~p~ilfINKmDR~ 152 (730)
T PRK07560 102 GDVT-----RA---MRAVDGAIVVVDAVEGVMPQTETVLRQALEERVRPVLFINKVDRL 152 (730)
T ss_pred HHHH-----HH---HHHHCEEEEEEECCCCCCCHHHHHHHHHHHCCCCEEEEEECCCCC
T ss_conf 9999-----99---988587899997898877318999999987799979998686623
No 249
>COG1217 TypA Predicted membrane GTPase involved in stress response [Signal transduction mechanisms]
Probab=98.51 E-value=4.4e-07 Score=68.92 Aligned_cols=142 Identities=22% Similarity=0.264 Sum_probs=97.2
Q ss_pred CEEEECCCCCCHHHHHHHHHCC-----------HHCCCCC----CCCCCEEECCCCCCCCCEEEEEEECCHHCCCCHHHH
Q ss_conf 0243114663188899998552-----------0002345----468721100012456835899950810002410356
Q gi|254780809|r 221 KIVILGHSNAGKSSLFNALAKK-----------DVAIVTD----IPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVE 285 (440)
Q Consensus 221 ~v~i~G~pN~GKSSL~N~L~~~-----------~~aIVs~----~~GTTRD~i~~~~~i~g~~~~l~DTaGir~t~d~IE 285 (440)
.|||+-...-||.||...|+.+ +|++-|+ .-|-|-=.=...+.|+|+.+.++||||--+-..++|
T Consensus 7 NIAIIAHVDHGKTTLVD~LLkQSGtf~~~e~v~ERvMDSnDlEkERGITILaKnTav~~~~~~INIvDTPGHADFGGEVE 86 (603)
T COG1217 7 NIAIIAHVDHGKTTLVDALLKQSGTFREREEVAERVMDSNDLEKERGITILAKNTAVNYNGTRINIVDTPGHADFGGEVE 86 (603)
T ss_pred EEEEEEEECCCCCHHHHHHHHHCCCCCCCCCHHHHHCCCCCHHHHCCCEEEECCCEEECCCEEEEEECCCCCCCCCCHHH
T ss_conf 06899984488102899998731654456520144037642344349389851524620883898765898677662545
Q ss_pred HHHHHHHHHHHHHHCCEEECCCCCCHHHH--------HHHCCCCCCCCCCCCCCCCCCCHHH------------------
Q ss_conf 66678889985030110201358985663--------4312898532222333446542000------------------
Q gi|254780809|r 286 KEGIKRTFLEVENADLILLLKEINSKKEI--------SFPKNIDFIFIGTKSDLYSTYTEEY------------------ 339 (440)
Q Consensus 286 ~~GI~ra~~~i~~aDlil~v~D~~~~~~~--------~~~~~~~~i~V~NK~Dl~~~~~~~~------------------ 339 (440)
+. +.-.|-+|+|+|+.+.... .+..+.+-|+|+||+|.....+.+.
T Consensus 87 Rv--------l~MVDgvlLlVDA~EGpMPQTrFVlkKAl~~gL~PIVVvNKiDrp~Arp~~Vvd~vfDLf~~L~A~deQL 158 (603)
T COG1217 87 RV--------LSMVDGVLLLVDASEGPMPQTRFVLKKALALGLKPIVVINKIDRPDARPDEVVDEVFDLFVELGATDEQL 158 (603)
T ss_pred HH--------HHHCCEEEEEEECCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHCCCHHHC
T ss_conf 11--------4323348999975558887314448999974998489996778999887899999999999819974557
Q ss_pred ---HHHHHHHHH----------HHHHHHHHHHHHHHHHHCCCCC
Q ss_conf ---001333323----------2358999999999632203588
Q gi|254780809|r 340 ---DHLISSFTG----------EGLEELINKIKSILSNKFKKLP 370 (440)
Q Consensus 340 ---~~~ISaktg----------~Gi~~L~~~I~~~l~~~~~~~~ 370 (440)
.++-|++.| ..+..|.++|.+.+.....+.+
T Consensus 159 dFPivYAS~~~G~a~~~~~~~~~~m~pLfe~I~~hvp~P~~~~d 202 (603)
T COG1217 159 DFPIVYASARNGTASLDPEDEADDMAPLFETILDHVPAPKGDLD 202 (603)
T ss_pred CCEEEEEECCCCEECCCCCCCCCCHHHHHHHHHHHCCCCCCCCC
T ss_conf 87079854147510158655555316899999975899989998
No 250
>KOG0098 consensus
Probab=98.51 E-value=5.9e-07 Score=68.07 Aligned_cols=133 Identities=24% Similarity=0.213 Sum_probs=86.4
Q ss_pred CCCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCCE--EECCCCCCCCCE--EEEEEECCHHCCCCHHHHHHHHHHHHH
Q ss_conf 2302431146631888999985520002345468721--100012456835--899950810002410356666788899
Q gi|254780809|r 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR--DVLTIDLDLEGY--LVKISDTAGIRETDDIVEKEGIKRTFL 294 (440)
Q Consensus 219 g~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTTR--D~i~~~~~i~g~--~~~l~DTaGir~t~d~IE~~GI~ra~~ 294 (440)
-+++.|+|-.-||||.|+-+.+.+.= ++..+ +|- |..-..+.+++. ++++.||||-- .. -.-+..
T Consensus 6 ~fKyIiiGd~gVGKSclllrf~~krF--~~~hd-~TiGvefg~r~~~id~k~IKlqiwDtaGqe-------~f-rsv~~s 74 (216)
T KOG0098 6 LFKYIIIGDTGVGKSCLLLRFTDKRF--QPVHD-LTIGVEFGARMVTIDGKQIKLQIWDTAGQE-------SF-RSVTRS 74 (216)
T ss_pred EEEEEEECCCCCCHHHHHHHHHCCCC--CCCCC-CEEEEEECEEEEEECCCEEEEEEEECCCCH-------HH-HHHHHH
T ss_conf 47899987777328899999851576--54534-302244023698885816899997557867-------69-998888
Q ss_pred HHHHHCCEEECCCCCCHHHHH-------H-----HCCCCCCCCCCCCCCCCCCCHH---H----------HHHHHHHHHH
Q ss_conf 850301102013589856634-------3-----1289853222233344654200---0----------0013333232
Q gi|254780809|r 295 EVENADLILLLKEINSKKEIS-------F-----PKNIDFIFIGTKSDLYSTYTEE---Y----------DHLISSFTGE 349 (440)
Q Consensus 295 ~i~~aDlil~v~D~~~~~~~~-------~-----~~~~~~i~V~NK~Dl~~~~~~~---~----------~~~ISaktg~ 349 (440)
.-+.|--.|+|+|.+...... . ..+..++++.||+||....... . ....||+|++
T Consensus 75 yYr~a~GalLVydit~r~sF~hL~~wL~D~rq~~~~NmvImLiGNKsDL~~rR~Vs~EEGeaFA~ehgLifmETSakt~~ 154 (216)
T KOG0098 75 YYRGAAGALLVYDITRRESFNHLTSWLEDARQHSNENMVIMLIGNKSDLEARREVSKEEGEAFAREHGLIFMETSAKTAE 154 (216)
T ss_pred HHCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCEEEEECCHHHHHCCCCCCHHHHHHHHHHCCCEEEHHHHHHHH
T ss_conf 84467623899971306667789999999997267883899974414421023465888999999739544412445542
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 3589999999996
Q gi|254780809|r 350 GLEELINKIKSIL 362 (440)
Q Consensus 350 Gi~~L~~~I~~~l 362 (440)
|+++....+...+
T Consensus 155 ~VEEaF~nta~~I 167 (216)
T KOG0098 155 NVEEAFINTAKEI 167 (216)
T ss_pred HHHHHHHHHHHHH
T ss_conf 3999999999999
No 251
>COG1162 Predicted GTPases [General function prediction only]
Probab=98.50 E-value=3.1e-07 Score=69.97 Aligned_cols=78 Identities=35% Similarity=0.390 Sum_probs=53.8
Q ss_pred CCCEEEECCCCCCHHHHHHHHHCCHHCCCCCCC-------CCCEEECCCCCCCCCEEEEEEECCHHCCCC-HHHHHHHHH
Q ss_conf 230243114663188899998552000234546-------872110001245683589995081000241-035666678
Q gi|254780809|r 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIP-------GTTRDVLTIDLDLEGYLVKISDTAGIRETD-DIVEKEGIK 290 (440)
Q Consensus 219 g~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~-------GTTRD~i~~~~~i~g~~~~l~DTaGir~t~-d~IE~~GI~ 290 (440)
|-..+++|+.-||||||+|+|.++...-|.++. .|||...--.+.-+| .++||||+|+-. +.++.+.+.
T Consensus 164 ~~~svl~GqSGVGKSSLiN~L~p~~~~~t~eIS~~~~rGkHTTt~~~l~~l~~gG---~iiDTPGf~~~~l~~~~~e~l~ 240 (301)
T COG1162 164 GKITVLLGQSGVGKSTLINALLPELNQKTGEISEKLGRGRHTTTHVELFPLPGGG---WIIDTPGFRSLGLAHLEPEDLV 240 (301)
T ss_pred CCEEEEECCCCCCHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCCEEEEEECCCCC---EEEECCCCCCCCCCCCCHHHHH
T ss_conf 8849998888776999887417212113442104478988763248999838998---8972899771474567999999
Q ss_pred HHHHHHHHH
Q ss_conf 889985030
Q gi|254780809|r 291 RTFLEVENA 299 (440)
Q Consensus 291 ra~~~i~~a 299 (440)
++...+.+.
T Consensus 241 ~~F~ef~~~ 249 (301)
T COG1162 241 QAFPEFAEL 249 (301)
T ss_pred HHHHHHHHH
T ss_conf 976999987
No 252
>PRK00007 elongation factor G; Reviewed
Probab=98.48 E-value=9.3e-06 Score=59.74 Aligned_cols=14 Identities=21% Similarity=0.496 Sum_probs=6.4
Q ss_pred CCCCHHHHHHHHHC
Q ss_conf 66318889999855
Q gi|254780809|r 228 SNAGKSSLFNALAK 241 (440)
Q Consensus 228 pN~GKSSL~N~L~~ 241 (440)
-|.|=..|+++++.
T Consensus 265 ~~~Gv~~LLd~i~~ 278 (693)
T PRK00007 265 KNKGVQPMLDAVVD 278 (693)
T ss_pred CCCCHHHHHHHHHH
T ss_conf 48789999999998
No 253
>pfam00735 Septin Septin. Members of this family include CDC3, CDC10, CDC11 and CDC12/Septin. Members of this family bind GTP. As regards the septins, these are polypeptides of 30-65kDa with three characteristic GTPase motifs (G-1, G-3 and G-4) that are similar to those of the Ras family. The G-4 motif is strictly conserved with a unique septin consensus of AKAD. Most septins are thought to have at least one coiled-coil region, which in some cases is necessary for intermolecular interactions that allow septins to polymerize to form rod-shaped complexes. In turn, these are arranged into tandem arrays to form filaments. They are multifunctional proteins, with roles in cytokinesis, sporulation, germ cell development, exocytosis and apoptosis.
Probab=98.48 E-value=6e-07 Score=68.00 Aligned_cols=116 Identities=21% Similarity=0.391 Sum_probs=69.8
Q ss_pred CCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCC------CEEECC--CCCCCCCE--EEEEEECCHHCCCCHH------
Q ss_conf 3024311466318889999855200023454687------211000--12456835--8999508100024103------
Q gi|254780809|r 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGT------TRDVLT--IDLDLEGY--LVKISDTAGIRETDDI------ 283 (440)
Q Consensus 220 ~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GT------TRD~i~--~~~~i~g~--~~~l~DTaGir~t~d~------ 283 (440)
++|.++|....|||||+|.|++.+..-....+.. |-.+.. ..+.-+|+ .++++||||+.+.-|.
T Consensus 5 fnimvvG~sGlGKTTfiNtL~~~~~~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtiiDTpGfGd~i~n~~~~~~ 84 (280)
T pfam00735 5 FTLMVVGESGLGKTTLINTLFLTDLYPERGIPGPSEKIKKTVEIKATTVEIEEDGVKLNLTVIDTPGFGDAIDNSNCWKP 84 (280)
T ss_pred EEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCEEEEEEEEECCCCCCCCCHHHHHHH
T ss_conf 89999779999789999998578577866788843355677534889999988998999999989984233451666999
Q ss_pred ----H---------HHHHHHHHHHHHHHHCCEEECCCCCC----HHHHHHH----CCCCCCCCCCCCCCCCCC
Q ss_conf ----5---------66667888998503011020135898----5663431----289853222233344654
Q gi|254780809|r 284 ----V---------EKEGIKRTFLEVENADLILLLKEINS----KKEISFP----KNIDFIFIGTKSDLYSTY 335 (440)
Q Consensus 284 ----I---------E~~GI~ra~~~i~~aDlil~v~D~~~----~~~~~~~----~~~~~i~V~NK~Dl~~~~ 335 (440)
| |...+.|+.-.-..-+++||.++++. +.++..+ +..++|.|+.|+|.....
T Consensus 85 I~~yI~~qf~~yl~eE~~i~R~~~~D~RVH~cLYFI~Ptgh~L~~lDi~~mk~Ls~~vNvIPVIaKADtLT~~ 157 (280)
T pfam00735 85 IVEYIDEQFEQYLRDESRLNRTSIVDNRVHCCLYFISPTGHGLKPLDVEFMKKLHEKVNIIPVIAKADTLTPD 157 (280)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCHH
T ss_conf 9999999999999986475667778884379999756888888688999999871446536666214558999
No 254
>COG5256 TEF1 Translation elongation factor EF-1alpha (GTPase) [Translation, ribosomal structure and biogenesis]
Probab=98.47 E-value=1.6e-07 Score=71.99 Aligned_cols=108 Identities=28% Similarity=0.326 Sum_probs=76.9
Q ss_pred CCCEEEECCCCCCHHHHHHHHHCCH------------------------HCCCCC------CCCCCEEECCCCCCCCCEE
Q ss_conf 2302431146631888999985520------------------------002345------4687211000124568358
Q gi|254780809|r 219 GYKIVILGHSNAGKSSLFNALAKKD------------------------VAIVTD------IPGTTRDVLTIDLDLEGYL 268 (440)
Q Consensus 219 g~~v~i~G~pN~GKSSL~N~L~~~~------------------------~aIVs~------~~GTTRD~i~~~~~i~g~~ 268 (440)
-++++++|.+++|||||+-+|+=+- -|-|-| .-|-|-|+-...+..+...
T Consensus 7 h~nl~~iGHVD~GKSTl~GrLly~~G~id~~tmeK~~~ea~~~gK~sf~fawvlD~tkeERerGvTi~~~~~~fet~k~~ 86 (428)
T COG5256 7 HLNLVFIGHVDAGKSTLVGRLLYDLGEIDKRTMEKLEKEAKELGKESFKFAWVLDKTKEERERGVTIDVAHSKFETDKYN 86 (428)
T ss_pred CEEEEEECCCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHCCEEEEEEEEEEECCCCE
T ss_conf 12899983787870344556577737979899999999998619771689998538866786666899777886437705
Q ss_pred EEEEECCHHCCCCHHHHHHHHHHHHHHHHHHCCEEECCCCCCHHHH---------------HHHCC-CCCCCCCCCCCCC
Q ss_conf 9995081000241035666678889985030110201358985663---------------43128-9853222233344
Q gi|254780809|r 269 VKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEI---------------SFPKN-IDFIFIGTKSDLY 332 (440)
Q Consensus 269 ~~l~DTaGir~t~d~IE~~GI~ra~~~i~~aDlil~v~D~~~~~~~---------------~~~~~-~~~i~V~NK~Dl~ 332 (440)
++++|+||-|+- +.....-+.+||.-++|+|++...+. ....+ ..+|+++||+|+.
T Consensus 87 ~tIiDaPGHrdF--------vknmItGasqAD~aVLVV~a~~~efE~g~~~~gQtrEH~~La~tlGi~~lIVavNKMD~v 158 (428)
T COG5256 87 FTIIDAPGHRDF--------VKNMITGASQADVAVLVVDARDGEFEAGFGVGGQTREHAFLARTLGIKQLIVAVNKMDLV 158 (428)
T ss_pred EEEEECCCHHHH--------HHHHHCCHHHCCEEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHCCCCEEEEEEECCCCC
T ss_conf 899607846778--------987631331336799999888983101436587516789999856975699999715666
Q ss_pred CC
Q ss_conf 65
Q gi|254780809|r 333 ST 334 (440)
Q Consensus 333 ~~ 334 (440)
+.
T Consensus 159 ~w 160 (428)
T COG5256 159 SW 160 (428)
T ss_pred CC
T ss_conf 62
No 255
>COG3276 SelB Selenocysteine-specific translation elongation factor [Translation, ribosomal structure and biogenesis]
Probab=98.47 E-value=5.3e-07 Score=68.38 Aligned_cols=135 Identities=24% Similarity=0.234 Sum_probs=89.9
Q ss_pred CEEEECCCCCCHHHHHHHHHCCHHCCCC--CCCCCCEEECCCCCCCCCEEEEEEECCHHCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 0243114663188899998552000234--54687211000124568358999508100024103566667888998503
Q gi|254780809|r 221 KIVILGHSNAGKSSLFNALAKKDVAIVT--DIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298 (440)
Q Consensus 221 ~v~i~G~pN~GKSSL~N~L~~~~~aIVs--~~~GTTRD~i~~~~~i~g~~~~l~DTaGir~t~d~IE~~GI~ra~~~i~~ 298 (440)
-|+.+|.---||+||+-++.|-.-.+-- ..-|||-|.=-.+...+...+.|+|+||.-+ . |.-....+.-
T Consensus 2 ii~t~GhidHgkT~L~~altg~~~d~l~EekKRG~TiDlg~~y~~~~d~~~~fIDvpgh~~---~-----i~~miag~~~ 73 (447)
T COG3276 2 IIGTAGHIDHGKTTLLKALTGGVTDRLPEEKKRGITIDLGFYYRKLEDGVMGFIDVPGHPD---F-----ISNLLAGLGG 73 (447)
T ss_pred EEEEEEEEECCCHHHHHHHCCCCCCCCHHHHHCCCEEEEEEEECCCCCCCEEEEECCCCHH---H-----HHHHHHHHCC
T ss_conf 6997400201430223330255332054566158468420573257777368861898478---8-----9999854057
Q ss_pred HCCEEECCCCCCHH---------HHHHHCCCCCCCCCCCCCCCCCCC---------------HHHHHHHHHHHHHHHHHH
Q ss_conf 01102013589856---------634312898532222333446542---------------000001333323235899
Q gi|254780809|r 299 ADLILLLKEINSKK---------EISFPKNIDFIFIGTKSDLYSTYT---------------EEYDHLISSFTGEGLEEL 354 (440)
Q Consensus 299 aDlil~v~D~~~~~---------~~~~~~~~~~i~V~NK~Dl~~~~~---------------~~~~~~ISaktg~Gi~~L 354 (440)
.|..++|+|+++.. .+.....+..++|++|+|...... ....+.+|+++|+||++|
T Consensus 74 ~d~alLvV~~deGl~~qtgEhL~iLdllgi~~giivltk~D~~d~~r~e~~i~~Il~~l~l~~~~i~~~s~~~g~Gi~~L 153 (447)
T COG3276 74 IDYALLVVAADEGLMAQTGEHLLILDLLGIKNGIIVLTKADRVDEARIEQKIKQILADLSLANAKIFKTSAKTGRGIEEL 153 (447)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHH
T ss_conf 74589998475576643688999998619873289996223446788999999998650200032301101257877999
Q ss_pred HHHHHHHHH
Q ss_conf 999999963
Q gi|254780809|r 355 INKIKSILS 363 (440)
Q Consensus 355 ~~~I~~~l~ 363 (440)
++.|.+...
T Consensus 154 k~~l~~L~~ 162 (447)
T COG3276 154 KNELIDLLE 162 (447)
T ss_pred HHHHHHHHH
T ss_conf 999987520
No 256
>PRK01889 ribosome-associated GTPase; Reviewed
Probab=98.47 E-value=3.2e-07 Score=69.92 Aligned_cols=79 Identities=33% Similarity=0.405 Sum_probs=49.4
Q ss_pred HHHHCCCEEEECCCCCCHHHHHHHHHCCHHCC---CCCC----CCCCEEECCCCCCCCCEEEEEEECCHHCCCC-HHHHH
Q ss_conf 43202302431146631888999985520002---3454----6872110001245683589995081000241-03566
Q gi|254780809|r 215 IIRNGYKIVILGHSNAGKSSLFNALAKKDVAI---VTDI----PGTTRDVLTIDLDLEGYLVKISDTAGIRETD-DIVEK 286 (440)
Q Consensus 215 ~l~~g~~v~i~G~pN~GKSSL~N~L~~~~~aI---Vs~~----~GTTRD~i~~~~~i~g~~~~l~DTaGir~t~-d~IE~ 286 (440)
.+..|-+++++|..-||||||+|+|++.+.-- |+.. -.||+ -..-+.+.+- -.++||||+|+-. -..+
T Consensus 190 ~l~~GkT~vl~G~SGVGKSTLiN~L~g~~~~~t~~is~~~~kGRHTTt--~reL~~lp~G-g~lIDTPG~Re~~l~~~~- 265 (353)
T PRK01889 190 WLKPGKTVALLGSSGVGKSTLVNALLGEEVQKTGAVREDDSKGRHTTT--HRELHPLPSG-GLLIDTPGMRELQLWDCE- 265 (353)
T ss_pred HHHCCCEEEEECCCCCCHHHHHHHHCCHHHHHHHCCCCCCCCCEECCC--EEEEEECCCC-CEEEECCCCCCCCCCCCH-
T ss_conf 863497899977888669999987565345344150003699500124--0689994899-589737986546777848-
Q ss_pred HHHHHHHHHHH
Q ss_conf 66788899850
Q gi|254780809|r 287 EGIKRTFLEVE 297 (440)
Q Consensus 287 ~GI~ra~~~i~ 297 (440)
.|+..++..+.
T Consensus 266 ~~l~~~F~di~ 276 (353)
T PRK01889 266 DGVEETFSDIE 276 (353)
T ss_pred HHHHHHHHHHH
T ss_conf 88999779899
No 257
>KOG0448 consensus
Probab=98.47 E-value=9.1e-07 Score=66.74 Aligned_cols=113 Identities=23% Similarity=0.326 Sum_probs=65.3
Q ss_pred HHHCCCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCC------------------------EEECCCC----------
Q ss_conf 320230243114663188899998552000234546872------------------------1100012----------
Q gi|254780809|r 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT------------------------RDVLTID---------- 261 (440)
Q Consensus 216 l~~g~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTT------------------------RD~i~~~---------- 261 (440)
-+.-.+|+|.|++|+||||++|+++.++. .-+++-.|| +|+....
T Consensus 106 ~r~~mKV~ifGrts~GKSt~iNAmL~~kl-LP~g~gh~TncF~~VegadG~e~vl~~~~s~ek~d~~ti~~~~haL~~~~ 184 (749)
T KOG0448 106 ARRHMKVAIFGRTSAGKSTVINAMLHKKL-LPSGIGHTTNCFLEVEGADGAEAVLATEGSEEKIDMKTINQLAHALKPDK 184 (749)
T ss_pred HHCCCEEEEECCCCCCHHHHHHHHHHHHC-CCCCCCCCCEEEEEECCCCCCCEEECCCCCCCCCCHHHHHHHHHHCCCCC
T ss_conf 52134799957877768999999998720-76666553123466314677311551688734321888777787517330
Q ss_pred ---------CCCCC-------EEEEEEECCHHCCCCHHHHHHHHHHHHHHHHHHCCEEECCCCCCHHHH---H----HHC
Q ss_conf ---------45683-------589995081000241035666678889985030110201358985663---4----312
Q gi|254780809|r 262 ---------LDLEG-------YLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEI---S----FPK 318 (440)
Q Consensus 262 ---------~~i~g-------~~~~l~DTaGir~t~d~IE~~GI~ra~~~i~~aDlil~v~D~~~~~~~---~----~~~ 318 (440)
+.|.. ..+.|+|.||+--+... . .-.-+.-.++|++++|..+.+.... . ...
T Consensus 185 ~~~~~sLlrV~~p~~~csLLrnDivliDsPGld~~se~-t----swid~~cldaDVfVlV~NaEntlt~sek~Ff~~vs~ 259 (749)
T KOG0448 185 DLGAGSLLRVFWPDDKCSLLRNDIVLIDSPGLDVDSEL-T----SWIDSFCLDADVFVLVVNAENTLTLSEKQFFHKVSE 259 (749)
T ss_pred CCCCCEEEEEEECCCCCHHHHCCCEEECCCCCCCCHHH-H----HHHHHHHHCCCEEEEEECCCCHHHHHHHHHHHHHHC
T ss_conf 03765068999428632133055012058888886024-5----999976440775899961763868989999998540
Q ss_pred CCCCCC-CCCCCCCCCC
Q ss_conf 898532-2223334465
Q gi|254780809|r 319 NIDFIF-IGTKSDLYST 334 (440)
Q Consensus 319 ~~~~i~-V~NK~Dl~~~ 334 (440)
.+|.|+ +.||.|....
T Consensus 260 ~KpniFIlnnkwDasas 276 (749)
T KOG0448 260 EKPNIFILNNKWDASAS 276 (749)
T ss_pred CCCCEEEEECHHHHHCC
T ss_conf 48847999640122026
No 258
>KOG0070 consensus
Probab=98.47 E-value=1.9e-07 Score=71.39 Aligned_cols=134 Identities=19% Similarity=0.301 Sum_probs=96.4
Q ss_pred HCCCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCCEEECCCCCCCCCEEEEEEECCHHCCCCHHHHHHHHHHH-HHHH
Q ss_conf 023024311466318889999855200023454687211000124568358999508100024103566667888-9985
Q gi|254780809|r 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRT-FLEV 296 (440)
Q Consensus 218 ~g~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTTRD~i~~~~~i~g~~~~l~DTaGir~t~d~IE~~GI~ra-~~~i 296 (440)
+-.+|+++|.-||||||+++.|--.+ +|+.+| |-..--+.+.+.++.+.+-|-.|-- . ++.. ....
T Consensus 16 ~e~~IlmvGLD~AGKTTILyklk~~E--~vttvP--TiGfnVE~v~ykn~~f~vWDvGGq~----k-----~R~lW~~Y~ 82 (181)
T KOG0070 16 KEMRILMVGLDAAGKTTILYKLKLGE--IVTTVP--TIGFNVETVEYKNISFTVWDVGGQE----K-----LRPLWKHYF 82 (181)
T ss_pred CEEEEEEEECCCCCCCEEEEECCCCC--CCCCCC--CCCCCEEEEEECCEEEEEEECCCCC----C-----CCCCHHHHC
T ss_conf 46799999616898601567502587--414778--6453136999866189998158873----5-----453135320
Q ss_pred HHHCCEEECCCCCCHHHHHH-------------HCCCCCCCCCCCCCCCCCCCHH----------------HHHHHHHHH
Q ss_conf 03011020135898566343-------------1289853222233344654200----------------000133332
Q gi|254780809|r 297 ENADLILLLKEINSKKEISF-------------PKNIDFIFIGTKSDLYSTYTEE----------------YDHLISSFT 347 (440)
Q Consensus 297 ~~aDlil~v~D~~~~~~~~~-------------~~~~~~i~V~NK~Dl~~~~~~~----------------~~~~ISakt 347 (440)
...+.++||+|.++..-+.. ..+.|+++..||.|+....... .....+|.+
T Consensus 83 ~nt~~lIfVvDS~Dr~Ri~eak~eL~~~l~~~~l~~~~llv~aNKqD~~~als~~ei~~~L~l~~l~~~~w~iq~~~a~~ 162 (181)
T KOG0070 83 QNTQGLIFVVDSSDRERIEEAKEELHRMLAEPELRNAPLLVFANKQDLPGALSAAEITNKLGLHSLRSRNWHIQSTCAIS 162 (181)
T ss_pred CCCCEEEEEEECCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEECHHHCCCCCCHHHHHHHHHHHCCCCCCCEEEEECCCC
T ss_conf 37727999981773888999999999997683447736999842120424578889886743301468872895301356
Q ss_pred HHHHHHHHHHHHHHHHH
Q ss_conf 32358999999999632
Q gi|254780809|r 348 GEGLEELINKIKSILSN 364 (440)
Q Consensus 348 g~Gi~~L~~~I~~~l~~ 364 (440)
|+|+.+=++-+.+.+..
T Consensus 163 G~GL~egl~wl~~~~~~ 179 (181)
T KOG0070 163 GEGLYEGLDWLSNNLKK 179 (181)
T ss_pred CCCHHHHHHHHHHHHHC
T ss_conf 54489999999998630
No 259
>PTZ00099 rab6; Provisional
Probab=98.44 E-value=3.8e-07 Score=69.39 Aligned_cols=102 Identities=22% Similarity=0.254 Sum_probs=71.3
Q ss_pred EECCCCCCCCCE--EEEEEECCHHCCCCHHHHHHHHHHHHHHHHHHCCEEECCCCCCHHHHH-------H-----HCCCC
Q ss_conf 100012456835--899950810002410356666788899850301102013589856634-------3-----12898
Q gi|254780809|r 256 DVLTIDLDLEGY--LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEIS-------F-----PKNID 321 (440)
Q Consensus 256 D~i~~~~~i~g~--~~~l~DTaGir~t~d~IE~~GI~ra~~~i~~aDlil~v~D~~~~~~~~-------~-----~~~~~ 321 (440)
|+....+.++|. .+.|.||||--.-. ..+......|+.+++|+|.+++..+. . ..+.+
T Consensus 16 df~~k~i~i~~~~v~l~IWDTAGqE~f~--------sl~~~y~r~a~~~ilVyDit~~~SF~~l~~W~~~i~~~~~~~~~ 87 (176)
T PTZ00099 16 DFLSKTLYLDEGPVRLQLWDTAGQERFR--------SLIPSYIRDSAAAIVVYDITNRQSFENTTKWIQDILNERGKDVI 87 (176)
T ss_pred EEEEEEEEECCEEEEEEEEECCCCCCHH--------HHHHHHHCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 8899999999999999999799863413--------57688707986799985042077899999999999985388774
Q ss_pred CCCCCCCCCCCCCCCHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 53222233344654200-------------000133332323589999999996322
Q gi|254780809|r 322 FIFIGTKSDLYSTYTEE-------------YDHLISSFTGEGLEELINKIKSILSNK 365 (440)
Q Consensus 322 ~i~V~NK~Dl~~~~~~~-------------~~~~ISaktg~Gi~~L~~~I~~~l~~~ 365 (440)
+++|.||+||....... .-+.+|||+|.|++++-+.|.+.+...
T Consensus 88 iiLVGNK~DL~~~r~V~~ee~~~~A~~~~~~f~EtSAktg~nV~e~F~~la~~i~~~ 144 (176)
T PTZ00099 88 IALVGNKTDLGDLRKVTYEEGMQKAQEYNTMFHETSAKAGHNIKVLFKKIAAKLPNL 144 (176)
T ss_pred EEEEEECCCHHHHCCCCHHHHHHHHHHCCCEEEEEECCCCCCHHHHHHHHHHHHCCH
T ss_conf 399985565586168599999999998599999984899949899999999986080
No 260
>PRK13768 GTPase; Provisional
Probab=98.43 E-value=4.4e-07 Score=68.95 Aligned_cols=112 Identities=23% Similarity=0.275 Sum_probs=63.8
Q ss_pred CCEEEECCCCCCHHHHHHHHH------CCHHCCCCCCCCCC----------EEECC------------------------
Q ss_conf 302431146631888999985------52000234546872----------11000------------------------
Q gi|254780809|r 220 YKIVILGHSNAGKSSLFNALA------KKDVAIVTDIPGTT----------RDVLT------------------------ 259 (440)
Q Consensus 220 ~~v~i~G~pN~GKSSL~N~L~------~~~~aIVs~~~GTT----------RD~i~------------------------ 259 (440)
.-+.++|+|-+||||+.+++. |++.++|-==|+.- ||.|.
T Consensus 3 ~~~~ViGpaGSGKsT~~~~l~~~l~~~~r~~~vvNLDPA~e~~pY~~~iDIRd~i~~~dVM~~~~LGPNGali~~~e~l~ 82 (253)
T PRK13768 3 YIVFFLGTAGSGKTTLVGALSDWLEEQGYDVAIVNLDPAVEYLPYKPDIDVREYVSAREIMRKYGLGPNGALIASVDLLL 82 (253)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCHHHHCCHHHHHHHHCCCCCHHHHHHHHHHH
T ss_conf 18999899999889999999999997699759997898665899998863786178999998819896468999999999
Q ss_pred -------CCCCCCCEEEEEEECCHHCC--CCHHHHHHHHHHHHHHHHH--HCCEEECCCCC---CHHH----------HH
Q ss_conf -------12456835899950810002--4103566667888998503--01102013589---8566----------34
Q gi|254780809|r 260 -------IDLDLEGYLVKISDTAGIRE--TDDIVEKEGIKRTFLEVEN--ADLILLLKEIN---SKKE----------IS 315 (440)
Q Consensus 260 -------~~~~i~g~~~~l~DTaGir~--t~d~IE~~GI~ra~~~i~~--aDlil~v~D~~---~~~~----------~~ 315 (440)
..+.-.+..+.++||||--| |....= .+-.+.+.. --+++|++|+. ++.. ..
T Consensus 83 ~~~d~l~~~i~~~~~dY~i~D~PGQiElft~~~~~----~~i~~~L~~~~~~~~v~l~D~~~~~~~~~fiS~~L~a~s~m 158 (253)
T PRK13768 83 TKAEEIKEEIERLDADYVLVDTPGQMELFAFRESG----RYLVEKLSSGSKSLSVYLIDAVLAKDPSDFVSLLLLALSVQ 158 (253)
T ss_pred HHHHHHHHHHHHCCCCEEEEECCCCEEEEECCHHH----HHHHHHHHCCCCEEEEEEECHHHHCCHHHHHHHHHHHHHHH
T ss_conf 98999999985158875998268744322234079----99999986368628999845056378879999999999999
Q ss_pred HHCCCCCCCCCCCCCCCCCC
Q ss_conf 31289853222233344654
Q gi|254780809|r 316 FPKNIDFIFIGTKSDLYSTY 335 (440)
Q Consensus 316 ~~~~~~~i~V~NK~Dl~~~~ 335 (440)
..-..|++.|+||+|+.+..
T Consensus 159 ~~l~lP~inVlsK~Dll~~~ 178 (253)
T PRK13768 159 LRLGLPQIPVLNKIDLLSEE 178 (253)
T ss_pred HHCCCCEEEEEEHHHCCCHH
T ss_conf 97399979986768627837
No 261
>KOG0075 consensus
Probab=98.42 E-value=1.9e-07 Score=71.45 Aligned_cols=139 Identities=14% Similarity=0.141 Sum_probs=97.2
Q ss_pred HHHHHCCCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCCEEECCCCCCCCCEEEEEEECCHHCCCCHHHHHHHHHHHH
Q ss_conf 54320230243114663188899998552000234546872110001245683589995081000241035666678889
Q gi|254780809|r 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTF 293 (440)
Q Consensus 214 ~~l~~g~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTTRD~i~~~~~i~g~~~~l~DTaGir~t~d~IE~~GI~ra~ 293 (440)
....+-.+++++|.-|+|||||.|....-+- +..-+-|+..--..++=+.+.+.+.|-+|-|...--- .
T Consensus 15 ~f~k~emel~lvGLq~sGKtt~Vnvia~g~~---~edmiptvGfnmrkvtkgnvtik~wD~gGq~rfrsmW--------e 83 (186)
T KOG0075 15 SFWKEEMELSLVGLQNSGKTTLVNVIARGQY---LEDMIPTVGFNMRKVTKGNVTIKLWDLGGQPRFRSMW--------E 83 (186)
T ss_pred HHHHHEEEEEEEEECCCCCCEEEEEEECCCC---HHHHCCCCCCEEEEECCCCEEEEEEECCCCCCHHHHH--------H
T ss_conf 8877611588885324785258888750674---5664302463268831583699998369976088899--------9
Q ss_pred HHHHHHCCEEECCCCCCHHHHH-------------HHCCCCCCCCCCCCCCCCCCCHHHH----------------HHHH
Q ss_conf 9850301102013589856634-------------3128985322223334465420000----------------0133
Q gi|254780809|r 294 LEVENADLILLLKEINSKKEIS-------------FPKNIDFIFIGTKSDLYSTYTEEYD----------------HLIS 344 (440)
Q Consensus 294 ~~i~~aDlil~v~D~~~~~~~~-------------~~~~~~~i~V~NK~Dl~~~~~~~~~----------------~~IS 344 (440)
..-...|.++|++|+.++.... ...+.|+++..||.|+......... +.||
T Consensus 84 rycR~v~aivY~VDaad~~k~~~sR~EL~~LL~k~~l~gip~LVLGnK~d~~~AL~~~~li~rmgL~sitdREvcC~siS 163 (186)
T KOG0075 84 RYCRGVSAIVYVVDAADPDKLEASRSELHDLLDKPSLTGIPLLVLGNKIDLPGALSKIALIERMGLSSITDREVCCFSIS 163 (186)
T ss_pred HHHCCCCEEEEEEECCCCCCCHHHHHHHHHHHCCHHHCCCCEEEECCCCCCCCCCCHHHHHHHHCCCCCCCCEEEEEEEE
T ss_conf 98603868999961678653431299999885032114871799625566755322789999838452446457899998
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q ss_conf 3323235899999999963
Q gi|254780809|r 345 SFTGEGLEELINKIKSILS 363 (440)
Q Consensus 345 aktg~Gi~~L~~~I~~~l~ 363 (440)
||...+||..++-|.+.-.
T Consensus 164 cke~~Nid~~~~Wli~hsk 182 (186)
T KOG0075 164 CKEKVNIDITLDWLIEHSK 182 (186)
T ss_pred ECCCCCHHHHHHHHHHHHH
T ss_conf 7687568999999999767
No 262
>cd04167 Snu114p Snu114p subfamily. Snu114p is one of several proteins that make up the U5 small nuclear ribonucleoprotein (snRNP) particle. U5 is a component of the spliceosome, which catalyzes the splicing of pre-mRNA to remove introns. Snu114p is homologous to EF-2, but typically contains an additional N-terminal domain not found in Ef-2. This protein is part of the GTP translation factor family and the Ras superfamily, characterized by five G-box motifs.
Probab=98.40 E-value=6.1e-07 Score=67.95 Aligned_cols=104 Identities=22% Similarity=0.289 Sum_probs=65.6
Q ss_pred CEEEECCCCCCHHHHHHHHHCCHHCCC---CCCCCCCE--EEC----CCCC--------------CCCCEEEEEEECCHH
Q ss_conf 024311466318889999855200023---45468721--100----0124--------------568358999508100
Q gi|254780809|r 221 KIVILGHSNAGKSSLFNALAKKDVAIV---TDIPGTTR--DVL----TIDL--------------DLEGYLVKISDTAGI 277 (440)
Q Consensus 221 ~v~i~G~pN~GKSSL~N~L~~~~~aIV---s~~~GTTR--D~i----~~~~--------------~i~g~~~~l~DTaGi 277 (440)
.|+|+|..-.|||||.-+|+..-..+. ....+.|| |.. +..+ ....+.+.|+||||-
T Consensus 2 NvaiigHvdhGKTTL~d~Ll~~t~~~~~~~~~~~~~~~~~D~~~~E~eRgiTI~s~~~sl~~~~~~~k~~~inlIDTPGH 81 (213)
T cd04167 2 NVAIAGHLHHGKTSLLDMLIEQTHDLTPSGKDGWKPLRYTDIRKDEQERGISIKSSPISLVLPDSKGKSYLFNIIDTPGH 81 (213)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEECCCHHHHHHCCCEECCEEEEEEECCCCCEEEEEEEECCCC
T ss_conf 59998278989899999999973445554044421135751646654203558614599998256675057877889872
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHCCEEECCCCCCHHH--------HHHHCCCCCCCCCCCCCCC
Q ss_conf 024103566667888998503011020135898566--------3431289853222233344
Q gi|254780809|r 278 RETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE--------ISFPKNIDFIFIGTKSDLY 332 (440)
Q Consensus 278 r~t~d~IE~~GI~ra~~~i~~aDlil~v~D~~~~~~--------~~~~~~~~~i~V~NK~Dl~ 332 (440)
-+-.+++ ...+.-+|..++|+|+.+... .....+.|.++|+||+|..
T Consensus 82 ~dF~~ev--------~~al~~~DgailVVDa~eGv~~qT~~~l~~a~~~~l~~ilviNKiDRL 136 (213)
T cd04167 82 VNFMDEV--------AAALRLSDGVVLVVDVVEGVTSNTERLIRHAILEGLPIVLVINKIDRL 136 (213)
T ss_pred HHHHHHH--------HHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCC
T ss_conf 4179999--------988863776799998788875779999999998699989999882343
No 263
>KOG1707 consensus
Probab=98.40 E-value=1.6e-06 Score=64.97 Aligned_cols=136 Identities=18% Similarity=0.249 Sum_probs=77.6
Q ss_pred HHHHHCCCEEEECCCCCCHHHHHHHHHCCHHCCCCCC----CCCCEEECCCCCCCCCEEEEEEECCHHCCCCHHHHHHHH
Q ss_conf 5432023024311466318889999855200023454----687211000124568358999508100024103566667
Q gi|254780809|r 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDI----PGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGI 289 (440)
Q Consensus 214 ~~l~~g~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~----~GTTRD~i~~~~~i~g~~~~l~DTaGir~t~d~IE~~GI 289 (440)
..-|+-+.--.+|++|+|||.|++.++|+.-+= +++ |..+-+.++.. +-..+.+.--+|.+ +.+...
T Consensus 420 ~~~R~Vf~C~V~G~k~~GKs~lL~sflgr~~~~-~~~~~~~~~~avn~v~~~---g~~k~LiL~ei~~~-~~~~l~---- 490 (625)
T KOG1707 420 QTDRKVFQCFVVGPKNCGKSALLQSFLGRSMSD-NNTGTTKPRYAVNSVEVK---GQQKYLILREIGED-DQDFLT---- 490 (625)
T ss_pred CCCCEEEEEEEECCCCCCHHHHHHHHHCCCCCC-CCCCCCCCCEEEEEEEEC---CCCCEEEEEECCCC-CCCCCC----
T ss_conf 553014478887777774289999886334323-334677876032432541---54125888644754-233456----
Q ss_pred HHHHHHHHHHCCEEECCCCCCHHHHHHH----------CCCCCCCCCCCCCCCCCCCH--------------HHHHHHHH
Q ss_conf 8889985030110201358985663431----------28985322223334465420--------------00001333
Q gi|254780809|r 290 KRTFLEVENADLILLLKEINSKKEISFP----------KNIDFIFIGTKSDLYSTYTE--------------EYDHLISS 345 (440)
Q Consensus 290 ~ra~~~i~~aDlil~v~D~~~~~~~~~~----------~~~~~i~V~NK~Dl~~~~~~--------------~~~~~ISa 345 (440)
.++ ..+|++.+++|.+++....+. ...|.+.|..|+|+-+.... ...+.+|+
T Consensus 491 --~ke--~~cDv~~~~YDsS~p~sf~~~a~v~~~~~~~~~~Pc~~va~K~dlDe~~Q~~~iqpde~~~~~~i~~P~~~S~ 566 (625)
T KOG1707 491 --SKE--AACDVACLVYDSSNPRSFEYLAEVYNKYFDLYKIPCLMVATKADLDEVPQRYSIQPDEFCRQLGLPPPIHISS 566 (625)
T ss_pred --CCC--CCEEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHCCCCCCHHHHHHHCCCCCCEEECC
T ss_conf --754--2003688850467732789999999874432578469995214533121035788388899718999805135
Q ss_pred HHHHHHHHHHHHHHHHHH
Q ss_conf 323235899999999963
Q gi|254780809|r 346 FTGEGLEELINKIKSILS 363 (440)
Q Consensus 346 ktg~Gi~~L~~~I~~~l~ 363 (440)
++... ..|...|.....
T Consensus 567 ~~~~s-~~lf~kL~~~A~ 583 (625)
T KOG1707 567 KTLSS-NELFIKLATMAQ 583 (625)
T ss_pred CCCCC-CHHHHHHHHHHH
T ss_conf 78887-569999998600
No 264
>pfam03193 DUF258 Protein of unknown function, DUF258.
Probab=98.35 E-value=6.5e-07 Score=67.76 Aligned_cols=78 Identities=31% Similarity=0.335 Sum_probs=52.4
Q ss_pred CCCEEEECCCCCCHHHHHHHHHCCHHC---CCCCCCC----CCEEECCCCCCCCCEEEEEEECCHHCCCC-HHHHHHHHH
Q ss_conf 230243114663188899998552000---2345468----72110001245683589995081000241-035666678
Q gi|254780809|r 219 GYKIVILGHSNAGKSSLFNALAKKDVA---IVTDIPG----TTRDVLTIDLDLEGYLVKISDTAGIRETD-DIVEKEGIK 290 (440)
Q Consensus 219 g~~v~i~G~pN~GKSSL~N~L~~~~~a---IVs~~~G----TTRD~i~~~~~i~g~~~~l~DTaGir~t~-d~IE~~GI~ 290 (440)
|-..+++|+..||||||+|+|++.... -||..-| |||- ..-+.+.+ --.++||||+|+-. ..+++..+.
T Consensus 35 ~k~sv~~G~SGVGKSTLiN~L~~~~~~~t~~iS~~~~rGkHTTt~--~~l~~l~~-gg~iiDTPG~r~f~l~~~~~~~l~ 111 (161)
T pfam03193 35 GKTSVLAGQSGVGKSTLLNALLPELDLRTGEISEKLGRGRHTTTH--VELFPLPG-GGLLIDTPGFRELGLWHLDPEELA 111 (161)
T ss_pred CCEEEEECCCCCCHHHHHHHHCCHHHHHHHHHHHHHCCCCCEEEE--EEEEEECC-CCEEEECCCCCCCCCCCCCHHHHH
T ss_conf 985999889998899999885634435777535886388511211--37998079-958985898762577778989999
Q ss_pred HHHHHHHHH
Q ss_conf 889985030
Q gi|254780809|r 291 RTFLEVENA 299 (440)
Q Consensus 291 ra~~~i~~a 299 (440)
.....+...
T Consensus 112 ~~F~e~~~~ 120 (161)
T pfam03193 112 EYFPEFREL 120 (161)
T ss_pred HHHHHHHHH
T ss_conf 970999998
No 265
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=98.35 E-value=6.1e-07 Score=67.96 Aligned_cols=77 Identities=30% Similarity=0.331 Sum_probs=51.6
Q ss_pred CCCEEEECCCCCCHHHHHHHHHCCHHCC---CCCCC----CCCEEECCCCCCCCCEEEEEEECCHHCCCC-HHHHHHHHH
Q ss_conf 2302431146631888999985520002---34546----872110001245683589995081000241-035666678
Q gi|254780809|r 219 GYKIVILGHSNAGKSSLFNALAKKDVAI---VTDIP----GTTRDVLTIDLDLEGYLVKISDTAGIRETD-DIVEKEGIK 290 (440)
Q Consensus 219 g~~v~i~G~pN~GKSSL~N~L~~~~~aI---Vs~~~----GTTRD~i~~~~~i~g~~~~l~DTaGir~t~-d~IE~~GI~ 290 (440)
|-.++++|+.-||||||+|+|++....- ||..- .|||- ..-+.+.+ --.++||||+|+-. ..++..++.
T Consensus 161 ~k~~v~~G~SGvGKSSLiN~L~~~~~~~t~~vs~~~~rGrHTTt~--~~L~~l~~-gg~iiDTPG~r~~~l~~~~~~~l~ 237 (287)
T cd01854 161 GKTSVLVGQSGVGKSTLINALLPDLDLATGEISEKLGRGRHTTTH--RELFPLPG-GGLLIDTPGFREFGLLHIDPEELA 237 (287)
T ss_pred CCEEEEECCCCCCHHHHHHHHCCHHHHHHHHHHHHHCCCCEEEEE--EEEEECCC-CCEEEECCCCCCCCCCCCCHHHHH
T ss_conf 988999889988889999874621212566667760898501415--79999289-958986898763567778989998
Q ss_pred HHHHHHHH
Q ss_conf 88998503
Q gi|254780809|r 291 RTFLEVEN 298 (440)
Q Consensus 291 ra~~~i~~ 298 (440)
..+..+..
T Consensus 238 ~~F~ei~~ 245 (287)
T cd01854 238 HYFPEFRE 245 (287)
T ss_pred HHCHHHHH
T ss_conf 86878999
No 266
>KOG1487 consensus
Probab=98.34 E-value=5.2e-07 Score=68.45 Aligned_cols=143 Identities=22% Similarity=0.279 Sum_probs=101.4
Q ss_pred HHHHCC-CEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCCEEECCCCCCCCCEEEEEEECCHHCCC-CHHHHHHHHHHH
Q ss_conf 432023-024311466318889999855200023454687211000124568358999508100024-103566667888
Q gi|254780809|r 215 IIRNGY-KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET-DDIVEKEGIKRT 292 (440)
Q Consensus 215 ~l~~g~-~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTTRD~i~~~~~i~g~~~~l~DTaGir~t-~d~IE~~GI~ra 292 (440)
..+.|. +|.++|-|.+|||||++.|.|.. +=|..+-|||--.|.+.+.++|-++.|.|.|||-|. +| |--|-
T Consensus 54 V~ktg~a~vg~vgFPSvGksTl~~~l~g~~-s~vasyefttl~~vpG~~~y~gaKiqlldlpgiiegakd-----gkgrg 127 (358)
T KOG1487 54 VAKTGDARVGFVGFPSVGKSTLLSKLTGTF-SEVAAYEFTTLTTVPGVIRYKGAKIQLLDLPGIIEGAKD-----GKGRG 127 (358)
T ss_pred CEEECCEEEEEEECCCCCHHHHHHHHCCCC-CCCCCCCCEEEEEECCEEECCCCCEEEECCCCHHCCCCC-----CCCCC
T ss_conf 010124155378537666243322301888-765543322689706667404562343048540014646-----78876
Q ss_pred H---HHHHHHCCEEECCCCCCHH---------------------------------------------------------
Q ss_conf 9---9850301102013589856---------------------------------------------------------
Q gi|254780809|r 293 F---LEVENADLILLLKEINSKK--------------------------------------------------------- 312 (440)
Q Consensus 293 ~---~~i~~aDlil~v~D~~~~~--------------------------------------------------------- 312 (440)
+ ..+..+++++.|.|.-.+.
T Consensus 128 ~qviavartcnli~~vld~~kp~~hk~~ie~eleg~girlnk~pp~i~~kkKdkgGInlt~~~LdlD~~rsil~eyR~hs 207 (358)
T KOG1487 128 KQVIAVARTCNLIFIVLDVLKPLSHKKIIEKELEGFGIRLNKQPPNIGTKKKDKGGINLTGTHLDLDLQRSILSEYRIHS 207 (358)
T ss_pred CEEEEEEECCCEEEEEEECCCCCCHHHHHHHHHHCCEEECCCCCCCCCCCCCCCCCEEEECCHHHHHHHHHHHHHHHHCC
T ss_conf 07888830165899871106752178899876310366614889976301244474300132002788999988764310
Q ss_pred -------------HHHHHC----CCCCCCCCCCCCCCCCCCHH------HHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf -------------634312----89853222233344654200------0001333323235899999999963
Q gi|254780809|r 313 -------------EISFPK----NIDFIFIGTKSDLYSTYTEE------YDHLISSFTGEGLEELINKIKSILS 363 (440)
Q Consensus 313 -------------~~~~~~----~~~~i~V~NK~Dl~~~~~~~------~~~~ISaktg~Gi~~L~~~I~~~l~ 363 (440)
-+...+ ..|.++++||+|-.+-..-+ ..+.+||.++-++|+|++.+.+.+.
T Consensus 208 Adi~Lr~DaT~DdLIdvVegnr~yVp~iyvLNkIdsISiEELdii~~iphavpISA~~~wn~d~lL~~mweyL~ 281 (358)
T KOG1487 208 ADIALRFDATADDLIDVVEGNRIYVPCIYVLNKIDSISIEELDIIYTIPHAVPISAHTGWNFDKLLEKMWEYLK 281 (358)
T ss_pred HHEEEECCCCHHHHHHHHCCCCEEEEEEEEECCCCEEEEECCCEEEECCCEEECCCCCCCCHHHHHHHHHHCCH
T ss_conf 23056357642224322005731566555622235012101320110563245245666556788988730600
No 267
>PRK00098 ribosome-associated GTPase; Reviewed
Probab=98.34 E-value=6.4e-07 Score=67.81 Aligned_cols=76 Identities=33% Similarity=0.444 Sum_probs=48.3
Q ss_pred CCCEEEECCCCCCHHHHHHHHHCCHHC---CCCCCCC----CCEEECCCCCCCCCEEEEEEECCHHCCCC-HHHHHHHHH
Q ss_conf 230243114663188899998552000---2345468----72110001245683589995081000241-035666678
Q gi|254780809|r 219 GYKIVILGHSNAGKSSLFNALAKKDVA---IVTDIPG----TTRDVLTIDLDLEGYLVKISDTAGIRETD-DIVEKEGIK 290 (440)
Q Consensus 219 g~~v~i~G~pN~GKSSL~N~L~~~~~a---IVs~~~G----TTRD~i~~~~~i~g~~~~l~DTaGir~t~-d~IE~~GI~ 290 (440)
|-..+++|+.-||||||+|+|++...- -||..-| |||-.---.+. +| .++||||+|+-. ..++...+.
T Consensus 164 ~k~sv~~G~SGVGKSSLiN~L~~~~~~~t~~is~~~~rGrHTTt~~~l~~l~-~G---~iiDTPG~r~~~l~~~~~~~l~ 239 (298)
T PRK00098 164 GKVTVLAGQSGVGKSTLLNALVPELELKTGEISEALGRGKHTTTHVELYDLP-GG---LLIDTPGFSSFGLEHLEAEDLE 239 (298)
T ss_pred CCEEEEECCCCCCHHHHHHHHCCHHHHHHHHHHHHCCCCCEEEEEEEEEECC-CC---EEEECCCCCCCCCCCCCHHHHH
T ss_conf 9869998789887888887607144456675566518972133046899869-97---5981898775566779979998
Q ss_pred HHHHHHHH
Q ss_conf 88998503
Q gi|254780809|r 291 RTFLEVEN 298 (440)
Q Consensus 291 ra~~~i~~ 298 (440)
.+...+.+
T Consensus 240 ~~F~e~~~ 247 (298)
T PRK00098 240 HAFPEFRP 247 (298)
T ss_pred HHHHHHHH
T ss_conf 86788999
No 268
>PTZ00327 eukaryotic translation initiation factor 2 gamma subunit; Provisional
Probab=98.34 E-value=2.3e-06 Score=63.91 Aligned_cols=138 Identities=20% Similarity=0.153 Sum_probs=86.2
Q ss_pred CCEEEECCCCCCHHHHHHHHHCCH---------HCCCC--C-------------CCCCCEEECCCC-----------CCC
Q ss_conf 302431146631888999985520---------00234--5-------------468721100012-----------456
Q gi|254780809|r 220 YKIVILGHSNAGKSSLFNALAKKD---------VAIVT--D-------------IPGTTRDVLTID-----------LDL 264 (440)
Q Consensus 220 ~~v~i~G~pN~GKSSL~N~L~~~~---------~aIVs--~-------------~~GTTRD~i~~~-----------~~i 264 (440)
+.|..+|....|||||..+|+|.. |.|.= . .|+.-+.+-... ..-
T Consensus 38 vNIGtiGHVDHGKTTLvkALTgv~t~r~~eE~~RgiTI~LGya~~kiykc~~~~~p~~y~~~~s~~~~~~~c~~c~~~~t 117 (460)
T PTZ00327 38 INIGTIGHVAHGKSTVVKALSGVKTVRFHREKVRNITIKLGYANAKIYKCTKCPPPACYKSYPSSKPDNPQCPGCGHKMT 117 (460)
T ss_pred EEEEEECCCCCCHHHHHHHHHCCCHHHCHHHHHCCCEEEECCCCEEEECCCCCCCCCCEECCCCCCCCCCCCCCCCCCCC
T ss_conf 18988746289899999998677501065678758721205433011136567763101014666655544555565431
Q ss_pred CCEEEEEEECCHHCCCCHHHHHHHHHHHHHHHHHHCCEEECCCCCCHH-HH---------HHHCCCCCCCCCCCCCCCCC
Q ss_conf 835899950810002410356666788899850301102013589856-63---------43128985322223334465
Q gi|254780809|r 265 EGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK-EI---------SFPKNIDFIFIGTKSDLYST 334 (440)
Q Consensus 265 ~g~~~~l~DTaGir~t~d~IE~~GI~ra~~~i~~aDlil~v~D~~~~~-~~---------~~~~~~~~i~V~NK~Dl~~~ 334 (440)
....+.++|.||= .+. |.-.+.-+...|..++|+++++.- .. ....-++++++.||+||.+.
T Consensus 118 ~~Rh~s~VDcPGH---~~l-----~~nmi~Ga~~mD~aiLvvaa~eg~P~pQT~EHl~~~~~~gi~~~iv~~nK~DlV~~ 189 (460)
T PTZ00327 118 LKRHVSFVDCPGH---DIL-----MATMLNGAAVMDAALLLIAANESCPQPQTSEHLAAVEIMKLKHIIILQNKIDLIKE 189 (460)
T ss_pred CCEEEEEEECCCH---HHH-----HHHHHHCHHHCCEEEEEEECCCCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCCCH
T ss_conf 2204899868987---999-----99987476337679999986888876468999999997289719999535445588
Q ss_pred CCH------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 420------------------0000133332323589999999996322
Q gi|254780809|r 335 YTE------------------EYDHLISSFTGEGLEELINKIKSILSNK 365 (440)
Q Consensus 335 ~~~------------------~~~~~ISaktg~Gi~~L~~~I~~~l~~~ 365 (440)
..- .+.+.+||..+.|++.|+++|.+.+...
T Consensus 190 e~~~~~~~ei~~~l~~t~~~~~PIIpvSA~~~~nid~L~~~i~~~ip~P 238 (460)
T PTZ00327 190 VQALDQYEEIRNFIDGTIAENAPIIPISAQLKYNIDVLLEYICTQIPIP 238 (460)
T ss_pred HHHHHHHHHHHHHHCCCCCCCCCEEECCHHHCCCHHHHHHHHHHHCCCC
T ss_conf 9999999999998525767799987565445058799999999758999
No 269
>KOG0458 consensus
Probab=98.32 E-value=6.5e-07 Score=67.74 Aligned_cols=112 Identities=26% Similarity=0.310 Sum_probs=76.8
Q ss_pred HCCCEEEECCCCCCHHHHHHHHHC---C-----------HH----------CCCCC------CCCCCEEECCCCCCCCCE
Q ss_conf 023024311466318889999855---2-----------00----------02345------468721100012456835
Q gi|254780809|r 218 NGYKIVILGHSNAGKSSLFNALAK---K-----------DV----------AIVTD------IPGTTRDVLTIDLDLEGY 267 (440)
Q Consensus 218 ~g~~v~i~G~pN~GKSSL~N~L~~---~-----------~~----------aIVs~------~~GTTRD~i~~~~~i~g~ 267 (440)
.-+..+++|..++|||||+-+|+- . +. |-|-| .-|-|-|+=...++-.-.
T Consensus 176 ~~l~lvv~GhVdaGKSTLmG~lLydLg~i~~~~m~kl~~es~~~Gk~Sf~yawiLDeT~eERerGvTm~v~~~~fes~~~ 255 (603)
T KOG0458 176 DHLNLVVLGHVDAGKSTLMGHLLYDLGEISSRSMHKLERESKNLGKSSFAYAWILDETKEERERGVTMDVKTTWFESKSK 255 (603)
T ss_pred CCEEEEEEECCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHCCEEEEEEEEEEECCCE
T ss_conf 61589997023454111023788873686578899999998752875302567743631245436367754689846861
Q ss_pred EEEEEECCHHCCCCHHHHHHHHHHHHHHHHHHCCEEECCCCCCHHHH----------------HHHCCCCCCCCCCCCCC
Q ss_conf 89995081000241035666678889985030110201358985663----------------43128985322223334
Q gi|254780809|r 268 LVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEI----------------SFPKNIDFIFIGTKSDL 331 (440)
Q Consensus 268 ~~~l~DTaGir~t~d~IE~~GI~ra~~~i~~aDlil~v~D~~~~~~~----------------~~~~~~~~i~V~NK~Dl 331 (440)
.++|+|+||.++- |.-++.-+..||+-++|+|++...+. ..+.-..+++++||.|+
T Consensus 256 ~~tliDaPGhkdF--------i~nmi~g~sqaD~avLvvd~s~~~FE~gfd~~gQtrEha~llr~Lgi~qlivaiNKmD~ 327 (603)
T KOG0458 256 IVTLIDAPGHKDF--------IPNMISGASQADVAVLVVDASTGEFESGFDPGGQTREHALLLRSLGISQLIVAINKMDL 327 (603)
T ss_pred EEEEECCCCCCCC--------CHHHHCCCCCCCEEEEEEECCCCHHHHCCCCCCCHHHHHHHHHHCCCCEEEEEEECCCC
T ss_conf 6998607874235--------52343362215668999987754333134879865899999987495258888630101
Q ss_pred CCCCCH
Q ss_conf 465420
Q gi|254780809|r 332 YSTYTE 337 (440)
Q Consensus 332 ~~~~~~ 337 (440)
.+-...
T Consensus 328 V~Wsq~ 333 (603)
T KOG0458 328 VSWSQD 333 (603)
T ss_pred CCCCHH
T ss_conf 275388
No 270
>cd01850 CDC_Septin CDC/Septin. Septins are a conserved family of GTP-binding proteins associated with diverse processes in dividing and non-dividing cells. They were first discovered in the budding yeast S. cerevisiae as a set of genes (CDC3, CDC10, CDC11 and CDC12) required for normal bud morphology. Septins are also present in metazoan cells, where they are required for cytokinesis in some systems, and implicated in a variety of other processes involving organization of the cell cortex and exocytosis. In humans, 12 septin genes generate dozens of polypeptides, many of which comprise heterooligomeric complexes. Since septin mutants are commonly defective in cytokinesis and formation of the neck formation of the neck filaments/septin rings, septins have been considered to be the primary constituents of the neck filaments. Septins belong to the GTPase superfamily for their conserved GTPase motifs and enzymatic activities.
Probab=98.29 E-value=2.5e-06 Score=63.67 Aligned_cols=114 Identities=23% Similarity=0.389 Sum_probs=68.4
Q ss_pred CCEEEECCCCCCHHHHHHHHHCCHHCCCCC---------CCCCCEEECC--CCCCCCCE--EEEEEECCHHCCCCHH---
Q ss_conf 302431146631888999985520002345---------4687211000--12456835--8999508100024103---
Q gi|254780809|r 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTD---------IPGTTRDVLT--IDLDLEGY--LVKISDTAGIRETDDI--- 283 (440)
Q Consensus 220 ~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~---------~~GTTRD~i~--~~~~i~g~--~~~l~DTaGir~t~d~--- 283 (440)
+++.++|....|||||+|.|++.+.. .++ .+.|+ .+.+ ..+.-+|+ .++++||||+.+.-|.
T Consensus 5 fnimVvG~sGlGKsTfiNtLf~~~~~-~~~~~~~~~~~~~~~t~-~i~~~~~~i~e~g~~l~LtviDTpGfGd~i~n~~~ 82 (276)
T cd01850 5 FNIMVVGESGLGKSTFINTLFNTKLI-PSDYPPDPAEEHIDKTV-EIKSSKAEIEENGVKLKLTVIDTPGFGDNINNSDC 82 (276)
T ss_pred EEEEEECCCCCCHHHHHHHHHCCCCC-CCCCCCCCHHHCCCCCC-EEEEEEEEEEECCEEEEEEEEECCCCCCCCCHHHH
T ss_conf 99999768999889999997478577-87777881320568882-58999999963998999999976884122360340
Q ss_pred -------HH---------HHHHHHH-HHHHHHHCCEEECCCCCC----HHHHHHH----CCCCCCCCCCCCCCCCCC
Q ss_conf -------56---------6667888-998503011020135898----5663431----289853222233344654
Q gi|254780809|r 284 -------VE---------KEGIKRT-FLEVENADLILLLKEINS----KKEISFP----KNIDFIFIGTKSDLYSTY 335 (440)
Q Consensus 284 -------IE---------~~GI~ra-~~~i~~aDlil~v~D~~~----~~~~~~~----~~~~~i~V~NK~Dl~~~~ 335 (440)
|+ ...+.|. .-.-..-++.||.+.++. +-++..+ +..++|.|+.|+|.....
T Consensus 83 ~~~I~~yI~~qf~~yl~eE~~i~R~~~~~D~RVH~cLYFI~Ptgh~L~~lDi~~mk~Ls~~vNvIPVIaKADtlT~~ 159 (276)
T cd01850 83 WKPIVDYIDDQFDQYLREESRIKRNPRIPDTRVHACLYFIEPTGHGLKPLDIEFMKRLSKRVNIIPVIAKADTLTPE 159 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEEECCCCCCCCHHHHHHHHHHCCCCCEEEEEECCCCCCHH
T ss_conf 99999999999999999985314578887774489999967888888799999999962756456678516669999
No 271
>PRK12288 ribosome-associated GTPase; Reviewed
Probab=98.25 E-value=1.5e-06 Score=65.33 Aligned_cols=75 Identities=31% Similarity=0.409 Sum_probs=45.0
Q ss_pred CCCEEEECCCCCCHHHHHHHHHCCHH---CCCCCCC----CCCEEECCCCCCCCCEEEEEEECCHHCCCC-HHHHHHHHH
Q ss_conf 23024311466318889999855200---0234546----872110001245683589995081000241-035666678
Q gi|254780809|r 219 GYKIVILGHSNAGKSSLFNALAKKDV---AIVTDIP----GTTRDVLTIDLDLEGYLVKISDTAGIRETD-DIVEKEGIK 290 (440)
Q Consensus 219 g~~v~i~G~pN~GKSSL~N~L~~~~~---aIVs~~~----GTTRD~i~~~~~i~g~~~~l~DTaGir~t~-d~IE~~GI~ 290 (440)
|-..+++|+.-||||||+|+|+.... .=||..- .|||-.---.+.-+| .++||||+|+-. ..++...+.
T Consensus 207 ~ktsvf~GqSGVGKSSLiN~L~p~~~~~tgeIS~~~~~GrHTTt~~~L~~l~~gG---~lIDTPG~ref~L~~i~~~~l~ 283 (344)
T PRK12288 207 GRISIFVGQSGVGKSSLINALLPEAEILVGDVSENSGLGQHTTTTARLYHFPHGG---DLIDSPGVREFGLWHLEPEQVT 283 (344)
T ss_pred CCEEEEEECCCCCHHHHHHHCCCHHHHHHHHHHHHCCCCCCEEEEEEEEECCCCC---EEEECCCCCCCCCCCCCHHHHH
T ss_conf 7859998068767888876107533422320143338866401168999928998---7973898765577778989999
Q ss_pred HHHHHH
Q ss_conf 889985
Q gi|254780809|r 291 RTFLEV 296 (440)
Q Consensus 291 ra~~~i 296 (440)
..+..+
T Consensus 284 ~~F~Ef 289 (344)
T PRK12288 284 QGFIEF 289 (344)
T ss_pred HHCHHH
T ss_conf 867789
No 272
>cd01856 YlqF YlqF. Proteins of the YlqF family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. The YlqF subfamily is represented in a phylogenetically diverse array of bacteria (including gram-positive bacteria, proteobacteria, Synechocystis, Borrelia, and Thermotoga) and in all eukaryotes.
Probab=98.25 E-value=1.3e-06 Score=65.64 Aligned_cols=78 Identities=15% Similarity=0.249 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHHHCCEEECCCCCC------HHHHHHHCCCCCCCCCCCCCCCCCCCHH-----------HHHHHHHHHHH
Q ss_conf 667888998503011020135898------5663431289853222233344654200-----------00013333232
Q gi|254780809|r 287 EGIKRTFLEVENADLILLLKEINS------KKEISFPKNIDFIFIGTKSDLYSTYTEE-----------YDHLISSFTGE 349 (440)
Q Consensus 287 ~GI~ra~~~i~~aDlil~v~D~~~------~~~~~~~~~~~~i~V~NK~Dl~~~~~~~-----------~~~~ISaktg~ 349 (440)
.+.++..+.++.||+||+|+|+.. +......+++|.|+|+||+||.+..... ..+.+||+.+.
T Consensus 8 k~~~~~~~~l~~sDlIl~V~DaR~pl~~~~~~l~~~~~~K~~ilV~NK~DL~~~~~~~~~~~~~~~~~~~~~~~sa~~~~ 87 (171)
T cd01856 8 KALRQIKEKLKLVDLVIEVRDARIPLSSRNPLLEKILGNKPRIIVLNKADLADPKKTKKWLKYFESKGEKVLFVNAKSGK 87 (171)
T ss_pred HHHHHHHHHHHHCCEEEEEEECCCCCCCCCHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCC
T ss_conf 99999999998699999999898888765289999976898899985555589789999999998079967998422665
Q ss_pred HHHHHHHHHHHHHHH
Q ss_conf 358999999999632
Q gi|254780809|r 350 GLEELINKIKSILSN 364 (440)
Q Consensus 350 Gi~~L~~~I~~~l~~ 364 (440)
|++.|++.+.+.+..
T Consensus 88 g~~~l~~~i~~~~~~ 102 (171)
T cd01856 88 GVKKLLKAAKKLLKD 102 (171)
T ss_pred CHHHHHHHHHHHHHH
T ss_conf 789999999997354
No 273
>cd01852 AIG1 AIG1 (avrRpt2-induced gene 1). This represents Arabidoposis protein AIG1 that appears to be involved in plant resistance to bacteria. The Arabidopsis disease resistance gene RPS2 is involved in recognition of bacterial pathogens carrying the avirulence gene avrRpt2. AIG1 exhibits RPS2- and avrRpt1-dependent induction early after infection with Pseudomonas syringae carrying avrRpt2. This subfamily also includes IAN-4 protein, which has GTP-binding activity and shares sequence homology with a novel family of putative GTP-binding proteins: the immuno-associated nucleotide (IAN) family. The evolutionary conservation of the IAN family provides a unique example of a plant pathogen response gene conserved in animals. The IAN/IMAP subfamily has been proposed to regulate apoptosis in vertebrates and angiosperm plants, particularly in relation to cancer, diabetes, and infections. The human IAN genes were renamed GIMAP (GTPase of the immunity associated proteins).
Probab=98.25 E-value=1.6e-06 Score=64.96 Aligned_cols=116 Identities=21% Similarity=0.195 Sum_probs=75.4
Q ss_pred CCEEEECCCCCCHHHHHHHHHCCHHCCCCCC-CCCCEEECCCCCCCCCEEEEEEECCHHCCCCHHHHH--HHHHHHHHH-
Q ss_conf 3024311466318889999855200023454-687211000124568358999508100024103566--667888998-
Q gi|254780809|r 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDI-PGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEK--EGIKRTFLE- 295 (440)
Q Consensus 220 ~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~-~GTTRD~i~~~~~i~g~~~~l~DTaGir~t~d~IE~--~GI~ra~~~- 295 (440)
.|++|+|++.+||||.-|.++|++.--...- ...|++.....-.++|..+.++||||+-++...-|. .-|.+....
T Consensus 1 LrIvLlGktGsGKSstgNtILG~~~F~s~~~~~svT~~c~~~~~~~~gr~v~VIDTPg~~dt~~~~~~~~~ei~~~~~l~ 80 (196)
T cd01852 1 LRLVLVGKTGAGKSATGNTILGREVFESKLSASSVTKTCQKESAVWDGRRVNVIDTPGLFDTSVSPEQLSKEIVRCLSLS 80 (196)
T ss_pred CEEEEECCCCCCCHHHHEEECCCCCCCCCCCCCCCCEEEEEEEEEECCCEEEEEECCCCCCCCCCHHHHHHHHHHHHHHC
T ss_conf 98999789998615340325687666788999987558888889988937999967763565589799999999999843
Q ss_pred HHHHCCEEECCCCCC--HHHHHHH----------CCCCCCCCCCCCCCCCCC
Q ss_conf 503011020135898--5663431----------289853222233344654
Q gi|254780809|r 296 VENADLILLLKEINS--KKEISFP----------KNIDFIFIGTKSDLYSTY 335 (440)
Q Consensus 296 i~~aDlil~v~D~~~--~~~~~~~----------~~~~~i~V~NK~Dl~~~~ 335 (440)
....+++|+|+.... ..+.... .-+-.|++++-.|.....
T Consensus 81 ~pGpHa~LLVi~~~rfT~ee~~~v~~i~~~FGe~~~~~tivLFT~~D~L~~~ 132 (196)
T cd01852 81 APGPHAFLLVVPLGRFTEEEEQAVETLQELFGEKVLDHTIVLFTRGDDLEGG 132 (196)
T ss_pred CCCCEEEEEEEECCCCCHHHHHHHHHHHHHHCHHHHHHEEEEEECCCCCCCC
T ss_conf 8997399999978988989999999999997778685289999654011688
No 274
>KOG0087 consensus
Probab=98.25 E-value=2.9e-06 Score=63.29 Aligned_cols=134 Identities=25% Similarity=0.348 Sum_probs=83.1
Q ss_pred HHHCCCEEEECCCCCCHHHHHHHHHCCHHCCCCCC-CCCCEEECCCCCCCCC--EEEEEEECCHHCCCCHHHHHH-HHHH
Q ss_conf 32023024311466318889999855200023454-6872110001245683--589995081000241035666-6788
Q gi|254780809|r 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDI-PGTTRDVLTIDLDLEG--YLVKISDTAGIRETDDIVEKE-GIKR 291 (440)
Q Consensus 216 l~~g~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~-~GTTRD~i~~~~~i~g--~~~~l~DTaGir~t~d~IE~~-GI~r 291 (440)
+--.++|+++|-|+||||-|+-+.+..+-.+=|-- -| -+.-+..+.++| +...+.||||- |+. .|
T Consensus 11 ~dylFKiVliGDS~VGKsnLlsRftrnEF~~~SksTIG--vef~t~t~~vd~k~vkaqIWDTAGQ-------ERyrAi-- 79 (222)
T KOG0087 11 YDYLFKIVLIGDSAVGKSNLLSRFTRNEFSLESKSTIG--VEFATRTVNVDGKTVKAQIWDTAGQ-------ERYRAI-- 79 (222)
T ss_pred CCEEEEEEEECCCCCCHHHHHHHHCCCCCCCCCCCCEE--EEEEEEEEEECCCEEEEEEECCCCH-------HHHCCC--
T ss_conf 55378999957876553677877433546756666246--8877500235681788765326114-------565001--
Q ss_pred HHHHHHHHCCEEECCCCCCHHH-------HHHH-----CCCCCCCCCCCCCCCCCCCH-------------HHHHHHHHH
Q ss_conf 8998503011020135898566-------3431-----28985322223334465420-------------000013333
Q gi|254780809|r 292 TFLEVENADLILLLKEINSKKE-------ISFP-----KNIDFIFIGTKSDLYSTYTE-------------EYDHLISSF 346 (440)
Q Consensus 292 a~~~i~~aDlil~v~D~~~~~~-------~~~~-----~~~~~i~V~NK~Dl~~~~~~-------------~~~~~ISak 346 (440)
+-..-..|--.|+|.|.+.... +..+ .+..+++|.||+||.....- -....+||.
T Consensus 80 tSaYYrgAvGAllVYDITr~~Tfenv~rWL~ELRdhad~nIvimLvGNK~DL~~lraV~te~~k~~Ae~~~l~f~EtSAl 159 (222)
T KOG0087 80 TSAYYRGAVGALLVYDITRRQTFENVERWLKELRDHADSNIVIMLVGNKSDLNHLRAVPTEDGKAFAEKEGLFFLETSAL 159 (222)
T ss_pred CCHHHCCCCEEEEEEECHHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCHHHHHCCCCCHHHHHHHHHHCCCEEEEECCC
T ss_conf 11221344036999950467788889999999985588771799961220454334644566566897528547870034
Q ss_pred HHHHHHHHHHHHHH
Q ss_conf 23235899999999
Q gi|254780809|r 347 TGEGLEELINKIKS 360 (440)
Q Consensus 347 tg~Gi~~L~~~I~~ 360 (440)
.+.+++..-+.+.+
T Consensus 160 ~~tNVe~aF~~~l~ 173 (222)
T KOG0087 160 DATNVEKAFERVLT 173 (222)
T ss_pred CCCCHHHHHHHHHH
T ss_conf 44328899999999
No 275
>PRK12289 ribosome-associated GTPase; Reviewed
Probab=98.23 E-value=1.8e-06 Score=64.75 Aligned_cols=77 Identities=35% Similarity=0.401 Sum_probs=46.5
Q ss_pred HHHCCCEEEECCCCCCHHHHHHHHHCCH---HCCCCCCC----CCCEEECCCCCCCCCEEEEEEECCHHCCCCHHHHHHH
Q ss_conf 3202302431146631888999985520---00234546----8721100012456835899950810002410356666
Q gi|254780809|r 216 IRNGYKIVILGHSNAGKSSLFNALAKKD---VAIVTDIP----GTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEG 288 (440)
Q Consensus 216 l~~g~~v~i~G~pN~GKSSL~N~L~~~~---~aIVs~~~----GTTRD~i~~~~~i~g~~~~l~DTaGir~t~d~IE~~G 288 (440)
++.+. .+++|+.-||||||+|+|.... ..-||..- .|||-.-=-.+.-+| .++||||+|+-.=.++...
T Consensus 169 L~~k~-tv~~G~SGVGKSSLIN~L~p~~~l~TgeVS~k~~rGrHTTr~~eL~~L~~Gg---~iiDTPGf~~~~l~~~~~e 244 (351)
T PRK12289 169 LRNKI-TVVAGPSGVGKSSLINRLIPDVELRVGEVSGKLQRGRHTTRHVELFELPNGG---LLADTPGFNQPDLDCSPEE 244 (351)
T ss_pred HCCCE-EEEECCCCCCHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCCEEEEEECCCCC---EEEECCCCCCCCCCCCHHH
T ss_conf 75986-9998179887889887637412345665406489987835516899948995---8997979887888779789
Q ss_pred HHHHHHHH
Q ss_conf 78889985
Q gi|254780809|r 289 IKRTFLEV 296 (440)
Q Consensus 289 I~ra~~~i 296 (440)
+....-.+
T Consensus 245 L~~~FpE~ 252 (351)
T PRK12289 245 LAHYFPEA 252 (351)
T ss_pred HHHHCHHH
T ss_conf 98846678
No 276
>pfam05049 IIGP Interferon-inducible GTPase (IIGP). Interferon-inducible GTPase (IIGP) is thought to play a role in in intracellular defence. IIGP is predominantly associated with the Golgi apparatus and also localizes to the endoplasmic reticulum and exerts a distinct role in IFN-induced intracellular membrane trafficking or processing.
Probab=98.23 E-value=1.1e-05 Score=59.29 Aligned_cols=107 Identities=25% Similarity=0.301 Sum_probs=63.5
Q ss_pred CCCEEEECCCCCCHHHHHHHHHCC-----HHCCCCCCCCCCEEECCCCCCCCCE-EEEEEECCHHCCCCHHHHHHHHHHH
Q ss_conf 230243114663188899998552-----0002345468721100012456835-8999508100024103566667888
Q gi|254780809|r 219 GYKIVILGHSNAGKSSLFNALAKK-----DVAIVTDIPGTTRDVLTIDLDLEGY-LVKISDTAGIRETDDIVEKEGIKRT 292 (440)
Q Consensus 219 g~~v~i~G~pN~GKSSL~N~L~~~-----~~aIVs~~~GTTRD~i~~~~~i~g~-~~~l~DTaGir~t~d~IE~~GI~ra 292 (440)
.++|++.|.+.+||||++|+|-|- ..|-|.-+ -||.+.-. +....+ .+.|.|-||+..+.=..+.- . .
T Consensus 35 ~lnIavtGesG~GkSsfINalRg~g~e~~~aA~tGvv-etT~~~~~--Y~hp~~pnV~lwDLPG~gt~~f~~~~Y-l--~ 108 (375)
T pfam05049 35 PLKIAVTGDSGNGKSSFINALRGIGHEEDGSAPTGVV-ETTMKRTP--YSHPHFPNVVLWDLPGLGATNFTVETY-L--E 108 (375)
T ss_pred CEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCE-EECCCCCC--CCCCCCCCEEEECCCCCCCCCCCHHHH-H--H
T ss_conf 2479985489986789999874789877776876876-63267556--789999980796289999899898999-9--8
Q ss_pred HHHHHHHCCEEECCCCC-CHHHHHH-----HCCCCCCCCCCCCCC
Q ss_conf 99850301102013589-8566343-----128985322223334
Q gi|254780809|r 293 FLEVENADLILLLKEIN-SKKEISF-----PKNIDFIFIGTKSDL 331 (440)
Q Consensus 293 ~~~i~~aDlil~v~D~~-~~~~~~~-----~~~~~~i~V~NK~Dl 331 (440)
.-...+.|+.+.+.... ..++... ..++++.+|.+|+|.
T Consensus 109 ~~~f~~yDfFiiiss~rf~~n~v~LAk~i~~mgK~fyfVrtKvD~ 153 (375)
T pfam05049 109 EMKFSEYDFFIIISSERFSLNDVKLAKAIQRMGKRFYFVRTKLDS 153 (375)
T ss_pred HCCCCCCCEEEEEECCCCCHHHHHHHHHHHHHCCCEEEEEEECCC
T ss_conf 748564778999967754320189999999838947999862367
No 277
>KOG0080 consensus
Probab=98.23 E-value=5.4e-06 Score=61.36 Aligned_cols=133 Identities=26% Similarity=0.266 Sum_probs=84.1
Q ss_pred CCCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCCE--EECCCCCCCCCE--EEEEEECCHHCCCCHHHHHHHHHHHHH
Q ss_conf 2302431146631888999985520002345468721--100012456835--899950810002410356666788899
Q gi|254780809|r 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR--DVLTIDLDLEGY--LVKISDTAGIRETDDIVEKEGIKRTFL 294 (440)
Q Consensus 219 g~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTTR--D~i~~~~~i~g~--~~~l~DTaGir~t~d~IE~~GI~ra~~ 294 (440)
-++|.|+|...||||||+-+..... +-+..-||- |.--..+.++|. ++.+.||||- |+.- ..+-.
T Consensus 11 t~KiLlIGeSGVGKSSLllrFv~~~---fd~~~~~tIGvDFkvk~m~vdg~~~KlaiWDTAGq-------ErFR-tLTpS 79 (209)
T KOG0080 11 TFKILLIGESGVGKSSLLLRFVSNT---FDDLHPTTIGVDFKVKVMQVDGKRLKLAIWDTAGQ-------ERFR-TLTPS 79 (209)
T ss_pred EEEEEEECCCCCCHHHHHHHHHHCC---CCCCCCCEEEEEEEEEEEEECCCEEEEEEEECCCH-------HHHH-CCCHH
T ss_conf 4799998168765789999987643---67667734434578899987582678998743452-------7661-16876
Q ss_pred HHHHHCCEEECCCCCCHHHHHHH-----------CCCC--CCCCCCCCCCCCCCCHHH-------------HHHHHHHHH
Q ss_conf 85030110201358985663431-----------2898--532222333446542000-------------001333323
Q gi|254780809|r 295 EVENADLILLLKEINSKKEISFP-----------KNID--FIFIGTKSDLYSTYTEEY-------------DHLISSFTG 348 (440)
Q Consensus 295 ~i~~aDlil~v~D~~~~~~~~~~-----------~~~~--~i~V~NK~Dl~~~~~~~~-------------~~~ISaktg 348 (440)
.-..|.-+++|.|.+..+.+..+ .+.+ .++|.||+|.-++..... .+..||||.
T Consensus 80 yyRgaqGiIlVYDVT~Rdtf~kLd~W~~Eld~Ystn~diikmlVgNKiDkes~R~V~reEG~kfAr~h~~LFiE~SAkt~ 159 (209)
T KOG0080 80 YYRGAQGIILVYDVTSRDTFVKLDIWLKELDLYSTNPDIIKMLVGNKIDKESERVVDREEGLKFARKHRCLFIECSAKTR 159 (209)
T ss_pred HHCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCCCHHCCCCCHHHHHHHHHHHCCEEEECCHHHH
T ss_conf 74557506999971223567759999998876448813767654254450120213488878999860827898254343
Q ss_pred HHHHHHHHHHHHHH
Q ss_conf 23589999999996
Q gi|254780809|r 349 EGLEELINKIKSIL 362 (440)
Q Consensus 349 ~Gi~~L~~~I~~~l 362 (440)
+|+..-.+.+..++
T Consensus 160 ~~V~~~FeelveKI 173 (209)
T KOG0080 160 ENVQCCFEELVEKI 173 (209)
T ss_pred CCHHHHHHHHHHHH
T ss_conf 01888999999998
No 278
>cd03114 ArgK-like The function of this protein family is unkown. The protein sequences are similar to the ArgK protein in E. coli. ArgK protein is a membrane ATPase which is required for transporting arginine, ornithine and lysine into the cells by the arginine and ornithine (AO system) and lysine, arginine and ornithine (LAO) transport systems.
Probab=98.22 E-value=1.9e-06 Score=64.58 Aligned_cols=98 Identities=30% Similarity=0.377 Sum_probs=63.3
Q ss_pred EEEECCCCCCHHHHHHHHHCC------HHCCCCCCCCCCE-------EECCCC---------------------------
Q ss_conf 243114663188899998552------0002345468721-------100012---------------------------
Q gi|254780809|r 222 IVILGHSNAGKSSLFNALAKK------DVAIVTDIPGTTR-------DVLTID--------------------------- 261 (440)
Q Consensus 222 v~i~G~pN~GKSSL~N~L~~~------~~aIVs~~~GTTR-------D~i~~~--------------------------- 261 (440)
|.|.|+|-||||||+++|..+ +.|+++-=|-+.+ |.++-.
T Consensus 2 iGitG~pGaGKStLi~~l~~~~~~~g~~VaVlavDPsS~~sgGalLGDRiRm~~~~~~~~vfiRs~atrg~~ggla~~~~ 81 (148)
T cd03114 2 IGITGVPGAGKSTLIDALITALRARGKRVAVLAIDPSSPFSGGAILGDRIRMERHASDPGVFIRSLATRGFLGGLSRATP 81 (148)
T ss_pred EEECCCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHCCCCCEEEEECCCCCCCCCHHHHHH
T ss_conf 76258997878999999999999789837999968887866862032354534415799836863466665420468899
Q ss_pred -----CCCCCEEEEEEECCHHCCCCHHHHHHHHHHHHHHHHHHCCEEECCCCCCHHHHHHHCC----CCCCCCCCCCC
Q ss_conf -----4568358999508100024103566667888998503011020135898566343128----98532222333
Q gi|254780809|r 262 -----LDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEISFPKN----IDFIFIGTKSD 330 (440)
Q Consensus 262 -----~~i~g~~~~l~DTaGir~t~d~IE~~GI~ra~~~i~~aDlil~v~D~~~~~~~~~~~~----~~~i~V~NK~D 330 (440)
+...|+.+.|+.|.|.-+++- ...+-+|..++|.++..-++++..+. ..-++|+||+|
T Consensus 82 ~~i~~l~~~g~D~IiIETvGvGQse~-----------~i~~~aD~~i~v~~p~~GD~iQ~~K~gi~e~aDl~vvNK~D 148 (148)
T cd03114 82 EVIRVLDAAGFDVIIVETVGVGQSEV-----------DIASMADTTVVVMAPGAGDDIQAIKAGIMEIADIVVVNKAD 148 (148)
T ss_pred HHHHHHHHCCCCEEEEECCCCCCCHH-----------HHHHHCCEEEEEECCCCCCHHHHCCCCHHHCCCEEEEECCC
T ss_conf 99999997599989997487775602-----------65543566999963688737761122852124699993789
No 279
>COG2229 Predicted GTPase [General function prediction only]
Probab=98.21 E-value=6.6e-06 Score=60.77 Aligned_cols=135 Identities=22% Similarity=0.251 Sum_probs=86.3
Q ss_pred HCCCEEEECCCCCCHHHHHHHHHCCHHCCC-----CCCC-C---CCEEECCCCCCCCC-EEEEEEECCHHCCCCHHHHHH
Q ss_conf 023024311466318889999855200023-----4546-8---72110001245683-589995081000241035666
Q gi|254780809|r 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIV-----TDIP-G---TTRDVLTIDLDLEG-YLVKISDTAGIRETDDIVEKE 287 (440)
Q Consensus 218 ~g~~v~i~G~pN~GKSSL~N~L~~~~~aIV-----s~~~-G---TTRD~i~~~~~i~g-~~~~l~DTaGir~t~d~IE~~ 287 (440)
.+.+|+++|+-++||+|++-+++.+.--+| +..+ | ||--.=-+.+.+.+ ..+.|+||||-..-+
T Consensus 9 ~~~KIvv~G~~~agKtTfv~~~s~k~~v~t~~~~~~~s~k~kr~tTva~D~g~~~~~~~~~v~LfgtPGq~RF~------ 82 (187)
T COG2229 9 IETKIVVIGPVGAGKTTFVRALSDKPLVITEADASSVSGKGKRPTTVAMDFGSIELDEDTGVHLFGTPGQERFK------ 82 (187)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHCCCCCEEECCCCCCCCCCCCCEEEEECCCCEEECCCCEEEEECCCCCHHHH------
T ss_conf 01069998443664066788765345620103355554466455068632411377586168996589707789------
Q ss_pred HHHHHH-HHHHHHCCEEECCCCCCHHHH------H--HHCC-CCCCCCCCCCCCCCCCCHHH-------------HHHHH
Q ss_conf 678889-985030110201358985663------4--3128-98532222333446542000-------------00133
Q gi|254780809|r 288 GIKRTF-LEVENADLILLLKEINSKKEI------S--FPKN-IDFIFIGTKSDLYSTYTEEY-------------DHLIS 344 (440)
Q Consensus 288 GI~ra~-~~i~~aDlil~v~D~~~~~~~------~--~~~~-~~~i~V~NK~Dl~~~~~~~~-------------~~~IS 344 (440)
.-+ -..+.++-.++++|.+.+... . ...+ .|+++..||.||...+..+. .+.++
T Consensus 83 ---fm~~~l~~ga~gaivlVDss~~~~~~a~~ii~f~~~~~~ip~vVa~NK~DL~~a~ppe~i~e~l~~~~~~~~vi~~~ 159 (187)
T COG2229 83 ---FMWEILSRGAVGAIVLVDSSRPITFHAEEIIDFLTSRNPIPVVVAINKQDLFDALPPEKIREALKLELLSVPVIEID 159 (187)
T ss_pred ---HHHHHHHCCCCEEEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCHHHHHHHHHHCCCCCCEEEEE
T ss_conf ---89998748764289999569996467899999885206887899950422577899899999997112798644344
Q ss_pred HHHHHHHHHHHHHHHHH
Q ss_conf 33232358999999999
Q gi|254780809|r 345 SFTGEGLEELINKIKSI 361 (440)
Q Consensus 345 aktg~Gi~~L~~~I~~~ 361 (440)
|..++|..+.++.+...
T Consensus 160 a~e~~~~~~~L~~ll~~ 176 (187)
T COG2229 160 ATEGEGARDQLDVLLLK 176 (187)
T ss_pred CCCCHHHHHHHHHHHHH
T ss_conf 24634178999998730
No 280
>PRK12740 elongation factor G; Reviewed
Probab=98.19 E-value=9.7e-06 Score=59.62 Aligned_cols=15 Identities=27% Similarity=0.434 Sum_probs=9.4
Q ss_pred CCCCCHHHHHHHHHC
Q ss_conf 466318889999855
Q gi|254780809|r 227 HSNAGKSSLFNALAK 241 (440)
Q Consensus 227 ~pN~GKSSL~N~L~~ 241 (440)
..|.|=..|++.+..
T Consensus 246 ~~~~Gv~~LLd~I~~ 260 (670)
T PRK12740 246 LKNKGVQRLLDAVVD 260 (670)
T ss_pred CCCCCHHHHHHHHHH
T ss_conf 357788999999998
No 281
>KOG0079 consensus
Probab=98.19 E-value=9.7e-06 Score=59.61 Aligned_cols=138 Identities=20% Similarity=0.228 Sum_probs=88.4
Q ss_pred CCCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCCEEECCCCCCCCCE--EEEEEECCHHCCCCHHHHHHHHHHHHHHH
Q ss_conf 2302431146631888999985520002345468721100012456835--89995081000241035666678889985
Q gi|254780809|r 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY--LVKISDTAGIRETDDIVEKEGIKRTFLEV 296 (440)
Q Consensus 219 g~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTTRD~i~~~~~i~g~--~~~l~DTaGir~t~d~IE~~GI~ra~~~i 296 (440)
-++..|+|-|-||||||+-+.....-+ -|-+--+--|..-..+.++|- ...+.||||- |+.. ..+-..-
T Consensus 8 LfkllIigDsgVGKssLl~rF~ddtFs-~sYitTiGvDfkirTv~i~G~~VkLqIwDtAGq-------ErFr-titstyy 78 (198)
T KOG0079 8 LFKLLIIGDSGVGKSSLLLRFADDTFS-GSYITTIGVDFKIRTVDINGDRVKLQIWDTAGQ-------ERFR-TITSTYY 78 (198)
T ss_pred HHHHHEECCCCCCHHHHHHHHHHCCCC-CCEEEEEEEEEEEEEEECCCCEEEEEEEECCCH-------HHHH-HHHHHHC
T ss_conf 988883268764578999998525556-514887533579998604886899998614057-------9999-9988770
Q ss_pred HHHCCEEECCCCCCHH-------HHHHHC----CCCCCCCCCCCCCCCCCCHH-------------HHHHHHHHHHHHHH
Q ss_conf 0301102013589856-------634312----89853222233344654200-------------00013333232358
Q gi|254780809|r 297 ENADLILLLKEINSKK-------EISFPK----NIDFIFIGTKSDLYSTYTEE-------------YDHLISSFTGEGLE 352 (440)
Q Consensus 297 ~~aDlil~v~D~~~~~-------~~~~~~----~~~~i~V~NK~Dl~~~~~~~-------------~~~~ISaktg~Gi~ 352 (440)
.....+++|.|.++.. |+...+ ..|-++|.||.|+....... .-+..|||.+++++
T Consensus 79 rgthgv~vVYDVTn~ESF~Nv~rWLeei~~ncdsv~~vLVGNK~d~~~RrvV~t~dAr~~A~~mgie~FETSaKe~~NvE 158 (198)
T KOG0079 79 RGTHGVIVVYDVTNGESFNNVKRWLEEIRNNCDSVPKVLVGNKNDDPERRVVDTEDARAFALQMGIELFETSAKENENVE 158 (198)
T ss_pred CCCCEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCEECCCCCCCCCCEEEEHHHHHHHHHHCCCHHEEHHHHHCCCCH
T ss_conf 38866999997766365675999999998549643522104678875433430388999998669201000023302416
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 9999999996322
Q gi|254780809|r 353 ELINKIKSILSNK 365 (440)
Q Consensus 353 ~L~~~I~~~l~~~ 365 (440)
.....|.+.+...
T Consensus 159 ~mF~cit~qvl~~ 171 (198)
T KOG0079 159 AMFHCITKQVLQA 171 (198)
T ss_pred HHHHHHHHHHHHH
T ss_conf 7899999999999
No 282
>KOG0076 consensus
Probab=98.18 E-value=8.5e-06 Score=59.99 Aligned_cols=139 Identities=20% Similarity=0.252 Sum_probs=94.9
Q ss_pred HHCCCEEEECCCCCCHHHHHHHHHCCHH-C----CCCCCCCCCEEECCCCCCCCCEEEEEEECCHHCCCCHHHHHHHHHH
Q ss_conf 2023024311466318889999855200-0----2345468721100012456835899950810002410356666788
Q gi|254780809|r 217 RNGYKIVILGHSNAGKSSLFNALAKKDV-A----IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKR 291 (440)
Q Consensus 217 ~~g~~v~i~G~pN~GKSSL~N~L~~~~~-a----IVs~~~GTTRD~i~~~~~i~g~~~~l~DTaGir~t~d~IE~~GI~r 291 (440)
++-+.|+|.|+-||||.|++-++-.... + =+|.+- +|-...-+++.+++.++.+.|--|-- +.+-
T Consensus 15 Ke~y~vlIlgldnAGKttfLe~~Kt~~~~~~~~l~~~ki~-~tvgLnig~i~v~~~~l~fwdlgGQe---------~lrS 84 (197)
T KOG0076 15 KEDYSVLILGLDNAGKTTFLEALKTDFSKAYGGLNPSKIT-PTVGLNIGTIEVCNAPLSFWDLGGQE---------SLRS 84 (197)
T ss_pred HHHHHHEEECCCCCCCHHHHHHHHHHHHHHHCCCCHHHEE-CCCCEEECCEEECCCEEEEEECCCHH---------HHHH
T ss_conf 3203100242445785208988777887651688888810-12240313164125416778867808---------7899
Q ss_pred H-HHHHHHHCCEEECCCCCCHHHH-------------HHHCCCCCCCCCCCCCCCCCCCH-----------------HHH
Q ss_conf 8-9985030110201358985663-------------43128985322223334465420-----------------000
Q gi|254780809|r 292 T-FLEVENADLILLLKEINSKKEI-------------SFPKNIDFIFIGTKSDLYSTYTE-----------------EYD 340 (440)
Q Consensus 292 a-~~~i~~aDlil~v~D~~~~~~~-------------~~~~~~~~i~V~NK~Dl~~~~~~-----------------~~~ 340 (440)
- .+.-..|+.++|++|++++.-+ +...+.|+++..||.|+.+.... ...
T Consensus 85 lw~~yY~~~H~ii~viDa~~~eR~~~~~t~~~~v~~~E~leg~p~L~lankqd~q~~~~~~El~~~~~~~e~~~~rd~~~ 164 (197)
T KOG0076 85 LWKKYYWLAHGIIYVIDATDRERFEESKTAFEKVVENEKLEGAPVLVLANKQDLQNAMEAAELDGVFGLAELIPRRDNPF 164 (197)
T ss_pred HHHHHHHHHCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_conf 99999997263477641777788888799999999878762871543400433030566898987742665368865764
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 0133332323589999999996322
Q gi|254780809|r 341 HLISSFTGEGLEELINKIKSILSNK 365 (440)
Q Consensus 341 ~~ISaktg~Gi~~L~~~I~~~l~~~ 365 (440)
..|||.+|+|+++=+.-+.+.+...
T Consensus 165 ~pvSal~gegv~egi~w~v~~~~kn 189 (197)
T KOG0076 165 QPVSALTGEGVKEGIEWLVKKLEKN 189 (197)
T ss_pred CCCHHHHCCCHHHHHHHHHHHHHHC
T ss_conf 4214540556778899999998623
No 283
>TIGR00491 aIF-2 translation initiation factor aIF-2; InterPro: IPR004544 Initiation factor 2 (IF-2) is one of the three factors required for the initiation of protein biosynthesis in bacteria. IF-2 promotes the GTP-dependent binding of the initiator tRNA to the small subunit of the ribosome. IF-2 is a protein of about 70 to 95 Kd which contains a central GTP-binding domain flanked by a highly variable N-terminal domain and a more conserved C-terminal domain. Some members of this family undergo protein self splicing that involves a post-translational excision of the intein followed by peptide ligation.; GO: 0003743 translation initiation factor activity, 0005525 GTP binding, 0006413 translational initiation, 0005622 intracellular.
Probab=98.17 E-value=1.6e-06 Score=64.96 Aligned_cols=234 Identities=23% Similarity=0.338 Sum_probs=126.6
Q ss_pred EEEEEEECCCCCCCCCCEEEEEECCCHHHHHHHHHHHHHHH---HHHHCC---CHHHHHHHH------HHCCCCHHHHHH
Q ss_conf 69999956779988775399980898788999999875443---200000---036899787------521567777778
Q gi|254780809|r 63 KGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILEELAKMP---NLRLAN---PGEFSRRAF------ENGKIDLLEAES 130 (440)
Q Consensus 63 ~~l~~~f~~P~SyTGEDvvEi~~HG~~~i~~~il~~l~~~~---g~r~A~---pGEFT~RAf------lNgKidL~qaEa 130 (440)
++-+.||..- |+--|| -+.-++++.|+.|--.+ ..+.-+ .-=--.+|| -|||+.=..-||
T Consensus 432 evnvsyyaky-----enGkei---PsyeivkkflnslkPknldkkikvleGkerdvnylkafesdGlienGrltklGrea 503 (1145)
T TIGR00491 432 EVNVSYYAKY-----ENGKEI---PSYEIVKKFLNSLKPKNLDKKIKVLEGKERDVNYLKAFESDGLIENGRLTKLGREA 503 (1145)
T ss_pred CEEEEEEEEE-----CCCCCC---CHHHHHHHHHHHCCCCCCCCEEEEECCCCHHHHHHHHHCCCCCEECCCHHHHHHHH
T ss_conf 0345555430-----478637---50899999985227522124034432762012454432137721155201332678
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Q ss_conf 89885003688999887531431024566567769988865444311354431123325888864010001121233322
Q gi|254780809|r 131 LADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQG 210 (440)
Q Consensus 131 i~~LI~A~t~~~~~~a~~~l~G~ls~~i~~lr~~L~~~~a~iEa~IDF~dEedi~~~~~~~~~~~i~~i~~~l~~ll~~~ 210 (440)
++= +++. .+.+.--...+.|++-.|++| =||++-.+.+.... ++..+-.
T Consensus 504 lni-------------Wknh--efGkenidymkslieniafve-------vedveiidydGyvy---dltteth------ 552 (1145)
T TIGR00491 504 LNI-------------WKNH--EFGKENIDYMKSLIENIAFVE-------VEDVEIIDYDGYVY---DLTTETH------ 552 (1145)
T ss_pred HHH-------------HHCC--CCCCHHHHHHHHHHHHHEEEE-------EEEEEEEECCCEEE---EECCCHH------
T ss_conf 876-------------5201--346125789998874100356-------52057873276267---4010001------
Q ss_pred HHHHHHHHCCCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCC----------EEECCC-----------CCCCCCEEE
Q ss_conf 34554320230243114663188899998552000234546872----------110001-----------245683589
Q gi|254780809|r 211 KLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT----------RDVLTI-----------DLDLEGYLV 269 (440)
Q Consensus 211 ~~~~~l~~g~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTT----------RD~i~~-----------~~~i~g~~~ 269 (440)
..+.+|+. |--+||+-++=|. +.|+-.||-= -|+|+. .+.|-| .
T Consensus 553 ---nfianGiv--------vhnTTLLDkIRks--~Vv~kEAGgiTQhiGAsevP~dVI~~ic~Dl~K~f~i~~~iPG--L 617 (1145)
T TIGR00491 553 ---NFIANGIV--------VHNTTLLDKIRKS--AVVKKEAGGITQHIGASEVPLDVIKKICGDLLKKFKIKLKIPG--L 617 (1145)
T ss_pred ---HHHHCCEE--------EECCCCCCCCCCC--CEEEECCCCCCEECCCEECCHHHHHHHCHHHHHCEEEEEECCE--E
T ss_conf ---23226647--------8514331000334--0132477884010066654668986513212114025786580--1
Q ss_pred EEEECCH------HCCCCHHHHHHHHHHHHHHHHHHCCEEECCCCCC---HHH---HHH--HCCCCCCCCCCCCCCCCCC
Q ss_conf 9950810------0024103566667888998503011020135898---566---343--1289853222233344654
Q gi|254780809|r 270 KISDTAG------IRETDDIVEKEGIKRTFLEVENADLILLLKEINS---KKE---ISF--PKNIDFIFIGTKSDLYSTY 335 (440)
Q Consensus 270 ~l~DTaG------ir~t~d~IE~~GI~ra~~~i~~aDlil~v~D~~~---~~~---~~~--~~~~~~i~V~NK~Dl~~~~ 335 (440)
.|+|||| +|.=.. .=||+-++|+|... ++. +.. .-..|+++..||+|+.+.|
T Consensus 618 LfIDTPGHeaFt~LRkRGG--------------AlADlAILvVDInEGfkpQT~EA~~ILr~~ktPFvVAANKIDrI~GW 683 (1145)
T TIGR00491 618 LFIDTPGHEAFTNLRKRGG--------------ALADLAILVVDINEGFKPQTEEALNILRSFKTPFVVAANKIDRIPGW 683 (1145)
T ss_pred EEEECCCCHHHHCCCCCCC--------------HHHHHHEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEECCCCCCCCC
T ss_conf 5860786234422010010--------------36301101341026984034899999612898728950330558896
Q ss_pred CHHH-----------------------------------------------------HHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 2000-----------------------------------------------------00133332323589999999996
Q gi|254780809|r 336 TEEY-----------------------------------------------------DHLISSFTGEGLEELINKIKSIL 362 (440)
Q Consensus 336 ~~~~-----------------------------------------------------~~~ISaktg~Gi~~L~~~I~~~l 362 (440)
.... .+.|||+||+||.+|+-.+..+.
T Consensus 684 ~~~e~~~fl~~~~kq~~~~~~~l~~~~y~lv~~kPL~e~GF~AerFdRv~Dft~tVaviPvSA~tGEGIpelL~~l~GLA 763 (1145)
T TIGR00491 684 KSHEGRPFLESYEKQEQRVKQNLDKKVYNLVIKKPLAEEGFEAERFDRVRDFTRTVAVIPVSAVTGEGIPELLLILAGLA 763 (1145)
T ss_pred CCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHHCCCHHHCCCCCCCCCCEECEEEEEEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 45488516666541116788668877898873022112588712255200001136898866567897489999998888
Q ss_pred HH
Q ss_conf 32
Q gi|254780809|r 363 SN 364 (440)
Q Consensus 363 ~~ 364 (440)
+.
T Consensus 764 Q~ 765 (1145)
T TIGR00491 764 QK 765 (1145)
T ss_pred HH
T ss_conf 89
No 284
>TIGR03348 VI_IcmF type VI secretion protein IcmF. Members of this protein family are IcmF homologs and tend to be associated with type VI secretion systems.
Probab=98.12 E-value=7.9e-05 Score=53.28 Aligned_cols=118 Identities=18% Similarity=0.215 Sum_probs=64.9
Q ss_pred HHHHHHCCCEEEECCCCCCHHHHHHHH------HCC-HHCCCCCCCCCCEEECCCCCCC-CCEEEEEEECCHHCCCCH--
Q ss_conf 554320230243114663188899998------552-0002345468721100012456-835899950810002410--
Q gi|254780809|r 213 GEIIRNGYKIVILGHSNAGKSSLFNAL------AKK-DVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRETDD-- 282 (440)
Q Consensus 213 ~~~l~~g~~v~i~G~pN~GKSSL~N~L------~~~-~~aIVs~~~GTTRD~i~~~~~i-~g~~~~l~DTaGir~t~d-- 282 (440)
.+.+.+-+=.+++|+|++||||+++.= ... ...-+..+.| || +++| -...-.|+||||=--++|
T Consensus 105 ~~~ly~LPWYlviG~~gsGKTt~l~~Sgl~fPl~~~~~~~~~~g~gg-t~-----~cdwwft~~AVliDtaGry~~Q~~~ 178 (1169)
T TIGR03348 105 RRYLYDLPWYLVIGPPGSGKTTLLQNSGLKFPLAERLGAAALRGVGG-TR-----NCDWWFTDEAVLIDTAGRYTTQDSD 178 (1169)
T ss_pred CCHHHHCCEEEEECCCCCCHHHHHHHCCCCCCCCCCCCHHHCCCCCC-CC-----CCCEEEECCEEEEECCCCEECCCCC
T ss_conf 32264389589978999866899983799887741001122158899-85-----5571652787999479760268886
Q ss_pred -HHHHHHHHHHHHHHHHH------CCEEECCCCCC-----HHHHH----------------HHCCCCCCCCCCCCCCCCC
Q ss_conf -35666678889985030------11020135898-----56634----------------3128985322223334465
Q gi|254780809|r 283 -IVEKEGIKRTFLEVENA------DLILLLKEINS-----KKEIS----------------FPKNIDFIFIGTKSDLYST 334 (440)
Q Consensus 283 -~IE~~GI~ra~~~i~~a------Dlil~v~D~~~-----~~~~~----------------~~~~~~~i~V~NK~Dl~~~ 334 (440)
+.++..=..-+..+++- +-|++.+|..+ +.... +--..|+.+|++|+||...
T Consensus 179 ~~~d~~~W~~fL~lLkk~R~r~piNGvil~is~~~Ll~~~~~~~~~~a~~lr~Rl~El~~~lg~~~PVYv~~TK~Dll~G 258 (1169)
T TIGR03348 179 PEEDAAAWLGFLGLLRKHRRRQPLNGVVVTVSLADLLTADPAERKAHARAIRQRLQELREQLGARFPVYLVLTKADLLAG 258 (1169)
T ss_pred CHHHHHHHHHHHHHHHHCCCCCCCCEEEEEEEHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEECHHHHHC
T ss_conf 40018999999999986489899876899978999747899999999999999999999982998775998664012306
Q ss_pred CC
Q ss_conf 42
Q gi|254780809|r 335 YT 336 (440)
Q Consensus 335 ~~ 336 (440)
..
T Consensus 259 F~ 260 (1169)
T TIGR03348 259 FE 260 (1169)
T ss_pred HH
T ss_conf 99
No 285
>COG5019 CDC3 Septin family protein [Cell division and chromosome partitioning / Cytoskeleton]
Probab=98.09 E-value=9.1e-06 Score=59.79 Aligned_cols=121 Identities=22% Similarity=0.384 Sum_probs=72.8
Q ss_pred HHHHHHHHCC--CEEEECCCCCCHHHHHHHHHCCHHCCCCC-----C-CC---CCEEECCCCCCC--CCE--EEEEEECC
Q ss_conf 3455432023--02431146631888999985520002345-----4-68---721100012456--835--89995081
Q gi|254780809|r 211 KLGEIIRNGY--KIVILGHSNAGKSSLFNALAKKDVAIVTD-----I-PG---TTRDVLTIDLDL--EGY--LVKISDTA 275 (440)
Q Consensus 211 ~~~~~l~~g~--~v~i~G~pN~GKSSL~N~L~~~~~aIVs~-----~-~G---TTRD~i~~~~~i--~g~--~~~l~DTa 275 (440)
+..+..+.|+ +|.++|+.+.||||++|.|++. +++.+ . |. .|-.+......+ +|+ .+.++|||
T Consensus 13 r~~~~~k~Gi~f~im~~G~sG~GKttfiNtL~~~--~l~~~~~~~~~~~~~~~~~~~i~~~~~~l~e~~~~~~l~vIDtp 90 (373)
T COG5019 13 RHRKLSKKGIDFTIMVVGESGLGKTTFINTLFGT--SLVDETEIDDIRAEGTSPTLEIKITKAELEEDGFHLNLTVIDTP 90 (373)
T ss_pred HHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHH--HCCCCCCCCCCCCCCCCCCEEEEEEEEEEECCCEEEEEEEECCC
T ss_conf 8899985599638999627887555788765676--52577775576666677625888643166048748988886158
Q ss_pred HHCCCCH------H----H---------HHHHHHHH-HHHHHHHCCEEECCCCCC----HHHHHHH----CCCCCCCCCC
Q ss_conf 0002410------3----5---------66667888-998503011020135898----5663431----2898532222
Q gi|254780809|r 276 GIRETDD------I----V---------EKEGIKRT-FLEVENADLILLLKEINS----KKEISFP----KNIDFIFIGT 327 (440)
Q Consensus 276 Gir~t~d------~----I---------E~~GI~ra-~~~i~~aDlil~v~D~~~----~~~~~~~----~~~~~i~V~N 327 (440)
|+.+.-| + | |...+.|. ...-...++.||.+.++. +.++..+ +..++|.|+.
T Consensus 91 GfGD~idNs~~we~I~~yI~~q~d~yl~~E~~~~R~~~~~D~RVH~cLYFI~Ptgh~l~~~DIe~Mk~ls~~vNlIPVI~ 170 (373)
T COG5019 91 GFGDFIDNSKCWEPIVDYIDDQFDQYLDEEQKIKRNPKFKDTRVHACLYFIRPTGHGLKPLDIEAMKRLSKRVNLIPVIA 170 (373)
T ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHCCCCEEEEEE
T ss_conf 86565464101799999999999999998643455665446824899998468988787888999999853367565662
Q ss_pred CCCCCC
Q ss_conf 333446
Q gi|254780809|r 328 KSDLYS 333 (440)
Q Consensus 328 K~Dl~~ 333 (440)
|+|...
T Consensus 171 KaD~lT 176 (373)
T COG5019 171 KADTLT 176 (373)
T ss_pred CCCCCC
T ss_conf 466589
No 286
>KOG3883 consensus
Probab=98.07 E-value=2.8e-05 Score=56.41 Aligned_cols=143 Identities=17% Similarity=0.229 Sum_probs=90.5
Q ss_pred HHHHCCCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCCEEECCCCCCC-CCE--EEEEEECCHHCCCCHHHHHHHHHH
Q ss_conf 43202302431146631888999985520002345468721100012456-835--899950810002410356666788
Q gi|254780809|r 215 IIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGY--LVKISDTAGIRETDDIVEKEGIKR 291 (440)
Q Consensus 215 ~l~~g~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTTRD~i~~~~~i-~g~--~~~l~DTaGir~t~d~IE~~GI~r 291 (440)
+.-.+.+|+.+|.-.|||.+++-.|+--+.-+=++..-|--|+-.+.++- .|. .++|+||||+++. .+ +.
T Consensus 5 kmGk~~kVvVcG~k~VGKTaileQl~yg~~~~~~e~~pTiEDiY~~svet~rgarE~l~lyDTaGlq~~--~~-----eL 77 (198)
T KOG3883 5 KMGKVCKVVVCGMKSVGKTAILEQLLYGNHVPGTELHPTIEDIYVASVETDRGAREQLRLYDTAGLQGG--QQ-----EL 77 (198)
T ss_pred HHCCCEEEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCHHHHEEEEEECCCCHHHEEEEEECCCCCCC--HH-----HH
T ss_conf 117640799977745228999999985167889766663442246764068781016888652445576--00-----20
Q ss_pred HHHHHHHHCCEEECCCCCCHHHHH----------H---HCCCCCCCCCCCCCCCCCCCHHHH-------------HHHHH
Q ss_conf 899850301102013589856634----------3---128985322223334465420000-------------01333
Q gi|254780809|r 292 TFLEVENADLILLLKEINSKKEIS----------F---PKNIDFIFIGTKSDLYSTYTEEYD-------------HLISS 345 (440)
Q Consensus 292 a~~~i~~aDlil~v~D~~~~~~~~----------~---~~~~~~i~V~NK~Dl~~~~~~~~~-------------~~ISa 345 (440)
-+....-+|-.++|.+..++..++ . .+..|+++..||.|+.++...+.+ ..++|
T Consensus 78 prhy~q~aDafVLVYs~~d~eSf~rv~llKk~Idk~KdKKEvpiVVLaN~rdr~~p~~vd~d~A~~Wa~rEkvkl~eVta 157 (198)
T KOG3883 78 PRHYFQFADAFVLVYSPMDPESFQRVELLKKEIDKHKDKKEVPIVVLANKRDRAEPREVDMDVAQIWAKREKVKLWEVTA 157 (198)
T ss_pred HHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCCEEEEECHHHCCCCHHCCHHHHHHHHHHHHEEEEEEEE
T ss_conf 27671057657999637998898899999999862556551228997300101364012788998887653024789871
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q ss_conf 3232358999999999632
Q gi|254780809|r 346 FTGEGLEELINKIKSILSN 364 (440)
Q Consensus 346 ktg~Gi~~L~~~I~~~l~~ 364 (440)
.....+-+-...+...+..
T Consensus 158 ~dR~sL~epf~~l~~rl~~ 176 (198)
T KOG3883 158 MDRPSLYEPFTYLASRLHQ 176 (198)
T ss_pred CCCHHHHHHHHHHHHHCCC
T ss_conf 3442245389999875058
No 287
>TIGR00993 3a0901s04IAP86 chloroplast protein import component Toc86/159, G and M domains; InterPro: IPR005690 Two integral outer envelope GTPases, Toc34 and Toc86, are proposed to regulate the recognition and translocation of nuclear-encoded preproteins during the early stages of protein import into chloroplasts. The long precursor of the 86K protein is proposed to have three domains. The N-terminal A-domain is acidic, repetitive, weakly conserved, readily removed by proteolysis during chloroplast isolation, and not required for protein translocation . The other domains are designated G (GTPase) and M (membrane anchor); this family includes most of the G domain and all of M.; GO: 0015450 P-P-bond-hydrolysis-driven protein transmembrane transporter activity, 0006886 intracellular protein transport, 0009707 chloroplast outer membrane.
Probab=98.06 E-value=5.8e-06 Score=61.13 Aligned_cols=114 Identities=21% Similarity=0.364 Sum_probs=73.2
Q ss_pred CCCEEEECCCCCCHHHHHHHHHCCHHCCCCCC-CCCCEEECCCCCCCCCEEEEEEECCHHCCCC-HHHHHHH-HHHHHHH
Q ss_conf 23024311466318889999855200023454-6872110001245683589995081000241-0356666-7888998
Q gi|254780809|r 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDI-PGTTRDVLTIDLDLEGYLVKISDTAGIRETD-DIVEKEG-IKRTFLE 295 (440)
Q Consensus 219 g~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~-~GTTRD~i~~~~~i~g~~~~l~DTaGir~t~-d~IE~~G-I~ra~~~ 295 (440)
...|.+.|+.-||||.-+|.++++.++-++-+ +|||| +-+..=.++|+.|+++||||+..+. |.-...= ..-.++.
T Consensus 124 Sl~IlVLGK~GVGKSATINSI~~e~~~s~dAf~~~T~~-V~~i~G~V~Gv~i~viDTPGL~~s~~dQs~N~K~L~sVK~~ 202 (772)
T TIGR00993 124 SLNILVLGKSGVGKSATINSIFGEVKASIDAFGLGTTS-VQEIEGLVDGVKIRVIDTPGLKSSASDQSKNEKILSSVKKL 202 (772)
T ss_pred EEEEEEECCCCCCCCHHHHHHHCCEEEEEECCCCCCCE-EEEEEEEEEEEEEEEEECCCCCHHHHHHHHCHHHHHHHHHH
T ss_conf 11434551568772010111123500120101466644-77666677107999975788755554333020688888886
Q ss_pred HHHH--CCEEEC--CCCCCH--HHHHHHCC----------CCCCCCCCCCCCCC
Q ss_conf 5030--110201--358985--66343128----------98532222333446
Q gi|254780809|r 296 VENA--DLILLL--KEINSK--KEISFPKN----------IDFIFIGTKSDLYS 333 (440)
Q Consensus 296 i~~a--Dlil~v--~D~~~~--~~~~~~~~----------~~~i~V~NK~Dl~~ 333 (440)
++++ |+|||| +|.... .++.++.. .+.|+-++.+--.+
T Consensus 203 ~KK~PPDIVLY~DRLD~Q~RD~~dlPlLRti~~~lGpsIW~N~IV~LTHAAS~P 256 (772)
T TIGR00993 203 IKKNPPDIVLYVDRLDLQTRDLNDLPLLRTITDVLGPSIWKNAIVTLTHAASAP 256 (772)
T ss_pred HCCCCCCEEEEECCCCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHHHCCCCC
T ss_conf 317969669860022333465667744757775616101320432111003687
No 288
>TIGR02034 CysN sulfate adenylyltransferase, large subunit; InterPro: IPR011779 Metabolic assimilation of sulphur from inorganic sulphate, requires sulphate activation by coupling to a nucleoside, for the production of high-energy nucleoside phosphosulphates. This pathway appears to be similar in all prokaryotic organisms. Activation is first achieved through sulphation of sulphate with ATP by sulphate adenylyltransferase (ATP sulphurylase) to produce 5'-phosphosulphate (APS), coupled by GTP hydrolysis. Subsequently, APS is phosphorylated by an APS kinase to produce 3'-phosphoadenosine-5'-phosphosulphate (PAPS) . In Escherichia coli, ATP sulphurylase is a heterodimer composed of two subunits encoded by cysD and cysN, with APS kinase encoded by cysC. These genes are located in a unidirectionally transcribed gene cluster, and have been shown to be required for the synthesis of sulphur-containing amino acids . Homologous to this E. coli activation pathway are nodPQH gene products found among members of the Rhizobiaceae family. These gene products have been shown to exhibit ATP sulphurase and APS kinase activity, yet are involved in Nod factor sulphation, and sulphation of other macromolecules . With members of the Rhizobiaceae family, nodQ often appears as a fusion of cysN (large subunit of ATP sulphurase) and cysC (APS kinase) , .; GO: 0016772 transferase activity transferring phosphorus-containing groups.
Probab=98.05 E-value=1.4e-06 Score=65.49 Aligned_cols=120 Identities=23% Similarity=0.255 Sum_probs=78.5
Q ss_pred EECCCCCCHHHHHHHHHCCHHCC----------CCCCCCCCE----------------------EECCCCCCCCCEEEEE
Q ss_conf 31146631888999985520002----------345468721----------------------1000124568358999
Q gi|254780809|r 224 ILGHSNAGKSSLFNALAKKDVAI----------VTDIPGTTR----------------------DVLTIDLDLEGYLVKI 271 (440)
Q Consensus 224 i~G~pN~GKSSL~N~L~~~~~aI----------Vs~~~GTTR----------------------D~i~~~~~i~g~~~~l 271 (440)
=+|-.-=|||||+=+||-.-+.| -|...||+= |+=.-++.-+..+|.+
T Consensus 5 TCGSVDDGKSTLIGRLLhDtK~i~eDQL~~l~~DS~~~G~~G~~iD~ALLVDGL~AEREQGITIDVAYRYFsT~KRkFIv 84 (411)
T TIGR02034 5 TCGSVDDGKSTLIGRLLHDTKQIYEDQLAALERDSKKHGTQGEEIDLALLVDGLQAEREQGITIDVAYRYFSTDKRKFIV 84 (411)
T ss_pred ECCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCCCCCEEE
T ss_conf 20544587310222225555216899999988522553478876523413306774432486121331325778761788
Q ss_pred EECCHHCC-CCHHHHHHHHHHHHHHHHHHCCEEECCCCCCHH--------HHHHHCCCC-CCCCCCCCCCCCCCCHHH--
Q ss_conf 50810002-410356666788899850301102013589856--------634312898-532222333446542000--
Q gi|254780809|r 272 SDTAGIRE-TDDIVEKEGIKRTFLEVENADLILLLKEINSKK--------EISFPKNID-FIFIGTKSDLYSTYTEEY-- 339 (440)
Q Consensus 272 ~DTaGir~-t~d~IE~~GI~ra~~~i~~aDlil~v~D~~~~~--------~~~~~~~~~-~i~V~NK~Dl~~~~~~~~-- 339 (440)
-||||=-+ |-|- ---+..||+.++|+|+..-- .+..+-+++ +++.+||+||......-+
T Consensus 85 ADTPGHEQYTRNM---------ATGAST~dlAvlLvDAR~Gvl~QTRRHs~i~sLLGIrh~VlAVNKmDLvdyd~~vF~~ 155 (411)
T TIGR02034 85 ADTPGHEQYTRNM---------ATGASTADLAVLLVDARKGVLEQTRRHSYIASLLGIRHVVLAVNKMDLVDYDEEVFEN 155 (411)
T ss_pred ECCCCCCCCCCCC---------CHHCCCCCEEEEEEEHHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCCHHHHHH
T ss_conf 4085594154430---------0001311246655421021345677999998860453899999701114765788999
Q ss_pred -------------------HHHHHHHHHHHHH
Q ss_conf -------------------0013333232358
Q gi|254780809|r 340 -------------------DHLISSFTGEGLE 352 (440)
Q Consensus 340 -------------------~~~ISaktg~Gi~ 352 (440)
.+.+||..|+|+-
T Consensus 156 I~~~y~~fa~~L~g~~~~~~iP~SAL~GdNv~ 187 (411)
T TIGR02034 156 IKKDYLAFAEQLAGVRDVTFIPLSALKGDNVV 187 (411)
T ss_pred HHHHHHHHHHHCCCCCEEEEEEEECCCCCCEE
T ss_conf 99999999986389834799873313687402
No 289
>pfam03029 ATP_bind_1 Conserved hypothetical ATP binding protein. Members of this family are found in a range of archaea and eukaryotes and have hypothesized ATP binding activity.
Probab=98.05 E-value=1e-05 Score=59.47 Aligned_cols=106 Identities=22% Similarity=0.280 Sum_probs=59.2
Q ss_pred EECCCCCCHHHHHHHHHC------CHHCCCCCCCCC----------CEEEC-----------------------------
Q ss_conf 311466318889999855------200023454687----------21100-----------------------------
Q gi|254780809|r 224 ILGHSNAGKSSLFNALAK------KDVAIVTDIPGT----------TRDVL----------------------------- 258 (440)
Q Consensus 224 i~G~pN~GKSSL~N~L~~------~~~aIVs~~~GT----------TRD~i----------------------------- 258 (440)
++|+|-+||||+.+.+.. ++.++|-==|+. .||.|
T Consensus 1 ViGpaGSGKTT~~~~l~~~l~~~~r~~~vvNLDPA~e~~pY~~~iDIrd~i~~~dvM~~~~LGPNGali~~me~l~~~~d 80 (234)
T pfam03029 1 VVGGAGSGKTTFVGALSEILPLRGRSVYVVNLDPAAENLPYEADIDIRELITVADVMEDYGLGPNGALTVAMDFGRITLD 80 (234)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCCCCCCCCCHHHHCCHHHHHHHCCCCCCHHHHHHHHHHHHHHH
T ss_conf 98989898899999999999977997599978986658999877717874679999998298973899999999999999
Q ss_pred --CCCCCCCCEEEEEEECCHHCC--CCHHHHHHHHHHHHHHHHHHCCEEECCCCC---CHHHH----------HHHCCCC
Q ss_conf --012456835899950810002--410356666788899850301102013589---85663----------4312898
Q gi|254780809|r 259 --TIDLDLEGYLVKISDTAGIRE--TDDIVEKEGIKRTFLEVENADLILLLKEIN---SKKEI----------SFPKNID 321 (440)
Q Consensus 259 --~~~~~i~g~~~~l~DTaGir~--t~d~IE~~GI~ra~~~i~~aDlil~v~D~~---~~~~~----------~~~~~~~ 321 (440)
...+... -.+.|+||||--| +....=...+++ ++ ...=++++++|+. ++... ...-..|
T Consensus 81 ~l~~~l~~~-~~y~l~DtPGQiElf~~~~~~~~i~~~-L~--~~~~~~v~l~D~~~~~d~~~fis~~L~a~s~m~~l~lP 156 (234)
T pfam03029 81 WLLEELEYE-DDYYLFDTPGQIELFTHWDSLARGVEA-LE--ASRLGAVYLVDTRRLTDPIDFFSGLLYALSIMLRLGLP 156 (234)
T ss_pred HHHHHHCCC-CCEEEEECCCCEEEEECCHHHHHHHHH-HH--CCCEEEEEEECHHHHCCHHHHHHHHHHHHHHHHHCCCC
T ss_conf 999985255-776998369835765400269999999-71--28738999842577468888999999999999974899
Q ss_pred CCCCCCCCCCCC
Q ss_conf 532222333446
Q gi|254780809|r 322 FIFIGTKSDLYS 333 (440)
Q Consensus 322 ~i~V~NK~Dl~~ 333 (440)
++.|+||+|+.+
T Consensus 157 ~vnvlsK~Dl~~ 168 (234)
T pfam03029 157 FVVALNKFDLLS 168 (234)
T ss_pred EEEEECCHHCCC
T ss_conf 443100041354
No 290
>cd01859 MJ1464 MJ1464. This family represents archaeal GTPase typified by the protein MJ1464 from Methanococcus jannaschii. The members of this family show a circular permutation of the GTPase signature motifs so that C-terminal strands 5, 6, and 7 (strands 6 contain the NKxD motif) are relocated to the N terminus.
Probab=98.04 E-value=4.7e-06 Score=61.82 Aligned_cols=75 Identities=13% Similarity=0.109 Sum_probs=55.3
Q ss_pred HHHHHHHHHCCEEECCCCCCHH-----HH---HHHCCCCCCCCCCCCCCCCCCCH-----------HHHHHHHHHHHHHH
Q ss_conf 8899850301102013589856-----63---43128985322223334465420-----------00001333323235
Q gi|254780809|r 291 RTFLEVENADLILLLKEINSKK-----EI---SFPKNIDFIFIGTKSDLYSTYTE-----------EYDHLISSFTGEGL 351 (440)
Q Consensus 291 ra~~~i~~aDlil~v~D~~~~~-----~~---~~~~~~~~i~V~NK~Dl~~~~~~-----------~~~~~ISaktg~Gi 351 (440)
...+.+++||+|++|+|+..+. .+ ....++|+++|+||+||.+.... ...+++||+.+.|+
T Consensus 5 ~i~~~i~~~D~il~VvDar~p~~~~~~~l~~~l~~~~K~~ilvlNK~Dl~~~~~~~~~~~~~~~~g~~~i~iSa~~~~g~ 84 (156)
T cd01859 5 LVRRIIKESDVVLEVLDARDPELTRSRKLERYVLELGKKLLIVLNKADLVPKEVLEKWKSIKESEGIPVVYVSAKERLGT 84 (156)
T ss_pred HHHHHHHHCCEEEEEEECCCCCCCCCHHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCEEEEECCCCCCH
T ss_conf 99999987999999998788999869899999975699399997755558989999999998289997378701267579
Q ss_pred HHHHHHHHHHHHHH
Q ss_conf 89999999996322
Q gi|254780809|r 352 EELINKIKSILSNK 365 (440)
Q Consensus 352 ~~L~~~I~~~l~~~ 365 (440)
+.|++.+.+.....
T Consensus 85 ~~L~~~i~~~~~~~ 98 (156)
T cd01859 85 KILRRTIKELAKID 98 (156)
T ss_pred HHHHHHHHHHHCCC
T ss_conf 99999999860235
No 291
>KOG0091 consensus
Probab=98.02 E-value=2.8e-05 Score=56.41 Aligned_cols=135 Identities=25% Similarity=0.352 Sum_probs=87.8
Q ss_pred CCCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCCEEECCCCCCC-CC--EEEEEEECCHHCCCCHHHHHHHHHHHHHH
Q ss_conf 2302431146631888999985520002345468721100012456-83--58999508100024103566667888998
Q gi|254780809|r 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EG--YLVKISDTAGIRETDDIVEKEGIKRTFLE 295 (440)
Q Consensus 219 g~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTTRD~i~~~~~i-~g--~~~~l~DTaGir~t~d~IE~~GI~ra~~~ 295 (440)
-++..++|-.-||||||+.+.+.-+-|-.|| |-.--|.-..-+++ .| ++..|.||||- |+. -.-++..
T Consensus 8 qfrlivigdstvgkssll~~ft~gkfaelsd-ptvgvdffarlie~~pg~riklqlwdtagq-------erf-rsitksy 78 (213)
T KOG0091 8 QFRLIVIGDSTVGKSSLLRYFTEGKFAELSD-PTVGVDFFARLIELRPGYRIKLQLWDTAGQ-------ERF-RSITKSY 78 (213)
T ss_pred EEEEEEECCCCCCHHHHHHHHHCCCCCCCCC-CCCCHHHHHHHHHCCCCCEEEEEEEECCCH-------HHH-HHHHHHH
T ss_conf 8999998377524888999983376655679-853367898987347886789987302056-------888-8878998
Q ss_pred HHHHCCEEECCCCCCHHHHHHHC--------------CCCCCCCCCCCCCCCCCCHHH-------------HHHHHHHHH
Q ss_conf 50301102013589856634312--------------898532222333446542000-------------001333323
Q gi|254780809|r 296 VENADLILLLKEINSKKEISFPK--------------NIDFIFIGTKSDLYSTYTEEY-------------DHLISSFTG 348 (440)
Q Consensus 296 i~~aDlil~v~D~~~~~~~~~~~--------------~~~~i~V~NK~Dl~~~~~~~~-------------~~~ISaktg 348 (440)
-..+--+|.|+|.++....+..+ ..-+++|..|+||.+...... -+..||++|
T Consensus 79 yrnsvgvllvyditnr~sfehv~~w~~ea~m~~q~P~k~VFlLVGhKsDL~SqRqVt~EEaEklAa~hgM~FVETSak~g 158 (213)
T KOG0091 79 YRNSVGVLLVYDITNRESFEHVENWVKEAAMATQGPDKVVFLLVGHKSDLQSQRQVTAEEAEKLAASHGMAFVETSAKNG 158 (213)
T ss_pred HHCCCCEEEEEECCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCHHHHCCCCHHHHHHHHHHCCCEEEEECCCCC
T ss_conf 65464169999635446677789999999985389970599985243101221111399999999965945898314578
Q ss_pred HHHHHHHHHHHHHH
Q ss_conf 23589999999996
Q gi|254780809|r 349 EGLEELINKIKSIL 362 (440)
Q Consensus 349 ~Gi~~L~~~I~~~l 362 (440)
.++++--+.|.+-+
T Consensus 159 ~NVeEAF~mlaqeI 172 (213)
T KOG0091 159 CNVEEAFDMLAQEI 172 (213)
T ss_pred CCHHHHHHHHHHHH
T ss_conf 76899999999999
No 292
>KOG0077 consensus
Probab=98.00 E-value=4.1e-05 Score=55.26 Aligned_cols=110 Identities=21% Similarity=0.285 Sum_probs=80.4
Q ss_pred HHHCCCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCCEEECCCCCCCCCEEEEEEECCHHCCCCHHHHHHHHHHHHHH
Q ss_conf 32023024311466318889999855200023454687211000124568358999508100024103566667888998
Q gi|254780809|r 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295 (440)
Q Consensus 216 l~~g~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTTRD~i~~~~~i~g~~~~l~DTaGir~t~d~IE~~GI~ra~~~ 295 (440)
.+.--+++..|--||||.||+|.|-....+ -..| |--.-++.+.|+|..++-+|.-|=.. .-+-..+.
T Consensus 17 ~kK~gKllFlGLDNAGKTTLLHMLKdDrl~--qhvP--TlHPTSE~l~Ig~m~ftt~DLGGH~q--------Arr~wkdy 84 (193)
T KOG0077 17 YKKFGKLLFLGLDNAGKTTLLHMLKDDRLG--QHVP--TLHPTSEELSIGGMTFTTFDLGGHLQ--------ARRVWKDY 84 (193)
T ss_pred HCCCCEEEEEEECCCCHHHHHHHHCCCCCC--CCCC--CCCCCHHHHEECCCEEEEECCCCHHH--------HHHHHHHH
T ss_conf 436751899951577526689887330011--3578--76897677313571589972566799--------99888878
Q ss_pred HHHHCCEEECCCCCCHHH-------------HHHHCCCCCCCCCCCCCCCCCCCH
Q ss_conf 503011020135898566-------------343128985322223334465420
Q gi|254780809|r 296 VENADLILLLKEINSKKE-------------ISFPKNIDFIFIGTKSDLYSTYTE 337 (440)
Q Consensus 296 i~~aDlil~v~D~~~~~~-------------~~~~~~~~~i~V~NK~Dl~~~~~~ 337 (440)
.-.+|-+++++|+-+..- .+.+++.|.++..||+|......+
T Consensus 85 f~~v~~iv~lvda~d~er~~es~~el~~ll~~e~la~vp~lilgnKId~~~a~se 139 (193)
T KOG0077 85 FPQVDAIVYLVDAYDQERFAESKKELDALLSDESLATVPFLILGNKIDIPYAASE 139 (193)
T ss_pred HHHHCEEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEECCCCCCCCCCCH
T ss_conf 7654316853011217776778999998876887715861011165568873337
No 293
>KOG0093 consensus
Probab=97.98 E-value=4.2e-05 Score=55.20 Aligned_cols=135 Identities=22% Similarity=0.303 Sum_probs=86.0
Q ss_pred CCEEEECCCCCCHHHHHHHHHCCHH--CCCCCCCCCCEEECCCCC--CCCCEEEEEEECCHHCCCCHHHHHHHHHHHHHH
Q ss_conf 3024311466318889999855200--023454687211000124--568358999508100024103566667888998
Q gi|254780809|r 220 YKIVILGHSNAGKSSLFNALAKKDV--AIVTDIPGTTRDVLTIDL--DLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295 (440)
Q Consensus 220 ~~v~i~G~pN~GKSSL~N~L~~~~~--aIVs~~~GTTRD~i~~~~--~i~g~~~~l~DTaGir~t~d~IE~~GI~ra~~~ 295 (440)
+++.|+|...|||.|++-+.++..- |-||-. |- |.--..+ .-.-+.+.+.||||.- +. -.-+-..
T Consensus 22 fKlliiGnssvGKTSfl~ry~ddSFt~afvsTv-Gi--dFKvKTvyr~~kRiklQiwDTagqE-------ry-rtiTTay 90 (193)
T KOG0093 22 FKLLIIGNSSVGKTSFLFRYADDSFTSAFVSTV-GI--DFKVKTVYRSDKRIKLQIWDTAGQE-------RY-RTITTAY 90 (193)
T ss_pred EEEEEECCCCCCCHHHHHHHHCCCCCCCEEEEE-EE--EEEEEEEEECCCEEEEEEEECCCCH-------HH-HHHHHHH
T ss_conf 268997268766213557760655440004663-11--3788676514647788987166510-------35-6777887
Q ss_pred HHHHCCEEECCCCCCHHHHHH-------H-----CCCCCCCCCCCCCCCCCCCHHH-------------HHHHHHHHHHH
Q ss_conf 503011020135898566343-------1-----2898532222333446542000-------------00133332323
Q gi|254780809|r 296 VENADLILLLKEINSKKEISF-------P-----KNIDFIFIGTKSDLYSTYTEEY-------------DHLISSFTGEG 350 (440)
Q Consensus 296 i~~aDlil~v~D~~~~~~~~~-------~-----~~~~~i~V~NK~Dl~~~~~~~~-------------~~~ISaktg~G 350 (440)
...|+-+++++|.++...... + .+.++|+|.||||+-+...... -+..|||.+-+
T Consensus 91 yRgamgfiLmyDitNeeSf~svqdw~tqIktysw~naqvilvgnKCDmd~eRvis~e~g~~l~~~LGfefFEtSaK~Nin 170 (193)
T KOG0093 91 YRGAMGFILMYDITNEESFNSVQDWITQIKTYSWDNAQVILVGNKCDMDSERVISHERGRQLADQLGFEFFETSAKENIN 170 (193)
T ss_pred HHCCCEEEEEEECCCHHHHHHHHHHHHHHEEEECCCCEEEEEECCCCCCCCEEEEHHHHHHHHHHHCHHHHHHCCCCCCC
T ss_conf 61464599998547878889899898875034316861899804557743200127888899998484775513302666
Q ss_pred HHHHHHHHHHHHHHH
Q ss_conf 589999999996322
Q gi|254780809|r 351 LEELINKIKSILSNK 365 (440)
Q Consensus 351 i~~L~~~I~~~l~~~ 365 (440)
++.+.+++...+...
T Consensus 171 Vk~~Fe~lv~~Ic~k 185 (193)
T KOG0093 171 VKQVFERLVDIICDK 185 (193)
T ss_pred HHHHHHHHHHHHHHH
T ss_conf 999999999999877
No 294
>cd01882 BMS1 Bms1. Bms1 is an essential, evolutionarily conserved, nucleolar protein. Its depletion interferes with processing of the 35S pre-rRNA at sites A0, A1, and A2, and the formation of 40S subunits. Bms1, the putative endonuclease Rc11, and the essential U3 small nucleolar RNA form a stable subcomplex that is believed to control an early step in the formation of the 40S subumit. The C-terminal domain of Bms1 contains a GTPase-activating protein (GAP) that functions intramolecularly. It is believed that Rc11 activates Bms1 by acting as a guanine-nucleotide exchange factor (GEF) to promote GDP/GTP exchange, and that activated (GTP-bound) Bms1 delivers Rc11 to the preribosomes.
Probab=97.97 E-value=0.0001 Score=52.50 Aligned_cols=102 Identities=20% Similarity=0.276 Sum_probs=63.5
Q ss_pred CCCEEEECCCCCCHHHHHHHHHCCHHC-CCCCCCCCCEEECCCCCCCCCEEEEEEECCHHCCCCHHHHHHHHHHHHHHHH
Q ss_conf 230243114663188899998552000-2345468721100012456835899950810002410356666788899850
Q gi|254780809|r 219 GYKIVILGHSNAGKSSLFNALAKKDVA-IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297 (440)
Q Consensus 219 g~~v~i~G~pN~GKSSL~N~L~~~~~a-IVs~~~GTTRD~i~~~~~i~g~~~~l~DTaGir~t~d~IE~~GI~ra~~~i~ 297 (440)
.+-|+++|||.+|||||+..|.....- -++++-|--. ++ .=....++|+..+ |.|.. -+..++
T Consensus 39 P~vVavvGPpgvGKtTLiksLvk~ytk~~l~~i~GPiT-vv----s~K~rRiTfiEc~------nDi~s-----miD~AK 102 (225)
T cd01882 39 PLVVAVVGPPGVGKTTLIKSLVKNYTKQNISDIKGPIT-VV----TGKKRRLTFIECP------NDINA-----MIDIAK 102 (225)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCEE-EE----ECCCEEEEEEECC------CHHHH-----HHHHHH
T ss_conf 96999989899778899999999985443755788879-99----4684268999748------60999-----987887
Q ss_pred HHCCEEECCCCCCHH---HHHHH-----CCC-CCCCCCCCCCCCCCCC
Q ss_conf 301102013589856---63431-----289-8532222333446542
Q gi|254780809|r 298 NADLILLLKEINSKK---EISFP-----KNI-DFIFIGTKSDLYSTYT 336 (440)
Q Consensus 298 ~aDlil~v~D~~~~~---~~~~~-----~~~-~~i~V~NK~Dl~~~~~ 336 (440)
-||++|+++|++-.- ..+++ -+. +++-|++-.|+..+.+
T Consensus 103 vADlVLl~iD~s~GfEmEtfEfLnilq~hG~PkV~GVltHlD~fk~~k 150 (225)
T cd01882 103 VADLVLLLIDASFGFEMETFEFLNILQVHGFPRVMGVLTHLDLFKKNK 150 (225)
T ss_pred HHHEEEEEECCCCCEEEEHHHHHHHHHHCCCCCEEEEEECCCCCCCHH
T ss_conf 643368886166553520899999999759994378854431015578
No 295
>KOG0088 consensus
Probab=97.92 E-value=8.1e-06 Score=60.16 Aligned_cols=132 Identities=22% Similarity=0.272 Sum_probs=86.5
Q ss_pred CCCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCCE--EECCCCCCCCCE--EEEEEECCHHCC--CCHHHHHHHHHHH
Q ss_conf 2302431146631888999985520002345468721--100012456835--899950810002--4103566667888
Q gi|254780809|r 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR--DVLTIDLDLEGY--LVKISDTAGIRE--TDDIVEKEGIKRT 292 (440)
Q Consensus 219 g~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTTR--D~i~~~~~i~g~--~~~l~DTaGir~--t~d~IE~~GI~ra 292 (440)
.+++++.|.--|||+||.=+.+..+- +...=+|- -.+...+++++. ...+.||||--. +-.+|
T Consensus 13 ~FK~VLLGEGCVGKtSLVLRy~EnkF---n~kHlsTlQASF~~kk~n~ed~ra~L~IWDTAGQErfHALGPI-------- 81 (218)
T KOG0088 13 KFKIVLLGEGCVGKTSLVLRYVENKF---NCKHLSTLQASFQNKKVNVEDCRADLHIWDTAGQERFHALGPI-------- 81 (218)
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHHC---CHHHHHHHHHHHHHCCCCCCCCEEEEEEEECCCHHHHHCCCCE--------
T ss_conf 26899974875560689999987232---3046789998876330462111311432124445765235753--------
Q ss_pred HHHHHHHCCEEECCCCCCHHHHHHHC------------CCCCCCCCCCCCCCCCCCHH-------------HHHHHHHHH
Q ss_conf 99850301102013589856634312------------89853222233344654200-------------000133332
Q gi|254780809|r 293 FLEVENADLILLLKEINSKKEISFPK------------NIDFIFIGTKSDLYSTYTEE-------------YDHLISSFT 347 (440)
Q Consensus 293 ~~~i~~aDlil~v~D~~~~~~~~~~~------------~~~~i~V~NK~Dl~~~~~~~-------------~~~~ISakt 347 (440)
.-..+|-.|+|+|.++.+.++..+ ...+++|.||+||-...... .....|||.
T Consensus 82 --YYRgSnGalLVyDITDrdSFqKVKnWV~Elr~mlGnei~l~IVGNKiDLEeeR~Vt~qeAe~YAesvGA~y~eTSAk~ 159 (218)
T KOG0088 82 --YYRGSNGALLVYDITDRDSFQKVKNWVLELRTMLGNEIELLIVGNKIDLEEERQVTRQEAEAYAESVGALYMETSAKD 159 (218)
T ss_pred --EEECCCCEEEEEECCCHHHHHHHHHHHHHHHHHHCCEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHCHHHEECCCCC
T ss_conf --770799628998644468899999999999987188359999537446788642029889999986333431111102
Q ss_pred HHHHHHHHHHHHHHHH
Q ss_conf 3235899999999963
Q gi|254780809|r 348 GEGLEELINKIKSILS 363 (440)
Q Consensus 348 g~Gi~~L~~~I~~~l~ 363 (440)
+.||.+|.+.+.+.+-
T Consensus 160 N~Gi~elFe~Lt~~Mi 175 (218)
T KOG0088 160 NVGISELFESLTAKMI 175 (218)
T ss_pred CCCHHHHHHHHHHHHH
T ss_conf 4379999999999999
No 296
>pfam04670 Gtr1_RagA Gtr1/RagA G protein conserved region. GTR1 was first identified in S. cerevisiae as a suppressor of a mutation in RCC1. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1. Included in this family is the human Rag C, a novel protein that has been shown to interact with RagA/B.
Probab=97.92 E-value=2.7e-05 Score=56.57 Aligned_cols=113 Identities=19% Similarity=0.229 Sum_probs=74.3
Q ss_pred CEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCCEEECCCCCCC-CCEEEEEEECCHHCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 02431146631888999985520002345468721100012456-83589995081000241035666678889985030
Q gi|254780809|r 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299 (440)
Q Consensus 221 ~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTTRD~i~~~~~i-~g~~~~l~DTaGir~t~d~IE~~GI~ra~~~i~~a 299 (440)
||.+.|++.+||||.-..+...-.+-=|-.-|.|-|+-...+.. +..++.+.|.||--. ..|.---...-......
T Consensus 1 KiLLMG~~~sGKTSi~~vIF~~~~p~dT~~L~~T~~ve~~~v~~~~~l~l~iwD~pGq~~---f~e~~~~~~~e~if~~v 77 (230)
T pfam04670 1 KVLLMGLRGSGKSSMRSIIFSNYSPRDTLRLGATIDVEQSHVRFLGNLTLNLWDCPGQDD---FMENYLTRQKEHIFSNV 77 (230)
T ss_pred CEEEECCCCCCHHHHHHHHHCCCCHHHHCCCCCCCCEEEEEEECCCCCEEEEEECCCCHH---HHHHHCCCCHHHHHHCC
T ss_conf 978756899987776999867998214120257777677877416873689997698353---54412002235476447
Q ss_pred CCEEECCCCCCHHHHH--------------HHCCCCCCCCCCCCCCCCCCC
Q ss_conf 1102013589856634--------------312898532222333446542
Q gi|254780809|r 300 DLILLLKEINSKKEIS--------------FPKNIDFIFIGTKSDLYSTYT 336 (440)
Q Consensus 300 Dlil~v~D~~~~~~~~--------------~~~~~~~i~V~NK~Dl~~~~~ 336 (440)
..++||+|+.+.+... ...+.++-+.+.|+|+.+...
T Consensus 78 ~~lIyV~D~q~~~~~~~l~~~~~~l~~~~~~sp~~~v~vfiHK~D~l~~d~ 128 (230)
T pfam04670 78 GVLIYVFDVESREYEEDLATLVKIIEALYQYSPNAKVFVLIHKMDLLSEDE 128 (230)
T ss_pred CEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCHHH
T ss_conf 889999968886099999999999999998399988999996035888667
No 297
>COG4917 EutP Ethanolamine utilization protein [Amino acid transport and metabolism]
Probab=97.91 E-value=1.4e-05 Score=58.50 Aligned_cols=125 Identities=22% Similarity=0.258 Sum_probs=83.4
Q ss_pred CEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCCEEECCCCCCCCCEEEEEEECCHHCCCCHHHHHHHHHHHHHHHHHHC
Q ss_conf 02431146631888999985520002345468721100012456835899950810002410356666788899850301
Q gi|254780809|r 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENAD 300 (440)
Q Consensus 221 ~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTTRD~i~~~~~i~g~~~~l~DTaGir~t~d~IE~~GI~ra~~~i~~aD 300 (440)
|++.+|+...||.||+|.|-|.+.- +--| .-++++.. -.+||||---.+ +.+..--.-...++|
T Consensus 3 ri~~vG~~gcGKTtL~q~L~G~~~l-----ykKT-----QAve~~d~--~~IDTPGEy~~~----~~~Y~aL~tt~~dad 66 (148)
T COG4917 3 RIAFVGQVGCGKTTLFQSLYGNDTL-----YKKT-----QAVEFNDK--GDIDTPGEYFEH----PRWYHALITTLQDAD 66 (148)
T ss_pred EEEEECCCCCCCHHHHHHHHCCHHH-----HCCC-----CEEECCCC--CCCCCCHHHHHH----HHHHHHHHHHHHCCC
T ss_conf 0687514565731678886160332-----1000-----01330475--565880666524----678999988761133
Q ss_pred CEEECCCCCCHHH-----HHHHCCCCCCCCCCCCCCCCCCC------------HHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 1020135898566-----34312898532222333446542------------0000013333232358999999999
Q gi|254780809|r 301 LILLLKEINSKKE-----ISFPKNIDFIFIGTKSDLYSTYT------------EEYDHLISSFTGEGLEELINKIKSI 361 (440)
Q Consensus 301 lil~v~D~~~~~~-----~~~~~~~~~i~V~NK~Dl~~~~~------------~~~~~~ISaktg~Gi~~L~~~I~~~ 361 (440)
++.+|..++++.. +..+-.+|+|-|++|.||.+... ....+.+|+.++.|+++|.+.+...
T Consensus 67 vi~~v~~and~~s~f~p~f~~~~~k~vIgvVTK~DLaed~dI~~~~~~L~eaGa~~iF~~s~~d~~gv~~l~~~L~~~ 144 (148)
T COG4917 67 VIIYVHAANDPESRFPPGFLDIGVKKVIGVVTKADLAEDADISLVKRWLREAGAEPIFETSAVDNQGVEELVDYLASL 144 (148)
T ss_pred EEEEEECCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 255430026844448842134466655899860346646768999999997487526887255831199999999740
No 298
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=97.91 E-value=2.2e-05 Score=57.07 Aligned_cols=143 Identities=16% Similarity=0.171 Sum_probs=88.1
Q ss_pred HHHHHHHCC-CEEEECCCCCCHHHHHHHHHCC---H---HCCCCCCCCCCEEECCCCCCCCCEEEEEEECCHHCCCCHHH
Q ss_conf 455432023-0243114663188899998552---0---00234546872110001245683589995081000241035
Q gi|254780809|r 212 LGEIIRNGY-KIVILGHSNAGKSSLFNALAKK---D---VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIV 284 (440)
Q Consensus 212 ~~~~l~~g~-~v~i~G~pN~GKSSL~N~L~~~---~---~aIVs~~~GTTRD~i~~~~~i~g~~~~l~DTaGir~t~d~I 284 (440)
+...-..|+ -+-+++-|-+||.||+-+.+.. + ..|+.|+. |++|. .++.--|+|+.=+.|-|- -..
T Consensus 96 R~~f~~~gv~~lNl~sSPGSGKTtLLe~ti~~L~~~~~~aVIeGD~~-T~~DA--~RI~~~Gv~avQInTG~~----CHL 168 (290)
T PRK10463 96 RARFAARKQLVLNLVSSPGSGKTTLLTETLMRLKDSVPCAVIEGDQQ-TVNDA--ARIRATGTPAIQVNTGKG----CHL 168 (290)
T ss_pred HHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCC-CHHHH--HHHHHCCCCEEEECCCCC----CCC
T ss_conf 99999879189993069987889999999998733675799960423-56679--999976995899547997----675
Q ss_pred HHHHHHHHHHHHHHHCCEEECCC-CCC---HHHHH-----------HH--CCC----------CCCCCCCCCCCCCCCCH
Q ss_conf 66667888998503011020135-898---56634-----------31--289----------85322223334465420
Q gi|254780809|r 285 EKEGIKRTFLEVENADLILLLKE-INS---KKEIS-----------FP--KNI----------DFIFIGTKSDLYSTYTE 337 (440)
Q Consensus 285 E~~GI~ra~~~i~~aDlil~v~D-~~~---~~~~~-----------~~--~~~----------~~i~V~NK~Dl~~~~~~ 337 (440)
+...|.+++..+.-.++=+++++ .-+ +..++ .. .+| --++|+||+||.+...-
T Consensus 169 DA~MV~~al~~l~l~~~dllfIENVGNLVCPA~FDLGE~~kVvvlSVtEGeDKPlKYP~mF~~ad~vlinKiDLlp~~dF 248 (290)
T PRK10463 169 DAQMIADAAPRLPLDDNGILFIENVGNLVCPASFDLGEKHKVAVLSVTEGEDKPLKYPHMFAAASLMLLNKVDLLPYLNF 248 (290)
T ss_pred CHHHHHHHHHHCCCCCCCEEEEECCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCHHHHHHCCEEEEEHHHHHHHCCC
T ss_conf 99999999984898779899981278843551203677617999970688886444766764257899865651220288
Q ss_pred ---------------HHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf ---------------000013333232358999999999
Q gi|254780809|r 338 ---------------EYDHLISSFTGEGLEELINKIKSI 361 (440)
Q Consensus 338 ---------------~~~~~ISaktg~Gi~~L~~~I~~~ 361 (440)
-..+.+||+||+|++.+.+-|...
T Consensus 249 D~~~~~~~~~~vNp~~~v~~vSa~tGeGld~W~~WL~~~ 287 (290)
T PRK10463 249 DVEKCIACAREVNPEIEIILISATSGEGMDQWLNWLETQ 287 (290)
T ss_pred CHHHHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 999999999986989858997568887899999999997
No 299
>TIGR03596 GTPase_YlqF ribosome biogenesis GTP-binding protein YlqF. Members of this protein family are GTP-binding proteins involved in ribosome biogenesis, including the essential YlqF protein of Bacillus subtilis, which is an essential protein. They are related to Era, EngA, and other GTPases of ribosome biogenesis, but are circularly permuted. This family is not universal, and is not present in Escherichia coli, and so is not as well studied as some other GTPases. This model is built for bacterial members.
Probab=97.87 E-value=2.3e-05 Score=57.05 Aligned_cols=76 Identities=14% Similarity=0.177 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHHCCEEECCCCCCH------HHHHHHCCCCCCCCCCCCCCCCCCCHH-----------HHHHHHHHHHHH
Q ss_conf 678889985030110201358985------663431289853222233344654200-----------000133332323
Q gi|254780809|r 288 GIKRTFLEVENADLILLLKEINSK------KEISFPKNIDFIFIGTKSDLYSTYTEE-----------YDHLISSFTGEG 350 (440)
Q Consensus 288 GI~ra~~~i~~aDlil~v~D~~~~------~~~~~~~~~~~i~V~NK~Dl~~~~~~~-----------~~~~ISaktg~G 350 (440)
+.++-.+.++.+|+|+.|.|+..+ .......++|.|+|+||+||.+..... ..+++||+.+.|
T Consensus 11 a~~~l~~~l~~~DvileV~DAR~Pl~~~n~~l~~~~~~K~~ilvlNK~DL~~~~~~~~w~~~~~~~~~~~~~~sa~~~~~ 90 (276)
T TIGR03596 11 ARREIKEKLKLVDVVIEVLDARIPLSSRNPMIDEIRGNKPRLIVLNKADLADPAVTKQWLKYFEQKGIKALAINAKKGKG 90 (276)
T ss_pred HHHHHHHHHHHCCEEEEEEECCCCCCCCCHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEHHCCCCC
T ss_conf 99999999875999999986778878689759998669967999734345999999999999984399189864307453
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 5899999999963
Q gi|254780809|r 351 LEELINKIKSILS 363 (440)
Q Consensus 351 i~~L~~~I~~~l~ 363 (440)
+..|.+.+.+.+.
T Consensus 91 ~~~l~~~~~~~~~ 103 (276)
T TIGR03596 91 VKKIIKAAKKLLK 103 (276)
T ss_pred HHHHHHHHHHHHH
T ss_conf 8999999999999
No 300
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=97.85 E-value=2.4e-05 Score=56.86 Aligned_cols=139 Identities=22% Similarity=0.259 Sum_probs=79.4
Q ss_pred CCEEEECCCCCCHHHHHHHHHCC-----HHCCCCCCCCCCEEECCCCCCCCCEEEEEEECC-HHCCCCHHHHHHHHHHHH
Q ss_conf 30243114663188899998552-----000234546872110001245683589995081-000241035666678889
Q gi|254780809|r 220 YKIVILGHSNAGKSSLFNALAKK-----DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA-GIRETDDIVEKEGIKRTF 293 (440)
Q Consensus 220 ~~v~i~G~pN~GKSSL~N~L~~~-----~~aIVs~~~GTTRD~i~~~~~i~g~~~~l~DTa-Gir~t~d~IE~~GI~ra~ 293 (440)
.+|-+.|+|-+||.+|+-+++.. +.|.|+.=-=|+.|.-.-.-. -|.++.=+-|- |=|+ ++..-..+++.-.
T Consensus 14 ~~i~v~Gp~GSGKTaLie~~~~~L~~~~~~aVI~~Di~t~~Da~~l~~~-~g~~i~~v~TG~~CH~-da~m~~~ai~~l~ 91 (202)
T COG0378 14 LRIGVGGPPGSGKTALIEKTLRALKDEYKIAVITGDIYTKEDADRLRKL-PGEPIIGVETGKGCHL-DASMNLEAIEELV 91 (202)
T ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHHCCEEEEECEEECHHHHHHHHHC-CCCEEEEECCCCCCCC-CHHHHHHHHHHHH
T ss_conf 8999617998678999999999997527768996404006559999737-7980687403876588-6788999999986
Q ss_pred HHHHHHCCEE---------------------ECCCCCCHHHHHHHCCC-----CCCCCCCCCCCCCCCCH----------
Q ss_conf 9850301102---------------------01358985663431289-----85322223334465420----------
Q gi|254780809|r 294 LEVENADLIL---------------------LLKEINSKKEISFPKNI-----DFIFIGTKSDLYSTYTE---------- 337 (440)
Q Consensus 294 ~~i~~aDlil---------------------~v~D~~~~~~~~~~~~~-----~~i~V~NK~Dl~~~~~~---------- 337 (440)
......|+++ +|+|..+-..... |.- --++|+||.||.+...-
T Consensus 92 ~~~~~~Dll~iEs~GNL~~~~sp~L~d~~~v~VidvteGe~~P~-K~gP~i~~aDllVInK~DLa~~v~~dlevm~~da~ 170 (202)
T COG0378 92 LDFPDLDLLFIESVGNLVCPFSPDLGDHLRVVVIDVTEGEDIPR-KGGPGIFKADLLVINKTDLAPYVGADLEVMARDAK 170 (202)
T ss_pred HCCCCCCEEEEECCCCEECCCCCCHHHCEEEEEEECCCCCCCCC-CCCCCEEEEEEEEEEHHHHHHHHCCCHHHHHHHHH
T ss_conf 31776778999237643244680413046999998788888765-57996467418998567738772866999999999
Q ss_pred -----HHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf -----000013333232358999999999
Q gi|254780809|r 338 -----EYDHLISSFTGEGLEELINKIKSI 361 (440)
Q Consensus 338 -----~~~~~ISaktg~Gi~~L~~~I~~~ 361 (440)
...+++|++||+|++++++.+...
T Consensus 171 ~~np~~~ii~~n~ktg~G~~~~~~~i~~~ 199 (202)
T COG0378 171 EVNPEAPIIFTNLKTGEGLDEWLRFIEPQ 199 (202)
T ss_pred HHCCCCCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 84999988998478786899999998764
No 301
>KOG2655 consensus
Probab=97.84 E-value=3.7e-05 Score=55.58 Aligned_cols=123 Identities=20% Similarity=0.373 Sum_probs=72.9
Q ss_pred HHHHHHHC--CCEEEECCCCCCHHHHHHHHHCCHHCC------CCCCCCCCEEECCCCCCC--CCE--EEEEEECCHHCC
Q ss_conf 45543202--302431146631888999985520002------345468721100012456--835--899950810002
Q gi|254780809|r 212 LGEIIRNG--YKIVILGHSNAGKSSLFNALAKKDVAI------VTDIPGTTRDVLTIDLDL--EGY--LVKISDTAGIRE 279 (440)
Q Consensus 212 ~~~~l~~g--~~v~i~G~pN~GKSSL~N~L~~~~~aI------Vs~~~GTTRD~i~~~~~i--~g~--~~~l~DTaGir~ 279 (440)
..+..+.| +++.++|..-.|||||+|.|++.+..= .+..|-.|-.+......+ +|+ .++++||||+.+
T Consensus 12 ~r~~~KkG~~ftlmvvG~sGlGKsTfiNsLf~~~l~~~~~~~~~~~~~~~t~~i~~~~~~iee~g~~l~LtvidtPGfGD 91 (366)
T KOG2655 12 HRKSVKKGFDFTLMVVGESGLGKSTFINSLFLTDLSGNREVPGASERIKETVEIESTKVEIEENGVKLNLTVIDTPGFGD 91 (366)
T ss_pred HHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCEEEEEEEECCCCCCC
T ss_conf 99987458733899855887638899988886532577666775567655311322323763797488767843699865
Q ss_pred CCH----------HH---------HHHHHHHHHHHHHHHCCEEECCCCCC----HHHHHHH----CCCCCCCCCCCCCCC
Q ss_conf 410----------35---------66667888998503011020135898----5663431----289853222233344
Q gi|254780809|r 280 TDD----------IV---------EKEGIKRTFLEVENADLILLLKEINS----KKEISFP----KNIDFIFIGTKSDLY 332 (440)
Q Consensus 280 t~d----------~I---------E~~GI~ra~~~i~~aDlil~v~D~~~----~~~~~~~----~~~~~i~V~NK~Dl~ 332 (440)
.-| .| +..++.|+...-..-++.||.+.++. +-++..+ ...++|.|+-|+|..
T Consensus 92 ~vdns~~w~pi~~yi~~q~~~yl~~E~~~~R~~~~D~RVH~cLYFI~P~ghgL~p~Di~~Mk~l~~~vNiIPVI~KaD~l 171 (366)
T KOG2655 92 AVDNSNCWRPIVNYIDSQFDQYLDEESRLNRSKIKDNRVHCCLYFISPTGHGLKPLDIEFMKKLSKKVNLIPVIAKADTL 171 (366)
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHCCCCCCCEEECCCCC
T ss_conf 44651243235678999999998602368865566884489999837888888686699999773256610316405668
Q ss_pred CC
Q ss_conf 65
Q gi|254780809|r 333 ST 334 (440)
Q Consensus 333 ~~ 334 (440)
..
T Consensus 172 T~ 173 (366)
T KOG2655 172 TK 173 (366)
T ss_pred CH
T ss_conf 98
No 302
>KOG1144 consensus
Probab=97.80 E-value=0.0001 Score=52.55 Aligned_cols=139 Identities=22% Similarity=0.239 Sum_probs=86.3
Q ss_pred HHHHHHCCCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCCEEECCCCCC-------------------CCCEEEEEEE
Q ss_conf 554320230243114663188899998552000234546872110001245-------------------6835899950
Q gi|254780809|r 213 GEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLD-------------------LEGYLVKISD 273 (440)
Q Consensus 213 ~~~l~~g~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTTRD~i~~~~~-------------------i~g~~~~l~D 273 (440)
...+|..+ ++|.|....||.-|+..|-+.++- -..+|+..-.|.+++. +.---+.++|
T Consensus 470 ~~~lRSPI-cCilGHVDTGKTKlld~ir~tNVq--egeaggitqqIgAt~fp~~ni~e~tk~~~~~~K~~~kvPg~lvId 546 (1064)
T KOG1144 470 TENLRSPI-CCILGHVDTGKTKLLDKIRGTNVQ--EGEAGGITQQIGATYFPAENIREKTKELKKDAKKRLKVPGLLVID 546 (1064)
T ss_pred HHHCCCCE-EEEEECCCCCCHHHHHHHHCCCCC--CCCCCCEEEECCCCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEC
T ss_conf 13236863-789711126605788876205532--244566000005411526778999999875023313787048965
Q ss_pred CCHHCCCCHHHHHHHHHHHHHHHHHHCCEEECCCCCCH---HH---H--HHHCCCCCCCCCCCCCCCCCCCHHH------
Q ss_conf 81000241035666678889985030110201358985---66---3--4312898532222333446542000------
Q gi|254780809|r 274 TAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSK---KE---I--SFPKNIDFIFIGTKSDLYSTYTEEY------ 339 (440)
Q Consensus 274 TaGir~t~d~IE~~GI~ra~~~i~~aDlil~v~D~~~~---~~---~--~~~~~~~~i~V~NK~Dl~~~~~~~~------ 339 (440)
|||- + ...--|+ .-..-+|+.++|+|.... +. + ...++.|+|+.+||+|.+-.|....
T Consensus 547 tpgh-E------sFtnlRs-rgsslC~~aIlvvdImhGlepqtiESi~lLR~rktpFivALNKiDRLYgwk~~p~~~i~~ 618 (1064)
T KOG1144 547 TPGH-E------SFTNLRS-RGSSLCDLAILVVDIMHGLEPQTIESINLLRMRKTPFIVALNKIDRLYGWKSCPNAPIVE 618 (1064)
T ss_pred CCCC-H------HHHHHHH-CCCCCCCEEEEEEEHHCCCCCCHHHHHHHHHHCCCCEEEEEHHHHHHCCCCCCCCCHHHH
T ss_conf 8872-5------5555665-043345537778531116774206789988754897598610134440442489831999
Q ss_pred ---------------------------------------------HHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf ---------------------------------------------00133332323589999999996
Q gi|254780809|r 340 ---------------------------------------------DHLISSFTGEGLEELINKIKSIL 362 (440)
Q Consensus 340 ---------------------------------------------~~~ISaktg~Gi~~L~~~I~~~l 362 (440)
.+..||.+|+||..|+-.|.++.
T Consensus 619 ~lkkQ~k~v~~EF~~R~~~ii~efaEQgLN~~LyykNk~~~~~vsiVPTSA~sGeGipdLl~llv~lt 686 (1064)
T KOG1144 619 ALKKQKKDVQNEFKERLNNIIVEFAEQGLNAELYYKNKEMGETVSIVPTSAISGEGIPDLLLLLVQLT 686 (1064)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHEEECCCCCCEEEEEECCCCCCCCHHHHHHHHHHHH
T ss_conf 99874478999999999999999997110443423146746558862122136788078999999999
No 303
>PRK09563 rbgA ribosomal biogenesis GTPase; Reviewed
Probab=97.78 E-value=3.4e-05 Score=55.81 Aligned_cols=76 Identities=13% Similarity=0.137 Sum_probs=55.4
Q ss_pred HHHHHHHHHHHHCCEEECCCCCCH------HHHHHHCCCCCCCCCCCCCCCCCCCH-----------HHHHHHHHHHHHH
Q ss_conf 678889985030110201358985------66343128985322223334465420-----------0000133332323
Q gi|254780809|r 288 GIKRTFLEVENADLILLLKEINSK------KEISFPKNIDFIFIGTKSDLYSTYTE-----------EYDHLISSFTGEG 350 (440)
Q Consensus 288 GI~ra~~~i~~aDlil~v~D~~~~------~~~~~~~~~~~i~V~NK~Dl~~~~~~-----------~~~~~ISaktg~G 350 (440)
+.+.-.+.++.+|+|+.|.|+..+ ......+++|.|+|+||+||.+.... ...+++||+++.|
T Consensus 14 a~r~l~~~l~~~DvileV~DAR~Pl~~~n~~l~~~~~~K~~ilvlNK~DL~~~~~~~~w~~~~~~~~~~~~~~sa~~~~~ 93 (282)
T PRK09563 14 ARREIKENLKKVDVVIEVLDARIPLSSENPMIDKIIGNKPRLLVLNKSDLADPEVTKKWIEYFEEQGVKALAINAKEGQG 93 (282)
T ss_pred HHHHHHHHHHHCCEEEEEEECCCCCCCCCHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCC
T ss_conf 99999999876999999976547767588759999768976999755548899999999999970499569974667433
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 5899999999963
Q gi|254780809|r 351 LEELINKIKSILS 363 (440)
Q Consensus 351 i~~L~~~I~~~l~ 363 (440)
+..+.+.+.+.+.
T Consensus 94 ~~~l~~~~~~~~~ 106 (282)
T PRK09563 94 VKKILKAAKKLGK 106 (282)
T ss_pred HHHHHHHHHHHHH
T ss_conf 8899999999999
No 304
>KOG0461 consensus
Probab=97.76 E-value=9.7e-05 Score=52.67 Aligned_cols=144 Identities=21% Similarity=0.244 Sum_probs=88.2
Q ss_pred CCEEEECCCCCCHHHHHHHHHC--CHHC----CCCCCCCCCEEECCCCCCC---------CCEEEEEEECCHHCCCCHHH
Q ss_conf 3024311466318889999855--2000----2345468721100012456---------83589995081000241035
Q gi|254780809|r 220 YKIVILGHSNAGKSSLFNALAK--KDVA----IVTDIPGTTRDVLTIDLDL---------EGYLVKISDTAGIRETDDIV 284 (440)
Q Consensus 220 ~~v~i~G~pN~GKSSL~N~L~~--~~~a----IVs~~~GTTRD~i~~~~~i---------~g~~~~l~DTaGir~t~d~I 284 (440)
+.+.|.|....||.+|--+|.. .-.| =-|-..|-|-|.=-..+.. .-..+.|+|.||- ...
T Consensus 8 ~N~GiLGHvDSGKTtLarals~~~STaAFDk~pqS~eRgiTLDLGFS~~~v~~parLpq~e~lq~tlvDCPGH---asL- 83 (522)
T KOG0461 8 LNLGILGHVDSGKTTLARALSELGSTAAFDKHPQSTERGITLDLGFSTMTVLSPARLPQGEQLQFTLVDCPGH---ASL- 83 (522)
T ss_pred EEEEEEEECCCCHHHHHHHHHHHCCHHHHCCCCCCCCCCEEEEECCEEEECCCCCCCCCCCCCEEEEEECCCH---HHH-
T ss_conf 2443574025764899999986314033224875310462674122044135723378766412699717970---889-
Q ss_pred HHHHHHHHHHHHHHHCCEEECCCCCCHHH--------HHHHCCCCCCCCCCCCCCCCCCCH-------------------
Q ss_conf 66667888998503011020135898566--------343128985322223334465420-------------------
Q gi|254780809|r 285 EKEGIKRTFLEVENADLILLLKEINSKKE--------ISFPKNIDFIFIGTKSDLYSTYTE------------------- 337 (440)
Q Consensus 285 E~~GI~ra~~~i~~aDlil~v~D~~~~~~--------~~~~~~~~~i~V~NK~Dl~~~~~~------------------- 337 (440)
|+--+-.+.--|+.++|+|+....+ +..+--++.++|+||+|+.+....
T Consensus 84 ----IRtiiggaqiiDlm~lviDv~kG~QtQtAEcLiig~~~c~klvvvinkid~lpE~qr~ski~k~~kk~~KtLe~t~ 159 (522)
T KOG0461 84 ----IRTIIGGAQIIDLMILVIDVQKGKQTQTAECLIIGELLCKKLVVVINKIDVLPENQRASKIEKSAKKVRKTLESTG 159 (522)
T ss_pred ----HHHHHCCHHHHEEEEEEEEHHCCCCCCCCHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCC
T ss_conf ----9999710120013467886101766652145443766446269999501226530245678999999997787457
Q ss_pred ----HHHHHHHHHHH----HHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf ----00001333323----23589999999996322035886
Q gi|254780809|r 338 ----EYDHLISSFTG----EGLEELINKIKSILSNKFKKLPF 371 (440)
Q Consensus 338 ----~~~~~ISaktg----~Gi~~L~~~I~~~l~~~~~~~~~ 371 (440)
.+.+.+||+.| ++|.+|++.|...+.....+.+.
T Consensus 160 f~g~~PI~~vsa~~G~~~~~~i~eL~e~l~s~if~P~Rd~~g 201 (522)
T KOG0461 160 FDGNSPIVEVSAADGYFKEEMIQELKEALESRIFEPKRDEEG 201 (522)
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCCCCC
T ss_conf 688885267643787540667899999999762477768888
No 305
>KOG1954 consensus
Probab=97.75 E-value=4e-05 Score=55.36 Aligned_cols=112 Identities=28% Similarity=0.358 Sum_probs=69.5
Q ss_pred HCCCEEEECCCCCCHHHHHHHHHCCHHC--CCCC------------------CCCCCEEECCCCCCCCC-----------
Q ss_conf 0230243114663188899998552000--2345------------------46872110001245683-----------
Q gi|254780809|r 218 NGYKIVILGHSNAGKSSLFNALAKKDVA--IVTD------------------IPGTTRDVLTIDLDLEG----------- 266 (440)
Q Consensus 218 ~g~~v~i~G~pN~GKSSL~N~L~~~~~a--IVs~------------------~~GTTRD~i~~~~~i~g----------- 266 (440)
..+-|.++|+-..||||++|+|+..+-. -+.+ +||++- ++.....+.|
T Consensus 57 ~KPmill~GqyStGKTtfi~yLle~dypg~riGpEPTtd~Fi~vM~G~~e~~ipGnal-~vd~~~pF~gL~~FG~aflnR 135 (532)
T KOG1954 57 AKPMILLVGQYSTGKTTFIRYLLEQDYPGLRIGPEPTTDRFIAVMHGDEEGSIPGNAL-VVDAKKPFRGLNKFGNAFLNR 135 (532)
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCEE-EECCCCCHHHHHHHHHHHHHH
T ss_conf 6844899724666603999998717787554689997530689985586566678625-646877516566667999998
Q ss_pred -----------EEEEEEECCHHCCCCHHHHHHHHHHHH------H-HHHHHCCEEECCCCCCH-------HHHHHHCC--
Q ss_conf -----------589995081000241035666678889------9-85030110201358985-------66343128--
Q gi|254780809|r 267 -----------YLVKISDTAGIRETDDIVEKEGIKRTF------L-EVENADLILLLKEINSK-------KEISFPKN-- 319 (440)
Q Consensus 267 -----------~~~~l~DTaGir~t~d~IE~~GI~ra~------~-~i~~aDlil~v~D~~~~-------~~~~~~~~-- 319 (440)
-.+.++|||||-+. |+.+|.|.+ + -++.+|+|++|+|+-.- ..+..+++
T Consensus 136 f~csqmp~~vLe~vtiVdtPGILsg----eKQrisR~ydF~~v~~WFaeR~D~IiLlfD~hKLDIsdEf~~vi~aLkG~E 211 (532)
T KOG1954 136 FMCSQLPNQVLESVTIVDTPGILSG----EKQRISRGYDFTGVLEWFAERVDRIILLFDAHKLDISDEFKRVIDALKGHE 211 (532)
T ss_pred HHHHCCCHHHHHHEEEECCCCCCCC----CHHCCCCCCCHHHHHHHHHHHCCEEEEEECHHHCCCCHHHHHHHHHHHCCC
T ss_conf 8773387565500444236753201----222012367808899999974568999724664566678999999861886
Q ss_pred CCCCCCCCCCCCCCC
Q ss_conf 985322223334465
Q gi|254780809|r 320 IDFIFIGTKSDLYST 334 (440)
Q Consensus 320 ~~~i~V~NK~Dl~~~ 334 (440)
-++-+|+||+|....
T Consensus 212 dkiRVVLNKADqVdt 226 (532)
T KOG1954 212 DKIRVVLNKADQVDT 226 (532)
T ss_pred CEEEEEECCCCCCCH
T ss_conf 406888303244379
No 306
>KOG0095 consensus
Probab=97.74 E-value=0.0002 Score=50.53 Aligned_cols=136 Identities=24% Similarity=0.294 Sum_probs=89.4
Q ss_pred CCCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCCE--EECCCCCCCCC--EEEEEEECCHHCCCCHHHHHHHHHHHHH
Q ss_conf 2302431146631888999985520002345468721--10001245683--5899950810002410356666788899
Q gi|254780809|r 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR--DVLTIDLDLEG--YLVKISDTAGIRETDDIVEKEGIKRTFL 294 (440)
Q Consensus 219 g~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTTR--D~i~~~~~i~g--~~~~l~DTaGir~t~d~IE~~GI~ra~~ 294 (440)
-++|+++|...|||.-|.-+.++- +.-+--|.|- |..-..+.++| ++..+.||||- |+. -.-+..
T Consensus 7 lfkivlvgnagvgktclvrrftqg---lfppgqgatigvdfmiktvev~gekiklqiwdtagq-------erf-rsitqs 75 (213)
T KOG0095 7 LFKIVLVGNAGVGKTCLVRRFTQG---LFPPGQGATIGVDFMIKTVEVNGEKIKLQIWDTAGQ-------ERF-RSITQS 75 (213)
T ss_pred EEEEEEECCCCCCCCHHHHHHHCC---CCCCCCCCEEEEEEEEEEEEECCEEEEEEEEECCCH-------HHH-HHHHHH
T ss_conf 678999735776733004455226---789998766423379999998780899998413256-------888-888998
Q ss_pred HHHHHCCEEECCCCCCHH-------HH---HHHCCCC--CCCCCCCCCCCCCCCH-------------HHHHHHHHHHHH
Q ss_conf 850301102013589856-------63---4312898--5322223334465420-------------000013333232
Q gi|254780809|r 295 EVENADLILLLKEINSKK-------EI---SFPKNID--FIFIGTKSDLYSTYTE-------------EYDHLISSFTGE 349 (440)
Q Consensus 295 ~i~~aDlil~v~D~~~~~-------~~---~~~~~~~--~i~V~NK~Dl~~~~~~-------------~~~~~ISaktg~ 349 (440)
.-..|+-+++|.|.+..+ |+ +.-.+.+ -|+|.||+|+...... .+....||+..+
T Consensus 76 yyrsahalilvydiscqpsfdclpewlreie~yan~kvlkilvgnk~d~~drrevp~qigeefs~~qdmyfletsakea~ 155 (213)
T KOG0095 76 YYRSAHALILVYDISCQPSFDCLPEWLREIEQYANNKVLKILVGNKIDLADRREVPQQIGEEFSEAQDMYFLETSAKEAD 155 (213)
T ss_pred HHHHCCEEEEEEECCCCCCHHHHHHHHHHHHHHHHCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHH
T ss_conf 86411648999853457431013999999999850642787614665612333305888788877555665320200010
Q ss_pred HHHHHHHHHHHHHHHH
Q ss_conf 3589999999996322
Q gi|254780809|r 350 GLEELINKIKSILSNK 365 (440)
Q Consensus 350 Gi~~L~~~I~~~l~~~ 365 (440)
+++.|...+...+.+.
T Consensus 156 nve~lf~~~a~rli~~ 171 (213)
T KOG0095 156 NVEKLFLDLACRLISE 171 (213)
T ss_pred HHHHHHHHHHHHHHHH
T ss_conf 3999999999999888
No 307
>KOG0086 consensus
Probab=97.74 E-value=0.00014 Score=51.54 Aligned_cols=126 Identities=26% Similarity=0.324 Sum_probs=79.6
Q ss_pred CCEEEECCCCCCHHHHHHHHHCCHHC-CCCCCCCCCEEECCCCCCCCC--EEEEEEECCHHCCCCHHHHHHHHHHHHHHH
Q ss_conf 30243114663188899998552000-234546872110001245683--589995081000241035666678889985
Q gi|254780809|r 220 YKIVILGHSNAGKSSLFNALAKKDVA-IVTDIPGTTRDVLTIDLDLEG--YLVKISDTAGIRETDDIVEKEGIKRTFLEV 296 (440)
Q Consensus 220 ~~v~i~G~pN~GKSSL~N~L~~~~~a-IVs~~~GTTRD~i~~~~~i~g--~~~~l~DTaGir~t~d~IE~~GI~ra~~~i 296 (440)
++++++|+...|||-|+......+-- =+|..-|. |.-..-++.+| ++..+.||||- |+.- .-+...-
T Consensus 10 fKfl~iG~aGtGKSCLLh~Fie~kfkDdssHTiGv--eFgSrIinVGgK~vKLQIWDTAGQ-------ErFR-SVtRsYY 79 (214)
T KOG0086 10 FKFLVIGSAGTGKSCLLHQFIENKFKDDSSHTIGV--EFGSRIVNVGGKTVKLQIWDTAGQ-------ERFR-SVTRSYY 79 (214)
T ss_pred HEEEEECCCCCCHHHHHHHHHHHHCCCCCCCEEEE--EECCCEEEECCCEEEEEEEECCCH-------HHHH-HHHHHHH
T ss_conf 02688646888632799999986413654644202--201102540571899998634257-------8899-9999875
Q ss_pred HHHCCEEECCCCCCHHHHHHH------------CCCCCCCCCCCCCCCCCCCHHH-------------HHHHHHHHHHHH
Q ss_conf 030110201358985663431------------2898532222333446542000-------------001333323235
Q gi|254780809|r 297 ENADLILLLKEINSKKEISFP------------KNIDFIFIGTKSDLYSTYTEEY-------------DHLISSFTGEGL 351 (440)
Q Consensus 297 ~~aDlil~v~D~~~~~~~~~~------------~~~~~i~V~NK~Dl~~~~~~~~-------------~~~ISaktg~Gi 351 (440)
..|---++|.|.++++....+ .++-++++.||.||.+...... .+..||+||+++
T Consensus 80 RGAAGAlLVYD~TsrdsfnaLtnWL~DaR~lAs~nIvviL~GnKkDL~~~R~VtflEAs~FaqEnel~flETSa~TGeNV 159 (214)
T KOG0086 80 RGAAGALLVYDITSRDSFNALTNWLTDARTLASPNIVVILCGNKKDLDPEREVTFLEASRFAQENELMFLETSALTGENV 159 (214)
T ss_pred CCCCCEEEEEECCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCH
T ss_conf 36564279985245556999999888777647996799993771214412100389988663303111122023235568
Q ss_pred HHHH
Q ss_conf 8999
Q gi|254780809|r 352 EELI 355 (440)
Q Consensus 352 ~~L~ 355 (440)
++-.
T Consensus 160 EEaF 163 (214)
T KOG0086 160 EEAF 163 (214)
T ss_pred HHHH
T ss_conf 9999
No 308
>COG5257 GCD11 Translation initiation factor 2, gamma subunit (eIF-2gamma; GTPase) [Translation, ribosomal structure and biogenesis]
Probab=97.68 E-value=0.0001 Score=52.45 Aligned_cols=142 Identities=20% Similarity=0.170 Sum_probs=87.7
Q ss_pred CCCEEEECCCCCCHHHHHHHHHCC---------HHC--CCCCCCCCCE-----------EECCCCCCCCC------EEEE
Q ss_conf 230243114663188899998552---------000--2345468721-----------10001245683------5899
Q gi|254780809|r 219 GYKIVILGHSNAGKSSLFNALAKK---------DVA--IVTDIPGTTR-----------DVLTIDLDLEG------YLVK 270 (440)
Q Consensus 219 g~~v~i~G~pN~GKSSL~N~L~~~---------~~a--IVs~~~GTTR-----------D~i~~~~~i~g------~~~~ 270 (440)
-+.|..+|...-|||||.-+|+|- +|. |---++-++- -..+......| ..+.
T Consensus 10 ~vNIG~vGHVdHGKtTlv~AlsGvwT~~hseElkRgitIkLGYAd~~i~kC~~c~~~~~y~~~~~C~~cg~~~~l~R~VS 89 (415)
T COG5257 10 EVNIGMVGHVDHGKTTLTKALSGVWTDRHSEELKRGITIKLGYADAKIYKCPECYRPECYTTEPKCPNCGAETELVRRVS 89 (415)
T ss_pred CEEEEEEEECCCCHHHHEEHHHCEEEECHHHHHHCCCEEEECCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCEEEEEE
T ss_conf 14762342014662411003313343020688756847984025574575777788766234787777899730799999
Q ss_pred EEECCHHCCCCHHHHHHHHHHHHHHHHHHCCEEECCCCCCHH----------HHHHHCCCCCCCCCCCCCCCCCCCH---
Q ss_conf 950810002410356666788899850301102013589856----------6343128985322223334465420---
Q gi|254780809|r 271 ISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK----------EISFPKNIDFIFIGTKSDLYSTYTE--- 337 (440)
Q Consensus 271 l~DTaGir~t~d~IE~~GI~ra~~~i~~aDlil~v~D~~~~~----------~~~~~~~~~~i~V~NK~Dl~~~~~~--- 337 (440)
|+|.||- |+ + +.--+.-+.--|-.|+|+.++++. -++.+.-+++++|.||+||.+...-
T Consensus 90 fVDaPGH-e~------L-MATMLsGAAlMDgAlLvIaANEpcPQPQT~EHl~AleIigik~iiIvQNKIDlV~~E~AlE~ 161 (415)
T COG5257 90 FVDAPGH-ET------L-MATMLSGAALMDGALLVIAANEPCPQPQTREHLMALEIIGIKNIIIVQNKIDLVSRERALEN 161 (415)
T ss_pred EEECCCH-HH------H-HHHHHCCHHHHCCEEEEEECCCCCCCCCHHHHHHHHHHHCCCEEEEEECCCCEECHHHHHHH
T ss_conf 7407966-99------9-99886023442153899953898989731877887766265339999523011159998887
Q ss_pred ---------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf ---------------0000133332323589999999996322035
Q gi|254780809|r 338 ---------------EYDHLISSFTGEGLEELINKIKSILSNKFKK 368 (440)
Q Consensus 338 ---------------~~~~~ISaktg~Gi~~L~~~I~~~l~~~~~~ 368 (440)
.+.+.|||..+.+||.|.++|.+.+.....+
T Consensus 162 y~qIk~FvkGt~Ae~aPIIPiSA~~~~NIDal~e~i~~~IptP~rd 207 (415)
T COG5257 162 YEQIKEFVKGTVAENAPIIPISAQHKANIDALIEAIEKYIPTPERD 207 (415)
T ss_pred HHHHHHHHCCCCCCCCCEEEEHHHHCCCHHHHHHHHHHHCCCCCCC
T ss_conf 9999998626334799544325643058799999999868998667
No 309
>KOG1707 consensus
Probab=97.68 E-value=0.00028 Score=49.44 Aligned_cols=135 Identities=24% Similarity=0.309 Sum_probs=88.2
Q ss_pred HHCCCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCC-EEECCCCCCCCCEEEEEEECCHHCCCCHHHHHHHHHHHHHH
Q ss_conf 20230243114663188899998552000234546872-11000124568358999508100024103566667888998
Q gi|254780809|r 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT-RDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295 (440)
Q Consensus 217 ~~g~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTT-RD~i~~~~~i~g~~~~l~DTaGir~t~d~IE~~GI~ra~~~ 295 (440)
+.-+||+++|-.-+|||||+=+|+.++= |..+|--- |=.|-..+.=+.+|..++||.-- .++. ..-.++
T Consensus 7 ~kdVRIvliGD~G~GKtSLImSL~~eef--~~~VP~rl~~i~IPadvtPe~vpt~ivD~ss~--~~~~------~~l~~E 76 (625)
T KOG1707 7 LKDVRIVLIGDEGVGKTSLIMSLLEEEF--VDAVPRRLPRILIPADVTPENVPTSIVDTSSD--SDDR------LCLRKE 76 (625)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHC--CCCCCCCCCCCCCCCCCCCCCCCEEEEECCCC--CCHH------HHHHHH
T ss_conf 5525999977888668999999876335--45345557761158756767672188743666--4256------889999
Q ss_pred HHHHCCEEECCCCCCHH--------HHHHH-------CCCCCCCCCCCCCCCCCCCH--HH--------------HHHHH
Q ss_conf 50301102013589856--------63431-------28985322223334465420--00--------------00133
Q gi|254780809|r 296 VENADLILLLKEINSKK--------EISFP-------KNIDFIFIGTKSDLYSTYTE--EY--------------DHLIS 344 (440)
Q Consensus 296 i~~aDlil~v~D~~~~~--------~~~~~-------~~~~~i~V~NK~Dl~~~~~~--~~--------------~~~IS 344 (440)
+++||+|..+...+++. |+... -+.|+|+|.||+|+...... +. -+..|
T Consensus 77 irkA~vi~lvyavd~~~T~D~ist~WLPlir~~~~~~~~~PVILvGNK~d~~~~~~~s~e~~~~pim~~f~EiEtciecS 156 (625)
T KOG1707 77 IRKADVICLVYAVDDESTVDRISTKWLPLIRQLFGDYHETPVILVGNKSDNGDNENNSDEVNTLPIMIAFAEIETCIECS 156 (625)
T ss_pred HHHCCEEEEEEECCCHHHHHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 86458899998538768765444322365644157776687799830357755455641577789998757777887654
Q ss_pred HHHHHHHHHHHHHHHHH
Q ss_conf 33232358999999999
Q gi|254780809|r 345 SFTGEGLEELINKIKSI 361 (440)
Q Consensus 345 aktg~Gi~~L~~~I~~~ 361 (440)
|++-.++.++.-.=.+.
T Consensus 157 A~~~~n~~e~fYyaqKa 173 (625)
T KOG1707 157 ALTLANVSELFYYAQKA 173 (625)
T ss_pred HHHHHHHHHHHHHHHHE
T ss_conf 65441137765454420
No 310
>COG4108 PrfC Peptide chain release factor RF-3 [Translation, ribosomal structure and biogenesis]
Probab=97.65 E-value=0.00016 Score=51.07 Aligned_cols=105 Identities=23% Similarity=0.327 Sum_probs=73.8
Q ss_pred CCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCCE----------EECC----------C---CCCCCCEEEEEEECCH
Q ss_conf 302431146631888999985520002345468721----------1000----------1---2456835899950810
Q gi|254780809|r 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR----------DVLT----------I---DLDLEGYLVKISDTAG 276 (440)
Q Consensus 220 ~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTTR----------D~i~----------~---~~~i~g~~~~l~DTaG 276 (440)
-+-||+-.|.|||+||--.|+=.--|| ..|||.+ |+.+ . .+.++|..+.|+||||
T Consensus 13 RTFAIISHPDAGKTTlTEkLLlfGgaI--q~AGtVk~rk~~~~a~SDWM~iEkqRGISVtsSVMqF~Y~~~~iNLLDTPG 90 (528)
T COG4108 13 RTFAIISHPDAGKTTLTEKLLLFGGAI--QEAGTVKGRKSGKHAKSDWMEIEKQRGISVTSSVMQFDYADCLVNLLDTPG 90 (528)
T ss_pred CCEEEEECCCCCCCCHHHHHHHHCCHH--HHCCEEEECCCCCCCCCHHHHHHHHCCCEEEEEEEEEECCCEEEECCCCCC
T ss_conf 403688568888511889999723034--305501222577634227788887568558765787603884886147998
Q ss_pred HCC-CCHHHHHHHHHHHHHHHHHHCCEEECCCCCC---HHHH-----HHHCCCCCCCCCCCCCCCCCC
Q ss_conf 002-4103566667888998503011020135898---5663-----431289853222233344654
Q gi|254780809|r 277 IRE-TDDIVEKEGIKRTFLEVENADLILLLKEINS---KKEI-----SFPKNIDFIFIGTKSDLYSTY 335 (440)
Q Consensus 277 ir~-t~d~IE~~GI~ra~~~i~~aDlil~v~D~~~---~~~~-----~~~~~~~~i~V~NK~Dl~~~~ 335 (440)
--+ ++| ++..+.-+|--+.|+|+-. +... -.+.+.|++..+||.|.....
T Consensus 91 HeDFSED---------TYRtLtAvDsAvMVIDaAKGiE~qT~KLfeVcrlR~iPI~TFiNKlDR~~rd 149 (528)
T COG4108 91 HEDFSED---------TYRTLTAVDSAVMVIDAAKGIEPQTLKLFEVCRLRDIPIFTFINKLDREGRD 149 (528)
T ss_pred CCCCCHH---------HHHHHHHHHEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCC
T ss_conf 6543236---------7899986410468986035866889999999850598469975023656688
No 311
>PRK13796 GTP-binding protein YqeH; Provisional
Probab=97.65 E-value=5.3e-05 Score=54.48 Aligned_cols=72 Identities=24% Similarity=0.353 Sum_probs=51.3
Q ss_pred HHHHHHHHHH-CCEEECCCCCCHH------HHHHHCCCCCCCCCCCCCCCCCCCH-------------------HHHHHH
Q ss_conf 8889985030-1102013589856------6343128985322223334465420-------------------000013
Q gi|254780809|r 290 KRTFLEVENA-DLILLLKEINSKK------EISFPKNIDFIFIGTKSDLYSTYTE-------------------EYDHLI 343 (440)
Q Consensus 290 ~ra~~~i~~a-Dlil~v~D~~~~~------~~~~~~~~~~i~V~NK~Dl~~~~~~-------------------~~~~~I 343 (440)
.+.+..+... .+|++|+|..+-+ ...+..++|+++|.||+||.++... ...+.+
T Consensus 62 ~~~l~~i~~~~~lvv~VvDi~Df~gS~~~~l~~~ig~~~vilV~NKvDLLP~~~~~~~~~~wv~~~~~~~gl~~~dV~lv 141 (367)
T PRK13796 62 LRLLNGIGDSDALVVNVVDIFDFNGSWIPGLHRFVGNNPVLLVGNKADLLPKSVKKNKVKNWLRQEAKELGLRPVDVVLI 141 (367)
T ss_pred HHHHHHHCCCCCEEEEEEECCCCCCCHHHHHHHHHCCCCEEEEEECHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEE
T ss_conf 99998625367089999974457765135089871898489999823338876787899999999999759985528999
Q ss_pred HHHHHHHHHHHHHHHHHH
Q ss_conf 333232358999999999
Q gi|254780809|r 344 SSFTGEGLEELINKIKSI 361 (440)
Q Consensus 344 Saktg~Gi~~L~~~I~~~ 361 (440)
||++|.|+++|++.|.+.
T Consensus 142 Sak~g~gv~~L~~~i~~~ 159 (367)
T PRK13796 142 SAQKGQGIDELLDAIEKY 159 (367)
T ss_pred ECCCCCCHHHHHHHHHHH
T ss_conf 465788999999999986
No 312
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=97.64 E-value=0.00023 Score=50.08 Aligned_cols=118 Identities=22% Similarity=0.251 Sum_probs=67.5
Q ss_pred HCCCEEEECCCCCCHHHHHHHHHCCHH-----CCCCCCCC----------------------------------------
Q ss_conf 023024311466318889999855200-----02345468----------------------------------------
Q gi|254780809|r 218 NGYKIVILGHSNAGKSSLFNALAKKDV-----AIVTDIPG---------------------------------------- 252 (440)
Q Consensus 218 ~g~~v~i~G~pN~GKSSL~N~L~~~~~-----aIVs~~~G---------------------------------------- 252 (440)
+-+.++++|--.+||||++.+|+|-.- -++|..|=
T Consensus 25 ~LPqiVVvGdQSsGKSSvLEaitGi~FlPr~~g~cTR~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 104 (240)
T smart00053 25 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLILQLINSSTEYAEFLHCKGKKFTDFDEVRNEIEAETDRVT 104 (240)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEECCEEEEEEECCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHC
T ss_conf 89848998887875899999987887555689727644069997338865124774378634898999999999887532
Q ss_pred -----CCEEECCCCCCCCC-EEEEEEECCHHCCC--C---HHHHHHHHHHHHHHHHHHC-CEEECCCCCCH----HHHHH
Q ss_conf -----72110001245683-58999508100024--1---0356666788899850301-10201358985----66343
Q gi|254780809|r 253 -----TTRDVLTIDLDLEG-YLVKISDTAGIRET--D---DIVEKEGIKRTFLEVENAD-LILLLKEINSK----KEISF 316 (440)
Q Consensus 253 -----TTRD~i~~~~~i~g-~~~~l~DTaGir~t--~---d~IE~~GI~ra~~~i~~aD-lil~v~D~~~~----~~~~~ 316 (440)
-+.|++.-.+.-.. -..+|+|.||+-.. . ..++..--+...+++.... +||.|++++.. ..+..
T Consensus 105 g~~~~~s~~~l~lei~gP~~p~LTlvDLPGl~~~~~~~q~~~~~~~v~~lv~~Yi~~p~tIILaVv~a~~D~anq~~l~l 184 (240)
T smart00053 105 GTNKGISPVPINLRVYSPHVLNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALKL 184 (240)
T ss_pred CCCCCCCCCCEEEEEECCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHH
T ss_conf 67887678855999947999885441475412467899856799999999999847988069998407856766199999
Q ss_pred -----HCCCCCCCCCCCCCCCCCC
Q ss_conf -----1289853222233344654
Q gi|254780809|r 317 -----PKNIDFIFIGTKSDLYSTY 335 (440)
Q Consensus 317 -----~~~~~~i~V~NK~Dl~~~~ 335 (440)
+.+...+-|++|.|+..+-
T Consensus 185 Ar~~Dp~g~RTiGVlTKpDl~~~g 208 (240)
T smart00053 185 AKEVDPQGERTIGVITKLDLMDEG 208 (240)
T ss_pred HHHHCCCCCEEEEEECCCCCCCCC
T ss_conf 997199998289997353345777
No 313
>COG2895 CysN GTPases - Sulfate adenylate transferase subunit 1 [Inorganic ion transport and metabolism]
Probab=97.63 E-value=6.3e-05 Score=53.95 Aligned_cols=127 Identities=25% Similarity=0.261 Sum_probs=81.8
Q ss_pred HHCCCEEEECCCCCCHHHHHHHHHCCHHCCC----------CCCCCCC----------------------EEECCCCCCC
Q ss_conf 2023024311466318889999855200023----------4546872----------------------1100012456
Q gi|254780809|r 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIV----------TDIPGTT----------------------RDVLTIDLDL 264 (440)
Q Consensus 217 ~~g~~v~i~G~pN~GKSSL~N~L~~~~~aIV----------s~~~GTT----------------------RD~i~~~~~i 264 (440)
++-.|..-+|-..-|||||+-+|+-.-++|- |...||+ -|+-...+.-
T Consensus 4 k~lLRfiTcGSVDDGKSTLIGRLL~Dtk~i~eDQla~l~~dS~~~~t~g~~~D~ALLvDGL~AEREQGITIDVAYRyFsT 83 (431)
T COG2895 4 KSLLRFITCGSVDDGKSTLIGRLLYDTKAIYEDQLASLERDSKRKGTQGEKIDLALLVDGLEAEREQGITIDVAYRYFST 83 (431)
T ss_pred CCCEEEEEECCCCCCCHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEEEECCC
T ss_conf 54136897535368602324465531011057799987521312367787545256332568888649659987641036
Q ss_pred CCEEEEEEECCHHCC-CCHHHHHHHHHHHHHHHHHHCCEEECCCCCCHH--------HHHHHCCC-CCCCCCCCCCCCCC
Q ss_conf 835899950810002-410356666788899850301102013589856--------63431289-85322223334465
Q gi|254780809|r 265 EGYLVKISDTAGIRE-TDDIVEKEGIKRTFLEVENADLILLLKEINSKK--------EISFPKNI-DFIFIGTKSDLYST 334 (440)
Q Consensus 265 ~g~~~~l~DTaGir~-t~d~IE~~GI~ra~~~i~~aDlil~v~D~~~~~--------~~~~~~~~-~~i~V~NK~Dl~~~ 334 (440)
...+|.+.||||--+ |.|- .--+..||+.++++|+...- .+..+-+. .+++..||+||...
T Consensus 84 ~KRkFIiADTPGHeQYTRNM---------aTGASTadlAIlLVDAR~Gvl~QTrRHs~I~sLLGIrhvvvAVNKmDLvdy 154 (431)
T COG2895 84 EKRKFIIADTPGHEQYTRNM---------ATGASTADLAILLVDARKGVLEQTRRHSFIASLLGIRHVVVAVNKMDLVDY 154 (431)
T ss_pred CCCEEEEECCCCHHHHHHHH---------HCCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHCCCEEEEEEEEECCCCC
T ss_conf 66308984599679876422---------236230037999996422167776778999997287679999741012356
Q ss_pred CCHHH--------------------HHHHHHHHHHHHH
Q ss_conf 42000--------------------0013333232358
Q gi|254780809|r 335 YTEEY--------------------DHLISSFTGEGLE 352 (440)
Q Consensus 335 ~~~~~--------------------~~~ISaktg~Gi~ 352 (440)
....+ .+.+||..|+++-
T Consensus 155 ~e~~F~~I~~dy~~fa~~L~~~~~~~IPiSAl~GDNV~ 192 (431)
T COG2895 155 SEEVFEAIVADYLAFAAQLGLKDVRFIPISALLGDNVV 192 (431)
T ss_pred CHHHHHHHHHHHHHHHHHCCCCCCEEEECHHHCCCCCC
T ss_conf 78999999999999999769985247743230487533
No 314
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.62 E-value=0.00063 Score=47.04 Aligned_cols=114 Identities=25% Similarity=0.292 Sum_probs=56.0
Q ss_pred HHCCCEEEECCCCCCHHHHHHHHHC-------C-HHCCCCCCCCCCE----EECCCCC---------------------C
Q ss_conf 2023024311466318889999855-------2-0002345468721----1000124---------------------5
Q gi|254780809|r 217 RNGYKIVILGHSNAGKSSLFNALAK-------K-DVAIVTDIPGTTR----DVLTIDL---------------------D 263 (440)
Q Consensus 217 ~~g~~v~i~G~pN~GKSSL~N~L~~-------~-~~aIVs~~~GTTR----D~i~~~~---------------------~ 263 (440)
..+-.|+++|||-|||+|.+=.|.. + +.+++|- -|=| +.+..+- .
T Consensus 208 ~~~~vvalVGPTGVGKTTTiAKLAA~~~l~~~~~kV~lIT~--DtyRigA~eQLk~Ya~ilgvp~~v~~~~~~l~~al~~ 285 (412)
T PRK05703 208 EQGGVVALVGPTGVGKTTTLAKLAARYALEEGKDKVALITL--DTYRIGAVEQLKTYAKIMGIPVKVAYDPKELAKALEQ 285 (412)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEE--CCCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHH
T ss_conf 56736999888887567699999999999729981799983--7677779999999999719737984799999999987
Q ss_pred CCCEEEEEEECCHHCCCCH--HHHHHHHHHHHHHHHHHCCEEECCCCCCH-HHHH----HHCCC-CCCCCCCCCCCCCCC
Q ss_conf 6835899950810002410--35666678889985030110201358985-6634----31289-853222233344654
Q gi|254780809|r 264 LEGYLVKISDTAGIRETDD--IVEKEGIKRTFLEVENADLILLLKEINSK-KEIS----FPKNI-DFIFIGTKSDLYSTY 335 (440)
Q Consensus 264 i~g~~~~l~DTaGir~t~d--~IE~~GI~ra~~~i~~aDlil~v~D~~~~-~~~~----~~~~~-~~i~V~NK~Dl~~~~ 335 (440)
+.+..+.|+||||.-. .| .++++ +.-+......+ +++|+.++.+ .++. ..... ..=++++|.|-....
T Consensus 286 ~~~~dlILIDTaG~s~-~d~~~~~eL--~~~~~~~~~~~-~~LVlsat~~~~dl~~i~~~f~~~~~~~lI~TKlDEt~~~ 361 (412)
T PRK05703 286 LANCDLILIDTAGRSQ-RDPRLISEL--KALIENSKPID-VYLVLSATTKYRDLKDIVKHFSRLPLDGLILTKLDETSSL 361 (412)
T ss_pred HCCCCEEEEECCCCCC-CCHHHHHHH--HHHHHHCCCCC-EEEEECCCCCHHHHHHHHHHHCCCCCCEEEEEEECCCCCC
T ss_conf 1589979996898897-899999999--99986248871-8999759899899999999846799987999711289986
Q ss_pred C
Q ss_conf 2
Q gi|254780809|r 336 T 336 (440)
Q Consensus 336 ~ 336 (440)
.
T Consensus 362 G 362 (412)
T PRK05703 362 G 362 (412)
T ss_pred C
T ss_conf 2
No 315
>COG0480 FusA Translation elongation factors (GTPases) [Translation, ribosomal structure and biogenesis]
Probab=97.62 E-value=0.00016 Score=51.21 Aligned_cols=105 Identities=21% Similarity=0.190 Sum_probs=69.4
Q ss_pred CEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCCE------EECCC-------------CCCCCC-EEEEEEECCHHCCC
Q ss_conf 02431146631888999985520002345468721------10001-------------245683-58999508100024
Q gi|254780809|r 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR------DVLTI-------------DLDLEG-YLVKISDTAGIRET 280 (440)
Q Consensus 221 ~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTTR------D~i~~-------------~~~i~g-~~~~l~DTaGir~t 280 (440)
.|.|++.--+||+||.-+|+-.--.| +. +|.++ |+.+. ++.|+| +.+.|+||||-=+-
T Consensus 12 NigI~aHidaGKTTltE~lL~~tG~i-~k-~G~v~~g~~~~D~~e~EqeRGITI~saa~s~~~~~~~~iNlIDTPGHVDF 89 (697)
T COG0480 12 NIGIVAHIDAGKTTLTERILFYTGII-SK-IGEVHDGAATMDWMEQEQERGITITSAATTLFWKGDYRINLIDTPGHVDF 89 (697)
T ss_pred EEEEEECCCCCCHHHHHHHHHHCCCC-CC-CCCCCCCCCCCCCCHHHHHCCCEEEEEEEEEEECCCEEEEEECCCCCCCC
T ss_conf 79999604788077889999875975-77-85566786547887889866977864056899708658999579973534
Q ss_pred CHHHHHHHHHHHHHHHHHHCCEEECCCCCCH-------HHH-HHHCCCCCCCCCCCCCCCCCC
Q ss_conf 1035666678889985030110201358985-------663-431289853222233344654
Q gi|254780809|r 281 DDIVEKEGIKRTFLEVENADLILLLKEINSK-------KEI-SFPKNIDFIFIGTKSDLYSTY 335 (440)
Q Consensus 281 ~d~IE~~GI~ra~~~i~~aDlil~v~D~~~~-------~~~-~~~~~~~~i~V~NK~Dl~~~~ 335 (440)
..++ +|++.. +|-.+.|+|+... -|. ....+.|.++++||+|.....
T Consensus 90 t~EV-----~rslrv---lDgavvVvdaveGV~~QTEtv~rqa~~~~vp~i~fiNKmDR~~a~ 144 (697)
T COG0480 90 TIEV-----ERSLRV---LDGAVVVVDAVEGVEPQTETVWRQADKYGVPRILFVNKMDRLGAD 144 (697)
T ss_pred HHHH-----HHHHHH---HCCEEEEEECCCCEEECHHHHHHHHHHCCCCEEEEEECCCCCCCC
T ss_conf 7787-----998886---165099998878830037999999865599759999784335567
No 316
>PRK09866 hypothetical protein; Provisional
Probab=97.60 E-value=0.00014 Score=51.54 Aligned_cols=63 Identities=17% Similarity=0.205 Sum_probs=39.9
Q ss_pred EEEEEECCHHCCCCH-HHHHHHHHHHHHHHHHHCCEEECCCCCCHH---------HHH-HHCCCCCCCCCCCCCCCCC
Q ss_conf 899950810002410-356666788899850301102013589856---------634-3128985322223334465
Q gi|254780809|r 268 LVKISDTAGIRETDD-IVEKEGIKRTFLEVENADLILLLKEINSKK---------EIS-FPKNIDFIFIGTKSDLYST 334 (440)
Q Consensus 268 ~~~l~DTaGir~t~d-~IE~~GI~ra~~~i~~aDlil~v~D~~~~~---------~~~-~~~~~~~i~V~NK~Dl~~~ 334 (440)
..+|+||||=.|+.. ..++ .-.+.+..|..||.|.|-+.-+ .+. .-+..+..+..||-|-...
T Consensus 231 ~L~llDTPGPNEAGq~~l~~----m~~eQL~raSaVLaVmDyTQl~s~ad~evr~~l~ai~~~~~l~~lvnkfdq~dr 304 (742)
T PRK09866 231 QLTLLDTPGPNEAGQPHLQK----MLNQQLARASAVLAVLDYTQLKSISDEEVREAILAVGQSVPLYVLVNKFDQQDR 304 (742)
T ss_pred CEEEECCCCCCCCCCHHHHH----HHHHHHHHHCCHHEEECHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 15873599997335577999----999999861421102116754420069999999998610059999865400034
No 317
>TIGR03597 GTPase_YqeH ribosome biogenesis GTPase YqeH. This family describes YqeH, a member of a larger family of GTPases involved in ribosome biogenesis. Like YqlF, it shows a cyclical permutation relative to GTPases EngA (in which the GTPase domain is duplicated), Era, and others. Members of this protein family are found in a relatively small number of bacterial species, including Bacillus subtilis but not Escherichia coli.
Probab=97.59 E-value=7.2e-05 Score=53.59 Aligned_cols=73 Identities=23% Similarity=0.319 Sum_probs=52.2
Q ss_pred HHHHHHH-HHHCCEEECCCCCCHH------HHHHHCCCCCCCCCCCCCCCCCCCH-------------------HHHHHH
Q ss_conf 8889985-0301102013589856------6343128985322223334465420-------------------000013
Q gi|254780809|r 290 KRTFLEV-ENADLILLLKEINSKK------EISFPKNIDFIFIGTKSDLYSTYTE-------------------EYDHLI 343 (440)
Q Consensus 290 ~ra~~~i-~~aDlil~v~D~~~~~------~~~~~~~~~~i~V~NK~Dl~~~~~~-------------------~~~~~I 343 (440)
.+.+..+ ....+|++|+|..+-+ ......++|+++|.||+||.++... ...+.+
T Consensus 54 ~~~l~~i~~~~~lVv~VvDi~Df~gS~~~~l~~~~~~~~v~lV~NK~DLLP~~~~~~~i~~wv~~~~~~~gl~~~~V~lv 133 (360)
T TIGR03597 54 LNLLNSLGDSNALIVYVVDIFDFEGSLIPELKRFVGGNPVLLVGNKIDLLPKSVNLSKIKEWMKKRAKELGLKPVDIILV 133 (360)
T ss_pred HHHHHHHCCCCCEEEEEEECCCCCCCHHHHHHHHHCCCCEEEEEEHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCEEEE
T ss_conf 99998742368379999864147765346499983898589999805428876787999999999999859983668999
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q ss_conf 3332323589999999996
Q gi|254780809|r 344 SSFTGEGLEELINKIKSIL 362 (440)
Q Consensus 344 Saktg~Gi~~L~~~I~~~l 362 (440)
||++|.|+++|++.|.+.-
T Consensus 134 Sa~~g~gi~~l~~~i~~~~ 152 (360)
T TIGR03597 134 SAKKGNGIDELLDKIKKAR 152 (360)
T ss_pred ECCCCCCHHHHHHHHHHHH
T ss_conf 6888989999999999871
No 318
>TIGR00483 EF-1_alpha translation elongation factor EF-1, subunit alpha; InterPro: IPR004539 Translation elongation factors are responsible for two main processes during protein synthesis on the ribosome , , . EF1A (or EF-Tu) is responsible for the selection and binding of the cognate aminoacyl-tRNA to the A-site (acceptor site) of the ribosome. EF2 (or EF-G) is responsible for the translocation of the peptidyl-tRNA from the A-site to the P-site (peptidyl-tRNA site) of the ribosome, thereby freeing the A-site for the next aminoacyl-tRNA to bind. Elongation factors are responsible for achieving accuracy of translation and both EF1A and EF2 are remarkably conserved throughout evolution. EF1A (also known as EF-1alpha or EF-Tu) is a G-protein. It forms a ternary complex of EF1A-GTP-aminoacyltRNA. The binding of aminoacyl-tRNA stimulates GTP hydrolysis by EF1A, causing a conformational change in EF1A that causes EF1A-GDP to detach from the ribosome, leaving the aminoacyl-tRNA attached at the A-site. Only the cognate aminoacyl-tRNA can induce the required conformational change in EF1A through its tight anticodon-codon binding , . EF1A-GDP is returned to its active state, EF1A-GTP, through the action of another elongation factor, EF1B (also known as EF-Ts or EF-1beta/gamma/delta). This entry represents EF1A proteins found primarily in eukaryotic (eEF1A) and archaeal (aEF1A) organisms, these proteins being more closely related to one another than to EF1A (or EF-Tu) found in bacteria (IPR004541 from INTERPRO). More information about these proteins can be found at Protein of the Month: Elongation Factors . ; GO: 0003746 translation elongation factor activity, 0005525 GTP binding, 0006414 translational elongation, 0005737 cytoplasm.
Probab=97.58 E-value=5.7e-05 Score=54.29 Aligned_cols=115 Identities=28% Similarity=0.344 Sum_probs=80.5
Q ss_pred HHCCCEEEECCCCCCHHHHHHHHHCCHHCC------------------------C------CCCCCCCEEECCCCCCCCC
Q ss_conf 202302431146631888999985520002------------------------3------4546872110001245683
Q gi|254780809|r 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAI------------------------V------TDIPGTTRDVLTIDLDLEG 266 (440)
Q Consensus 217 ~~g~~v~i~G~pN~GKSSL~N~L~~~~~aI------------------------V------s~~~GTTRD~i~~~~~i~g 266 (440)
++-+.|+++|....||||+.-+|+=+-=+| | -..-|-|-|+-...++-..
T Consensus 5 K~~~Nv~~IGHVD~GKST~~G~Lly~~G~I~~~~~eK~~kEa~e~GK~~F~fa~V~D~Lk~ERERGvTID~A~~KFeT~K 84 (445)
T TIGR00483 5 KEHINVAFIGHVDHGKSTLVGRLLYKAGAIDEQLLEKLKKEAQEKGKASFEFAWVMDRLKEERERGVTIDVAHKKFETDK 84 (445)
T ss_pred CCEEEEEEEEEEECCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCCCCHHHHHHHHCCCCC
T ss_conf 43244899825408850266777754289658999999875755187303676543110000015622433445417885
Q ss_pred EEEEEEECCHHCCCCHHHHHHHHHHHHHHHHHHCCEEECCCCCCHHHH------------HHH---CC-CCCCCCCCCCC
Q ss_conf 589995081000241035666678889985030110201358985663------------431---28-98532222333
Q gi|254780809|r 267 YLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEI------------SFP---KN-IDFIFIGTKSD 330 (440)
Q Consensus 267 ~~~~l~DTaGir~t~d~IE~~GI~ra~~~i~~aDlil~v~D~~~~~~~------------~~~---~~-~~~i~V~NK~D 330 (440)
+.++++|.||=|+- |+.-+-=..+||.-++|+|..+...- .++ -+ ..+|+.+||+|
T Consensus 85 Y~~TivDcPGHRDF--------iKNMITGaSQADaAvLv~~v~~~~~~ag~~~~pQTrEH~~La~TLGi~QliVAiNKMD 156 (445)
T TIGR00483 85 YEVTIVDCPGHRDF--------IKNMITGASQADAAVLVVAVDDGEFEAGISVQPQTREHVFLARTLGINQLIVAINKMD 156 (445)
T ss_pred EEEEEEECCCCCHH--------HHHCCCCCCCCCEEEEEEECCCCCCCCCEEECCCCHHHHHHHHHHCCEEEEEEECCCC
T ss_conf 16999846987013--------4311266751242799995254410240121786057788877503204533310246
Q ss_pred CCCCCCHHH
Q ss_conf 446542000
Q gi|254780809|r 331 LYSTYTEEY 339 (440)
Q Consensus 331 l~~~~~~~~ 339 (440)
..+.....+
T Consensus 157 ~V~yd~~~f 165 (445)
T TIGR00483 157 SVNYDEEEF 165 (445)
T ss_pred CEECCHHHH
T ss_conf 100277899
No 319
>TIGR00073 hypB hydrogenase accessory protein HypB; InterPro: IPR004392 The hydrogenase accessory protein HypB is a GTP hydrolase for assembly of nickel metallocentre of hydrogenase. A similar protein, ureG, is an accessory protein for urease, which also uses nickel.; GO: 0016151 nickel ion binding, 0006461 protein complex assembly.
Probab=97.58 E-value=8.7e-05 Score=53.01 Aligned_cols=148 Identities=18% Similarity=0.212 Sum_probs=88.9
Q ss_pred HHHHHHHHHHHCC-CEEEECCCCCCHHHHHHHHHCCHH------CCCCCCCCCCEEECCCCCCCCCEEEEEEECCHHCCC
Q ss_conf 3223455432023-024311466318889999855200------023454687211000124568358999508100024
Q gi|254780809|r 208 SQGKLGEIIRNGY-KIVILGHSNAGKSSLFNALAKKDV------AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 (440)
Q Consensus 208 ~~~~~~~~l~~g~-~v~i~G~pN~GKSSL~N~L~~~~~------aIVs~~~GTTRD~i~~~~~i~g~~~~l~DTaGir~t 280 (440)
..-++.+..+.|. -+=+.|-|-+||++|+-.++..-. .|+.|.. |-+|. .++.-.|.++.=+-|- -
T Consensus 22 A~~Nr~~~~~~g~~~lNfmsspGSGKT~LiEk~~~~~~~~~K~Avi~GD~~-t~~DA--~RlR~~G~~a~~~nTG----k 94 (225)
T TIGR00073 22 AEKNRERFDKEGLLVLNFMSSPGSGKTTLIEKLIERLDDEVKIAVIEGDVQ-TKNDA--DRLRKYGVPAIQINTG----K 94 (225)
T ss_pred HHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCCEEEEECCHH-HHHHH--HHHHHCCCEEEEECCC----C
T ss_conf 999999998659789980258861158999999998457897899975532-25569--9998649868863688----6
Q ss_pred CHHHHHHHHH---HHHHHHH--HH-CCEEE------CCCCC----CHHH---------HHHHCCCC------CCCCCCCC
Q ss_conf 1035666678---8899850--30-11020------13589----8566---------34312898------53222233
Q gi|254780809|r 281 DDIVEKEGIK---RTFLEVE--NA-DLILL------LKEIN----SKKE---------ISFPKNID------FIFIGTKS 329 (440)
Q Consensus 281 ~d~IE~~GI~---ra~~~i~--~a-Dlil~------v~D~~----~~~~---------~~~~~~~~------~i~V~NK~ 329 (440)
.-..|+.-|. .+++... +. |+++. |..++ ...- -+.+.+-| -++|+||.
T Consensus 95 ~CHLdA~mv~G~~~~L~~~~ld~~~DlL~IENVGNLvCP~~FdLGe~~rVvllSVTEGdDk~lKyP~~F~~Ad~~~inK~ 174 (225)
T TIGR00073 95 ECHLDAHMVAGAIHALKDLPLDDISDLLLIENVGNLVCPADFDLGEHMRVVLLSVTEGDDKVLKYPAMFKEADLILINKV 174 (225)
T ss_pred CCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCCEECCCCCCCCCCEEEEEEECCCCCCCCCCCHHHHHHHHHHHCHH
T ss_conf 44401667865875542168887146268864476100673112356307999865899965466158874445621478
Q ss_pred CCCCCCC---------------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 3446542---------------00000133332323589999999996
Q gi|254780809|r 330 DLYSTYT---------------EEYDHLISSFTGEGLEELINKIKSIL 362 (440)
Q Consensus 330 Dl~~~~~---------------~~~~~~ISaktg~Gi~~L~~~I~~~l 362 (440)
||.+... .-..+.+|+|||+|++++++.|.+..
T Consensus 175 DL~~~v~~D~ek~~~d~~~~nP~a~Ii~~S~ktg~Gl~~w~~~l~~~~ 222 (225)
T TIGR00073 175 DLAEAVGFDVEKMKADARKINPEAEIILVSAKTGKGLDEWLEFLEGKK 222 (225)
T ss_pred HHHHHHCCCHHHHHHHHHHHCCCEEEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 899770736789999998628950799863689734789999999864
No 320
>KOG0447 consensus
Probab=97.57 E-value=0.009 Score=39.00 Aligned_cols=113 Identities=26% Similarity=0.354 Sum_probs=67.8
Q ss_pred CCCEEEECCCCCCHHHHHHHHHCCH-----------HCC--CC--C----------------------------------
Q ss_conf 2302431146631888999985520-----------002--34--5----------------------------------
Q gi|254780809|r 219 GYKIVILGHSNAGKSSLFNALAKKD-----------VAI--VT--D---------------------------------- 249 (440)
Q Consensus 219 g~~v~i~G~pN~GKSSL~N~L~~~~-----------~aI--Vs--~---------------------------------- 249 (440)
-++|+++|--.+||.|.+-.+.+.. ||= |+ +
T Consensus 308 LPRVVVVGDQSaGKTSVLEmiAqARIFPRGSGEMMTRaPVKVTLsEGPyHVAqFrDSsREfDLTKE~DLq~LR~e~E~RM 387 (980)
T KOG0447 308 LPRVVVVGDQSAGKTSVLEMIAQARIFPRGSGEMMTRSPVKVTLSEGPHHVALFKDSSREFDLTKEEDLAALRHEIELRM 387 (980)
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHCCCCCCCCCEECCCCEEEEECCCCCHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHH
T ss_conf 86279975666662289999987430768885310037747881468603454246542246541557999988888998
Q ss_pred ----CCCCCEEECCCCCCCCC--E-EEEEEECCHH---------CCCCHHHHHHHHHHHHHHHHHHC-CEEECCCCCCHH
Q ss_conf ----46872110001245683--5-8999508100---------02410356666788899850301-102013589856
Q gi|254780809|r 250 ----IPGTTRDVLTIDLDLEG--Y-LVKISDTAGI---------RETDDIVEKEGIKRTFLEVENAD-LILLLKEINSKK 312 (440)
Q Consensus 250 ----~~GTTRD~i~~~~~i~g--~-~~~l~DTaGi---------r~t~d~IE~~GI~ra~~~i~~aD-lil~v~D~~~~~ 312 (440)
..|.|--.-...++..| . ...|+|.||+ ++|+|.|-+ .++..++..+ +||.+-|++-..
T Consensus 388 r~sVr~GkTVSnEvIsltVKGPgLqRMVLVDLPGvIsTvT~dMA~dTKd~I~~----msKayM~NPNAIILCIQDGSVDA 463 (980)
T KOG0447 388 RKNVKEGCTVSPETISLNVKGPGLQRMVLVDLPGVINTVTSGMAPDTKETIFS----ISKAYMQNPNAIILCIQDGSVDA 463 (980)
T ss_pred HHCCCCCCCCCCCEEEEEECCCCCCEEEEECCCCHHHHHCCCCCCCCHHHHHH----HHHHHHCCCCEEEEEECCCCCCH
T ss_conf 85035785145121689721899623688637732544002346431677999----99997459983899951687305
Q ss_pred HH---------HHHCCCCCCCCCCCCCCCCCC
Q ss_conf 63---------431289853222233344654
Q gi|254780809|r 313 EI---------SFPKNIDFIFIGTKSDLYSTY 335 (440)
Q Consensus 313 ~~---------~~~~~~~~i~V~NK~Dl~~~~ 335 (440)
+. -.+.+...|+|++|.|+..+.
T Consensus 464 ERSnVTDLVsq~DP~GrRTIfVLTKVDlAEkn 495 (980)
T KOG0447 464 ERSIVTDLVSQMDPHGRRTIFVLTKVDLAEKN 495 (980)
T ss_pred HHHHHHHHHHHCCCCCCEEEEEEEECCHHHHC
T ss_conf 55138889871387787369998511156440
No 321
>PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=97.55 E-value=0.00013 Score=51.81 Aligned_cols=129 Identities=17% Similarity=0.221 Sum_probs=74.3
Q ss_pred HHHCCCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCCEEECCCCCCCCCEEEEEEECCHHCCCCHHHHHHHHHHHHHH
Q ss_conf 32023024311466318889999855200023454687211000124568358999508100024103566667888998
Q gi|254780809|r 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295 (440)
Q Consensus 216 l~~g~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTTRD~i~~~~~i~g~~~~l~DTaGir~t~d~IE~~GI~ra~~~ 295 (440)
++.|-+|+|+|+.-+|||||+|.|+|.. |. ++.+.++|.++.-+|..-+|+.-.-|.+
T Consensus 373 i~~Ge~vaIVG~SGsGKSTl~~LL~g~~-----p~--------~G~I~i~g~di~~i~~~~lr~~i~~V~Q--------- 430 (588)
T PRK11174 373 LPAGQRVALVGPSGAGKTSLLNALLGFL-----PY--------QGSLKINGIELRELDPESWRKHLSWVGQ--------- 430 (588)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHHHHC-----CC--------CCEEEECCEECCCCCHHHHHHHEEEECC---------
T ss_conf 7499789998999864999999998728-----98--------8389999986030899999966035166---------
Q ss_pred HHHHCCEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEH
Q ss_conf 50301102013589856634312898532222333446542000001333323235899999999963220358863201
Q gi|254780809|r 296 VENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPS 375 (440)
Q Consensus 296 i~~aDlil~v~D~~~~~~~~~~~~~~~i~V~NK~Dl~~~~~~~~~~~ISaktg~Gi~~L~~~I~~~l~~~~~~~~~~i~~ 375 (440)
| -++++.+=.+.+.+ . +.|... .-...|....|++++++.+.+-+.....+....+.-
T Consensus 431 ----~--~~LF~~TI~eNI~~---------g-~~~atd------eei~~A~~~a~~~~~I~~Lp~GldT~vge~G~~LSG 488 (588)
T PRK11174 431 ----N--PQLFHGTLRDNVLL---------A-NPDASD------EQLQQALENAWVSEFVPLLPQGLDTPIGDQAAGLSV 488 (588)
T ss_pred ----C--CCCCCCCHHHHHHC---------C-CCCCCH------HHHHHHHHHHHHHHHHHHCCCCCCCHHCCCCCCCCH
T ss_conf ----6--77776629986533---------5-854334------579999998624789984513223632288887799
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 4899999999999
Q gi|254780809|r 376 HKRHLYHLSQTVR 388 (440)
Q Consensus 376 ~~Rq~~~L~~a~~ 388 (440)
-+||+-++.+++-
T Consensus 489 GQrQRiaiARAll 501 (588)
T PRK11174 489 GQAQRLALARALL 501 (588)
T ss_pred HHHHHHHHHHHHH
T ss_conf 9999999999983
No 322
>KOG4252 consensus
Probab=97.54 E-value=4.6e-05 Score=54.93 Aligned_cols=103 Identities=26% Similarity=0.332 Sum_probs=64.9
Q ss_pred CCCEEEECCCCCCHHHHHHHHHC------CHHCCCCCCCCCCEEECCCC--CCCCCEEEEEEECCHHCCCCHHHHHHHHH
Q ss_conf 23024311466318889999855------20002345468721100012--45683589995081000241035666678
Q gi|254780809|r 219 GYKIVILGHSNAGKSSLFNALAK------KDVAIVTDIPGTTRDVLTID--LDLEGYLVKISDTAGIRETDDIVEKEGIK 290 (440)
Q Consensus 219 g~~v~i~G~pN~GKSSL~N~L~~------~~~aIVs~~~GTTRD~i~~~--~~i~g~~~~l~DTaGir~t~d~IE~~GI~ 290 (440)
-++++|+|---|||||++.+.++ .+..|= -|.++.. +.+..+...+.||||-.| -|. |.
T Consensus 20 aiK~vivGng~VGKssmiqryCkgifTkdykktIg-------vdflerqi~v~~Edvr~mlWdtagqeE-fDa-----It 86 (246)
T KOG4252 20 AIKFVIVGNGSVGKSSMIQRYCKGIFTKDYKKTIG-------VDFLERQIKVLIEDVRSMLWDTAGQEE-FDA-----IT 86 (246)
T ss_pred HEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCC-------HHHHHHHHHHHHHHHHHHHHHHCCCHH-HHH-----HH
T ss_conf 37899987886246899999852445566540003-------235267777408999999987223166-778-----99
Q ss_pred HHHHHHHHHCCEEECCCCCCHHHHH-----------HHCCCCCCCCCCCCCCCCCCC
Q ss_conf 8899850301102013589856634-----------312898532222333446542
Q gi|254780809|r 291 RTFLEVENADLILLLKEINSKKEIS-----------FPKNIDFIFIGTKSDLYSTYT 336 (440)
Q Consensus 291 ra~~~i~~aDlil~v~D~~~~~~~~-----------~~~~~~~i~V~NK~Dl~~~~~ 336 (440)
+|+-.-.+|.+ +|+.-++....+ ..+.+|.++|.||+||.....
T Consensus 87 kAyyrgaqa~v--LVFSTTDr~SFea~~~w~~kv~~e~~~IPtV~vqNKIDlveds~ 141 (246)
T KOG4252 87 KAYYRGAQASV--LVFSTTDRYSFEATLEWYNKVQKETERIPTVFVQNKIDLVEDSQ 141 (246)
T ss_pred HHHHCCCCCEE--EEEECCCHHHHHHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHH
T ss_conf 98742564048--99854517778999999999998755687587642200567652
No 323
>TIGR00487 IF-2 translation initiation factor IF-2; InterPro: IPR000178 Initiation factor 2 (IF-2) (gene infB) is one of the three factors required for the initiation of protein biosynthesis in bacteria. IF-2 promotes the GTP-dependent binding of the initiator tRNA to the small subunit of the ribosome. IF-2 is a protein of about 70 to 95 Kd which contains a central GTP-binding domain flanked by a highly variable N-terminal domain and a more conserved C-terminal domain. Bacterial IF-2 is structurally and functionally related to eukaryotic mitochondrial IF-2 (IF-2(mt)) as well as to algal and plants chloroplast IF-2 (IF-2(chl)). Both IF-2(mt) and IF-2(chl) are encoded by nuclear genes and are produced as precursor proteins with a transit peptide. An exception are red algae where IF-2(chl) is encoded by the plastid genome .; GO: 0003743 translation initiation factor activity, 0005525 GTP binding, 0006413 translational initiation, 0005622 intracellular.
Probab=97.54 E-value=0.0002 Score=50.49 Aligned_cols=139 Identities=22% Similarity=0.325 Sum_probs=94.6
Q ss_pred HHHHHCCCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCCEEECCCCCCCCCE--EEEEEECCHHCCCCHHHHHHHHHH
Q ss_conf 543202302431146631888999985520002345468721100012456835--899950810002410356666788
Q gi|254780809|r 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY--LVKISDTAGIRETDDIVEKEGIKR 291 (440)
Q Consensus 214 ~~l~~g~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTTRD~i~~~~~i~g~--~~~l~DTaGir~t~d~IE~~GI~r 291 (440)
......+.+.+.|...-||++|+..+-..+.+ -++..|.|..+-...+..+.. .+.++||||-..- -.-
T Consensus 85 ~~~~~pp~~~~~gh~dhg~~~ll~~~~~~~~~-~~~~gg~~~~~g~y~~~~~~~~~~~~f~d~pgh~~f-------~~~- 155 (594)
T TIGR00487 85 LLVPRPPVVTIMGHVDHGKTSLLDSIRKTKVA-AGEAGGITQHIGAYHVEKEDGKKWITFLDTPGHEAF-------TLM- 155 (594)
T ss_pred HHHCCCCEEEEEECCCCCCHHHHHHHHHCCCC-CCCCCCCHHHCCEEEEEECCCCEEEEEECCCCHHHH-------HHH-
T ss_conf 11024763688512355403456555410000-111365201013045664288437998407753677-------877-
Q ss_pred HHHHHHHHCCEEECCCCCC---HHHHH-----HHCCCCCCCCCCCCCCCCCCCHHH-------------------HHHHH
Q ss_conf 8998503011020135898---56634-----312898532222333446542000-------------------00133
Q gi|254780809|r 292 TFLEVENADLILLLKEINS---KKEIS-----FPKNIDFIFIGTKSDLYSTYTEEY-------------------DHLIS 344 (440)
Q Consensus 292 a~~~i~~aDlil~v~D~~~---~~~~~-----~~~~~~~i~V~NK~Dl~~~~~~~~-------------------~~~IS 344 (440)
--.-.+-.|++++++-+.+ +.... ...+.|+++..||.|.....++.. .+.+|
T Consensus 156 ~~~g~~~~d~~~~~~~~~dg~~~~~~~~~~h~~~~~~p~~~~~n~~d~p~~~pd~~~~~~~~~g~~~~~wgg~~~~~~~~ 235 (594)
T TIGR00487 156 RARGAKVTDIVVLVVAADDGVKPQTIEAISHAKAANVPLIVAVNKIDKPEANPDRVKQELSEYGLVPEDWGGDTIFVPVS 235 (594)
T ss_pred HHCCCCEEEEEEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEECCCCCCCCHHHHHHHHHHCCCCCHHCCCCEEEEEEE
T ss_conf 63376100157999841556423568876533330773699861246766787789999875177501127834688620
Q ss_pred HHHHHHHHHHHHHHHHH
Q ss_conf 33232358999999999
Q gi|254780809|r 345 SFTGEGLEELINKIKSI 361 (440)
Q Consensus 345 aktg~Gi~~L~~~I~~~ 361 (440)
+++|.|++.|++.+.-.
T Consensus 236 ~~~g~g~~~l~~~~l~~ 252 (594)
T TIGR00487 236 ALTGDGIDELLDAILLQ 252 (594)
T ss_pred CCCCCCHHHHHHHHHHH
T ss_conf 01367657888888876
No 324
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=97.49 E-value=0.00019 Score=50.61 Aligned_cols=132 Identities=17% Similarity=0.247 Sum_probs=72.8
Q ss_pred HHHHCCCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCCEEECCCCCCCCCEEEEEEECCHHCCCCHHHHHHHHHHHHH
Q ss_conf 43202302431146631888999985520002345468721100012456835899950810002410356666788899
Q gi|254780809|r 215 IIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFL 294 (440)
Q Consensus 215 ~l~~g~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTTRD~i~~~~~i~g~~~~l~DTaGir~t~d~IE~~GI~ra~~ 294 (440)
.+..|-+|+|+|+.-+|||||+|.|+|-.. .-++.+.++|.++.=+|..-+|+.-.-|.+
T Consensus 364 ~I~~G~~vaiVG~SGsGKSTL~~LL~gly~------------p~~G~I~idg~di~~~~~~~lr~~i~~V~Q-------- 423 (581)
T PRK11176 364 KIPAGKTVALVGRSGSGKSTIANLLTRFYD------------IDEGEILLDGHDLRDYTLASLRNQVALVSQ-------- 423 (581)
T ss_pred CCCCCCEEECCCCCCCCHHHHHHHHHHHCC------------CCCCEEEECCEEHHHCCHHHHHCCCCCCCC--------
T ss_conf 579994431228999867899999985366------------788748789885121476665034556077--------
Q ss_pred HHHHHCCEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEE
Q ss_conf 85030110201358985663431289853222233344654200000133332323589999999996322035886320
Q gi|254780809|r 295 EVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374 (440)
Q Consensus 295 ~i~~aDlil~v~D~~~~~~~~~~~~~~~i~V~NK~Dl~~~~~~~~~~~ISaktg~Gi~~L~~~I~~~l~~~~~~~~~~i~ 374 (440)
| -++++.+=.+.+.+-.+ |-. .+ .-...|....++.++.+.+.+-+..........+.
T Consensus 424 -----~--~~lF~~TI~eNi~~~~~----------~~~---~~--~~i~~a~~~a~~~~~i~~lp~gldt~vge~G~~LS 481 (581)
T PRK11176 424 -----N--VHLFNDTVANNIAYART----------EQY---SR--EQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLS 481 (581)
T ss_pred -----C--CEEECCCHHHHHHCCCC----------CCC---CH--HHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCC
T ss_conf -----7--61107729999722674----------324---56--89999999877778998655411450048989789
Q ss_pred HHHHHHHHHHHHHH
Q ss_conf 14899999999999
Q gi|254780809|r 375 SHKRHLYHLSQTVR 388 (440)
Q Consensus 375 ~~~Rq~~~L~~a~~ 388 (440)
--+||+-++.+++-
T Consensus 482 gGQrQRialARall 495 (581)
T PRK11176 482 GGQRQRIAIARALL 495 (581)
T ss_pred HHHHHHHHHHHHHH
T ss_conf 99999999999996
No 325
>PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=97.48 E-value=0.00034 Score=48.91 Aligned_cols=129 Identities=15% Similarity=0.232 Sum_probs=72.2
Q ss_pred HHHCCCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCCEEECCCCCCCCCEEEEEEECCHHCCCCHHHHHHHHHHHHHH
Q ss_conf 32023024311466318889999855200023454687211000124568358999508100024103566667888998
Q gi|254780809|r 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295 (440)
Q Consensus 216 l~~g~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTTRD~i~~~~~i~g~~~~l~DTaGir~t~d~IE~~GI~ra~~~ 295 (440)
+..|-+|+|+|+.-+|||||+|.|+|-.. + -++.+.++|.++.=+|..-+|+.-.-|.+.
T Consensus 364 I~~Ge~vaIVG~SGsGKSTL~~LL~rly~----p--------~~G~I~idG~di~~i~~~~lR~~i~~V~Q~-------- 423 (593)
T PRK10790 364 VPSRNFVALVGHTGSGKSTLASLLMGYYP----L--------TEGEIRLDGRPLSSLSHSVLRQGVAMVQQD-------- 423 (593)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHCC----C--------CCCCCCCCCEECCCCCHHHHHHCCCCCCCC--------
T ss_conf 48997899879998868999999998556----7--------899416599324424688886315751666--------
Q ss_pred HHHHCCEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEH
Q ss_conf 50301102013589856634312898532222333446542000001333323235899999999963220358863201
Q gi|254780809|r 296 VENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPS 375 (440)
Q Consensus 296 i~~aDlil~v~D~~~~~~~~~~~~~~~i~V~NK~Dl~~~~~~~~~~~ISaktg~Gi~~L~~~I~~~l~~~~~~~~~~i~~ 375 (440)
-++++.+=.+.+.+ .+ |. .+ .-...|....|+++..+.+.+-+..........+.-
T Consensus 424 -------~~LF~gTI~eNi~~----------g~-~~----~~--~~i~~a~~~a~l~~~i~~lp~G~dT~vge~G~~LSg 479 (593)
T PRK10790 424 -------PVVLADTFLANVTL----------GR-DI----SE--EQVWQALETVQLAELARSLSDGLYTPLGEQGNTLSV 479 (593)
T ss_pred -------CCCCCCCHHHHHHH----------HC-CC----CH--HHHHHHHHHHHHHHHHHHCCCHHCCHHCCCCCCCCH
T ss_conf -------51456529999776----------00-23----67--999999999778999985742010442387688799
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 4899999999999
Q gi|254780809|r 376 HKRHLYHLSQTVR 388 (440)
Q Consensus 376 ~~Rq~~~L~~a~~ 388 (440)
-+||+-++.+++-
T Consensus 480 GQrQRiaiARall 492 (593)
T PRK10790 480 GQKQLLALARVLV 492 (593)
T ss_pred HHHHHHHHHHHHH
T ss_conf 9999999999995
No 326
>TIGR02857 CydD ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydD; InterPro: IPR014216 The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain and a C-terminal ATP-binding domain. In Escherichia coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in the export of redox-active thiol compounds such as cysteine and glutathione , . The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this entry are all either found in the gammaproteobacterial context, or the CydABCD context. All members of this entry scoring above the trusted cut off at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature, based on this operon in Bacillus subtilis, assigns cydC to the third gene in the operon, where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologues in this family in accordance with the precedence of publication of the E. coli name, CydD..
Probab=97.47 E-value=0.00064 Score=46.98 Aligned_cols=155 Identities=19% Similarity=0.250 Sum_probs=98.1
Q ss_pred HHHCCCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCCEEECCCCCCC------CCEEEEEEECC-HHCCCCHHHHHHH
Q ss_conf 3202302431146631888999985520002345468721100012456------83589995081-0002410356666
Q gi|254780809|r 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL------EGYLVKISDTA-GIRETDDIVEKEG 288 (440)
Q Consensus 216 l~~g~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTTRD~i~~~~~i------~g~~~~l~DTa-Gir~t~d~IE~~G 288 (440)
++-|-+|+|+|+.-+|||||+|.|+|- + +.-++.+.+ +|.+..=.|-. +.|+.
T Consensus 375 ~~pG~~vAl~G~SGaGKSTLL~lLLGf----~--------~P~~G~i~v~~~Gg~~G~~L~~~~~~W~W~~~-------- 434 (570)
T TIGR02857 375 VEPGERVALVGPSGAGKSTLLNLLLGF----V--------EPTEGAIVVERDGGINGVPLAEADADWSWRDQ-------- 434 (570)
T ss_pred ECCCCEEEEEECCCCCHHHHHHHHHCC----C--------CCCCCEEEEECCCCCCCCCCCCCCHHHHHHHC--------
T ss_conf 638704888627999788999999715----7--------64464688744888539764211310225541--------
Q ss_pred HHHHHHHHHHHCCEEECCCCCCHHHHHHHCCCCCCC---CCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 788899850301102013589856634312898532---22233344654200000133332323589999999996322
Q gi|254780809|r 289 IKRTFLEVENADLILLLKEINSKKEISFPKNIDFIF---IGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNK 365 (440)
Q Consensus 289 I~ra~~~i~~aDlil~v~D~~~~~~~~~~~~~~~i~---V~NK~Dl~~~~~~~~~~~ISaktg~Gi~~L~~~I~~~l~~~ 365 (440)
|-||-- . |+++ |.+-+=|..+.-.+. -.--|....|++++.+.+-+=+...
T Consensus 435 -------------iaWv~Q--~----------P~l~~gtiaeNi~La~~~A~~~-~~~~A~~~agl~~~~~~LP~Gl~t~ 488 (570)
T TIGR02857 435 -------------IAWVPQ--H----------PFLFAGTIAENIRLARPDASDA-EIREALERAGLDEFVAALPQGLDTP 488 (570)
T ss_pred -------------EEEECC--C----------CCCCHHHHHHHHHHCCCCCCHH-HHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf -------------343056--6----------6013647999997348999989-9999999972899999711131343
Q ss_pred CCCCCCCEEHHHHHHHHHHHHHHHHH---HHHHHCCC-CCCHHHHH-HHHHHHHHH
Q ss_conf 03588632014899999999999999---99753279-98014659-999999863
Q gi|254780809|r 366 FKKLPFSIPSHKRHLYHLSQTVRYLE---MASLNEKD-CGLDIIAE-NLRLASVSL 416 (440)
Q Consensus 366 ~~~~~~~i~~~~Rq~~~L~~a~~~L~---~~~~~~~~-~~~EliAe-eLr~A~~~L 416 (440)
..+....+.--+|||-+|-++.-.-. .....++. -.+|--+| ++++++..+
T Consensus 489 ~Ge~G~GLSGGq~QRlALARafl~~~~a~~llLLDEPTAhLD~~tEa~v~~~~~~l 544 (570)
T TIGR02857 489 IGEGGAGLSGGQAQRLALARAFLRDATAAPLLLLDEPTAHLDAETEAEVLEALRAL 544 (570)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHHCHHHCCCCEEEECCCCCCCHHHHHHHHHHHHHH
T ss_conf 58888847799999999999960611117603540776432189999999999999
No 327
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.44 E-value=0.0022 Score=43.28 Aligned_cols=112 Identities=21% Similarity=0.223 Sum_probs=56.8
Q ss_pred CEEEECCCCCCHHHHHHHHHC-------CHHCCCC-C------------------CCC----CCEEECCCCCCCCCEEEE
Q ss_conf 024311466318889999855-------2000234-5------------------468----721100012456835899
Q gi|254780809|r 221 KIVILGHSNAGKSSLFNALAK-------KDVAIVT-D------------------IPG----TTRDVLTIDLDLEGYLVK 270 (440)
Q Consensus 221 ~v~i~G~pN~GKSSL~N~L~~-------~~~aIVs-~------------------~~G----TTRD~i~~~~~i~g~~~~ 270 (440)
-|+++||+-|||.|-+-.|.. ++.+++| | +|- +-.|.-+ .+.-.+..+.
T Consensus 225 vi~lVGPTGVGKTTTiAKLAA~~~l~~~kkVaLIT~DTYRIgAvEQLktYa~Il~iPv~vv~~~~el~~-al~~~~~DlI 303 (432)
T PRK12724 225 VVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKE-TLARDGSELI 303 (432)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEECHHHHHH-HHHHCCCCEE
T ss_conf 999989999888999999999999974992799952665377999999999985994599518999999-9985699999
Q ss_pred EEECCHHCCCCH--HHHHHHHHHHHHHHHHH-C-CEEECCCCCCHH-HHH----HHCCCC-CCCCCCCCCCCCCCC
Q ss_conf 950810002410--35666678889985030-1-102013589856-634----312898-532222333446542
Q gi|254780809|r 271 ISDTAGIRETDD--IVEKEGIKRTFLEVENA-D-LILLLKEINSKK-EIS----FPKNID-FIFIGTKSDLYSTYT 336 (440)
Q Consensus 271 l~DTaGir~t~d--~IE~~GI~ra~~~i~~a-D-lil~v~D~~~~~-~~~----~~~~~~-~i~V~NK~Dl~~~~~ 336 (440)
|+||||-- ..| .++++ +.-++...+. + -+.+|+.++.+. ++. .....+ .=++++|.|-.....
T Consensus 304 LIDTAGrS-~rd~~~~~eL--~~ll~~~~~~~~ie~~LVLSaTtk~~dl~~ii~~f~~l~~~~lIfTKLDET~s~G 376 (432)
T PRK12724 304 LIDTAGYS-HRNLEQLERM--QSFYSCFGEKDSVENLLVLSSTSSYHHTLTVLKAYESLNYRRILLTKLDEADFLG 376 (432)
T ss_pred EEECCCCC-CCCHHHHHHH--HHHHHHHCCCCCCEEEEEEECCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCCC
T ss_conf 99299989-7899999999--9999863667885179999788998999999998426999849997122779866
No 328
>cd01855 YqeH YqeH. YqeH is an essential GTP-binding protein. Depletion of YqeH induces an excess initiation of DNA replication, suggesting that it negatively controls initiation of chromosome replication. The YqeH subfamily is common in eukaryotes and sporadically present in bacteria with probable acquisition by plants from chloroplasts. Proteins of the YqeH family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases.
Probab=97.41 E-value=0.00013 Score=51.82 Aligned_cols=71 Identities=30% Similarity=0.340 Sum_probs=51.4
Q ss_pred HHHH-HHHCCEEECCCCCCHH------HHHHHCCCCCCCCCCCCCCCCCCCH--------------------HHHHHHHH
Q ss_conf 9985-0301102013589856------6343128985322223334465420--------------------00001333
Q gi|254780809|r 293 FLEV-ENADLILLLKEINSKK------EISFPKNIDFIFIGTKSDLYSTYTE--------------------EYDHLISS 345 (440)
Q Consensus 293 ~~~i-~~aDlil~v~D~~~~~------~~~~~~~~~~i~V~NK~Dl~~~~~~--------------------~~~~~ISa 345 (440)
+..+ ...-+|++|+|+.+-+ ......++++++|+||+||.++... ...+.+||
T Consensus 28 l~~~~~~~~lVv~VvDi~Df~~S~~~~l~~~~~~~~v~lV~NK~DLLp~~~~~~~~~~~~~~~~~~~~~~~~~~v~lvSa 107 (190)
T cd01855 28 LSSISPKKALVVHVVDIFDFPGSLIPRLRLFGGNNPVILVGNKIDLLPKDKNLVRIKNWLRAKAAAGLGLKPKDVILISA 107 (190)
T ss_pred HHHCCCCCCEEEEEEECCCCCCCCCHHHHHHCCCCCEEEEEEHHHHCCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEC
T ss_conf 98524678459999754357644465579861798689999815517887658888989999975015998431799766
Q ss_pred HHHHHHHHHHHHHHHHHH
Q ss_conf 323235899999999963
Q gi|254780809|r 346 FTGEGLEELINKIKSILS 363 (440)
Q Consensus 346 ktg~Gi~~L~~~I~~~l~ 363 (440)
++|.|+++|++.|.+...
T Consensus 108 ~~~~gi~~L~~~i~~~~~ 125 (190)
T cd01855 108 KKGWGVEELINAIKKLAK 125 (190)
T ss_pred CCCCCHHHHHHHHHHHHC
T ss_conf 578698999999999746
No 329
>KOG0074 consensus
Probab=97.40 E-value=0.00034 Score=48.86 Aligned_cols=108 Identities=22% Similarity=0.369 Sum_probs=79.2
Q ss_pred HHCCCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCCEEECCCCCCCCC-EEEEEEECCHHCCCCHHHHHHHHHHH-HH
Q ss_conf 20230243114663188899998552000234546872110001245683-58999508100024103566667888-99
Q gi|254780809|r 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG-YLVKISDTAGIRETDDIVEKEGIKRT-FL 294 (440)
Q Consensus 217 ~~g~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTTRD~i~~~~~i~g-~~~~l~DTaGir~t~d~IE~~GI~ra-~~ 294 (440)
+.-+++.+.|--||||.|++-.|.++|..-+++.-|-.. ..+...| +...+.|-.|-|. |+-- ..
T Consensus 15 ~rEirilllGldnAGKTT~LKqL~sED~~hltpT~GFn~----k~v~~~g~f~LnvwDiGGqr~---------IRpyWsN 81 (185)
T KOG0074 15 RREIRILLLGLDNAGKTTFLKQLKSEDPRHLTPTNGFNT----KKVEYDGTFHLNVWDIGGQRG---------IRPYWSN 81 (185)
T ss_pred CCEEEEEEEECCCCCCHHHHHHHCCCCHHHCCCCCCCCE----EEEEECCCEEEEEEECCCCCC---------CCHHHHH
T ss_conf 464789997227776130888871378333156688524----787624707888885278665---------5445665
Q ss_pred HHHHHCCEEECCCCCCHHHHH-------------HHCCCCCCCCCCCCCCCCCCCH
Q ss_conf 850301102013589856634-------------3128985322223334465420
Q gi|254780809|r 295 EVENADLILLLKEINSKKEIS-------------FPKNIDFIFIGTKSDLYSTYTE 337 (440)
Q Consensus 295 ~i~~aDlil~v~D~~~~~~~~-------------~~~~~~~i~V~NK~Dl~~~~~~ 337 (440)
.-++.|.++||+|.+++...+ .....|+++-.||.|+.-..+.
T Consensus 82 Yyenvd~lIyVIDS~D~krfeE~~~el~ELleeeKl~~vpvlIfankQdlltaa~~ 137 (185)
T KOG0074 82 YYENVDGLIYVIDSTDEKRFEEISEELVELLEEEKLAEVPVLIFANKQDLLTAAKV 137 (185)
T ss_pred HHHCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHCCCEEEHHHHHHHHHHCCH
T ss_conf 55305548999847736768998899999852312200001001225678763426
No 330
>KOG1532 consensus
Probab=97.38 E-value=0.00025 Score=49.86 Aligned_cols=144 Identities=19% Similarity=0.317 Sum_probs=84.3
Q ss_pred HHHHCCCEEEECCCCCCHHHHHHHHHCCHHC------------CCCCCCC----CCEEECCCC-----CC----------
Q ss_conf 4320230243114663188899998552000------------2345468----721100012-----45----------
Q gi|254780809|r 215 IIRNGYKIVILGHSNAGKSSLFNALAKKDVA------------IVTDIPG----TTRDVLTID-----LD---------- 263 (440)
Q Consensus 215 ~l~~g~~v~i~G~pN~GKSSL~N~L~~~~~a------------IVs~~~G----TTRD~i~~~-----~~---------- 263 (440)
..+..+-+..+|-...||.|++.+|...-.+ -|.+.|- --||.|... ..
T Consensus 15 ~~~~p~~ilVvGMAGSGKTTF~QrL~~hl~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPNGgI~Ts 94 (366)
T KOG1532 15 AIQRPVIILVVGMAGSGKTTFMQRLNSHLHAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPNGGIVTS 94 (366)
T ss_pred CCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEECCHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHH
T ss_conf 55687079999447788413999999998623699808867888854888667756654309999998388998640335
Q ss_pred ------------------CCCEEEEEEECCHHCC-----CCHHHHHHHHHHHHHHHHHH--CCEEECCCCCC---H----
Q ss_conf ------------------6835899950810002-----41035666678889985030--11020135898---5----
Q gi|254780809|r 264 ------------------LEGYLVKISDTAGIRE-----TDDIVEKEGIKRTFLEVENA--DLILLLKEINS---K---- 311 (440)
Q Consensus 264 ------------------i~g~~~~l~DTaGir~-----t~d~IE~~GI~ra~~~i~~a--Dlil~v~D~~~---~---- 311 (440)
-+...+.|+||||--| +...|= .+.+..+ -+|.|++|... +
T Consensus 95 LNLF~tk~dqv~~~iek~~~~~~~~liDTPGQIE~FtWSAsGsII-------te~lass~ptvv~YvvDt~rs~~p~tFM 167 (366)
T KOG1532 95 LNLFATKFDQVIELIEKRAEEFDYVLIDTPGQIEAFTWSASGSII-------TETLASSFPTVVVYVVDTPRSTSPTTFM 167 (366)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCEEEEEECCCCCCH-------HHHHHHCCCEEEEEEECCCCCCCCHHHH
T ss_conf 899998789999999974220477997488806899842785015-------8667613985999994477678841699
Q ss_pred ------HHHHHHCCCCCCCCCCCCCCCCCCC-----HH----------------------------------HHHHHHHH
Q ss_conf ------6634312898532222333446542-----00----------------------------------00013333
Q gi|254780809|r 312 ------KEISFPKNIDFIFIGTKSDLYSTYT-----EE----------------------------------YDHLISSF 346 (440)
Q Consensus 312 ------~~~~~~~~~~~i~V~NK~Dl~~~~~-----~~----------------------------------~~~~ISak 346 (440)
..+......|.|+|+||+|+....- .+ ..+.+|+.
T Consensus 168 SNMlYAcSilyktklp~ivvfNK~Dv~d~~fa~eWm~DfE~FqeAl~~~~~~y~s~l~~SmSL~leeFY~~lrtv~VSs~ 247 (366)
T KOG1532 168 SNMLYACSILYKTKLPFIVVFNKTDVSDSEFALEWMTDFEAFQEALNEAESSYMSNLTRSMSLMLEEFYRSLRTVGVSSV 247 (366)
T ss_pred HHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCEEEEECC
T ss_conf 88999999998626876999714344561889999999999999997630326677665479899999831755777404
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q ss_conf 2323589999999996322
Q gi|254780809|r 347 TGEGLEELINKIKSILSNK 365 (440)
Q Consensus 347 tg~Gi~~L~~~I~~~l~~~ 365 (440)
||.|.+.+..++.+.+...
T Consensus 248 tG~G~ddf~~av~~~vdEy 266 (366)
T KOG1532 248 TGEGFDDFFTAVDESVDEY 266 (366)
T ss_pred CCCCHHHHHHHHHHHHHHH
T ss_conf 5786788999999999999
No 331
>PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed
Probab=97.35 E-value=0.00035 Score=48.80 Aligned_cols=54 Identities=28% Similarity=0.432 Sum_probs=42.6
Q ss_pred HHHHCCCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCCEEECCCCCCCCCEEEEEEECCHHCCC
Q ss_conf 432023024311466318889999855200023454687211000124568358999508100024
Q gi|254780809|r 215 IIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 (440)
Q Consensus 215 ~l~~g~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTTRD~i~~~~~i~g~~~~l~DTaGir~t 280 (440)
.+..|-+|+|+|+.-+|||||+|.|++.. |+-++.+.++|.+++=+|.+-+|..
T Consensus 363 ~i~~Ge~vaiVG~SGsGKSTL~~LL~r~y------------dp~~G~I~idG~di~~~~~~~lr~~ 416 (575)
T PRK11160 363 QIKAGEKVALLGRTGCGKSTLLQLLTRAW------------DPQQGEILLNGQPIASYSEAALRQA 416 (575)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHHCCC------------CCCCCEEEECCEECCCCCHHHHHHH
T ss_conf 97699889998899975999999986236------------7899889999897563888999876
No 332
>KOG1547 consensus
Probab=97.34 E-value=0.00085 Score=46.13 Aligned_cols=120 Identities=24% Similarity=0.343 Sum_probs=70.0
Q ss_pred HHHHHCC--CEEEECCCCCCHHHHHHHHHCCHHCC--CC-----CCCCCCEE-ECCCCCCCCCE--EEEEEECCHHCCCC
Q ss_conf 5432023--02431146631888999985520002--34-----54687211-00012456835--89995081000241
Q gi|254780809|r 214 EIIRNGY--KIVILGHSNAGKSSLFNALAKKDVAI--VT-----DIPGTTRD-VLTIDLDLEGY--LVKISDTAGIRETD 281 (440)
Q Consensus 214 ~~l~~g~--~v~i~G~pN~GKSSL~N~L~~~~~aI--Vs-----~~~GTTRD-~i~~~~~i~g~--~~~l~DTaGir~t~ 281 (440)
+.++.|+ .|..+|+...|||||+|.|.....+= .+ ++|-||-= .+...+.=+|+ .++++||||+.+.-
T Consensus 39 k~mk~GF~FNIMVVgqSglgkstlinTlf~s~v~~~s~~~~~~~p~pkT~eik~~thvieE~gVklkltviDTPGfGDqI 118 (336)
T KOG1547 39 KTMKTGFDFNIMVVGQSGLGKSTLINTLFKSHVSDSSSSDNSAEPIPKTTEIKSITHVIEEKGVKLKLTVIDTPGFGDQI 118 (336)
T ss_pred HHHHCCCCEEEEEEECCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEEEEEEEEEEECCEEEEEEEECCCCCCCCC
T ss_conf 99862672579998068777115678888888761258976567556427887534453306658998883489853333
Q ss_pred ------HHHHHHHHHHHH------------HHHH--HHCCEEECCCCCC----HHHHHHHC----CCCCCCCCCCCCCCC
Q ss_conf ------035666678889------------9850--3011020135898----56634312----898532222333446
Q gi|254780809|r 282 ------DIVEKEGIKRTF------------LEVE--NADLILLLKEINS----KKEISFPK----NIDFIFIGTKSDLYS 333 (440)
Q Consensus 282 ------d~IE~~GI~ra~------------~~i~--~aDlil~v~D~~~----~~~~~~~~----~~~~i~V~NK~Dl~~ 333 (440)
++|++.--+.-. +.+. .....||.+.++- +-++++++ -.+++-|+.|+|-..
T Consensus 119 nN~ncWePI~kyIneQye~yL~eElni~R~kripDTRVHcclyFi~ptGhsLrplDieflkrLt~vvNvvPVIakaDtlT 198 (336)
T KOG1547 119 NNDNCWEPIEKYINEQYEQYLREELNIAREKRIPDTRVHCCLYFIPPTGHSLRPLDIEFLKRLTEVVNVVPVIAKADTLT 198 (336)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEEECCCCCCCCCCCHHHHHHHHHHHEEEEEEEECCCCC
T ss_conf 75320677999999999999999986776513887547899999679887567044999998865520433575066442
No 333
>COG3523 IcmF Type VI protein secretion system component VasK [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.31 E-value=0.00027 Score=49.55 Aligned_cols=139 Identities=17% Similarity=0.154 Sum_probs=69.9
Q ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHH------HCCHHCCCCCCCCCCEEECCCCCC-C
Q ss_conf 886401000112123332234554320230243114663188899998------552000234546872110001245-6
Q gi|254780809|r 192 VLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNAL------AKKDVAIVTDIPGTTRDVLTIDLD-L 264 (440)
Q Consensus 192 ~~~~i~~i~~~l~~ll~~~~~~~~l~~g~~v~i~G~pN~GKSSL~N~L------~~~~~aIVs~~~GTTRD~i~~~~~-i 264 (440)
+..+..+....++.........+.+.+-+=-.++|+|++||+|++.-. .....+.-...+| || +++ +
T Consensus 98 l~~~~~e~~~~l~r~~~~~~~rr~lyeLPWy~viG~pgsGKTtal~~sgl~Fpl~~~~~~~~~~~~g-T~-----~cdww 171 (1188)
T COG3523 98 LNAQLGEALRTLKRRKRGRPGRRYLYELPWYMVIGPPGSGKTTALLNSGLQFPLAEQMGALGLAGPG-TR-----NCDWW 171 (1188)
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCHHHCCCCEEEECCCCCCCCHHHHCCCCCCCCHHHHCCCCCCCCC-CC-----CCCCC
T ss_conf 9999999999999998537420046518805885488898400875155366615553312226888-73-----35754
Q ss_pred CCEEEEEEECCHHC--CC-CHHHH---HHHHH---HHHHHHHHHCCEEECCCCCC-----HHHH-H--------------
Q ss_conf 83589995081000--24-10356---66678---88998503011020135898-----5663-4--------------
Q gi|254780809|r 265 EGYLVKISDTAGIR--ET-DDIVE---KEGIK---RTFLEVENADLILLLKEINS-----KKEI-S-------------- 315 (440)
Q Consensus 265 ~g~~~~l~DTaGir--~t-~d~IE---~~GI~---ra~~~i~~aDlil~v~D~~~-----~~~~-~-------------- 315 (440)
-+-.-.|+||||=- .. .++.. =.|.- |-...-.--|-|++-++.++ +.+. .
T Consensus 172 f~deaVlIDtaGry~~q~s~~~~~~~~W~~fL~lLkk~R~~~piNGiiltlsv~~L~~~~~~~~~~~~~~LR~RL~El~~ 251 (1188)
T COG3523 172 FTDEAVLIDTAGRYITQDSADEVDRAEWLGFLGLLKKYRRRRPLNGIILTLSVSDLLTADPAEREALARTLRARLQELRE 251 (1188)
T ss_pred CCCCEEEECCCCCEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEEHHHHCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 25534898587524436675023488899988899973557888637999789997389999999999999999999998
Q ss_pred -HHCCCCCCCCCCCCCCCCCCC
Q ss_conf -312898532222333446542
Q gi|254780809|r 316 -FPKNIDFIFIGTKSDLYSTYT 336 (440)
Q Consensus 316 -~~~~~~~i~V~NK~Dl~~~~~ 336 (440)
+--..|+.+++||.|+.+...
T Consensus 252 tL~~~~PVYl~lTk~Dll~GF~ 273 (1188)
T COG3523 252 TLHARLPVYLVLTKADLLPGFE 273 (1188)
T ss_pred HHCCCCCEEEEEECCCCCCCHH
T ss_conf 4156776389986210021579
No 334
>PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional
Probab=97.27 E-value=0.00042 Score=48.28 Aligned_cols=130 Identities=14% Similarity=0.205 Sum_probs=68.4
Q ss_pred HHHCCCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCCEEECCCCCCCCCEEEEEEECCHHCCCCHHHHHHHHHHHHHH
Q ss_conf 32023024311466318889999855200023454687211000124568358999508100024103566667888998
Q gi|254780809|r 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295 (440)
Q Consensus 216 l~~g~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTTRD~i~~~~~i~g~~~~l~DTaGir~t~d~IE~~GI~ra~~~ 295 (440)
+..|=+|+|+|+.-+|||||+|.|+|-.. +. ++.+.++|.++.=+|..-+|+.-.-|.+
T Consensus 358 i~~Ge~vaiVG~SGsGKSTL~~LL~gly~----p~--------~G~I~idg~di~~i~~~~lR~~i~~V~Q--------- 416 (585)
T PRK13657 358 AKPGQTVAIVGPTGAGKSTLINLLHRVFD----PQ--------SGRIRIDGTDIRTVTRASLRRNIGVVFQ--------- 416 (585)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHHHHCC----CC--------CCCEEECCEECHHCCHHHHHHHCCEECC---------
T ss_conf 75998899988989869999999860157----88--------7967589896101689999852522166---------
Q ss_pred HHHHCCEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEH
Q ss_conf 50301102013589856634312898532222333446542000001333323235899999999963220358863201
Q gi|254780809|r 296 VENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPS 375 (440)
Q Consensus 296 i~~aDlil~v~D~~~~~~~~~~~~~~~i~V~NK~Dl~~~~~~~~~~~ISaktg~Gi~~L~~~I~~~l~~~~~~~~~~i~~ 375 (440)
| -++++.+=.+.+.+ .+.|. .+ +-...|....|++++++.+.+-+.....+....+.-
T Consensus 417 ----~--~~LF~gTI~eNI~~----------g~~~~-----sd-~ei~~a~~~a~~~~~I~~lp~G~dT~vge~G~~LSG 474 (585)
T PRK13657 417 ----E--AGLFNRSIEDNLRV----------GRPDA-----TD-EEMRAAAERAQALDFIERKEDGYDTVVGERGRQLSG 474 (585)
T ss_pred ----C--CCCCCHHHHHHHHC----------CCCCC-----CH-HHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCCCCH
T ss_conf ----7--63547659988752----------79999-----86-889999998432799971756666801378886899
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 4899999999999
Q gi|254780809|r 376 HKRHLYHLSQTVR 388 (440)
Q Consensus 376 ~~Rq~~~L~~a~~ 388 (440)
-+||+-++.+|+-
T Consensus 475 GQrQRialARAll 487 (585)
T PRK13657 475 GERQRLAIARALL 487 (585)
T ss_pred HHHHHHHHHHHHH
T ss_conf 9999999999994
No 335
>KOG1191 consensus
Probab=97.27 E-value=0.00013 Score=51.70 Aligned_cols=56 Identities=23% Similarity=0.198 Sum_probs=52.2
Q ss_pred CEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCCEEECCCCCCCCCEEEEEEECCHHCC
Q ss_conf 02431146631888999985520002345468721100012456835899950810002
Q gi|254780809|r 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279 (440)
Q Consensus 221 ~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTTRD~i~~~~~i~g~~~~l~DTaGir~ 279 (440)
++.+.|+||||||.|+|. +.+++|++.+|-|||.......++...|+-.||+|+.-
T Consensus 77 s~~v~~~~~~~~~~l~~~---~~r~~~~~e~~v~~D~~l~l~~~gp~sFtgeD~~el~~ 132 (531)
T KOG1191 77 SVMVPKRRNAGLRALYNP---EVRVYVVDEDGVTRDRALGLYFLGPQSFTGEDVVELQT 132 (531)
T ss_pred CCCCCCCCCCCCCCCCCH---HHCCCCCCCCCCCHHHHHHCCCCCCCEEEEEEEEEEEE
T ss_conf 132578875450101485---55122468887422133410035882234332588998
No 336
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.25 E-value=0.0025 Score=42.89 Aligned_cols=113 Identities=20% Similarity=0.202 Sum_probs=56.7
Q ss_pred CEEEECCCCCCHHHHHHHHHCC-------H---HCCCC-CC--CCCC--------------------EEECCCCCCCCCE
Q ss_conf 0243114663188899998552-------0---00234-54--6872--------------------1100012456835
Q gi|254780809|r 221 KIVILGHSNAGKSSLFNALAKK-------D---VAIVT-DI--PGTT--------------------RDVLTIDLDLEGY 267 (440)
Q Consensus 221 ~v~i~G~pN~GKSSL~N~L~~~-------~---~aIVs-~~--~GTT--------------------RD~i~~~~~i~g~ 267 (440)
-++++||+-|||.|-+-.|..+ + .+++| |. +|.. .|.-..--...+.
T Consensus 176 vi~lVGPTGvGKTTTiAKLAa~~~l~~~~k~~~V~lit~DtyRigAveQLktya~il~vp~~v~~~~~dl~~~l~~~~~~ 255 (388)
T PRK12723 176 IFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQSKDF 255 (388)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCHHHHHHHHHHHHHHCCCEEEECCHHHHHHHHHHHCCC
T ss_conf 89998998875787999999999986267677379998078758899999999999788069857889999999972499
Q ss_pred EEEEEECCHHCCCC-HHHHHHHHHHHHHHHHHHCC-EEECCCCCCHH-HHH-HH---CCC-CCCCCCCCCCCCCCCC
Q ss_conf 89995081000241-03566667888998503011-02013589856-634-31---289-8532222333446542
Q gi|254780809|r 268 LVKISDTAGIRETD-DIVEKEGIKRTFLEVENADL-ILLLKEINSKK-EIS-FP---KNI-DFIFIGTKSDLYSTYT 336 (440)
Q Consensus 268 ~~~l~DTaGir~t~-d~IE~~GI~ra~~~i~~aDl-il~v~D~~~~~-~~~-~~---~~~-~~i~V~NK~Dl~~~~~ 336 (440)
.+.|+||||-...+ ..++.+ +.-+..+. .|. +++|++++... +.. .. ... ..=++++|.|-.....
T Consensus 256 D~IlIDTAGrs~~d~~~~~el--~~~~~~~~-~~~~~~Lvlsat~~~~d~~~i~~~f~~~~~~~~I~TKlDEt~~~G 329 (388)
T PRK12723 256 DLVLIDTIGKSPKDFMKLAEM--KELLNACG-RDAEFHLAVSSTTKTSDIKEIFHQFSPFSYKTVIFTKLDETTCVG 329 (388)
T ss_pred CEEEEECCCCCCCCHHHHHHH--HHHHHHCC-CCCEEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCCC
T ss_conf 999995899885689999999--99997418-984599998798999999999998427999849998322789866
No 337
>PRK13579 gcvT glycine cleavage system aminomethyltransferase T; Provisional
Probab=97.25 E-value=0.0047 Score=40.96 Aligned_cols=53 Identities=19% Similarity=0.222 Sum_probs=46.6
Q ss_pred CCCEEEEECCCHHHHHHHHHHHCCCCC--CCCEEEEEEEECCCCCEEEEEEEEEE
Q ss_conf 761699972738899999987166888--87538998875489867206999995
Q gi|254780809|r 17 PSAISIIRLSGPSCFQVCEFICKKKKP--FPRKASLRYFFGLDGRILDKGLLIVF 69 (440)
Q Consensus 17 ~~aiaviRiSG~~~~~i~~~~~~~~~~--~~~~~~~~~~~~~~~~~iD~~l~~~f 69 (440)
.|..+.|+|+||++.+.++.++..+.+ ++.+..|..+.+.+|-++|++++.-+
T Consensus 58 ~S~~~ki~I~G~DA~~fL~~l~t~dv~~l~~G~~~Yt~~Ln~~Ggi~~D~~v~rl 112 (371)
T PRK13579 58 VSHMGQIEVSGKDAAAALERLVPQDILALKEGRQRYTFFTNDQGGILDDLMVTNL 112 (371)
T ss_pred CCCCEEEEEECCCHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCCEEEEEEEEEE
T ss_conf 7984899998789999998861537777899968999988799978777899982
No 338
>TIGR00503 prfC peptide chain release factor 3; InterPro: IPR004548 Peptide chain release factor 3 increases the formation of ribosomal termination complexes and stimulates activity of RF-1 and RF-2. It binds to guanine nucleotides and has a strong preference for UGA stop codons. This translation releasing factor, RF-3 (prfC) was originally described as stop codon-independent, in contrast to peptide chain release factor 1 (RF-1, prfA) and RF-2 (prfB). RF-1 and RF-2 are closely related to each other, while RF-3 is similar to elongation factors EF-Tu and EF-G; RF-1 is active at UAA and UAG and RF-2 is active at UAA and UGA. All bacteria and organelles have RF-1. The Mycoplasmas and organelles, which translate UGA as Trp rather than as a stop codon, lack RF-2. RF-3, in contrast, seems to be rare among bacteria and is found so far only in Escherichia coli and some other gamma subdivision Proteobacteria, in Synechocystis sp. (strain PCC 6803), and in Staphylococcus aureus.; GO: 0005525 GTP binding, 0016149 translation release factor activity codon specific, 0006415 translational termination, 0005737 cytoplasm.
Probab=97.24 E-value=0.00054 Score=47.49 Aligned_cols=105 Identities=21% Similarity=0.314 Sum_probs=75.4
Q ss_pred CEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCC----------EEECC----------C---CCCCCCEEEEEEECCHH
Q ss_conf 0243114663188899998552000234546872----------11000----------1---24568358999508100
Q gi|254780809|r 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT----------RDVLT----------I---DLDLEGYLVKISDTAGI 277 (440)
Q Consensus 221 ~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTT----------RD~i~----------~---~~~i~g~~~~l~DTaGi 277 (440)
+-||+-.|.|||+||--.++=+=-|| -.+|+- -|+.+ . .+.+.|.-+.|+||||=
T Consensus 13 ~FAIISHPDAGKTT~TEK~LLyG~AI--Q~AG~VK~r~S~~~A~SDWM~ME~QRGISIT~~VlQF~Y~~~l~NLLDTPGH 90 (530)
T TIGR00503 13 TFAIISHPDAGKTTLTEKVLLYGGAI--QTAGAVKGRGSQRHAKSDWMEMEKQRGISITTSVLQFPYRDCLVNLLDTPGH 90 (530)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHH--HHCCCCCCCCCCCCCCHHHHHHHHCCCCEEEEEEEEECCCCCEEECCCCCCC
T ss_conf 54366168887424678888742566--5224412200122122137887505881444127741457745620368588
Q ss_pred CC-CCHHHHHHHHHHHHHHHHHHCCEEECCCCCCH--------HHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 02-41035666678889985030110201358985--------6634312898532222333446542
Q gi|254780809|r 278 RE-TDDIVEKEGIKRTFLEVENADLILLLKEINSK--------KEISFPKNIDFIFIGTKSDLYSTYT 336 (440)
Q Consensus 278 r~-t~d~IE~~GI~ra~~~i~~aDlil~v~D~~~~--------~~~~~~~~~~~i~V~NK~Dl~~~~~ 336 (440)
.+ ++| |+..+.-+|..+.|+|+-.- -+...+++.|++.-+||-|.....+
T Consensus 91 ~DFSED---------TYRTL~A~D~~~M~IDaAKG~E~~T~KL~EV~RLR~~PI~TF~NKLDR~~~~P 149 (530)
T TIGR00503 91 EDFSED---------TYRTLTAVDNCLMVIDAAKGVETRTRKLMEVTRLRDLPILTFINKLDRDIRDP 149 (530)
T ss_pred CCCCCH---------HHHHHHHHHHHEEEHHCCCCHHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCH
T ss_conf 876404---------67999985123001111256123424454201000474433523206543553
No 339
>PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional
Probab=97.24 E-value=0.00059 Score=47.23 Aligned_cols=52 Identities=17% Similarity=0.240 Sum_probs=39.9
Q ss_pred HHHCCCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCCEEECCCCCCCCCEEEEEEECCHHCC
Q ss_conf 3202302431146631888999985520002345468721100012456835899950810002
Q gi|254780809|r 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279 (440)
Q Consensus 216 l~~g~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTTRD~i~~~~~i~g~~~~l~DTaGir~ 279 (440)
+..|=+|+|+|+.-+|||||+|.|+|.... . ++.+.++|.++.=+|..-+|.
T Consensus 338 I~~Ge~vaIVG~SGsGKSTLl~LL~g~y~p----~--------~G~I~idg~di~~i~~~~lR~ 389 (569)
T PRK10789 338 LKPGQMLGICGPTGSGKSTLLSLIQRHFDV----S--------EGDIRFHDIPLTKLQLDSWRS 389 (569)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHHHHHHC----C--------CCCEEEECEECCCCCHHHHHH
T ss_conf 889978998799999879999999977642----6--------787465010134257688863
No 340
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=97.20 E-value=0.0017 Score=44.10 Aligned_cols=199 Identities=17% Similarity=0.150 Sum_probs=102.9
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHH---H---HHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHH--HHHHHHHHHHH-
Q ss_conf 99887531431024566567769988---8---654443113544311233258888640100011--21233322345-
Q gi|254780809|r 143 RRLSMEGMSGELSSLYGQWIDKLTHI---R---SFIEADLDFSEEEDVQNFSSKEVLNDILFLKND--ISSHISQGKLG- 213 (440)
Q Consensus 143 ~~~a~~~l~G~ls~~i~~lr~~L~~~---~---a~iEa~IDF~dEedi~~~~~~~~~~~i~~i~~~--l~~ll~~~~~~- 213 (440)
.-.|.+.+.|.+..++..+-+-+.++ . -.+.--+|.|.|++-+.. ......+..+ ++..--.+...
T Consensus 411 ~LiAf~~l~~~f~~pi~~L~~~~~~~q~~~~~~~rL~dil~~~~E~~~~~~-----~~~~~~~~g~I~~~nvsf~y~~~~ 485 (709)
T COG2274 411 QLVAFNMLAGYFISPITRLSQLWTDFQQAKVALERLGDILDTPPEQEGDKT-----LIHLPKLQGEIEFENVSFRYGPDD 485 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCC-----CCCCCCCCCEEEEEEEEEEECCCC
T ss_conf 999999999998769999999999999999999999999639864456665-----555666576289987899817998
Q ss_pred --------HHHHHCCCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCCEEECCCCCCCCCEEEEEEECCHHCCCCHHHH
Q ss_conf --------543202302431146631888999985520002345468721100012456835899950810002410356
Q gi|254780809|r 214 --------EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVE 285 (440)
Q Consensus 214 --------~~l~~g~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTTRD~i~~~~~i~g~~~~l~DTaGir~t~d~IE 285 (440)
-.+..|=+|+|+|+.-+|||||+.-|+|-.. + -++.+.++|+...-+|.+-+|+--.-+.
T Consensus 486 ~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~----p--------~~G~I~~dg~dl~~i~~~~lR~~ig~V~ 553 (709)
T COG2274 486 PPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYK----P--------QQGRILLDGVDLNDIDLASLRRQVGYVL 553 (709)
T ss_pred CCHHHCEEEEECCCCEEEEECCCCCCHHHHHHHHHCCCC----C--------CCCEEEECCEEHHHCCHHHHHHHEEEEC
T ss_conf 441215027767998899987999988999999836788----8--------8855999987278669999986546874
Q ss_pred HHHHHHHHHHHHHHCCEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 66678889985030110201358985663431289853222233344654200000133332323589999999996322
Q gi|254780809|r 286 KEGIKRTFLEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNK 365 (440)
Q Consensus 286 ~~GI~ra~~~i~~aDlil~v~D~~~~~~~~~~~~~~~i~V~NK~Dl~~~~~~~~~~~ISaktg~Gi~~L~~~I~~~l~~~ 365 (440)
+.. ++++.+-.+.+. +.++... .+-.+.|..-.|+.+.+..+-.-+...
T Consensus 554 Q~~---------------~Lf~gSI~eNi~---------------l~~p~~~-~e~i~~A~~~ag~~~fI~~lP~gy~t~ 602 (709)
T COG2274 554 QDP---------------FLFSGSIRENIA---------------LGNPEAT-DEEIIEAAQLAGAHEFIENLPMGYDTP 602 (709)
T ss_pred CCC---------------HHHCCCHHHHHH---------------CCCCCCC-HHHHHHHHHHHCCHHHHHHCCCCCCCC
T ss_conf 665---------------320473987974---------------6899999-799999999837689998360545623
Q ss_pred CCCCCCCEEHHHHHHHHHHHHHHH
Q ss_conf 035886320148999999999999
Q gi|254780809|r 366 FKKLPFSIPSHKRHLYHLSQTVRY 389 (440)
Q Consensus 366 ~~~~~~~i~~~~Rq~~~L~~a~~~ 389 (440)
..+....+..-+||+-+|.+++-.
T Consensus 603 v~E~G~~LSGGQrQrlalARaLl~ 626 (709)
T COG2274 603 VGEGGANLSGGQRQRLALARALLS 626 (709)
T ss_pred CCCCCCCCCHHHHHHHHHHHHHCC
T ss_conf 204898888889999999998546
No 341
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=97.20 E-value=0.00035 Score=48.82 Aligned_cols=57 Identities=32% Similarity=0.363 Sum_probs=44.6
Q ss_pred CCCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCCEEECCCCCCCCCEEEEEEECCHH
Q ss_conf 23024311466318889999855200023454687211000124568358999508100
Q gi|254780809|r 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277 (440)
Q Consensus 219 g~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTTRD~i~~~~~i~g~~~~l~DTaGi 277 (440)
|--++|+||+.|||+||+|+|+.....+...++-|||-.-.. +.+|..+.+++..=+
T Consensus 1 G~livl~GpsG~GK~tl~~~l~~~~~~~~~~vs~TTR~~R~g--E~dG~dY~Fvs~~~F 57 (180)
T TIGR03263 1 GLLIVISGPSGVGKSTLVKALLEEDPNLKFSISATTRKPRPG--EVDGVDYFFVSKEEF 57 (180)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHCCCCEEEEECCCCCCCCC--CCCCCCEEEECHHHH
T ss_conf 939999899988999999999976899448870446897998--778873478508999
No 342
>cd01858 NGP_1 NGP-1. Autoantigen NGP-1 (Nucleolar G-protein gene 1) has been shown to localize in the nucleolus and nucleolar organizers in all cell types analyzed, which is indicative of a function in ribosomal assembly. NGP-1 and its homologs show a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with NKXD motif) are relocated to the N terminus.
Probab=97.16 E-value=0.00049 Score=47.76 Aligned_cols=70 Identities=16% Similarity=0.239 Sum_probs=46.2
Q ss_pred HHHHHHHCCEEECCCCCCHH------HHHHH----CCCCCCCCCCCCCCCCCCCHHH------------HHHHHHHHHHH
Q ss_conf 99850301102013589856------63431----2898532222333446542000------------00133332323
Q gi|254780809|r 293 FLEVENADLILLLKEINSKK------EISFP----KNIDFIFIGTKSDLYSTYTEEY------------DHLISSFTGEG 350 (440)
Q Consensus 293 ~~~i~~aDlil~v~D~~~~~------~~~~~----~~~~~i~V~NK~Dl~~~~~~~~------------~~~ISaktg~G 350 (440)
++.+++||+||+|+|+..+. ..... .++|.++|+||+||.+...... .+..|+....|
T Consensus 3 ~~~i~~aD~vl~V~DaR~p~ss~n~~l~~~lr~~~~~K~~i~VlNK~Dl~~~~~~~~w~~~l~~~~~~~~~~~s~~~~~~ 82 (157)
T cd01858 3 YKVIDSSDVVIQVLDARDPMGTRCKHVEEYLKKEKPHKHLIFVLNKCDLVPTWVTARWVKILSKEYPTIAFHASINNPFG 82 (157)
T ss_pred HHHHHHCCEEEEEEECCCCCCCCCHHHHHHHHHCCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEEEECCCCCC
T ss_conf 89787599999998898888878989999987537999789999894479878999999986488973999953238646
Q ss_pred HHHHHHHHHHHH
Q ss_conf 589999999996
Q gi|254780809|r 351 LEELINKIKSIL 362 (440)
Q Consensus 351 i~~L~~~I~~~l 362 (440)
...|.+.+.+..
T Consensus 83 ~~~l~~~l~~~~ 94 (157)
T cd01858 83 KGSLIQLLRQFS 94 (157)
T ss_pred HHHHHHHHHHHH
T ss_conf 899999999876
No 343
>KOG3886 consensus
Probab=97.14 E-value=0.0026 Score=42.77 Aligned_cols=115 Identities=20% Similarity=0.275 Sum_probs=78.7
Q ss_pred CCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCCEEECCCCCCCCC-EEEEEEECCHHCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 30243114663188899998552000234546872110001245683-58999508100024103566667888998503
Q gi|254780809|r 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEG-YLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298 (440)
Q Consensus 220 ~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTTRD~i~~~~~i~g-~~~~l~DTaGir~t~d~IE~~GI~ra~~~i~~ 298 (440)
-+|.+.|++.+||||+=-.+....+|--+.-||-|-|+....+-+-| ....+.|-.|- +..+|..--..--.....
T Consensus 5 kKvlLMGrsGsGKsSmrsiiF~ny~a~D~~rlg~tidveHsh~RflGnl~LnlwDcggq---e~fmen~~~~q~d~iF~n 81 (295)
T KOG3886 5 KKVLLMGRSGSGKSSMRSIIFANYIARDTRRLGATIDVEHSHVRFLGNLVLNLWDCGGQ---EEFMENYLSSQEDNIFRN 81 (295)
T ss_pred CEEEEECCCCCCCCCCCHHHHHHHHHHHHHCCCCCCEEEEHHHHHHHHHEEEHHCCCCC---HHHHHHHHHHCCHHHHEE
T ss_conf 23888504788743452056665656655166886116643544420010002136780---999998876320010100
Q ss_pred HCCEEECCCCCCHHH---H--------HHHCC---CCCCCCCCCCCCCCCCCH
Q ss_conf 011020135898566---3--------43128---985322223334465420
Q gi|254780809|r 299 ADLILLLKEINSKKE---I--------SFPKN---IDFIFIGTKSDLYSTYTE 337 (440)
Q Consensus 299 aDlil~v~D~~~~~~---~--------~~~~~---~~~i~V~NK~Dl~~~~~~ 337 (440)
.+++++|+|++..+. + ...++ .++.+.+.|.||......
T Consensus 82 v~vli~vFDves~e~~~D~~~yqk~Le~ll~~SP~AkiF~l~hKmDLv~~d~r 134 (295)
T KOG3886 82 VQVLIYVFDVESREMEKDFHYYQKCLEALLQNSPEAKIFCLLHKMDLVQEDAR 134 (295)
T ss_pred HEEEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCEEEEEEEECHHCCCCHH
T ss_conf 21146654212136666489999999999853974237778740300025607
No 344
>TIGR00991 3a0901s02IAP34 GTP-binding protein; InterPro: IPR005688 Two integral outer envelope GTPases, Toc34 and Toc86, are proposed to regulate the recognition and translocation of nuclear-encoded preproteins during the early stages of protein import into chloroplasts.. The cytosolic region of Toc34 reveals 34% alpha-helical and 260eta-strand structure and is stabilized by intramolecular electrostatic interaction. Toc34 binds both chloroplast preproteins and isolated transit peptides in a guanosine triphosphate- (GTP-) dependent mechanism . ; GO: 0015450 P-P-bond-hydrolysis-driven protein transmembrane transporter activity, 0006886 intracellular protein transport, 0009707 chloroplast outer membrane.
Probab=97.13 E-value=0.00092 Score=45.89 Aligned_cols=102 Identities=25% Similarity=0.370 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCC-CEEECCCCCCCCCEEEEEEECCHHCC
Q ss_conf 11212333223455432023024311466318889999855200023454687-21100012456835899950810002
Q gi|254780809|r 201 NDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGT-TRDVLTIDLDLEGYLVKISDTAGIRE 279 (440)
Q Consensus 201 ~~l~~ll~~~~~~~~l~~g~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GT-TRD~i~~~~~i~g~~~~l~DTaGir~ 279 (440)
.++.+++...+.- --+..+|.+.|+-.|||||-.|.+.|+..+-||..-.- .|-.+- .-.-.|+.+.++||||+-|
T Consensus 23 ~~l~e~lG~~k~e--dv~~lt~lvmGkGGvGksstvn~~~Ge~~~~~s~fqseG~rP~~~-sr~r~GftlniidtPGlie 99 (328)
T TIGR00991 23 TKLLELLGKLKEE--DVSSLTILVMGKGGVGKSSTVNSIIGERVAAVSAFQSEGLRPVLV-SRTRAGFTLNIIDTPGLIE 99 (328)
T ss_pred HHHHHHHHHHHHH--CCCEEEEEEEECCCCCCCHHHHHHHHHHHHHEECCCCCCCCCEEE-EECCCCCEEEEECCCCCCC
T ss_conf 8999987422121--003367888606876631012233320232000000258863266-5124661577532786101
Q ss_pred CCHHHHH--HHHHHHHHHHHHHCCEEECC
Q ss_conf 4103566--66788899850301102013
Q gi|254780809|r 280 TDDIVEK--EGIKRTFLEVENADLILLLK 306 (440)
Q Consensus 280 t~d~IE~--~GI~ra~~~i~~aDlil~v~ 306 (440)
.. -|.. .-|-|..-.-..-|++|||-
T Consensus 100 GG-y~n~~a~~iik~fll~~tidvllyvd 127 (328)
T TIGR00991 100 GG-YINDQAVNIIKRFLLDKTIDVLLYVD 127 (328)
T ss_pred CC-CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 53-03378999999988531212210012
No 345
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.11 E-value=0.0011 Score=45.25 Aligned_cols=117 Identities=23% Similarity=0.236 Sum_probs=58.7
Q ss_pred HHHCCCEEEECCCCCCHHHHHHHHHCC--------HHCCCC-C---------------CCCCC-------EEECCCCCCC
Q ss_conf 320230243114663188899998552--------000234-5---------------46872-------1100012456
Q gi|254780809|r 216 IRNGYKIVILGHSNAGKSSLFNALAKK--------DVAIVT-D---------------IPGTT-------RDVLTIDLDL 264 (440)
Q Consensus 216 l~~g~~v~i~G~pN~GKSSL~N~L~~~--------~~aIVs-~---------------~~GTT-------RD~i~~~~~i 264 (440)
+..|-.++++|||-|||+|-+=.|.-+ +.+++| | +-|-- .|.-..--.+
T Consensus 173 ~~~ggV~alVGPTGVGKTTTiAKLAAr~~l~~g~~kVaLIT~DTYRIgAvEQLktYa~IlgvPv~vv~~~~eL~~aL~~l 252 (404)
T PRK06995 173 MERGGVFALVGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILGVPVHAVKDAADLRLALAEL 252 (404)
T ss_pred HCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHH
T ss_conf 11475589866888763758999999999983898379997687547899999999987595599959999999999970
Q ss_pred CCEEEEEEECCHHCCCCHH--HHHHHHHHHHHHHHHHCCEEECCCCCCH-HHHH-HH---CC-CCCCCCCCCCCCCCCCC
Q ss_conf 8358999508100024103--5666678889985030110201358985-6634-31---28-98532222333446542
Q gi|254780809|r 265 EGYLVKISDTAGIRETDDI--VEKEGIKRTFLEVENADLILLLKEINSK-KEIS-FP---KN-IDFIFIGTKSDLYSTYT 336 (440)
Q Consensus 265 ~g~~~~l~DTaGir~t~d~--IE~~GI~ra~~~i~~aDlil~v~D~~~~-~~~~-~~---~~-~~~i~V~NK~Dl~~~~~ 336 (440)
.+..+.|+||||. ...|. +|+.. .+.......-+++|+.++.+ .+.. .. .. ...=++++|.|-.....
T Consensus 253 ~~~dlILIDTaGr-s~rD~~~~e~l~---~l~~~~~~~~~~LVLsat~~~~dl~~i~~~f~~~~~~~~I~TKLDEt~~~G 328 (404)
T PRK06995 253 RNKHIVLIDTVGM-SQRDRMVSEQIA---MLHGAGAPVQRLLLLNATSHGDTLNEVVQAYRGPGLAGCILTKLDEAASLG 328 (404)
T ss_pred CCCCEEEEECCCC-CCCCHHHHHHHH---HHHHCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCHH
T ss_conf 8999999809998-976888999999---997357885289997798999999999998446999839983040679723
No 346
>cd01849 YlqF_related_GTPase YlqF-related GTPases. These proteins are found in bacteria, eukaryotes, and archaea. They all exhibit a circular permutation of the GTPase signature motifs so that the order of the conserved G box motifs is G4-G5-G1-G2-G3, with G4 and G5 being permuted from the C-terminal region of proteins in the Ras superfamily to the N-terminus of YlqF-related GTPases.
Probab=97.07 E-value=0.00049 Score=47.77 Aligned_cols=65 Identities=22% Similarity=0.286 Sum_probs=45.9
Q ss_pred CCEEECCCCCCH-----HHH-HH---HCCCCCCCCCCCCCCCCCCCHH------------HHHHHHHHHHHHHHHHHHHH
Q ss_conf 110201358985-----663-43---1289853222233344654200------------00013333232358999999
Q gi|254780809|r 300 DLILLLKEINSK-----KEI-SF---PKNIDFIFIGTKSDLYSTYTEE------------YDHLISSFTGEGLEELINKI 358 (440)
Q Consensus 300 Dlil~v~D~~~~-----~~~-~~---~~~~~~i~V~NK~Dl~~~~~~~------------~~~~ISaktg~Gi~~L~~~I 358 (440)
|+|++|+|+..+ .++ .. ..++|+|+|+||+|+.+..... ..+.+|++++.|++.+.+.+
T Consensus 1 D~il~VvDaR~pl~~~~~~~~~~l~~~~~K~~ilvlNK~Dl~~~~~~~~w~~~~~~~~~~~~~~~S~~~~~~~~~~~~~~ 80 (155)
T cd01849 1 DVILEVLDARDPLGTRSPDIERVLIKEKGKKLILVLNKADLVPKEVLRKWLAYLRHSYPTIPFKISATNGQGIEKKESAF 80 (155)
T ss_pred CEEEEEEECCCCCCCCCHHHHHHHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCCEEEHHHCCCCCHHHHHHHH
T ss_conf 98999996879999889999999986589948999767345898999999999996299851671102674568899999
Q ss_pred HHHHHH
Q ss_conf 999632
Q gi|254780809|r 359 KSILSN 364 (440)
Q Consensus 359 ~~~l~~ 364 (440)
...+..
T Consensus 81 ~~~~~~ 86 (155)
T cd01849 81 TKQTNS 86 (155)
T ss_pred HHHHHH
T ss_conf 987156
No 347
>KOG0097 consensus
Probab=97.05 E-value=0.003 Score=42.33 Aligned_cols=130 Identities=28% Similarity=0.425 Sum_probs=78.2
Q ss_pred CCCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCC------CEEECCCCCCCCCEEEEEEECCHHCCCCHHHHHH-HHHH
Q ss_conf 23024311466318889999855200023454687------2110001245683589995081000241035666-6788
Q gi|254780809|r 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGT------TRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKE-GIKR 291 (440)
Q Consensus 219 g~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GT------TRD~i~~~~~i~g~~~~l~DTaGir~t~d~IE~~-GI~r 291 (440)
-++..|+|.-.||||-|+..+..++- ..|-|.| || +||. .-..++..+.||||- |+. .+
T Consensus 11 ifkyiiigdmgvgkscllhqftekkf--madcphtigvefgtr-iiev--sgqkiklqiwdtagq-------erfrav-- 76 (215)
T KOG0097 11 IFKYIIIGDMGVGKSCLLHQFTEKKF--MADCPHTIGVEFGTR-IIEV--SGQKIKLQIWDTAGQ-------ERFRAV-- 76 (215)
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHHH--HHCCCCCCCEECCEE-EEEE--ECCEEEEEEEECCCH-------HHHHHH--
T ss_conf 47788872465547788888877677--505985240312306-9996--074899997313257-------989998--
Q ss_pred HHHHHHHHCCEEECCCCCCHHH-------HHHHC-----CCCCCCCCCCCCCCCCCCHHHH-------------HHHHHH
Q ss_conf 8998503011020135898566-------34312-----8985322223334465420000-------------013333
Q gi|254780809|r 292 TFLEVENADLILLLKEINSKKE-------ISFPK-----NIDFIFIGTKSDLYSTYTEEYD-------------HLISSF 346 (440)
Q Consensus 292 a~~~i~~aDlil~v~D~~~~~~-------~~~~~-----~~~~i~V~NK~Dl~~~~~~~~~-------------~~ISak 346 (440)
+...-..|--.|.|.|.+.... +...+ +.-++++.||.||-......+. ..-|||
T Consensus 77 trsyyrgaagalmvyditrrstynhlsswl~dar~ltnpnt~i~lignkadle~qrdv~yeeak~faeengl~fle~sak 156 (215)
T KOG0097 77 TRSYYRGAAGALMVYDITRRSTYNHLSSWLTDARNLTNPNTVIFLIGNKADLESQRDVTYEEAKEFAEENGLMFLEASAK 156 (215)
T ss_pred HHHHHCCCCCEEEEEEEHHHHHHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHHHCCCCHHHHHHHHHHCCEEEEEECCC
T ss_conf 89886066650689974113346668888865341489971899965611144503786899998887559089981232
Q ss_pred HHHHHHH-HHHHHHHHH
Q ss_conf 2323589-999999996
Q gi|254780809|r 347 TGEGLEE-LINKIKSIL 362 (440)
Q Consensus 347 tg~Gi~~-L~~~I~~~l 362 (440)
||.+++. ++++-.+..
T Consensus 157 tg~nvedafle~akkiy 173 (215)
T KOG0097 157 TGQNVEDAFLETAKKIY 173 (215)
T ss_pred CCCCHHHHHHHHHHHHH
T ss_conf 36766899999999999
No 348
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.04 E-value=0.0013 Score=44.76 Aligned_cols=115 Identities=27% Similarity=0.242 Sum_probs=56.7
Q ss_pred HCCCEEEECCCCCCHHHHHHHHHC------CHHCCCC-C---------------CCCCC----EE--ECCCCC-CC---C
Q ss_conf 023024311466318889999855------2000234-5---------------46872----11--000124-56---8
Q gi|254780809|r 218 NGYKIVILGHSNAGKSSLFNALAK------KDVAIVT-D---------------IPGTT----RD--VLTIDL-DL---E 265 (440)
Q Consensus 218 ~g~~v~i~G~pN~GKSSL~N~L~~------~~~aIVs-~---------------~~GTT----RD--~i~~~~-~i---~ 265 (440)
+--.||++||+.|||.|-+-.|.. ++.+++| | +-|.. +| -++..+ .+ .
T Consensus 240 ~~q~IALVGPTGVGKTTTIAKLAArf~~~~KkVALITtDTYRIGAVEQLKTYAeIMgVPV~VV~dp~eL~~AL~~lkdka 319 (436)
T PRK11889 240 EVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEA 319 (436)
T ss_pred HCEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHHHHHCCCEEEECCHHHHHHHHHHHHHCC
T ss_conf 17179998999988899999999998616980899980663476999999999984994399688899999999876336
Q ss_pred CEEEEEEECCHHCCCCH--HHHHHHHHHHHHHHHHHCCEEECCCCCCH-HHHH-H---HCCC-CCCCCCCCCCCCCCCC
Q ss_conf 35899950810002410--35666678889985030110201358985-6634-3---1289-8532222333446542
Q gi|254780809|r 266 GYLVKISDTAGIRETDD--IVEKEGIKRTFLEVENADLILLLKEINSK-KEIS-F---PKNI-DFIFIGTKSDLYSTYT 336 (440)
Q Consensus 266 g~~~~l~DTaGir~t~d--~IE~~GI~ra~~~i~~aDlil~v~D~~~~-~~~~-~---~~~~-~~i~V~NK~Dl~~~~~ 336 (440)
+..+.|+||||- ...| .++.+ ..-+.. ...+-+.+|+.++.+ .+.. . -... ..=++++|.|-.....
T Consensus 320 ~~DLILIDTAGR-S~RD~~~I~EL--~~~l~~-~~p~ev~LVLSATTK~~DL~eIi~rF~~l~idglIfTKLDET~SlG 394 (436)
T PRK11889 320 RVDYILIDTAGK-NYRASETVEEM--IETMGQ-VEPDYICLTLSASMKSKDMIEIITNFKDIHIDGIVFTKFDETASSG 394 (436)
T ss_pred CCCEEEEECCCC-CCCCHHHHHHH--HHHHHH-CCCCEEEEEEECCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCCH
T ss_conf 888899929898-84689999999--999851-2777169999788998999999997257998828997132568703
No 349
>KOG0072 consensus
Probab=97.03 E-value=0.0015 Score=44.42 Aligned_cols=95 Identities=16% Similarity=0.224 Sum_probs=60.6
Q ss_pred CCCCCCCEEEEEEECCHHCCCCHHHHHHHHHHH-HHHHHHHCCEEECCCCCCHHHHHH-------------HCCCCCCCC
Q ss_conf 124568358999508100024103566667888-998503011020135898566343-------------128985322
Q gi|254780809|r 260 IDLDLEGYLVKISDTAGIRETDDIVEKEGIKRT-FLEVENADLILLLKEINSKKEISF-------------PKNIDFIFI 325 (440)
Q Consensus 260 ~~~~i~g~~~~l~DTaGir~t~d~IE~~GI~ra-~~~i~~aDlil~v~D~~~~~~~~~-------------~~~~~~i~V 325 (440)
+.+...+.++.+-|.-|-.. |+-- ...-.+.|-++||+|.++.+.+.. +.+..++++
T Consensus 55 e~v~yKNLk~~vwdLggqtS---------irPyWRcYy~dt~avIyVVDssd~dris~a~~el~~mL~E~eLq~a~llv~ 125 (182)
T KOG0072 55 ETVPYKNLKFQVWDLGGQTS---------IRPYWRCYYADTDAVIYVVDSSDRDRISIAGVELYSMLQEEELQHAKLLVF 125 (182)
T ss_pred CCCCCCCCCCEEEECCCCCC---------CCHHHHHHHCCCCEEEEEEECCCHHHHHHHHHHHHHHHCCHHHCCCEEEEE
T ss_conf 21553665512467158643---------327788876066628999716543443146899999855486548469998
Q ss_pred CCCCCCCCCCCH----------------HHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 223334465420----------------00001333323235899999999963
Q gi|254780809|r 326 GTKSDLYSTYTE----------------EYDHLISSFTGEGLEELINKIKSILS 363 (440)
Q Consensus 326 ~NK~Dl~~~~~~----------------~~~~~ISaktg~Gi~~L~~~I~~~l~ 363 (440)
.||.|....... ...+..||.+|+|+|.-.+-+...+.
T Consensus 126 anKqD~~~~~t~~E~~~~L~l~~Lk~r~~~Iv~tSA~kg~Gld~~~DWL~~~l~ 179 (182)
T KOG0072 126 ANKQDYSGALTRSEVLKMLGLQKLKDRIWQIVKTSAVKGEGLDPAMDWLQRPLK 179 (182)
T ss_pred ECCCCCHHHHHHHHHHHHHCHHHHHHHEEEEEEECCCCCCCCCHHHHHHHHHHH
T ss_conf 604552135569999998482887502268876011446677678999987776
No 350
>KOG0468 consensus
Probab=97.02 E-value=0.00099 Score=45.66 Aligned_cols=105 Identities=19% Similarity=0.246 Sum_probs=65.8
Q ss_pred CCEEEECCCCCCHHHHHHHHHCCHHCCC---C----CCCCCCEEECCCCCCC--------------CCEEEEEEECCHHC
Q ss_conf 3024311466318889999855200023---4----5468721100012456--------------83589995081000
Q gi|254780809|r 220 YKIVILGHSNAGKSSLFNALAKKDVAIV---T----DIPGTTRDVLTIDLDL--------------EGYLVKISDTAGIR 278 (440)
Q Consensus 220 ~~v~i~G~pN~GKSSL~N~L~~~~~aIV---s----~~~GTTRD~i~~~~~i--------------~g~~~~l~DTaGir 278 (440)
..|+++|.--.||++|+..|..+--.=. . .++-|+-.-.+..+.| ..+.+.++||||--
T Consensus 129 rnV~l~GhLhhGKT~l~D~Lv~~tHp~~~~~~e~~lrytD~l~~E~eRg~sIK~~p~Tl~l~D~~~KS~l~nilDTPGHV 208 (971)
T KOG0468 129 RNVGLVGHLHHGKTALMDLLVEQTHPDFSKNTEADLRYTDTLFYEQERGCSIKSTPVTLVLSDSKGKSYLMNILDTPGHV 208 (971)
T ss_pred EEEEEEECCCCCHHHHHHHHCEECCCCCCCCCCCCCCCCCCCHHHHHCCCEEEECCEEEEEECCCCCEEEEEEECCCCCC
T ss_conf 99988611456715787763131346555542356313664245675485676132289985676724335552588755
Q ss_pred CCCHHHHHHHHHHHHHHHHHHCCEEECCCCCCHHH--------HHHHCCCCCCCCCCCCCCC
Q ss_conf 24103566667888998503011020135898566--------3431289853222233344
Q gi|254780809|r 279 ETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE--------ISFPKNIDFIFIGTKSDLY 332 (440)
Q Consensus 279 ~t~d~IE~~GI~ra~~~i~~aDlil~v~D~~~~~~--------~~~~~~~~~i~V~NK~Dl~ 332 (440)
+-.|+ +-..+..+|.+++++|+-+.-. ....++.++.+|+||.|..
T Consensus 209 nF~DE--------~ta~l~~sDgvVlvvDv~EGVmlntEr~ikhaiq~~~~i~vviNKiDRL 262 (971)
T KOG0468 209 NFSDE--------TTASLRLSDGVVLVVDVAEGVMLNTERIIKHAIQNRLPIVVVINKVDRL 262 (971)
T ss_pred CCHHH--------HHHHHHHCCEEEEEEECCCCCEEEHHHHHHHHHHCCCCEEEEEEHHHHH
T ss_conf 50688--------8888652363799998225705209999999874267679997416789
No 351
>PTZ00243 ABC transporter; Provisional
Probab=97.01 E-value=0.00076 Score=46.45 Aligned_cols=26 Identities=35% Similarity=0.593 Sum_probs=16.6
Q ss_pred HHCCCEEEECCCCCCHHHHHHHHHCC
Q ss_conf 20230243114663188899998552
Q gi|254780809|r 217 RNGYKIVILGHSNAGKSSLFNALAKK 242 (440)
Q Consensus 217 ~~g~~v~i~G~pN~GKSSL~N~L~~~ 242 (440)
..|--++|+|+.-+|||||+.+|+|+
T Consensus 684 ~~G~L~~IvG~vGSGKSSLL~aiLGE 709 (1560)
T PTZ00243 684 PRGKLTVVLGATGSGKSTLLQSLLSQ 709 (1560)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHCC
T ss_conf 59978999899998799999999688
No 352
>KOG0090 consensus
Probab=97.00 E-value=0.00045 Score=48.06 Aligned_cols=107 Identities=22% Similarity=0.300 Sum_probs=65.6
Q ss_pred CCCEEEECCCCCCHHHHHHHHHCC-HHCCCCCCCCCCEEECCCCCCCCCEEEEEEECCHHCCCCHHHHHHHHHHHHHHHH
Q ss_conf 230243114663188899998552-0002345468721100012456835899950810002410356666788899850
Q gi|254780809|r 219 GYKIVILGHSNAGKSSLFNALAKK-DVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVE 297 (440)
Q Consensus 219 g~~v~i~G~pN~GKSSL~N~L~~~-~~aIVs~~~GTTRD~i~~~~~i~g~~~~l~DTaGir~t~d~IE~~GI~ra~~~i~ 297 (440)
+..|.++|+.|.||+|||-.|... .+.-|+++. ..++...++...++|+|-||=-.-.. +-.+...
T Consensus 38 ~~~Vll~Gl~dSGKT~LF~qL~~gs~~~TvtSie-----pn~a~~r~gs~~~~LVD~PGH~rlR~--------kl~e~~~ 104 (238)
T KOG0090 38 QNAVLLVGLSDSGKTSLFTQLITGSHRGTVTSIE-----PNEATYRLGSENVTLVDLPGHSRLRR--------KLLEYLK 104 (238)
T ss_pred CCCEEEEECCCCCCEEEEEEHHCCCCCCEEEEEC-----CCEEEEEECCCCEEEEECCCCHHHHH--------HHHHHCC
T ss_conf 8868999327898335542001387367032104-----66135763686238875799588999--------9998734
Q ss_pred ---HHCCEEECCCCCC--HH-----H--HH-------HHCCCCCCCCCCCCCCCCCCCHH
Q ss_conf ---3011020135898--56-----6--34-------31289853222233344654200
Q gi|254780809|r 298 ---NADLILLLKEINS--KK-----E--IS-------FPKNIDFIFIGTKSDLYSTYTEE 338 (440)
Q Consensus 298 ---~aDlil~v~D~~~--~~-----~--~~-------~~~~~~~i~V~NK~Dl~~~~~~~ 338 (440)
.+--|+||+|... ++ + +. ..+..|+++..||.|+.-....+
T Consensus 105 ~~~~akaiVFVVDSa~f~k~vrdvaefLydil~~~~~~~~~~~vLIaCNKqDl~tAkt~~ 164 (238)
T KOG0090 105 HNYSAKAIVFVVDSATFLKNVRDVAEFLYDILLDSRVKKNKPPVLIACNKQDLFTAKTAE 164 (238)
T ss_pred CCCCCEEEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCCCEEEEECCHHHHHCCCHH
T ss_conf 655221599998332246006799999999998601234799889995552232138599
No 353
>cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another.
Probab=96.99 E-value=0.00082 Score=46.24 Aligned_cols=51 Identities=22% Similarity=0.302 Sum_probs=37.9
Q ss_pred HHHCCCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCCEEECCCCCCCCCEEEEEEECCHHC
Q ss_conf 320230243114663188899998552000234546872110001245683589995081000
Q gi|254780809|r 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278 (440)
Q Consensus 216 l~~g~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTTRD~i~~~~~i~g~~~~l~DTaGir 278 (440)
+..|-+|+|+|+.-+|||||++.|+|-.. +. ++.+.++|.++.-+|..-+|
T Consensus 26 i~~G~~iaIvG~sGsGKSTLl~ll~gl~~----p~--------~G~I~idg~~i~~~~~~~~r 76 (238)
T cd03249 26 IPPGKTVALVGSSGCGKSTVVSLLERFYD----PT--------SGEILLDGVDIRDLNLRWLR 76 (238)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHHHCCC----CC--------CCEEEECCEECCCCCHHHHH
T ss_conf 76999999999999989999999823861----88--------51899999992318999997
No 354
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.97 E-value=0.0048 Score=40.93 Aligned_cols=118 Identities=24% Similarity=0.297 Sum_probs=60.9
Q ss_pred HHHHCCCEEEECCCCCCHHHHHHHHHCC--------HHCCCC-C---------------CCCCCE-------EECCCCCC
Q ss_conf 4320230243114663188899998552--------000234-5---------------468721-------10001245
Q gi|254780809|r 215 IIRNGYKIVILGHSNAGKSSLFNALAKK--------DVAIVT-D---------------IPGTTR-------DVLTIDLD 263 (440)
Q Consensus 215 ~l~~g~~v~i~G~pN~GKSSL~N~L~~~--------~~aIVs-~---------------~~GTTR-------D~i~~~~~ 263 (440)
.+..|=.++++||+-|||.|-+-.|.-+ +.++|| | |-|..- |.-..--.
T Consensus 344 ~~~~gGv~AlvGpTGvGKTTT~aKlAa~~~~~~g~~~valit~DtyRiga~eQL~~y~~ilgvpv~~~~~~~~l~~~l~~ 423 (557)
T PRK12727 344 PLERGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLER 423 (557)
T ss_pred HHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHHHCCEEEEECCHHHHHHHHHH
T ss_conf 15407647874377767311799999999997399818999726640879999999999839757982899999999998
Q ss_pred CCCEEEEEEECCHHCCCCH-HHHHHHHHHHHHHHHHHCCEEECCCCCC-HHHHH----HHCC-CCCCCCCCCCCCCCCCC
Q ss_conf 6835899950810002410-3566667888998503011020135898-56634----3128-98532222333446542
Q gi|254780809|r 264 LEGYLVKISDTAGIRETDD-IVEKEGIKRTFLEVENADLILLLKEINS-KKEIS----FPKN-IDFIFIGTKSDLYSTYT 336 (440)
Q Consensus 264 i~g~~~~l~DTaGir~t~d-~IE~~GI~ra~~~i~~aDlil~v~D~~~-~~~~~----~~~~-~~~i~V~NK~Dl~~~~~ 336 (440)
+.+..+.|+||||...-+. ..|+. ..+.......-+ +|+.++. ...+. .... ...=+|++|.|-.....
T Consensus 424 l~~~~lvliDTaG~~~rd~~~~~~~---~~l~~~~~~~~~-Lvl~a~~~~~~l~~~~~~~~~~~~~~~i~TKlDE~~~~G 499 (557)
T PRK12727 424 LRDYKLVLIDTAGMGQRDRALAAQL---NWLRAARQVTSL-LVLPANAHFSDLDEVVRRFAHAKPQGVVLTKLDETGRFG 499 (557)
T ss_pred HCCCCEEEEECCCCCCCCHHHHHHH---HHHHCCCCCCEE-EEEECCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCCCC
T ss_conf 3699989994999884699999999---987514776359-999688998999999998537998748996143678703
No 355
>PRK00300 gmk guanylate kinase; Provisional
Probab=96.96 E-value=0.0008 Score=46.32 Aligned_cols=60 Identities=28% Similarity=0.392 Sum_probs=47.3
Q ss_pred HHHCCCEEEECCCCCCHHHHHHHHHCCHHC-CCCCCCCCCEEECCCCCCCCCEEEEEEECCHH
Q ss_conf 320230243114663188899998552000-23454687211000124568358999508100
Q gi|254780809|r 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVA-IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277 (440)
Q Consensus 216 l~~g~~v~i~G~pN~GKSSL~N~L~~~~~a-IVs~~~GTTRD~i~~~~~i~g~~~~l~DTaGi 277 (440)
.+.|.-|+|+||+.|||+||++.|+..... +...++-|||-.-.. +.+|..+.|++..-+
T Consensus 4 ~~~g~livisGPSG~GK~tl~~~L~~~~p~~~~~~vs~TTR~pR~~--E~dG~dY~Fvs~eeF 64 (208)
T PRK00300 4 MRRGLLIVLSAPSGAGKSTLVRALLERDPNDLQLSVSATTRAPRPG--EVDGVHYHFVSREEF 64 (208)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHCCCCEEEEEEEECCCCCCC--CCCCCEEEEECHHHH
T ss_conf 4188389999999889999999999729986899897468898998--778965799619999
No 356
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.95 E-value=0.011 Score=38.55 Aligned_cols=109 Identities=23% Similarity=0.427 Sum_probs=60.2
Q ss_pred CHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHCC------HHCCCCC-------------------CC--
Q ss_conf 00112123332234554320230243114663188899998552------0002345-------------------46--
Q gi|254780809|r 199 LKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKK------DVAIVTD-------------------IP-- 251 (440)
Q Consensus 199 i~~~l~~ll~~~~~~~~l~~g~~v~i~G~pN~GKSSL~N~L~~~------~~aIVs~-------------------~~-- 251 (440)
+..+|.+++.... ........|.++|.--+||+|-.-.|... +..+|+- +|
T Consensus 79 v~~eL~~llg~~~--~~~~kP~Vim~vGlqGsGKTTT~aKLA~~~kk~g~kv~lvaaDt~RpaA~eQL~~la~~~~v~~~ 156 (433)
T PRK00771 79 VYEELVKLLGEEA--EILLKPQTILLVGLQGSGKTTTAAKLARYFQKKGLKVGVICADTWRPGAYEQLKQLCEKINVPFY 156 (433)
T ss_pred HHHHHHHHHCCCC--CCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHCCCCCC
T ss_conf 9999999849676--56689858999737889789999999999997799467850678836899999999986388731
Q ss_pred -C-CCEEECCC---CC-CCCCEEEEEEECCHHCCCC-HHHHHHHHHHHHHHHHHHCCEEECCCCCCHH
Q ss_conf -8-72110001---24-5683589995081000241-0356666788899850301102013589856
Q gi|254780809|r 252 -G-TTRDVLTI---DL-DLEGYLVKISDTAGIRETD-DIVEKEGIKRTFLEVENADLILLLKEINSKK 312 (440)
Q Consensus 252 -G-TTRD~i~~---~~-~i~g~~~~l~DTaGir~t~-d~IE~~GI~ra~~~i~~aDlil~v~D~~~~~ 312 (440)
+ ...|.++. .+ ...++.+.++||||=...+ +..+.+ +.++.+-..|-+|+|+|+..-+
T Consensus 157 ~~~~~~dp~~i~~~a~~~~k~~DvviiDTAGRl~~d~~Lm~El---~~i~~~~~P~e~llV~Da~~GQ 221 (433)
T PRK00771 157 GDPKEKDAVKIVKEGLEKLKKVDVIIVDTAGRHKLEKDLIEEM---KQIKEITKPDEVILVIDATIGQ 221 (433)
T ss_pred CCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCCHHHHHHH---HHHHHHHCCCEEEEEEECCCCH
T ss_conf 7889999999999999984569889997765210409999999---9998775797689986544226
No 357
>PRK10867 signal recognition particle protein; Provisional
Probab=96.93 E-value=0.03 Score=35.41 Aligned_cols=113 Identities=19% Similarity=0.280 Sum_probs=61.2
Q ss_pred CCCHHHHHHHHHHHHHHHHHH-HCC-CEEEECCCCCCHHHHHHHHHCC-----H--HCCCC-CC--CC------------
Q ss_conf 100011212333223455432-023-0243114663188899998552-----0--00234-54--68------------
Q gi|254780809|r 197 LFLKNDISSHISQGKLGEIIR-NGY-KIVILGHSNAGKSSLFNALAKK-----D--VAIVT-DI--PG------------ 252 (440)
Q Consensus 197 ~~i~~~l~~ll~~~~~~~~l~-~g~-~v~i~G~pN~GKSSL~N~L~~~-----~--~aIVs-~~--~G------------ 252 (440)
.-+..+|.+++......-.+. .++ .|.++|.--+||+|-.-.|... . ..+|+ |. |+
T Consensus 76 kiv~~eL~~lLg~~~~~l~~~~~~p~VIm~vGLqGsGKTTT~aKLA~~lk~k~~k~vllvaaDt~RpaA~eQL~~la~~~ 155 (453)
T PRK10867 76 KIVRNELVAAMGEENQTLNLAAQPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVYRPAAIKQLETLAEQV 155 (453)
T ss_pred HHHHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHC
T ss_conf 99999999985888766633789996999974688851858999999999738983798558877058999999999851
Q ss_pred --------CCEEECC---C---CCCCCCEEEEEEECCHHCCCC-HHHHHHHHHHHHHHHHHHCCEEECCCCCCHH
Q ss_conf --------7211000---1---245683589995081000241-0356666788899850301102013589856
Q gi|254780809|r 253 --------TTRDVLT---I---DLDLEGYLVKISDTAGIRETD-DIVEKEGIKRTFLEVENADLILLLKEINSKK 312 (440)
Q Consensus 253 --------TTRD~i~---~---~~~i~g~~~~l~DTaGir~t~-d~IE~~GI~ra~~~i~~aDlil~v~D~~~~~ 312 (440)
+.-|.+. . ...-+++.+.|+||||=...+ +..+.+ + ..+.+-+.|-+|+|+|+..-+
T Consensus 156 ~v~~~~~~~~~dp~~ia~~a~~~ak~~~~DvvivDTAGRl~~d~~Lm~El--~-~i~~~~~P~e~llV~Da~~GQ 227 (453)
T PRK10867 156 GVDFFPSDVGQKPVDIVNAALKEAKLKFYDVLLVDTAGRLHVDEAMMDEI--K-QVHASINPVETLFVVDAMTGQ 227 (453)
T ss_pred CCCEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCHHCCHHHHHHH--H-HHHHHHCCCCEEEEEECCCCH
T ss_conf 98043678899889999999999997799999997876012108889999--9-998763787137974322356
No 358
>TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein; InterPro: IPR011918 This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins ..
Probab=96.91 E-value=0.00043 Score=48.18 Aligned_cols=53 Identities=32% Similarity=0.452 Sum_probs=45.7
Q ss_pred HHHHCCCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCCEEECCCCCCCCCEEEEEEECCHHCC
Q ss_conf 43202302431146631888999985520002345468721100012456835899950810002
Q gi|254780809|r 215 IIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279 (440)
Q Consensus 215 ~l~~g~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTTRD~i~~~~~i~g~~~~l~DTaGir~ 279 (440)
.++.|=+||||||.-|||||||.-|+... |+-++.+-++|++++=.|-.=+|+
T Consensus 362 ~v~PGEtvAlVGPSGAGKSTlf~LLLRFY------------DP~~G~ilLDGvd~r~~dP~~lR~ 414 (576)
T TIGR02204 362 TVRPGETVALVGPSGAGKSTLFQLLLRFY------------DPQSGRILLDGVDIRDLDPADLRA 414 (576)
T ss_pred EECCCCEEEEECCCCCHHHHHHHHHHHCC------------CCCCCEEEECCCCHHHCCCHHHHH
T ss_conf 56277658876688762799999998604------------888765774664140168087883
No 359
>KOG0071 consensus
Probab=96.88 E-value=0.0037 Score=41.71 Aligned_cols=127 Identities=17% Similarity=0.289 Sum_probs=83.0
Q ss_pred CCCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCCEEECCCCCCCCCEEEEEEECCHHCCCCHHHHHHHHHHHHHH-HH
Q ss_conf 23024311466318889999855200023454687211000124568358999508100024103566667888998-50
Q gi|254780809|r 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE-VE 297 (440)
Q Consensus 219 g~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTTRD~i~~~~~i~g~~~~l~DTaGir~t~d~IE~~GI~ra~~~-i~ 297 (440)
-.+++.+|..-+||.|++-.|.-.. +|+.+|- ...--+.+.+.++.+..-|..|- |.| +.-+.+ -.
T Consensus 17 E~~ilmlGLd~aGKTtiLyKLkl~~--~~~~ipT--vGFnvetVtykN~kfNvwdvGGq----d~i-----RplWrhYy~ 83 (180)
T KOG0071 17 EMRILMLGLDAAGKTTILYKLKLGQ--SVTTIPT--VGFNVETVTYKNVKFNVWDVGGQ----DKI-----RPLWRHYYT 83 (180)
T ss_pred CCEEEEEECCCCCCEEHHHHHHCCC--CCCCCCC--CCEEEEEEEEEEEEEEEEECCCC----HHH-----HHHHHHHCC
T ss_conf 0217888126688400346876289--7640355--42047777730068852122671----220-----488986356
Q ss_pred HHCCEEECCCCCCHHHHHH-------------HCCCCCCCCCCCCCCCCCCCHHHH----------------HHHHHHHH
Q ss_conf 3011020135898566343-------------128985322223334465420000----------------01333323
Q gi|254780809|r 298 NADLILLLKEINSKKEISF-------------PKNIDFIFIGTKSDLYSTYTEEYD----------------HLISSFTG 348 (440)
Q Consensus 298 ~aDlil~v~D~~~~~~~~~-------------~~~~~~i~V~NK~Dl~~~~~~~~~----------------~~ISaktg 348 (440)
...-++||+|..+.+.++. +.+.++++..||-|+.....+... ..-+|.+|
T Consensus 84 gtqglIFV~Dsa~~dr~eeAr~ELh~ii~~~em~~~~~LvlANkQDlp~A~~pqei~d~leLe~~r~~~W~vqp~~a~~g 163 (180)
T KOG0071 84 GTQGLIFVVDSADRDRIEEARNELHRIINDREMRDAIILILANKQDLPDAMKPQEIQDKLELERIRDRNWYVQPSCALSG 163 (180)
T ss_pred CCCEEEEEEECCCCCHHHHHHHHHHHHHCCHHHHCCEEEEEECCCCCCCCCCHHHHHHHHCCCCCCCCCCEEECCCCCCH
T ss_conf 77259999824321049999999999857876612058988546655221698998887542312699606603534440
Q ss_pred HHHHHHHHHH
Q ss_conf 2358999999
Q gi|254780809|r 349 EGLEELINKI 358 (440)
Q Consensus 349 ~Gi~~L~~~I 358 (440)
+|+.+=..-+
T Consensus 164 dgL~eglswl 173 (180)
T KOG0071 164 DGLKEGLSWL 173 (180)
T ss_pred HHHHHHHHHH
T ss_conf 2788899999
No 360
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=96.87 E-value=0.0019 Score=43.74 Aligned_cols=46 Identities=7% Similarity=0.129 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEHHHHHHHHHHHHHH
Q ss_conf 3333232358999999999632203588632014899999999999
Q gi|254780809|r 343 ISSFTGEGLEELINKIKSILSNKFKKLPFSIPSHKRHLYHLSQTVR 388 (440)
Q Consensus 343 ISaktg~Gi~~L~~~I~~~l~~~~~~~~~~i~~~~Rq~~~L~~a~~ 388 (440)
..|....++.+.+..+-+-+..........+..-+||+-+|.+|+-
T Consensus 1330 ~~A~k~Ani~dfI~sLP~G~dT~Vge~G~nLSgGQKQrIaIARALL 1375 (1467)
T PTZ00265 1330 KRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALL 1375 (1467)
T ss_pred HHHHHHCCCHHHHHHCCCCCCCEECCCCCCCCHHHHHHHHHHHHHH
T ss_conf 9999874888898636665588626999336999999999999997
No 361
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.86 E-value=0.0019 Score=43.65 Aligned_cols=48 Identities=23% Similarity=0.322 Sum_probs=35.2
Q ss_pred HHHCCCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCCEEECCCCCCCCCEEEEEEECC
Q ss_conf 320230243114663188899998552000234546872110001245683589995081
Q gi|254780809|r 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275 (440)
Q Consensus 216 l~~g~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTTRD~i~~~~~i~g~~~~l~DTa 275 (440)
+..|-+|+|+|+.-+|||||++.|+|.-. +. ++.+.++|.++.=++..
T Consensus 26 i~~Ge~vaivG~sGsGKSTLl~ll~gl~~----p~--------~G~I~idg~~i~~~~~~ 73 (229)
T cd03254 26 IKPGETVAIVGPTGAGKTTLINLLMRFYD----PQ--------KGQILIDGIDIRDISRK 73 (229)
T ss_pred ECCCCEEEEECCCCCHHHHHHHHHHCCCC----CC--------CCEEEECCEECCCCCHH
T ss_conf 87999999999999809999999966866----78--------73899999995418999
No 362
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=96.86 E-value=0.00094 Score=45.81 Aligned_cols=55 Identities=29% Similarity=0.367 Sum_probs=46.2
Q ss_pred HCCCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCCEEECCCCCCCCCEEEEEEECC
Q ss_conf 0230243114663188899998552000234546872110001245683589995081
Q gi|254780809|r 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275 (440)
Q Consensus 218 ~g~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTTRD~i~~~~~i~g~~~~l~DTa 275 (440)
.|.-++|.||.+||||||+.+|+... .+--.+.-|||..-.+ +.+|+.+.|++..
T Consensus 3 ~G~l~vlsgPSG~GKsTl~k~L~~~~-~l~~SVS~TTR~pR~g--Ev~G~dY~Fvs~~ 57 (191)
T COG0194 3 KGLLIVLSGPSGVGKSTLVKALLEDD-KLRFSVSATTRKPRPG--EVDGVDYFFVTEE 57 (191)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHC-CEEEEEEECCCCCCCC--CCCCCEEEECCHH
T ss_conf 86399998998888899999998634-9379998526799998--7578024757799
No 363
>cd01851 GBP Guanylate-binding protein (GBP), N-terminal domain. Guanylate-binding proteins (GBPs) define a group of proteins that are synthesized after activation of the cell by interferons. The biochemical properties of GBPs are clearly different from those of Ras-like and heterotrimeric GTP-binding proteins. They bind guanine nucleotides with low affinity (micromolar range), are stable in their absence and have a high turnover GTPase. In addition to binding GDP/GTP, they have the unique ability to bind GMP with equal affinity and hydrolyze GTP not only to GDP, but also to GMP. Furthermore, two unique regions around the base and the phosphate-binding areas, the guanine and the phosphate caps, respectively, give the nucleotide-binding site a unique appearance not found in the canonical GTP-binding proteins. The phosphate cap, which constitutes the region analogous to switch I, completely shields the phosphate-binding site from solvent such that a potential GTPase-activating protein
Probab=96.83 E-value=0.0022 Score=43.20 Aligned_cols=59 Identities=25% Similarity=0.235 Sum_probs=38.4
Q ss_pred CEEEECCCCCCHHHHHHHHHCCHHC-CCCC-CCCCCEEECCCC--C-CCCCEEEEEEECCHHCC
Q ss_conf 0243114663188899998552000-2345-468721100012--4-56835899950810002
Q gi|254780809|r 221 KIVILGHSNAGKSSLFNALAKKDVA-IVTD-IPGTTRDVLTID--L-DLEGYLVKISDTAGIRE 279 (440)
Q Consensus 221 ~v~i~G~pN~GKSSL~N~L~~~~~a-IVs~-~~GTTRD~i~~~--~-~i~g~~~~l~DTaGir~ 279 (440)
-|+|+|+-..|||+|+|.|++.... =|.+ .-.||+.+--.. + .=.+..+.++||-|.-.
T Consensus 9 vvsv~G~~rtGKS~LlN~l~~~~~~F~~~~~~~~~T~Giw~~~~p~~~~~~~~~~llDtEG~~~ 72 (224)
T cd01851 9 VVSVFGPQSSGKSFLLNHLFGTLSGFDVMDTSQQTTKGIWMWSVPFKLGKEHAVLLLDTEGTDG 72 (224)
T ss_pred EEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCEEEEEECCCCCC
T ss_conf 9998768989889999999488889874788776565069983563578873389983477776
No 364
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=96.82 E-value=0.0072 Score=39.68 Aligned_cols=116 Identities=25% Similarity=0.237 Sum_probs=57.1
Q ss_pred HCCCEEEECCCCCCHHHHHHHHHCCH--------HCCCC-C---------------CCC-------CCEEECCCCCCCCC
Q ss_conf 02302431146631888999985520--------00234-5---------------468-------72110001245683
Q gi|254780809|r 218 NGYKIVILGHSNAGKSSLFNALAKKD--------VAIVT-D---------------IPG-------TTRDVLTIDLDLEG 266 (440)
Q Consensus 218 ~g~~v~i~G~pN~GKSSL~N~L~~~~--------~aIVs-~---------------~~G-------TTRD~i~~~~~i~g 266 (440)
.+-.|+|+||+-|||.|-+-.|..+- .+|+| | +=| +-.|..++--.+..
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l~~ 281 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEALRD 281 (407)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCHHHHHHHHHHHHHHHCCCEEEECCHHHHHHHHHHHHC
T ss_conf 68579998998875887999999999753257606899714411528999999999869955996399999999998531
Q ss_pred EEEEEEECCHHCCCCHHHHHHHHHHHHHHHHHHCCEEECCCCCCHH-H----HHHHCCCCC-CCCCCCCCCCCCC
Q ss_conf 5899950810002410356666788899850301102013589856-6----343128985-3222233344654
Q gi|254780809|r 267 YLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKK-E----ISFPKNIDF-IFIGTKSDLYSTY 335 (440)
Q Consensus 267 ~~~~l~DTaGir~t~d~IE~~GI~ra~~~i~~aDlil~v~D~~~~~-~----~~~~~~~~~-i~V~NK~Dl~~~~ 335 (440)
..+.|+||||- ...|..-...++.-.... ...-+.+|++++.+. + +......|+ =++++|.|-....
T Consensus 282 ~d~ILVDTaGr-s~~D~~~i~el~~~~~~~-~~i~~~Lvlsat~K~~dlkei~~~f~~~~i~~~I~TKlDET~s~ 354 (407)
T COG1419 282 CDVILVDTAGR-SQYDKEKIEELKELIDVS-HSIEVYLVLSATTKYEDLKEIIKQFSLFPIDGLIFTKLDETTSL 354 (407)
T ss_pred CCEEEEECCCC-CCCCHHHHHHHHHHHHCC-CCCEEEEEEECCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCH
T ss_conf 88899968998-833789999999997035-66217999845764688999999724588661689713356763
No 365
>KOG0467 consensus
Probab=96.79 E-value=0.0026 Score=42.75 Aligned_cols=102 Identities=22% Similarity=0.346 Sum_probs=68.9
Q ss_pred CEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCCE--EECCC-----------CCC--CCCEEEEEEECCHHCCCCHHHH
Q ss_conf 02431146631888999985520002345468721--10001-----------245--6835899950810002410356
Q gi|254780809|r 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTR--DVLTI-----------DLD--LEGYLVKISDTAGIRETDDIVE 285 (440)
Q Consensus 221 ~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTTR--D~i~~-----------~~~--i~g~~~~l~DTaGir~t~d~IE 285 (440)
.+.|+-...-||.||...|+-.+--|-+..+|+-| |+-+. .+. .+++.+.|+|+||--+-..+|-
T Consensus 11 n~~~vahvdhgktsladsl~asngvis~rlagkirfld~redeq~rgitmkss~is~~~~~~~~nlidspghvdf~sevs 90 (887)
T KOG0467 11 NICLVAHVDHGKTSLADSLVASNGVISSRLAGKIRFLDTREDEQTRGITMKSSAISLLHKDYLINLIDSPGHVDFSSEVS 90 (887)
T ss_pred EEEEEEEECCCCCCHHHHHHHHCCEECHHHCCCEEECCCCCHHHHHCEEEECCCCCCCCCCEEEEEECCCCCCCHHHHHH
T ss_conf 89999996488532577787506674153356066210462566616244313111013765899855898645065532
Q ss_pred HHHHHHHHHHHHHHCCEEECCCCCCH---HHH-----HHHCCCCCCCCCCCCC
Q ss_conf 66678889985030110201358985---663-----4312898532222333
Q gi|254780809|r 286 KEGIKRTFLEVENADLILLLKEINSK---KEI-----SFPKNIDFIFIGTKSD 330 (440)
Q Consensus 286 ~~GI~ra~~~i~~aDlil~v~D~~~~---~~~-----~~~~~~~~i~V~NK~D 330 (440)
.+..-+|.-++++|+... ... ...++...++|+||+|
T Consensus 91 --------sas~l~d~alvlvdvvegv~~qt~~vlrq~~~~~~~~~lvinkid 135 (887)
T KOG0467 91 --------SASRLSDGALVLVDVVEGVCSQTYAVLRQAWIEGLKPILVINKID 135 (887)
T ss_pred --------HHHHHCCCCEEEEEECCCCCHHHHHHHHHHHHCCCCEEEEEEHHH
T ss_conf --------666504771899960025455389999999971674599973166
No 366
>PRK10416 cell division protein FtsY; Provisional
Probab=96.79 E-value=0.013 Score=37.84 Aligned_cols=112 Identities=21% Similarity=0.299 Sum_probs=62.5
Q ss_pred CCCEEEECCCCCCHHHHHHHHHCCH------HC-------------------------CCCCCCCCCEEECCCC------
Q ss_conf 2302431146631888999985520------00-------------------------2345468721100012------
Q gi|254780809|r 219 GYKIVILGHSNAGKSSLFNALAKKD------VA-------------------------IVTDIPGTTRDVLTID------ 261 (440)
Q Consensus 219 g~~v~i~G~pN~GKSSL~N~L~~~~------~a-------------------------IVs~~~GTTRD~i~~~------ 261 (440)
...|.++|---+||+|-+-.|..+- .. +++...| .|....-
T Consensus 295 P~VIl~vGvNG~GKTTTigKLA~~~~~~gkkVllaA~DTfRaAAieQL~~w~~r~~v~vi~~~~g--~Dpa~V~~dai~~ 372 (499)
T PRK10416 295 PFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTG--ADSASVIFDAIQA 372 (499)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHHHCCCCCEEEECCCC--CCHHHHHHHHHHH
T ss_conf 87999974787878989999999999779953788406675689999999842457369836899--9979999999999
Q ss_pred CCCCCEEEEEEECCHHCCCC-HHHHHH-HHHHHHHHHH-H-HCCEEECCCCCCHHHH-----HHHCCCCC-CCCCCCCCC
Q ss_conf 45683589995081000241-035666-6788899850-3-0110201358985663-----43128985-322223334
Q gi|254780809|r 262 LDLEGYLVKISDTAGIRETD-DIVEKE-GIKRTFLEVE-N-ADLILLLKEINSKKEI-----SFPKNIDF-IFIGTKSDL 331 (440)
Q Consensus 262 ~~i~g~~~~l~DTaGir~t~-d~IE~~-GI~ra~~~i~-~-aDlil~v~D~~~~~~~-----~~~~~~~~-i~V~NK~Dl 331 (440)
..-.|+.+.|+||||=..++ +..+.+ -|.|..+... . -+-+|+|+|++..... .+.+..++ =+|++|.|=
T Consensus 373 a~~~~~DvviiDTAGRl~~~~~LM~EL~ki~rvi~k~~~~aP~e~lLVlDa~tGQna~~qak~F~e~~~ltGiIlTKlDG 452 (499)
T PRK10416 373 AKARNVDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQAKLFHEAVGLTGITLTKLDG 452 (499)
T ss_pred HHHCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCHHHHHHHHHHHHCCCCCEEEEECCCC
T ss_conf 99729998998577643260999999999999997237899974899977876778999999984427997599965677
Q ss_pred C
Q ss_conf 4
Q gi|254780809|r 332 Y 332 (440)
Q Consensus 332 ~ 332 (440)
.
T Consensus 453 t 453 (499)
T PRK10416 453 T 453 (499)
T ss_pred C
T ss_conf 8
No 367
>KOG0054 consensus
Probab=96.78 E-value=0.0044 Score=41.20 Aligned_cols=28 Identities=32% Similarity=0.555 Sum_probs=25.3
Q ss_pred HHHCCCEEEECCCCCCHHHHHHHHHCCH
Q ss_conf 3202302431146631888999985520
Q gi|254780809|r 216 IRNGYKIVILGHSNAGKSSLFNALAKKD 243 (440)
Q Consensus 216 l~~g~~v~i~G~pN~GKSSL~N~L~~~~ 243 (440)
++.|-.|+++|++-+|||||+.+++|+=
T Consensus 544 i~~G~lvaVvG~vGsGKSSLL~AiLGEm 571 (1381)
T KOG0054 544 IKKGQLVAVVGPVGSGKSSLLSAILGEM 571 (1381)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 6289889998999888899999996587
No 368
>COG5258 GTPBP1 GTPase [General function prediction only]
Probab=96.77 E-value=0.0005 Score=47.75 Aligned_cols=136 Identities=24% Similarity=0.253 Sum_probs=73.2
Q ss_pred HHHCCCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCCEEECCCCCC--C----CCEEEEEE--ECC---HHCCCCHHH
Q ss_conf 320230243114663188899998552000234546872110001245--6----83589995--081---000241035
Q gi|254780809|r 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLD--L----EGYLVKIS--DTA---GIRETDDIV 284 (440)
Q Consensus 216 l~~g~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTTRD~i~~~~~--i----~g~~~~l~--DTa---Gir~t~d~I 284 (440)
..+-+.|+.+|..|+|||||.-+|.--+ --|=-|-||-++..... . ..+.+.++ |-- +++++-|+-
T Consensus 114 ~~~hv~Vg~aGhVdhGKSTlvG~LvtG~---~DDG~G~tR~~ldv~kHEverGlsa~iS~~v~Gf~dgk~~rlknPld~a 190 (527)
T COG5258 114 APEHVLVGVAGHVDHGKSTLVGVLVTGR---LDDGDGATRSYLDVQKHEVERGLSADISLRVYGFDDGKVVRLKNPLDEA 190 (527)
T ss_pred CCCEEEEEEECCCCCCCCEEEEEEEECC---CCCCCCCHHHHHHHHHHHHHHCCCCCEEEEEEEECCCCEEEECCCCCHH
T ss_conf 9963899974244578635987898457---7788840211345416777616532226999972499267605852077
Q ss_pred HHHHHHHHHHHHHHHCCEEECCCCC-CHHH-----------------------------------HHHHCCCCCCCCCCC
Q ss_conf 6666788899850301102013589-8566-----------------------------------343128985322223
Q gi|254780809|r 285 EKEGIKRTFLEVENADLILLLKEIN-SKKE-----------------------------------ISFPKNIDFIFIGTK 328 (440)
Q Consensus 285 E~~GI~ra~~~i~~aDlil~v~D~~-~~~~-----------------------------------~~~~~~~~~i~V~NK 328 (440)
|+. ..++.||-++.++|.- ...| +...-..|+++|.+|
T Consensus 191 E~~------~vv~~aDklVsfVDtvGHEpwLrTtirGL~gqk~dYglLvVaAddG~~~~tkEHLgi~~a~~lPviVvvTK 264 (527)
T COG5258 191 EKA------AVVKRADKLVSFVDTVGHEPWLRTTIRGLLGQKVDYGLLVVAADDGVTKMTKEHLGIALAMELPVIVVVTK 264 (527)
T ss_pred HHH------HHHHHCCCEEEEEECCCCCHHHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHHHHHHHHHCCCEEEEEEE
T ss_conf 776------76652030899985378627899888887326666279999816773033067656564616977999995
Q ss_pred CCCCCCCCH----------------------------------------HHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 334465420----------------------------------------00001333323235899999999
Q gi|254780809|r 329 SDLYSTYTE----------------------------------------EYDHLISSFTGEGLEELINKIKS 360 (440)
Q Consensus 329 ~Dl~~~~~~----------------------------------------~~~~~ISaktg~Gi~~L~~~I~~ 360 (440)
+|+.+...- -+.+.+|+-||+|++-|.+.+..
T Consensus 265 ~D~~~ddr~~~v~~ei~~~Lk~v~Rip~~vk~~~d~v~aa~a~k~~~~vvPi~~tSsVTg~GldlL~e~f~~ 336 (527)
T COG5258 265 IDMVPDDRFQGVVEEISALLKRVGRIPLIVKDTDDVVLAAKAMKAGRGVVPIFYTSSVTGEGLDLLDEFFLL 336 (527)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHCCCCEEEEEEEECCCCCCHHHHHHHHHH
T ss_conf 256827889999999999999743465355055326776543323782577999822457538999999974
No 369
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=96.76 E-value=0.002 Score=43.50 Aligned_cols=132 Identities=20% Similarity=0.257 Sum_probs=72.4
Q ss_pred HHHHCCCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCCEEECCCCCCCCCEEEEEEECCHHCCCCHHHHHHHHHHHHH
Q ss_conf 43202302431146631888999985520002345468721100012456835899950810002410356666788899
Q gi|254780809|r 215 IIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFL 294 (440)
Q Consensus 215 ~l~~g~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTTRD~i~~~~~i~g~~~~l~DTaGir~t~d~IE~~GI~ra~~ 294 (440)
.+..|=+|+|+|+..+|||||++.|+|-.. + -++.+.++|.++.=+|..-+|..-.-
T Consensus 487 ~i~~Ge~vaIvG~sGsGKSTL~kll~Gl~~----p--------~~G~i~idg~~~~~~~~~~~r~~i~~----------- 543 (694)
T TIGR03375 487 TIRPGEKVAIIGRIGSGKSTLLKLLLGLYQ----P--------TEGSVLLDGVDIRQIDPADLRRNIGY----------- 543 (694)
T ss_pred EECCCCEEEEEECCCCCHHHHHHHHCCCCC----C--------CCCEEEECCEECCCCCHHHHHHHCEE-----------
T ss_conf 887997899980589878899998556758----9--------98879989854254999999730213-----------
Q ss_pred HHHHHCCEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEE
Q ss_conf 85030110201358985663431289853222233344654200000133332323589999999996322035886320
Q gi|254780809|r 295 EVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374 (440)
Q Consensus 295 ~i~~aDlil~v~D~~~~~~~~~~~~~~~i~V~NK~Dl~~~~~~~~~~~ISaktg~Gi~~L~~~I~~~l~~~~~~~~~~i~ 374 (440)
+.+ |. .+++.+=.+.+..- .+... ..-..-|....|+.+.++.+-.-+.....+....+.
T Consensus 544 -v~Q-~~--~lf~gTi~eNi~~~---------------~~~~~-~~~i~~a~~~a~l~~~I~~lp~g~~t~i~e~G~~LS 603 (694)
T TIGR03375 544 -VPQ-DP--RLFYGTLRDNIALG---------------APYAD-DEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLS 603 (694)
T ss_pred -ECC-CC--CCCCCCHHHHHHCC---------------CCCCC-HHHHHHHHHHHCCHHHHHHCCCCCCCEECCCCCCCC
T ss_conf -576-77--11074699998416---------------99999-999999999819799997185667877468999468
Q ss_pred HHHHHHHHHHHHHHH
Q ss_conf 148999999999999
Q gi|254780809|r 375 SHKRHLYHLSQTVRY 389 (440)
Q Consensus 375 ~~~Rq~~~L~~a~~~ 389 (440)
.-+||+-+|.+|+..
T Consensus 604 gGqrQri~lARAl~~ 618 (694)
T TIGR03375 604 GGQRQAVALARALLR 618 (694)
T ss_pred HHHHHHHHHHHHHHC
T ss_conf 999999999999957
No 370
>pfam00493 MCM MCM2/3/5 family.
Probab=96.76 E-value=0.036 Score=34.83 Aligned_cols=63 Identities=27% Similarity=0.342 Sum_probs=40.6
Q ss_pred HHHHHHHHCCCEEEECCCCCCHHHHHHHHHCC-HHCCCCCCCCC---------CEEECCCCCCCCCEEEEEEE
Q ss_conf 34554320230243114663188899998552-00023454687---------21100012456835899950
Q gi|254780809|r 211 KLGEIIRNGYKIVILGHSNAGKSSLFNALAKK-DVAIVTDIPGT---------TRDVLTIDLDLEGYLVKISD 273 (440)
Q Consensus 211 ~~~~~l~~g~~v~i~G~pN~GKSSL~N~L~~~-~~aIVs~~~GT---------TRD~i~~~~~i~g~~~~l~D 273 (440)
+.+..+|..+.|.|+|-|.+|||.|+.+...- .|++-++-.|+ +||.......+.+-.+.+.|
T Consensus 49 ~~~~~~Rg~ihiLLvGdPG~gKSqlLk~~~~~~pr~~~tsg~~ss~~GLTa~~~~d~~~~~~~leaGalvlAd 121 (327)
T pfam00493 49 PDGTRLRGDINVLLVGDPGTAKSQLLKYVAKLAPRAVYTSGKGSSAAGLTAAVVRDPDTGEWTLEAGALVLAD 121 (327)
T ss_pred CCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHCCCCEEECCCCCCCCCCEEEEEEECCCCCEEEECCCEEECC
T ss_conf 8886203651189846998156099999998688708831776656776158998068883698368477558
No 371
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=96.70 E-value=0.0049 Score=40.85 Aligned_cols=112 Identities=27% Similarity=0.345 Sum_probs=60.2
Q ss_pred CEEEECCCCCCHHHHHHHHHCC------HHCCCC-C--CCCC--------------------CEEECCC------CCCCC
Q ss_conf 0243114663188899998552------000234-5--4687--------------------2110001------24568
Q gi|254780809|r 221 KIVILGHSNAGKSSLFNALAKK------DVAIVT-D--IPGT--------------------TRDVLTI------DLDLE 265 (440)
Q Consensus 221 ~v~i~G~pN~GKSSL~N~L~~~------~~aIVs-~--~~GT--------------------TRD~i~~------~~~i~ 265 (440)
-|+++|||-|||+|-+-.|..+ +.++|| | .+|- -.|..+. .-..+
T Consensus 2 Vi~lvGptGvGKTTTiaKLA~~~~~~~~kV~lit~Dt~R~gA~eQL~~~a~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADTYRPAAIEQLRVLGEQVGVPVFEEGEGKDPVSIAKRAIEHAREE 81 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHC
T ss_conf 99998999998899999999999976992899974887577999999999974985992277558799999999998756
Q ss_pred CEEEEEEECCHHCCCC-HHHHHHHHHHHHHHHHHHCCEEECCCCCCHHHH-H----HHCCCCC-CCCCCCCCCCCCC
Q ss_conf 3589995081000241-035666678889985030110201358985663-4----3128985-3222233344654
Q gi|254780809|r 266 GYLVKISDTAGIRETD-DIVEKEGIKRTFLEVENADLILLLKEINSKKEI-S----FPKNIDF-IFIGTKSDLYSTY 335 (440)
Q Consensus 266 g~~~~l~DTaGir~t~-d~IE~~GI~ra~~~i~~aDlil~v~D~~~~~~~-~----~~~~~~~-i~V~NK~Dl~~~~ 335 (440)
++.+.|+||||-...+ +.++++ +.+......+.+++|.|+....+. . +.+..++ =++++|.|-....
T Consensus 82 ~~D~IlIDTaGr~~~d~~~~~el---~~l~~~~~p~~~~LVl~a~~~~~~~~~~~~f~~~~~~~~~I~TKlDet~~~ 155 (173)
T cd03115 82 NFDVVIVDTAGRLQIDENLMEEL---KKIKRVVKPDEVLLVVDAMTGQDAVNQAKAFNEALGITGVILTKLDGDARG 155 (173)
T ss_pred CCCEEEEECCCCCCCCHHHHHHH---HHHHHHHCCCCCEEECCCCCHHHHHHHHHHHHHCCCCCEEEEEEECCCCCC
T ss_conf 89989997888787999999999---999864489721574246550658999999874279978999714389975
No 372
>PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional
Probab=96.68 E-value=0.00075 Score=46.51 Aligned_cols=53 Identities=23% Similarity=0.289 Sum_probs=42.6
Q ss_pred HHHCCCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCCEEECCCCCCCCCEEEEEEECCHHCCC
Q ss_conf 32023024311466318889999855200023454687211000124568358999508100024
Q gi|254780809|r 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 (440)
Q Consensus 216 l~~g~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTTRD~i~~~~~i~g~~~~l~DTaGir~t 280 (440)
+..|=+|+|+|++-+|||||+|.|++-.. +-++.+.++|.++.-+|..-+|+.
T Consensus 346 i~~Ge~vaiVG~SGsGKSTL~~LL~r~y~------------p~~G~I~idG~di~~~~~~~lR~~ 398 (547)
T PRK10522 346 IKRGELLFLIGGNGSGKSTLAMLLTGLYQ------------PQSGEILLDGKPVTAEQPEDYRKL 398 (547)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHHCCCC------------CCCCEEEECCEECCCCCHHHHHHH
T ss_conf 85998899989999977999999828966------------999869899999996899999854
No 373
>pfam00448 SRP54 SRP54-type protein, GTPase domain. This family includes relatives of the G-domain of the SRP54 family of proteins.
Probab=96.64 E-value=0.0038 Score=41.65 Aligned_cols=112 Identities=26% Similarity=0.335 Sum_probs=59.1
Q ss_pred CEEEECCCCCCHHHHHHHHHC------CHHCCCC-------------------CCCC----CCEEECC---CCC---CCC
Q ss_conf 024311466318889999855------2000234-------------------5468----7211000---124---568
Q gi|254780809|r 221 KIVILGHSNAGKSSLFNALAK------KDVAIVT-------------------DIPG----TTRDVLT---IDL---DLE 265 (440)
Q Consensus 221 ~v~i~G~pN~GKSSL~N~L~~------~~~aIVs-------------------~~~G----TTRD~i~---~~~---~i~ 265 (440)
-|+++||+-|||+|-+=+|.. .+.+++| ++|- +..|..+ ..+ ...
T Consensus 3 vi~lvGptGvGKTTTiaKLAa~~~~~~~~V~lit~Dt~R~gA~eQL~~ya~~l~v~~~~~~~~~d~~~~~~~~l~~~~~~ 82 (196)
T pfam00448 3 VILLVGLQGSGKTTTIAKLAAYLKKQGKKVLLVAADTFRAAAIEQLKQLAERLGVPVFGSGTGSDPAAVAFDAVEKAKAE 82 (196)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHC
T ss_conf 99998999998899999999999977992899975877688999999999863981781487778789999999998846
Q ss_pred CEEEEEEECCHHCCC-CHHHHHHHHHHHHHHHHHHCCEEECCCCCCHHH-H----HHHCCC-CCCCCCCCCCCCCCC
Q ss_conf 358999508100024-103566667888998503011020135898566-3----431289-853222233344654
Q gi|254780809|r 266 GYLVKISDTAGIRET-DDIVEKEGIKRTFLEVENADLILLLKEINSKKE-I----SFPKNI-DFIFIGTKSDLYSTY 335 (440)
Q Consensus 266 g~~~~l~DTaGir~t-~d~IE~~GI~ra~~~i~~aDlil~v~D~~~~~~-~----~~~~~~-~~i~V~NK~Dl~~~~ 335 (440)
+..+.|+||||.... .+.++.+ +. +......+-+++|++++.... . .+.+.. ..=++++|.|-....
T Consensus 83 ~~D~IlIDTaGr~~~d~~~~~el--~~-~~~~~~~~~~~LVl~a~~~~~~~~~~~~f~~~~~~~~~I~TKlDet~~~ 156 (196)
T pfam00448 83 NYDVVLVDTAGRLQNDKNLMDEL--KK-IKRVIAPDEVLLVLDATTGQNALNQAKAFNEAVGITGVILTKLDGDAKG 156 (196)
T ss_pred CCCEEEEECCCCCCCCHHHHHHH--HH-HHHHCCCCCEEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEEECCCCCC
T ss_conf 89999998999874767789999--99-9852287302899856778213789998760047762688840578875
No 374
>KOG0393 consensus
Probab=96.63 E-value=0.0005 Score=47.76 Aligned_cols=106 Identities=25% Similarity=0.363 Sum_probs=66.1
Q ss_pred CCCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCCEEECCCCCCCC-CEE--EEEEECCHHCCCCHHHHHHHHHHHHHH
Q ss_conf 23024311466318889999855200023454687211000124568-358--999508100024103566667888998
Q gi|254780809|r 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLE-GYL--VKISDTAGIRETDDIVEKEGIKRTFLE 295 (440)
Q Consensus 219 g~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTTRD~i~~~~~i~-g~~--~~l~DTaGir~t~d~IE~~GI~ra~~~ 295 (440)
.++++++|-..+||++|+...... +-=.++-=|--|--...+.++ |.+ ..|.||||--+- |.+. -+ .
T Consensus 4 ~~K~VvVGDga~GKT~ll~~~t~~--~fp~~yvPTVFdnys~~v~V~dg~~v~L~LwDTAGqedY-DrlR------pl-s 73 (198)
T KOG0393 4 RIKCVVVGDGAVGKTCLLISYTTN--AFPEEYVPTVFDNYSANVTVDDGKPVELGLWDTAGQEDY-DRLR------PL-S 73 (198)
T ss_pred EEEEEEECCCCCCCEEEEEEECCC--CCCCCCCCEEECCCEEEEEECCCCEEEEEEEECCCCCCC-CCCC------CC-C
T ss_conf 369999898876745889884357--686654563875623899964897899863314797301-1336------36-7
Q ss_pred HHHHCCEEECCCCCCHHHHHH------------HCCCCCCCCCCCCCCCCC
Q ss_conf 503011020135898566343------------128985322223334465
Q gi|254780809|r 296 VENADLILLLKEINSKKEISF------------PKNIDFIFIGTKSDLYST 334 (440)
Q Consensus 296 i~~aDlil~v~D~~~~~~~~~------------~~~~~~i~V~NK~Dl~~~ 334 (440)
-.++|++|.++...++..... ..+.|+++|.+|.||...
T Consensus 74 Y~~tdvfl~cfsv~~p~S~~nv~~kW~pEi~~~cp~vpiiLVGtk~DLr~d 124 (198)
T KOG0393 74 YPQTDVFLLCFSVVSPESFENVKSKWIPEIKHHCPNVPIILVGTKADLRDD 124 (198)
T ss_pred CCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCEEEEEEHHHHHHC
T ss_conf 788888999987698266888775106889963899988998212776538
No 375
>COG5192 BMS1 GTP-binding protein required for 40S ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=96.63 E-value=0.0065 Score=40.01 Aligned_cols=17 Identities=24% Similarity=0.130 Sum_probs=10.5
Q ss_pred CEEEECCCCCCCCEEEE
Q ss_conf 29898468867616999
Q gi|254780809|r 7 TIFAVSTGALPSAISII 23 (440)
Q Consensus 7 TI~A~aTp~g~~aiavi 23 (440)
-|+|+.-|||.|---.|
T Consensus 70 fIvavvGPpGtGKsTLi 86 (1077)
T COG5192 70 FIVAVVGPPGTGKSTLI 86 (1077)
T ss_pred EEEEEECCCCCCHHHHH
T ss_conf 58996369988746899
No 376
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.62 E-value=0.011 Score=38.54 Aligned_cols=75 Identities=25% Similarity=0.429 Sum_probs=46.0
Q ss_pred HCCCEEEECCCCCCHHHHHHHHHCC--------HHCCCCC-C--CCCCEEECCCCCCCCCEEEEEEECCHHCCCCHHHHH
Q ss_conf 0230243114663188899998552--------0002345-4--687211000124568358999508100024103566
Q gi|254780809|r 218 NGYKIVILGHSNAGKSSLFNALAKK--------DVAIVTD-I--PGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEK 286 (440)
Q Consensus 218 ~g~~v~i~G~pN~GKSSL~N~L~~~--------~~aIVs~-~--~GTTRD~i~~~~~i~g~~~~l~DTaGir~t~d~IE~ 286 (440)
.+-.|+++|||-|||+|.+=.|..+ +++++|- . -| -.+-+..+-.+-|+|+..++++.=
T Consensus 193 ~~~vi~lvGPTGVGKTTTiAKLAa~~~l~~~~~~V~lIT~DtyRig-A~eQLk~ya~il~vp~~vv~~~~~--------- 262 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGKKKVALITTDTYRIG-AVEQLKTYAKILGVPVKVARDPKE--------- 262 (282)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEECCCCHH-HHHHHHHHHHHHCCEEEEECCHHH---------
T ss_conf 6727999778887578899999999999738996799980777678-999999999995974899399999---------
Q ss_pred HHHHHHHHHHHHHCCEEE
Q ss_conf 667888998503011020
Q gi|254780809|r 287 EGIKRTFLEVENADLILL 304 (440)
Q Consensus 287 ~GI~ra~~~i~~aDlil~ 304 (440)
..+++....+.|+||.
T Consensus 263 --l~~~l~~~~~~d~IlI 278 (282)
T TIGR03499 263 --LAKALERLRDKDLILI 278 (282)
T ss_pred --HHHHHHHCCCCCEEEE
T ss_conf --9999986579899998
No 377
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.59 E-value=0.0093 Score=38.90 Aligned_cols=116 Identities=22% Similarity=0.231 Sum_probs=62.7
Q ss_pred HHHCCCEEEECCCCCCHHHHHHHHHC------CHHCCCCC----------------------CCCCCEEEC----CCCCC
Q ss_conf 32023024311466318889999855------20002345----------------------468721100----01245
Q gi|254780809|r 216 IRNGYKIVILGHSNAGKSSLFNALAK------KDVAIVTD----------------------IPGTTRDVL----TIDLD 263 (440)
Q Consensus 216 l~~g~~v~i~G~pN~GKSSL~N~L~~------~~~aIVs~----------------------~~GTTRD~i----~~~~~ 263 (440)
+.+|--|+++|+.-|||.|-+-.|.. ++.++|+- +.++...-+ ...-.
T Consensus 203 l~~g~VIaLVGvnGvGKTTTiAKLA~~l~~~gkkV~LVAaDTFRaAAiEQLk~~g~rlgVpV~~~~dpa~l~~av~~~a~ 282 (407)
T PRK12726 203 LSNHRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYMTY 282 (407)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHHCCEEEEECCHHHHHHHHHHHHH
T ss_conf 03690899989998978999999999999779917999706677889999999999979649981888999999999986
Q ss_pred CCCEEEEEEECCHHCC-CCHHHHHHHHHHHHHHHHHHCCEEECCCCCCHH-H----HHHHCCCCC-CCCCCCCCCCCC
Q ss_conf 6835899950810002-410356666788899850301102013589856-6----343128985-322223334465
Q gi|254780809|r 264 LEGYLVKISDTAGIRE-TDDIVEKEGIKRTFLEVENADLILLLKEINSKK-E----ISFPKNIDF-IFIGTKSDLYST 334 (440)
Q Consensus 264 i~g~~~~l~DTaGir~-t~d~IE~~GI~ra~~~i~~aDlil~v~D~~~~~-~----~~~~~~~~~-i~V~NK~Dl~~~ 334 (440)
.+++.+.|+||||-.. ..+.++.+ +.+...-.-+..+++.|+.... . .......++ =+|++|.|-..+
T Consensus 283 ~~~~DvVIIDTAGRl~~d~~Lm~EL---~ki~~vi~P~~~lLV~dag~~~~~v~qa~~~~~~v~ItGiILTKLDgtAK 357 (407)
T PRK12726 283 VNCVDHILIDTVGRNYLAEESVSEI---SAYTDVVHPDLTCFTFSSGMKSADVMTILPKLAEIPIDGFIITKMDETTR 357 (407)
T ss_pred CCCCCEEEEECCCCCCCCHHHHHHH---HHHHHCCCCCEEEEEECCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCCC
T ss_conf 2899989996999881349999999---99873328966999936756699999999870479998799970147898
No 378
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=96.59 E-value=0.0031 Score=42.23 Aligned_cols=131 Identities=21% Similarity=0.301 Sum_probs=66.9
Q ss_pred HHHCCCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCCEEECCCCCCCCCEEEEEEECCHHCCCCHHHHHHHHHHHHHH
Q ss_conf 32023024311466318889999855200023454687211000124568358999508100024103566667888998
Q gi|254780809|r 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295 (440)
Q Consensus 216 l~~g~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTTRD~i~~~~~i~g~~~~l~DTaGir~t~d~IE~~GI~ra~~~ 295 (440)
+..|-.|+|+|+.-+|||||++.|+|-.. +. ++.+.++|.++.=+|..-+|..-. .
T Consensus 27 i~~G~~v~ivG~sGsGKSTLl~ll~gl~~----p~--------~G~I~i~g~~~~~~~~~~~r~~i~------------~ 82 (220)
T cd03245 27 IRAGEKVAIIGRVGSGKSTLLKLLAGLYK----PT--------SGSVLLDGTDIRQLDPADLRRNIG------------Y 82 (220)
T ss_pred ECCCCEEEEECCCCCHHHHHHHHHHCCCC----CC--------CCEEEECCEEHHHHCHHHHHHCEE------------E
T ss_conf 87999999999999859999999967254----78--------658999999957725999973269------------9
Q ss_pred HHHHCCEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEH
Q ss_conf 50301102013589856634312898532222333446542000001333323235899999999963220358863201
Q gi|254780809|r 296 VENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIPS 375 (440)
Q Consensus 296 i~~aDlil~v~D~~~~~~~~~~~~~~~i~V~NK~Dl~~~~~~~~~~~ISaktg~Gi~~L~~~I~~~l~~~~~~~~~~i~~ 375 (440)
+.+ +- ++++.+=.+.+.+ .++ .... .-...+..-.|+.++.+.+.+-+..........+.-
T Consensus 83 v~Q-~~--~lf~~Ti~eNi~~---------~~~------~~~~-~~i~~~~~~~~l~~~i~~~~~g~~t~i~~~g~~LSg 143 (220)
T cd03245 83 VPQ-DV--TLFYGTLRDNITL---------GAP------LADD-ERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSG 143 (220)
T ss_pred ECC-CC--EEECCCHHHHHHC---------CCC------CCCH-HHHHHHHHHHCCHHHHHHCCCCCCCCCCCCCCEECH
T ss_conf 916-89--6766759998535---------797------7897-999999999597899973755434535899972189
Q ss_pred HHHHHHHHHHHHHH
Q ss_conf 48999999999999
Q gi|254780809|r 376 HKRHLYHLSQTVRY 389 (440)
Q Consensus 376 ~~Rq~~~L~~a~~~ 389 (440)
-+||+-++.+++..
T Consensus 144 GqkQri~lARal~~ 157 (220)
T cd03245 144 GQRQAVALARALLN 157 (220)
T ss_pred HHHHHHHHHHHHHC
T ss_conf 99999999999955
No 379
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=96.57 E-value=0.0025 Score=42.83 Aligned_cols=54 Identities=24% Similarity=0.270 Sum_probs=42.8
Q ss_pred EEEECCCCCCHHHHHHHHHCCH-HCCCCCCCCCCEEECCCCCCCCCEEEEEEECCHH
Q ss_conf 2431146631888999985520-0023454687211000124568358999508100
Q gi|254780809|r 222 IVILGHSNAGKSSLFNALAKKD-VAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277 (440)
Q Consensus 222 v~i~G~pN~GKSSL~N~L~~~~-~aIVs~~~GTTRD~i~~~~~i~g~~~~l~DTaGi 277 (440)
++|+||+.+||+||++.|+.+. ..+...++-|||-.-.. +.+|..+.+++..-+
T Consensus 2 ivi~GPSG~GK~tl~~~L~~~~~~~~~~~vs~TTR~~r~~--E~~G~dY~Fvs~~~F 56 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEEFDPNFGFSVSHTTRKPRPG--EVDGVDYHFVSKEEF 56 (137)
T ss_pred EEEECCCCCCHHHHHHHHHHCCCCCEEEEEEEECCCCCCC--CCCCCEEEEECHHHH
T ss_conf 9999999889999999998519877687566037899888--778967898679999
No 380
>COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=96.57 E-value=0.0039 Score=41.55 Aligned_cols=30 Identities=37% Similarity=0.457 Sum_probs=25.6
Q ss_pred HHHCCCEEEECCCCCCHHHHHHHHHCCHHC
Q ss_conf 320230243114663188899998552000
Q gi|254780809|r 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVA 245 (440)
Q Consensus 216 l~~g~~v~i~G~pN~GKSSL~N~L~~~~~a 245 (440)
+..|-+++|+|+.-+|||||+|.|+|.-.+
T Consensus 344 ~~~g~~talvG~SGaGKSTLl~lL~G~~~~ 373 (559)
T COG4988 344 IKAGQLTALVGASGAGKSTLLNLLLGFLAP 373 (559)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHHCCCCC
T ss_conf 548967999889999789999998475777
No 381
>PRK00389 gcvT glycine cleavage system aminomethyltransferase T; Reviewed
Probab=96.54 E-value=0.022 Score=36.32 Aligned_cols=74 Identities=19% Similarity=0.258 Sum_probs=51.3
Q ss_pred CCCEEEEECCCHHHHHHHHHHHCCCC--CCCCEEEEEEEECCCCCEEEEEEEEEECCCCCCCCCCEEEEEECCCHHHHHH
Q ss_conf 76169997273889999998716688--8875389988754898672069999956779988775399980898788999
Q gi|254780809|r 17 PSAISIIRLSGPSCFQVCEFICKKKK--PFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNG 94 (440)
Q Consensus 17 ~~aiaviRiSG~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~iD~~l~~~f~~P~SyTGEDvvEi~~HG~~~i~~~ 94 (440)
.|..+.|+|+||++.+.++.++.... .++.+..|..+.+.+|.++|++++..+ |||-.=+-+ +.....+
T Consensus 49 ~S~~~ki~I~G~Da~~~L~~l~t~di~~l~~G~~~yt~~ln~~G~i~~D~~v~rl-------~e~~~~lv~--~a~~~~~ 119 (362)
T PRK00389 49 VSHMGEVDVTGPDALAFLQYLLANDVAKLKPGKALYTAMLNEDGGVIDDLIVYKL-------SEDEYLLVV--NAANREK 119 (362)
T ss_pred CCCCEEEEEECCCHHHHHHHHHCCCCCCCCCCCEEEEEEECCCCCEEEEEEEEEE-------CCCCEEEEC--CCCHHHH
T ss_conf 8874899998889999998861135344799869999878799878876778886-------376047623--7204889
Q ss_pred HHHHH
Q ss_conf 99987
Q gi|254780809|r 95 ILEEL 99 (440)
Q Consensus 95 il~~l 99 (440)
.++.|
T Consensus 120 ~~~wl 124 (362)
T PRK00389 120 DLAWI 124 (362)
T ss_pred HHHHH
T ss_conf 99999
No 382
>KOG3859 consensus
Probab=96.53 E-value=0.0089 Score=39.06 Aligned_cols=118 Identities=19% Similarity=0.371 Sum_probs=69.9
Q ss_pred HHHHHHCC--CEEEECCCCCCHHHHHHHHHCCHHCC---CCCCCC-----CCEEECCCCCCCCCEEEEEEECCHHCCCCH
Q ss_conf 55432023--02431146631888999985520002---345468-----721100012456835899950810002410
Q gi|254780809|r 213 GEIIRNGY--KIVILGHSNAGKSSLFNALAKKDVAI---VTDIPG-----TTRDVLTIDLDLEGYLVKISDTAGIRETDD 282 (440)
Q Consensus 213 ~~~l~~g~--~v~i~G~pN~GKSSL~N~L~~~~~aI---Vs~~~G-----TTRD~i~~~~~i~g~~~~l~DTaGir~t~d 282 (440)
.+.+..|+ .|.-+|.+..||||||+.|.+.+--- ....|+ .|-|.-|.++. .+.+++||+|+.+.-|
T Consensus 34 ~ksv~~GF~FNilCvGETg~GKsTLmdtLFNt~f~~~p~~H~~~~V~L~~~TyelqEsnvr---lKLtiv~tvGfGDQin 110 (406)
T KOG3859 34 NKSVSQGFCFNILCVGETGLGKSTLMDTLFNTKFESEPSTHTLPNVKLQANTYELQESNVR---LKLTIVDTVGFGDQIN 110 (406)
T ss_pred HHHHHCCCEEEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCEEECCHHHHHHCCEE---EEEEEEEECCCCCCCC
T ss_conf 8998627437788842677547789999863666788786678873210021434425716---8999984034432137
Q ss_pred H-------------------HHHHHHHHHHHHHHHHC--CEEECCCCCC--HH--HH----HHHCCCCCCCCCCCCCCCC
Q ss_conf 3-------------------56666788899850301--1020135898--56--63----4312898532222333446
Q gi|254780809|r 283 I-------------------VEKEGIKRTFLEVENAD--LILLLKEINS--KK--EI----SFPKNIDFIFIGTKSDLYS 333 (440)
Q Consensus 283 ~-------------------IE~~GI~ra~~~i~~aD--lil~v~D~~~--~~--~~----~~~~~~~~i~V~NK~Dl~~ 333 (440)
+ -|..-|+|++....++- +.||.+-++. -. ++ ......++|.|+.|+|-.+
T Consensus 111 K~~Syk~iVdyidaQFEaYLQEELKi~Rsl~~~hDsRiH~CLYFI~PTGH~LKslDLvtmk~LdskVNIIPvIAKaDtis 190 (406)
T KOG3859 111 KEDSYKPIVDYIDAQFEAYLQEELKIRRSLFTYHDSRIHVCLYFISPTGHSLKSLDLVTMKKLDSKVNIIPVIAKADTIS 190 (406)
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 10010269999999999999998778888887526725899999568874145779999998753401578888764430
No 383
>cd01857 HSR1_MMR1 HSR1/MMR1. Human HSR1, is localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has only eukaryote members. This subfamily shows a circular permutation of the GTPase signature motifs so that the C-terminal strands 5, 6, and 7 (strand 6 contains the G4 box with sequence NKXD) are relocated to the N terminus.
Probab=96.51 E-value=0.0013 Score=44.89 Aligned_cols=45 Identities=16% Similarity=0.276 Sum_probs=33.7
Q ss_pred HHHHHHHHHCCEEECCCCCCHH-----HHH-----HHCCCCCCCCCCCCCCCCCC
Q ss_conf 8899850301102013589856-----634-----31289853222233344654
Q gi|254780809|r 291 RTFLEVENADLILLLKEINSKK-----EIS-----FPKNIDFIFIGTKSDLYSTY 335 (440)
Q Consensus 291 ra~~~i~~aDlil~v~D~~~~~-----~~~-----~~~~~~~i~V~NK~Dl~~~~ 335 (440)
...+.+++||+||+|.|+..+. ++. ...++|.++|+||+||.+..
T Consensus 4 q~~~~ie~aDvVleV~DaR~p~~s~~~~l~~~l~~~~~~Kp~ilVlNK~DL~~~~ 58 (141)
T cd01857 4 QLWRVVERSDIVVQIVDARNPLLFRPPDLERYVKEVDPRKKNILLLNKADLLTEE 58 (141)
T ss_pred HHHHHHHHCCEEEEEEECCCCCCCCCHHHHHHHHHHCCCCCEEEEEECCCCCCHH
T ss_conf 9999997699999999898888768999999999843899579998650049999
No 384
>cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes.
Probab=96.50 E-value=0.0044 Score=41.18 Aligned_cols=125 Identities=10% Similarity=0.120 Sum_probs=67.7
Q ss_pred HHHCCCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCCEEECCCCCCCCCEEEEEEECCHHCCCCHHHHHHHHHHHHHH
Q ss_conf 32023024311466318889999855200023454687211000124568358999508100024103566667888998
Q gi|254780809|r 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLE 295 (440)
Q Consensus 216 l~~g~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTTRD~i~~~~~i~g~~~~l~DTaGir~t~d~IE~~GI~ra~~~ 295 (440)
++.|=+|+|+|+.-+|||||++.|+|-.. + -++.+.++|.++.=+|.--+|.
T Consensus 37 i~~Ge~vaIvG~sGsGKSTL~~ll~gl~~----p--------~~G~I~idg~~i~~~~~~~lr~---------------- 88 (226)
T cd03248 37 LHPGEVTALVGPSGSGKSTVVALLENFYQ----P--------QGGQVLLDGKPISQYEHKYLHS---------------- 88 (226)
T ss_pred ECCCCEEEEECCCCCHHHHHHHHHHCCCC----C--------CCCEEEECCEEHHHCCHHHHHH----------------
T ss_conf 82999999999999849999999964546----7--------8878999999934489999973----------------
Q ss_pred HHHHCCEEEC------CCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCC
Q ss_conf 5030110201------3589856634312898532222333446542000001333323235899999999963220358
Q gi|254780809|r 296 VENADLILLL------KEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKL 369 (440)
Q Consensus 296 i~~aDlil~v------~D~~~~~~~~~~~~~~~i~V~NK~Dl~~~~~~~~~~~ISaktg~Gi~~L~~~I~~~l~~~~~~~ 369 (440)
-+-+| ++.+-...+.+ .. +. .......-+....+++.++..+..-+.......
T Consensus 89 -----~i~~v~Q~~~lf~~ti~eNi~~--------g~------~~--~~~~~i~~~~~~~~~~~~i~~l~~gl~t~i~~~ 147 (226)
T cd03248 89 -----KVSLVGQEPVLFARSLQDNIAY--------GL------QS--CSFECVKEAAQKAHAHSFISELASGYDTEVGEK 147 (226)
T ss_pred -----CEEEEECCCEECCCCHHHHHHC--------CC------CC--CCHHHHHHHHHHHCHHHHHHHCCCCCCCEECCC
T ss_conf -----2699924795767735666632--------78------99--999999999999661467762636664061684
Q ss_pred CCCEEHHHHHHHHHHHHHHH
Q ss_conf 86320148999999999999
Q gi|254780809|r 370 PFSIPSHKRHLYHLSQTVRY 389 (440)
Q Consensus 370 ~~~i~~~~Rq~~~L~~a~~~ 389 (440)
...+.--+||+-++.+|+..
T Consensus 148 g~~LSgGqkQRialARal~~ 167 (226)
T cd03248 148 GSQLSGGQKQRVAIARALIR 167 (226)
T ss_pred CCCCCHHHHHHHHHHHHHHC
T ss_conf 88769999999999999975
No 385
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=96.50 E-value=0.0016 Score=44.20 Aligned_cols=52 Identities=25% Similarity=0.358 Sum_probs=38.0
Q ss_pred HHHCCCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCCEEECCCCCCCCCEEEEEEECCHHCC
Q ss_conf 3202302431146631888999985520002345468721100012456835899950810002
Q gi|254780809|r 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRE 279 (440)
Q Consensus 216 l~~g~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTTRD~i~~~~~i~g~~~~l~DTaGir~ 279 (440)
+..|-+|+|+|++-+|||||+|.|.+... +-++.+.++|.++.-++...+|.
T Consensus 352 i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~------------~~~G~I~idg~dI~~i~~~~lr~ 403 (567)
T COG1132 352 IEPGEKVAIVGPSGSGKSTLIKLLLRLYD------------PTSGEILIDGIDIRDISLDSLRK 403 (567)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHHHHCC------------CCCCEEEECCEEHHHCCHHHHHH
T ss_conf 54898788855888857899999986158------------88836989999777538567887
No 386
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.48 E-value=0.0038 Score=41.64 Aligned_cols=50 Identities=24% Similarity=0.288 Sum_probs=36.0
Q ss_pred HHHCCCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCCEEECCCCCCCCCEEEEEEECCHH
Q ss_conf 32023024311466318889999855200023454687211000124568358999508100
Q gi|254780809|r 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277 (440)
Q Consensus 216 l~~g~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTTRD~i~~~~~i~g~~~~l~DTaGi 277 (440)
+..|-+++|+|+..+|||||++.|+|--.. -++.+.++|.++.-+|-.-+
T Consensus 25 i~~Ge~i~IvG~sGsGKSTLl~ll~gl~~p------------~~G~I~i~g~~i~~~~~~~~ 74 (234)
T cd03251 25 IPAGETVALVGPSGSGKSTLVNLIPRFYDV------------DSGRILIDGHDVRDYTLASL 74 (234)
T ss_pred ECCCCEEEEECCCCCHHHHHHHHHHCCCCC------------CCCEEEECCEECCCCCHHHH
T ss_conf 879999999989998299999999667667------------88689999999660899999
No 387
>TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein; InterPro: IPR005968 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). Thiamine pyrophosphate (TPP) is a required cofactor synthesized de novo in Salmonella typhimurium. The primary role for TPP is in central metabolism as an electron carrier and nucleophile for such enzymes as pyruvate dehydrogenase (1.2.4.1 from EC), acetolactate synthase (4.1.3.18 from EC), and alpha-ketoglutarate dehydrogenase (1.2.4.2 from EC). Despite its importance in cellular physiology, neither the de novo biosynthetic pathway nor the salvage systems for thiamine are fully understood in any organism. The model describes thiamine ABC transporter, ATP-binding protein, believed to be involved in the specific translocation of thiamine and its phosphoesters across the inner membrane The protein belongs to the larger ABC transport system which consists of at least three components: the inner membrane permease; thiamine binding protein and an ATP-binding subunit. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. It has been experimentally demonstrated that mutants in the various steps in the de novo synthesis of thiamine and its biologically active form, namely thiamine pyrophosphate can be exogenously supplemented with thiamine, thiamine monophosphate or thiamine pyrophosphate. ; GO: 0005524 ATP binding, 0042626 ATPase activity coupled to transmembrane movement of substances, 0006810 transport, 0009276 1-2nm peptidoglycan-based cell wall.
Probab=96.41 E-value=0.0019 Score=43.70 Aligned_cols=150 Identities=19% Similarity=0.243 Sum_probs=77.5
Q ss_pred HHHHHCCCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCCEEECCCCCCCCCEEEEEEECCHHCCCCHHHHHHHHHHHH
Q ss_conf 54320230243114663188899998552000234546872110001245683589995081000241035666678889
Q gi|254780809|r 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTF 293 (440)
Q Consensus 214 ~~l~~g~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTTRD~i~~~~~i~g~~~~l~DTaGir~t~d~IE~~GI~ra~ 293 (440)
-.+..|=+|||+|+.-||||||+|-+.|-.. + +++.+.++|..+ .-||=++..-.=
T Consensus 19 L~V~~Ge~VAi~GpSGAGKSTLLnLiAGF~~----P--------asG~i~~nd~~~--t~~aPy~RPvSM---------- 74 (213)
T TIGR01277 19 LSVEDGERVAILGPSGAGKSTLLNLIAGFLE----P--------ASGEIKVNDKDH--TRLAPYRRPVSM---------- 74 (213)
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHHCC----C--------CCEEEEECCCCC--CCCCCCCCCCCH----------
T ss_conf 4130177688875898627889877864047----7--------640588778012--268887777503----------
Q ss_pred HHHHHHCCEEECCCCCCHHHHHHHCCCCCCCCCCCCCC-------CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 98503011020135898566343128985322223334-------46542000001333323235899999999963220
Q gi|254780809|r 294 LEVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDL-------YSTYTEEYDHLISSFTGEGLEELINKIKSILSNKF 366 (440)
Q Consensus 294 ~~i~~aDlil~v~D~~~~~~~~~~~~~~~i~V~NK~Dl-------~~~~~~~~~~~ISaktg~Gi~~L~~~I~~~l~~~~ 366 (440)
.-++-++. +++.|..-+-| .+...++.. ..+-..-||+++++.+=+.+++
T Consensus 75 -LFQEnNLF------------------~HLTV~~NigLGl~PgLKLnA~q~ek~--~~~A~qvGi~dyl~RLP~~LSG-- 131 (213)
T TIGR01277 75 -LFQENNLF------------------AHLTVRQNIGLGLKPGLKLNAVQQEKV--EDVARQVGIDDYLERLPEELSG-- 131 (213)
T ss_pred -HHHHHCCC------------------CCHHHHHHHHCCCCCCCCCCHHHHHHH--HHHHHHCCHHHHHHHCCHHCCC--
T ss_conf -43221025------------------302488886537886410156778999--9999733857898725011167--
Q ss_pred CCCCCCEEHHHHHHHHHHHHHHH----------------------HHHH--HHHCCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 35886320148999999999999----------------------9999--75327998014659999999863567
Q gi|254780809|r 367 KKLPFSIPSHKRHLYHLSQTVRY----------------------LEMA--SLNEKDCGLDIIAENLRLASVSLGKI 419 (440)
Q Consensus 367 ~~~~~~i~~~~Rq~~~L~~a~~~----------------------L~~~--~~~~~~~~~EliAeeLr~A~~~L~eI 419 (440)
-+|||-+|.+|+-. |-.. .-.+++..+=++++.+.+|....+++
T Consensus 132 ---------GQrQRVALARClvr~~PIlLLDEPFSALDp~LR~EMLaLv~~lc~e~~~TllmVtH~~sda~~ia~q~ 199 (213)
T TIGR01277 132 ---------GQRQRVALARCLVREKPILLLDEPFSALDPKLREEMLALVKKLCDEKKLTLLMVTHSLSDAAAIASQV 199 (213)
T ss_pred ---------CHHHHHHHHHHHCCCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHEE
T ss_conf ---------33789999886417887300158811226788999999999765103646899845889998766204
No 388
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=96.41 E-value=0.053 Score=33.67 Aligned_cols=132 Identities=27% Similarity=0.349 Sum_probs=74.5
Q ss_pred HCCCHHHHHHHHHHHHHHHHH--HHCCCEEEECCCCCCHHHHHHHHHC------CHHCCCC-------------------
Q ss_conf 010001121233322345543--2023024311466318889999855------2000234-------------------
Q gi|254780809|r 196 ILFLKNDISSHISQGKLGEII--RNGYKIVILGHSNAGKSSLFNALAK------KDVAIVT------------------- 248 (440)
Q Consensus 196 i~~i~~~l~~ll~~~~~~~~l--~~g~~v~i~G~pN~GKSSL~N~L~~------~~~aIVs------------------- 248 (440)
+.-+..+|-+++......-.+ +....|.++|.--+||.|-.-.|.. ++..+|+
T Consensus 75 iKiV~eELv~llG~~~~~l~l~~~~P~vImmvGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpAA~eQL~~La~q~ 154 (451)
T COG0541 75 IKIVYEELVKLLGGENSELNLAKKPPTVILMVGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPAAIEQLKQLAEQV 154 (451)
T ss_pred HHHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEECCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCHHHHHHHHHHHHHC
T ss_conf 99999999998488876650378998589998156797486899999999974994589850567868999999999860
Q ss_pred ---CCC-CCCEEECCC------CCCCCCEEEEEEECCHHCCCCH-HHHHHHHHHHHHHHHHHCCEEECCCCCCHHHH---
Q ss_conf ---546-872110001------2456835899950810002410-35666678889985030110201358985663---
Q gi|254780809|r 249 ---DIP-GTTRDVLTI------DLDLEGYLVKISDTAGIRETDD-IVEKEGIKRTFLEVENADLILLLKEINSKKEI--- 314 (440)
Q Consensus 249 ---~~~-GTTRD~i~~------~~~i~g~~~~l~DTaGir~t~d-~IE~~GI~ra~~~i~~aDlil~v~D~~~~~~~--- 314 (440)
=++ ++-.|.++. ...-.++.+.++||||=...++ ..+.+ +..+.+-+.|=+|+|+|+..-++.
T Consensus 155 ~v~~f~~~~~~~Pv~Iak~al~~ak~~~~DvvIvDTAGRl~ide~Lm~El---~~Ik~~~~P~E~llVvDam~GQdA~~~ 231 (451)
T COG0541 155 GVPFFGSGTEKDPVEIAKAALEKAKEEGYDVVIVDTAGRLHIDEELMDEL---KEIKEVINPDETLLVVDAMIGQDAVNT 231 (451)
T ss_pred CCCEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHH---HHHHHHCCCCEEEEEEECCCCHHHHHH
T ss_conf 98531677889979999999999997499889996887330309999999---999855398748998764445678999
Q ss_pred --HHHCCCCC-CCCCCCCC
Q ss_conf --43128985-32222333
Q gi|254780809|r 315 --SFPKNIDF-IFIGTKSD 330 (440)
Q Consensus 315 --~~~~~~~~-i~V~NK~D 330 (440)
.+.+..++ =+|++|.|
T Consensus 232 A~aF~e~l~itGvIlTKlD 250 (451)
T COG0541 232 AKAFNEALGITGVILTKLD 250 (451)
T ss_pred HHHHHHHCCCCEEEEECCC
T ss_conf 9998662698649997146
No 389
>pfam00625 Guanylate_kin Guanylate kinase.
Probab=96.40 E-value=0.0034 Score=41.98 Aligned_cols=54 Identities=24% Similarity=0.242 Sum_probs=41.7
Q ss_pred EEEECCCCCCHHHHHHHHHCCHH-CCCCCCCCCCEEECCCCCCCCCEEEEEEECCHH
Q ss_conf 24311466318889999855200-023454687211000124568358999508100
Q gi|254780809|r 222 IVILGHSNAGKSSLFNALAKKDV-AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277 (440)
Q Consensus 222 v~i~G~pN~GKSSL~N~L~~~~~-aIVs~~~GTTRD~i~~~~~i~g~~~~l~DTaGi 277 (440)
++|+||+.+||+||+++|+.+.. .+...++-|||..-. -+.+|..+.+++-.=+
T Consensus 4 ivl~GPSG~GK~tl~~~L~~~~~~~~~~~vs~TTR~~R~--~E~~G~dY~Fvs~~~F 58 (182)
T pfam00625 4 IVLSGPSGVGKSHIKKALLDEYPEKFGYSVSHTTRPPRP--GEVDGKDYHFVSKEEM 58 (182)
T ss_pred EEEECCCCCCHHHHHHHHHHHCCCCEEEEEEEECCCCCC--CCCCCCEEEEECHHHH
T ss_conf 999898999999999999984866734457655479998--7878965799658999
No 390
>cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy.
Probab=96.40 E-value=0.0049 Score=40.82 Aligned_cols=51 Identities=27% Similarity=0.348 Sum_probs=36.8
Q ss_pred HHHCCCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCCEEECCCCCCCCCEEEEEEECCHHC
Q ss_conf 320230243114663188899998552000234546872110001245683589995081000
Q gi|254780809|r 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278 (440)
Q Consensus 216 l~~g~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTTRD~i~~~~~i~g~~~~l~DTaGir 278 (440)
+..|-.|+|+|++-+|||||++.|+|-.. +. ++.+.++|..+.-+|-.-+|
T Consensus 25 i~~G~~vaivG~sGsGKSTll~ll~gl~~----p~--------~G~I~i~g~di~~~~~~~~r 75 (237)
T cd03252 25 IKPGEVVGIVGRSGSGKSTLTKLIQRFYV----PE--------NGRVLVDGHDLALADPAWLR 75 (237)
T ss_pred ECCCCEEEEECCCCCHHHHHHHHHHCCCC----CC--------CCEEEECCEECCCCCHHHHH
T ss_conf 87999999999999859999999967765----79--------87899999995518999998
No 391
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.40 E-value=0.0046 Score=41.02 Aligned_cols=113 Identities=28% Similarity=0.275 Sum_probs=58.5
Q ss_pred CCEEEECCCCCCHHHHHHHHH------CCHHCCCCC---CCCC-----------------CEEE--CCCC----CCCCCE
Q ss_conf 302431146631888999985------520002345---4687-----------------2110--0012----456835
Q gi|254780809|r 220 YKIVILGHSNAGKSSLFNALA------KKDVAIVTD---IPGT-----------------TRDV--LTID----LDLEGY 267 (440)
Q Consensus 220 ~~v~i~G~pN~GKSSL~N~L~------~~~~aIVs~---~~GT-----------------TRD~--i~~~----~~i~g~ 267 (440)
-.|+++|++-+||+|-+-.|. +++.++|+- .||. .+|. +... -.-.++
T Consensus 76 ~vI~lvG~~G~GKTTT~AKLA~~~~~~~~kV~lia~DtyR~aA~eQLk~~a~~l~v~~~~~~~~~~~~~~~~~~~~~~~~ 155 (270)
T PRK06731 76 QTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEARV 155 (270)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHHHHHHHHHHCCCEECCCCHHHHHHHHHHHHHHCCC
T ss_conf 18999888989889999999999986799089998388888899999999998199535458878999999999997699
Q ss_pred EEEEEECCHHCCC-CHHHHHHHHHHHHHHHHHHCCEEECCCCCCH-HH-H---HHHCCCC-CCCCCCCCCCCCCC
Q ss_conf 8999508100024-1035666678889985030110201358985-66-3---4312898-53222233344654
Q gi|254780809|r 268 LVKISDTAGIRET-DDIVEKEGIKRTFLEVENADLILLLKEINSK-KE-I---SFPKNID-FIFIGTKSDLYSTY 335 (440)
Q Consensus 268 ~~~l~DTaGir~t-~d~IE~~GI~ra~~~i~~aDlil~v~D~~~~-~~-~---~~~~~~~-~i~V~NK~Dl~~~~ 335 (440)
.+.|+||||-... .+.++.+ .+. ......|.+++|+|++.. .+ . ...+..+ .=++++|.|-....
T Consensus 156 DvilIDTAGR~~~d~~lm~el--~~~-~~~~~p~~~~Lvldas~~~~~~~~~~~~f~~~~i~gvIlTKlD~ta~g 227 (270)
T PRK06731 156 DYILIDTAGKNYRASETVEEM--IET-MGQVEPDYICLTLSASMKSKDMIEIITNFKDIHIDGIVFTKFDETASS 227 (270)
T ss_pred CEEEEECCCCCCCCHHHHHHH--HHH-HCCCCCCEEEEEEECCCCHHHHHHHHHHHCCCCCCEEEEECCCCCCCC
T ss_conf 999997999871469999999--998-606389879999868777699999999807799988999653589977
No 392
>KOG1249 consensus
Probab=96.34 E-value=0.0019 Score=43.63 Aligned_cols=35 Identities=49% Similarity=0.762 Sum_probs=21.8
Q ss_pred CEEEECCCCCCHHHHHHHHHCCH-----------HCCCCCCCCCCE
Q ss_conf 02431146631888999985520-----------002345468721
Q gi|254780809|r 221 KIVILGHSNAGKSSLFNALAKKD-----------VAIVTDIPGTTR 255 (440)
Q Consensus 221 ~v~i~G~pN~GKSSL~N~L~~~~-----------~aIVs~~~GTTR 255 (440)
.+-++|..|||||++||.|+..| +|-.++.||||-
T Consensus 215 df~lvg~tnvgks~~fn~ll~sD~c~~~~p~lVd~aT~~dwpgTtl 260 (572)
T KOG1249 215 DFYLVGATNVGKSTLFNALLESDLCSVNAPKLVDRATISDWPGTTL 260 (572)
T ss_pred CEEEEEECCCCHHHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCC
T ss_conf 6443210002403678887641124456562044420136873203
No 393
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.29 E-value=0.013 Score=37.98 Aligned_cols=139 Identities=24% Similarity=0.199 Sum_probs=71.7
Q ss_pred HCCCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCCEEECCCCCCCCCE--EEEEEECC-H------------HC---C
Q ss_conf 02302431146631888999985520002345468721100012456835--89995081-0------------00---2
Q gi|254780809|r 218 NGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGY--LVKISDTA-G------------IR---E 279 (440)
Q Consensus 218 ~g~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTTRD~i~~~~~i~g~--~~~l~DTa-G------------ir---~ 279 (440)
.-++|.|.|+|-||||||.-.+..+=+.- .-+--.++...+.-+|. -|.++|.+ | .| .
T Consensus 4 ~~mki~ITG~PGvGKtTl~~ki~e~L~~~----g~kvgGf~t~EVR~gGkR~GF~Ivdl~tg~~~~la~~~~~~~rvGkY 79 (179)
T COG1618 4 MAMKIFITGRPGVGKTTLVLKIAEKLREK----GYKVGGFITPEVREGGKRIGFKIVDLATGEEGILARVGFSRPRVGKY 79 (179)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHC----CCEEEEEEEEEEECCCEEEEEEEEECCCCCEEEEEECCCCCCCCCEE
T ss_conf 54599986799845899999999999855----96651398311420882751599981479557988847887621047
Q ss_pred --CCHHHHHHHHHHHHHHHHHHCCEEECCCCC------CHHH-----HHHHCCCCCCCCCCCCCCCC---CCCHHHHHHH
Q ss_conf --410356666788899850301102013589------8566-----34312898532222333446---5420000013
Q gi|254780809|r 280 --TDDIVEKEGIKRTFLEVENADLILLLKEIN------SKKE-----ISFPKNIDFIFIGTKSDLYS---TYTEEYDHLI 343 (440)
Q Consensus 280 --t~d~IE~~GI~ra~~~i~~aDlil~v~D~~------~~~~-----~~~~~~~~~i~V~NK~Dl~~---~~~~~~~~~I 343 (440)
-.+..|..++.--..+.+.||+++. |-- ++.. ......+|+|.++-+.+..+ ........++
T Consensus 80 ~V~v~~le~i~~~al~rA~~~aDvIII--DEIGpMElks~~f~~~ve~vl~~~kpliatlHrrsr~P~v~~ik~~~~v~v 157 (179)
T COG1618 80 GVNVEGLEEIAIPALRRALEEADVIII--DEIGPMELKSKKFREAVEEVLKSGKPLIATLHRRSRHPLVQRIKKLGGVYV 157 (179)
T ss_pred EEEHHHHHHHHHHHHHHHHHCCCEEEE--ECCCCHHHCCHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHCCCEEE
T ss_conf 862788899868999988634998999--433633020088999999996589937999962567758998642487799
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q ss_conf 33323235899999999963
Q gi|254780809|r 344 SSFTGEGLEELINKIKSILS 363 (440)
Q Consensus 344 Saktg~Gi~~L~~~I~~~l~ 363 (440)
= .|.++-+.+...|...+.
T Consensus 158 ~-lt~~NR~~i~~~Il~~L~ 176 (179)
T COG1618 158 F-LTPENRNRILNEILSVLK 176 (179)
T ss_pred E-ECCCHHHHHHHHHHHHHC
T ss_conf 9-751215679999999852
No 394
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=96.14 E-value=0.011 Score=38.51 Aligned_cols=45 Identities=29% Similarity=0.315 Sum_probs=34.2
Q ss_pred HHHCCCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCCEEECCCCCCCCCEEEEEE
Q ss_conf 320230243114663188899998552000234546872110001245683589995
Q gi|254780809|r 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKIS 272 (440)
Q Consensus 216 l~~g~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTTRD~i~~~~~i~g~~~~l~ 272 (440)
+..|=.++|+|+.-+|||||++.|+|-.. + -++.+.++|.++.=+
T Consensus 27 i~~Ge~v~ivG~sGsGKSTLl~ll~gl~~----p--------~~G~I~i~g~~i~~~ 71 (221)
T cd03244 27 IKPGEKVGIVGRTGSGKSSLLLALFRLVE----L--------SSGSILIDGVDISKI 71 (221)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHHCCCC----C--------CCCEEEECCEECCCC
T ss_conf 86998999999999989999999967971----8--------984899999996619
No 395
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=96.11 E-value=0.006 Score=40.25 Aligned_cols=55 Identities=24% Similarity=0.253 Sum_probs=43.1
Q ss_pred CEEEECCCCCCHHHHHHHHHCCHH-CCCCCCCCCCEEECCCCCCCCCEEEEEEECCHH
Q ss_conf 024311466318889999855200-023454687211000124568358999508100
Q gi|254780809|r 221 KIVILGHSNAGKSSLFNALAKKDV-AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277 (440)
Q Consensus 221 ~v~i~G~pN~GKSSL~N~L~~~~~-aIVs~~~GTTRD~i~~~~~i~g~~~~l~DTaGi 277 (440)
-++++||+.|||+||.+.|+.... .....++-|||-.-.. +.+|..+.+++..=+
T Consensus 4 ~iil~Gpsg~GK~tl~~~l~~~~~~~~~~~v~~TTR~~r~g--E~~G~dY~Fvs~~~F 59 (184)
T smart00072 4 PIVLSGPSGVGKGTLLAELIQEIPDAFERVVSHTTRPPRPG--EVNGVDYHFVSREEF 59 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCEEEEEEEECCCCCCC--CCCCCEEEEEEHHHH
T ss_conf 79999999999999999998639645057787672799889--999963699717999
No 396
>pfam02492 cobW CobW/HypB/UreG, nucleotide-binding domain. This domain is found in HypB, a hydrogenase expression / formation protein, and UreG a urease accessory protein. Both these proteins contain a P-loop nucleotide binding motif. HypB has GTPase activity and is a guanine nucleotide binding protein. It is not known whether UreG binds GTP or some other nucleotide. Both enzymes are involved in nickel binding. HypB can store nickel and is required for nickel dependent hydrogenase expression. UreG is required for functional incorporation of the urease nickel metallocenter. GTP hydrolysis may required by these proteins for nickel incorporation into other nickel proteins. This family of domains also contains P47K, a Pseudomonas chlororaphis protein needed for nitrile hydratase expression, and the cobW gene product, which may be involved in cobalamin biosynthesis in Pseudomonas denitrificans.
Probab=96.10 E-value=0.005 Score=40.81 Aligned_cols=34 Identities=26% Similarity=0.483 Sum_probs=24.8
Q ss_pred CEEEECCCCCCHHHHHHHHHCC-----HHCCCCCCCCCC
Q ss_conf 0243114663188899998552-----000234546872
Q gi|254780809|r 221 KIVILGHSNAGKSSLFNALAKK-----DVAIVTDIPGTT 254 (440)
Q Consensus 221 ~v~i~G~pN~GKSSL~N~L~~~-----~~aIVs~~~GTT 254 (440)
.+.|.|.+-+||+||+|+|+.. +.|++-+.-|.+
T Consensus 2 v~iitGFLGsGKTTll~~ll~~~~~~~~~avI~Ne~g~~ 40 (174)
T pfam02492 2 VTVLTGFLGSGKTTLLEHLLRDNREGLKIAVIVNDFGET 40 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHCCCCCCEEEEEECCCCH
T ss_conf 699934887889999999998444898479999336530
No 397
>cd03288 ABCC_SUR2 The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=96.07 E-value=0.011 Score=38.51 Aligned_cols=43 Identities=28% Similarity=0.320 Sum_probs=33.2
Q ss_pred HHHCCCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCCEEECCCCCCCCCEEEE
Q ss_conf 3202302431146631888999985520002345468721100012456835899
Q gi|254780809|r 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVK 270 (440)
Q Consensus 216 l~~g~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTTRD~i~~~~~i~g~~~~ 270 (440)
+..|=+|+|+|+..+|||||++.|+|-.. + .++.+.++|.++.
T Consensus 44 I~~Ge~vaIvG~sGsGKSTL~~ll~gl~~----p--------~~G~I~idg~di~ 86 (257)
T cd03288 44 IKPGQKVGICGRTGSGKSSLSLAFFRMVD----I--------FDGKIVIDGIDIS 86 (257)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHHHCCC----C--------CCCEEEECCEEHH
T ss_conf 87999999999999819999999960566----7--------8888999989968
No 398
>cd03289 ABCC_CFTR2 The CFTR subfamily domain 2. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=96.01 E-value=0.011 Score=38.54 Aligned_cols=27 Identities=33% Similarity=0.636 Sum_probs=24.2
Q ss_pred HHHCCCEEEECCCCCCHHHHHHHHHCC
Q ss_conf 320230243114663188899998552
Q gi|254780809|r 216 IRNGYKIVILGHSNAGKSSLFNALAKK 242 (440)
Q Consensus 216 l~~g~~v~i~G~pN~GKSSL~N~L~~~ 242 (440)
+..|=+|+|+|+.-+|||||++.|+|-
T Consensus 27 I~~Ge~vaIvG~sGsGKSTLl~lL~gl 53 (275)
T cd03289 27 ISPGQRVGLLGRTGSGKSTLLSAFLRL 53 (275)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 879999999999999799999999603
No 399
>pfam05783 DLIC Dynein light intermediate chain (DLIC). This family consists of several eukaryotic dynein light intermediate chain proteins. The light intermediate chains (LICs) of cytoplasmic dynein consist of multiple isoforms, which undergo post-translational modification to produce a large number of species. DLIC1 is known to be involved in assembly, organisation, and function of centrosomes and mitotic spindles when bound to pericentrin. DLIC2 is a subunit of cytoplasmic dynein 2 that may play a role in maintaining Golgi organisation by binding cytoplasmic dynein 2 to its Golgi-associated cargo.
Probab=95.99 E-value=0.012 Score=38.04 Aligned_cols=33 Identities=21% Similarity=0.482 Sum_probs=27.1
Q ss_pred HHHHHHHHCCCEEEECCCCCCHHHHHHHHHCCH
Q ss_conf 345543202302431146631888999985520
Q gi|254780809|r 211 KLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243 (440)
Q Consensus 211 ~~~~~l~~g~~v~i~G~pN~GKSSL~N~L~~~~ 243 (440)
+.+..+-++-.|.+.|-+.+|||||+.+|-|.+
T Consensus 37 ~s~~kLps~K~ILVLGd~~sGKttLi~kLQg~e 69 (490)
T pfam05783 37 RSRSKLPSGKNVLVLGEDGSGKTTLIAKLQGVE 69 (490)
T ss_pred HCCCCCCCCCEEEEECCCCCCHHHHHHHHCCCC
T ss_conf 302558888728997789875589998852744
No 400
>TIGR00955 3a01204 Pigment precourser permease; InterPro: IPR005284 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family includes different parts of a membrane-spanning permease system necessary for the transport of pigment precursor into pigment cells responsible for eye color. White protein dimerises with brown protein for the transport of guanine and with scarlet protein for the transport of tryptophan.; GO: 0006810 transport.
Probab=95.98 E-value=0.0066 Score=39.96 Aligned_cols=45 Identities=33% Similarity=0.457 Sum_probs=34.3
Q ss_pred HHHCCCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCCEEECCCC-CCCCCEEE
Q ss_conf 3202302431146631888999985520002345468721100012-45683589
Q gi|254780809|r 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTID-LDLEGYLV 269 (440)
Q Consensus 216 l~~g~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTTRD~i~~~-~~i~g~~~ 269 (440)
.+.|==+||.|..-||||||||+|..+.. +|.++ ... +.+||.++
T Consensus 55 a~~GeLlA~mGsSGAGKTTLmn~La~R~~------~g~~~---~g~~v~lNG~~~ 100 (671)
T TIGR00955 55 AKPGELLAIMGSSGAGKTTLMNALAFRSP------KGLKV---SGSVVLLNGRPI 100 (671)
T ss_pred ECCCEEEEEECCCCCCHHHHHHHHHCCCC------CCCEE---CCCEEEECCEEC
T ss_conf 10670689847876626899999853374------78614---683678758375
No 401
>PRK11537 putative GTP-binding protein YjiA; Provisional
Probab=95.95 E-value=0.02 Score=36.54 Aligned_cols=115 Identities=17% Similarity=0.192 Sum_probs=60.9
Q ss_pred CCEEEECCCCCCHHHHHHHHHC----CHHCCCCCCCCCCE-E--EC----CCCCCCC-----------------------
Q ss_conf 3024311466318889999855----20002345468721-1--00----0124568-----------------------
Q gi|254780809|r 220 YKIVILGHSNAGKSSLFNALAK----KDVAIVTDIPGTTR-D--VL----TIDLDLE----------------------- 265 (440)
Q Consensus 220 ~~v~i~G~pN~GKSSL~N~L~~----~~~aIVs~~~GTTR-D--~i----~~~~~i~----------------------- 265 (440)
+-.+|.|.--+||+||+|+|+. ++.|++=+.=|..- | .+ +..+.+.
T Consensus 5 PVtiltGFLGaGKTTlL~~lL~~~~~~riaVivNEfGev~iD~~li~~~~~~v~eL~nGCiCCs~~~dl~~~l~~l~~~~ 84 (317)
T PRK11537 5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLDNL 84 (317)
T ss_pred CEEEEEECCCCCHHHHHHHHHHCCCCCCEEEEEECCCCCCCHHHHHHCCCCCEEEECCCCEEEEECCHHHHHHHHHHHHH
T ss_conf 88998308888999999999727789978999837614533298873565326884477368730522899999999866
Q ss_pred ---C--EEEEEEECCHHCCCCHHHHHHHHHHHHHHHHHHCCEEECCCCCCHHHH--------HHHCCCCCCCCCCCCCCC
Q ss_conf ---3--589995081000241035666678889985030110201358985663--------431289853222233344
Q gi|254780809|r 266 ---G--YLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEI--------SFPKNIDFIFIGTKSDLY 332 (440)
Q Consensus 266 ---g--~~~~l~DTaGir~t~d~IE~~GI~ra~~~i~~aDlil~v~D~~~~~~~--------~~~~~~~~i~V~NK~Dl~ 332 (440)
+ ....++-|-|+-+....++..--...+..--.-|-++-|+|+.+.... ......+ ++++||+|+.
T Consensus 85 ~~~~~~~D~IiIEtsGlAdP~~I~~~~~~~~~l~~~~~Ld~vVtvVDa~~~~~~l~~~~~~~~Qi~~AD-~illnK~Dlv 163 (317)
T PRK11537 85 DRGNIQFDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVGYAD-RILLTKTDVA 163 (317)
T ss_pred HCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHEECCCEEEEEEHHHHHHHHHCCHHHHHHHHHCC-EEEEECCCCC
T ss_conf 435777547999625778839999998612565653203655999866555766530346676663186-8997420023
Q ss_pred CCC
Q ss_conf 654
Q gi|254780809|r 333 STY 335 (440)
Q Consensus 333 ~~~ 335 (440)
+..
T Consensus 164 ~~~ 166 (317)
T PRK11537 164 GEA 166 (317)
T ss_pred CHH
T ss_conf 659
No 402
>KOG0065 consensus
Probab=95.94 E-value=0.0045 Score=41.12 Aligned_cols=47 Identities=26% Similarity=0.460 Sum_probs=39.6
Q ss_pred HHHHHCCCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCCEEECCCCCCCCCEEEE
Q ss_conf 543202302431146631888999985520002345468721100012456835899
Q gi|254780809|r 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVK 270 (440)
Q Consensus 214 ~~l~~g~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTTRD~i~~~~~i~g~~~~ 270 (440)
-..+.|.-.||.|..-|||+||+|.|.|+. |.-+|++.+.++|.|..
T Consensus 812 G~~kPG~LTALMG~SGAGKTTLLdvLA~R~----------t~G~I~Gdi~i~G~p~~ 858 (1391)
T KOG0065 812 GAFKPGVLTALMGESGAGKTTLLDVLAGRK----------TGGYIEGDILISGFPKD 858 (1391)
T ss_pred EEECCCCEEEHHCCCCCCHHHHHHHHHCCC----------CCCEEEEEEEECCEECC
T ss_conf 686478364012477876577999985674----------46568757898883273
No 403
>COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones]
Probab=95.91 E-value=0.0035 Score=41.86 Aligned_cols=132 Identities=22% Similarity=0.293 Sum_probs=76.1
Q ss_pred HHHHCCCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCCEEECCCCCCCCCEEEEEEECCHHCCCCHHHHHHHHHHHHH
Q ss_conf 43202302431146631888999985520002345468721100012456835899950810002410356666788899
Q gi|254780809|r 215 IIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFL 294 (440)
Q Consensus 215 ~l~~g~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTTRD~i~~~~~i~g~~~~l~DTaGir~t~d~IE~~GI~ra~~ 294 (440)
.++.|=+|+|+|+.-+|||||++-++|.- |+-.+++.++|.++.-+|..-+|++-.
T Consensus 360 ~l~~GEkvAIlG~SGsGKSTllqLl~~~~------------~~~~G~i~~~g~~~~~l~~~~~~e~i~------------ 415 (573)
T COG4987 360 TLAQGEKVAILGRSGSGKSTLLQLLAGAW------------DPQQGSITLNGVEIASLDEQALRETIS------------ 415 (573)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHHHCC------------CCCCCEEEECCCCHHHCCHHHHHHHHH------------
T ss_conf 32588768887799987899999997235------------878873657886733188366899875------------
Q ss_pred HHHHHCCEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEE
Q ss_conf 85030110201358985663431289853222233344654200000133332323589999999996322035886320
Q gi|254780809|r 295 EVENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSIP 374 (440)
Q Consensus 295 ~i~~aDlil~v~D~~~~~~~~~~~~~~~i~V~NK~Dl~~~~~~~~~~~ISaktg~Gi~~L~~~I~~~l~~~~~~~~~~i~ 374 (440)
-+.+. .++++.+=.+.+. .. |-| ..+ .-..-+...-|+.++.+..-+-+..........+.
T Consensus 416 vl~Qr---~hlF~~Tlr~NL~---------lA-~~~-----AsD-Eel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LS 476 (573)
T COG4987 416 VLTQR---VHLFSGTLRDNLR---------LA-NPD-----ASD-EELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLS 476 (573)
T ss_pred HHCCC---HHHHHHHHHHHHH---------HC-CCC-----CCH-HHHHHHHHHCCHHHHHHHCHHHHHCHHCCCCCCCC
T ss_conf 41232---1777778998773---------05-999-----988-99999999818799987473534222225997478
Q ss_pred HHHHHHHHHHHHHHH
Q ss_conf 148999999999999
Q gi|254780809|r 375 SHKRHLYHLSQTVRY 389 (440)
Q Consensus 375 ~~~Rq~~~L~~a~~~ 389 (440)
--+|++-++.+++-+
T Consensus 477 GGE~rRLAlAR~LL~ 491 (573)
T COG4987 477 GGERRRLALARALLH 491 (573)
T ss_pred CHHHHHHHHHHHHHC
T ss_conf 138999999999970
No 404
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=95.90 E-value=0.0053 Score=40.62 Aligned_cols=47 Identities=26% Similarity=0.285 Sum_probs=35.2
Q ss_pred HHHCCCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCCEEECCCCCCCCCEEEEEEEC
Q ss_conf 32023024311466318889999855200023454687211000124568358999508
Q gi|254780809|r 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDT 274 (440)
Q Consensus 216 l~~g~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTTRD~i~~~~~i~g~~~~l~DT 274 (440)
+..|-.++|+|+.-+|||||++.|+|... +. ++.+.++|.++.-++.
T Consensus 25 i~~G~~vaIvG~sGsGKSTLl~ll~gl~~----p~--------~G~i~i~g~~~~~~~~ 71 (173)
T cd03246 25 IEPGESLAIIGPSGSGKSTLARLILGLLR----PT--------SGRVRLDGADISQWDP 71 (173)
T ss_pred ECCCCEEEEECCCCCHHHHHHHHHHCCCC----CC--------CCEEEECCEECCCCCH
T ss_conf 85999999999999809999999966666----79--------9989999999332899
No 405
>PRK13695 putative NTPase; Provisional
Probab=95.88 E-value=0.024 Score=36.03 Aligned_cols=24 Identities=29% Similarity=0.426 Sum_probs=21.1
Q ss_pred CCCEEEECCCCCCHHHHHHHHHCC
Q ss_conf 230243114663188899998552
Q gi|254780809|r 219 GYKIVILGHSNAGKSSLFNALAKK 242 (440)
Q Consensus 219 g~~v~i~G~pN~GKSSL~N~L~~~ 242 (440)
-++|.|.|+|.+|||||+..++..
T Consensus 3 ~~kI~iTG~PGvGKTTli~Kv~~~ 26 (174)
T PRK13695 3 ALRIGITGMPGVGKTTLVLKIAEL 26 (174)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 429998789998899999999999
No 406
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=95.87 E-value=0.11 Score=31.58 Aligned_cols=65 Identities=28% Similarity=0.335 Sum_probs=43.6
Q ss_pred HHHHHHHHHCCCEEEECCCCCCHHHHHHHHHC-CHHCCCCCCCCCC---------EEECCCCCCCCCEEEEEEEC
Q ss_conf 23455432023024311466318889999855-2000234546872---------11000124568358999508
Q gi|254780809|r 210 GKLGEIIRNGYKIVILGHSNAGKSSLFNALAK-KDVAIVTDIPGTT---------RDVLTIDLDLEGYLVKISDT 274 (440)
Q Consensus 210 ~~~~~~l~~g~~v~i~G~pN~GKSSL~N~L~~-~~~aIVs~~~GTT---------RD~i~~~~~i~g~~~~l~DT 274 (440)
...|..+|--+.|.|+|.|-+|||-|+-.+.+ .-|++.+.-.|+| ||.....+.+.+--+.+.|.
T Consensus 310 ~~~g~~iRGDInILLvGDPgtaKSqlLk~v~~~aPr~vytsgkgss~~GLTAav~rd~~tge~~LeaGALVlAD~ 384 (682)
T COG1241 310 LPDGTRIRGDIHILLVGDPGTAKSQLLKYVAKLAPRGVYTSGKGSSAAGLTAAVVRDKVTGEWVLEAGALVLADG 384 (682)
T ss_pred CCCCCCCCCCEEEEECCCCCHHHHHHHHHHHHHCCCEEEECCCCCCCCCCEEEEEECCCCCEEEEECCEEEEECC
T ss_conf 799862024226998179825199999998864884079726412545730699970677607886777999249
No 407
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.86 E-value=0.0063 Score=40.09 Aligned_cols=44 Identities=27% Similarity=0.518 Sum_probs=31.8
Q ss_pred HHHHCCCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCCEEECCCCCCCCCEE
Q ss_conf 432023024311466318889999855200023454687211000124568358
Q gi|254780809|r 215 IIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL 268 (440)
Q Consensus 215 ~l~~g~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTTRD~i~~~~~i~g~~ 268 (440)
.+..|-.++|+||.-+|||||+|.|+|.. .+|. ++..+.++|.+
T Consensus 29 ~i~~Ge~~~llGpnGaGKSTLl~~l~g~~------~~~~----~~G~i~~~g~~ 72 (192)
T cd03232 29 YVKPGTLTALMGESGAGKTTLLDVLAGRK------TAGV----ITGEILINGRP 72 (192)
T ss_pred EEECCEEEEEECCCCCCHHHHHHHHHCCC------CCCC----EEEEEEECCEE
T ss_conf 99288399999999998899999983798------7883----17899987827
No 408
>COG0404 GcvT Glycine cleavage system T protein (aminomethyltransferase) [Amino acid transport and metabolism]
Probab=95.85 E-value=0.06 Score=33.31 Aligned_cols=76 Identities=22% Similarity=0.318 Sum_probs=47.5
Q ss_pred CCCEEEEECCCHHHHHHHHHHHCCCCCC--CCEEEEEEEECCCCCEEEEEEEEEECCCCCCCCCCEEEEEECCCHHHHHH
Q ss_conf 7616999727388999999871668888--75389988754898672069999956779988775399980898788999
Q gi|254780809|r 17 PSAISIIRLSGPSCFQVCEFICKKKKPF--PRKASLRYFFGLDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNG 94 (440)
Q Consensus 17 ~~aiaviRiSG~~~~~i~~~~~~~~~~~--~~~~~~~~~~~~~~~~iD~~l~~~f~~P~SyTGEDvvEi~~HG~~~i~~~ 94 (440)
.|..+.|+|+||++...++.++....++ |.++.|..+.+.+|-++|+.++.. .||| ++..-+|.+...+
T Consensus 53 vShmgk~~V~GpdA~~~L~~l~~ndv~kl~~Gr~~Yt~~lne~G~v~dD~~v~r-------l~~d--~f~lv~~a~~~~~ 123 (379)
T COG0404 53 VSHMGKVEVSGPDAAAFLQRLLTNDVSKLKPGRARYTLMLNEDGGIIDDLIVYR-------LGED--RFFLVTNAATAEK 123 (379)
T ss_pred CCCCEEEEEECCCHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCCEEEEEEEEE-------ECCC--EEEEEECCCCHHH
T ss_conf 468569999898999999977056667677774887245879998874179997-------2698--6999947666288
Q ss_pred HHHHHHH
Q ss_conf 9998754
Q gi|254780809|r 95 ILEELAK 101 (440)
Q Consensus 95 il~~l~~ 101 (440)
.++.+..
T Consensus 124 ~~~~l~~ 130 (379)
T COG0404 124 DLAWLER 130 (379)
T ss_pred HHHHHHH
T ss_conf 9999987
No 409
>TIGR00101 ureG urease accessory protein UreG; InterPro: IPR004400 This is a GTP hydrolase for assembly of the nickel metallocentre of urease. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel. They play a central role in nitrogen metabolism.; GO: 0005524 ATP binding, 0016151 nickel ion binding.
Probab=95.84 E-value=0.035 Score=34.95 Aligned_cols=116 Identities=25% Similarity=0.280 Sum_probs=66.0
Q ss_pred CCEEEECCCCCCHHHHHHHHHC-----CHHCCCCCCCCCCEE--ECCCCCCCCCEEEEEEECCH-----HCCCCHHHHHH
Q ss_conf 3024311466318889999855-----200023454687211--00012456835899950810-----00241035666
Q gi|254780809|r 220 YKIVILGHSNAGKSSLFNALAK-----KDVAIVTDIPGTTRD--VLTIDLDLEGYLVKISDTAG-----IRETDDIVEKE 287 (440)
Q Consensus 220 ~~v~i~G~pN~GKSSL~N~L~~-----~~~aIVs~~~GTTRD--~i~~~~~i~g~~~~l~DTaG-----ir~t~d~IE~~ 287 (440)
+++.+.||..+||+.|+.+|+. ++.|+|++---|.-| .+...-.+..-.+.=+.|.| ||+... +.-.
T Consensus 2 ~~iG~~GPvG~Gktal~e~l~~~~~~~y~~av~tndiyt~eda~fl~~~~~l~~~ri~GvetGGCPhtairedas-~nl~ 80 (199)
T TIGR00101 2 VKIGVAGPVGSGKTALIEALTRELAKKYDLAVITNDIYTQEDAEFLVKNSVLPPERILGVETGGCPHTAIREDAS-LNLE 80 (199)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCHHHHHHH-HHHH
T ss_conf 366650477764689999999988740667787311001246888876412662226774158987300100021-2188
Q ss_pred HHHHHHHHH---------------------HHHCCEEECCCCCCHHHHHHHCC----CCCCCCCCCCCCCCCCC
Q ss_conf 678889985---------------------03011020135898566343128----98532222333446542
Q gi|254780809|r 288 GIKRTFLEV---------------------ENADLILLLKEINSKKEISFPKN----IDFIFIGTKSDLYSTYT 336 (440)
Q Consensus 288 GI~ra~~~i---------------------~~aDlil~v~D~~~~~~~~~~~~----~~~i~V~NK~Dl~~~~~ 336 (440)
.|+.-.... +-+|+.+||+|....+.+...-+ +.-++|+||+||.+...
T Consensus 81 a~~~~~~rf~~~~~~~~esGGdnl~atf~P~l~d~t~~vidva~G~kiPrkGGPGit~sdllvink~dlaP~vG 154 (199)
T TIGR00101 81 AVEELEARFPDLELVFIESGGDNLSATFSPELADLTIFVIDVAEGDKIPRKGGPGITRSDLLVINKIDLAPFVG 154 (199)
T ss_pred HHHHHHHCCCCEEEEEEECCCCCCEEECCCCEEEEEEEEEEECCCCCCCCCCCCCCCCHHEEEEECCCCCCCCC
T ss_conf 99988621564048998328862000027640236788997205874567788985300122432001253112
No 410
>cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.82 E-value=0.0054 Score=40.53 Aligned_cols=51 Identities=24% Similarity=0.315 Sum_probs=36.3
Q ss_pred HHHCCCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCCEEECCCCCCCCCEEEEEEECCHHC
Q ss_conf 320230243114663188899998552000234546872110001245683589995081000
Q gi|254780809|r 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278 (440)
Q Consensus 216 l~~g~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTTRD~i~~~~~i~g~~~~l~DTaGir 278 (440)
+..|-+|+|+|+.-+|||||++.|+|--. +. ++.+.++|..+.-+|..-+|
T Consensus 24 i~~Ge~v~ivG~sGsGKSTLl~ll~gl~~----p~--------~G~I~idg~di~~~~~~~~r 74 (236)
T cd03253 24 IPAGKKVAIVGPSGSGKSTILRLLFRFYD----VS--------SGSILIDGQDIREVTLDSLR 74 (236)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHCCCCC----CC--------CCEEEECCEECCCCCHHHHH
T ss_conf 86999999999999989999999743854----88--------74899999992318999997
No 411
>COG0050 TufB GTPases - translation elongation factors [Translation, ribosomal structure and biogenesis]
Probab=95.71 E-value=0.042 Score=34.39 Aligned_cols=108 Identities=17% Similarity=0.228 Sum_probs=65.2
Q ss_pred CCCEEEECCCCCCHHHHHHHHHCCHH-----------CCC----CCCCCCCEEECCCCCCCCCEEEEEEECCHHCCCCHH
Q ss_conf 23024311466318889999855200-----------023----454687211000124568358999508100024103
Q gi|254780809|r 219 GYKIVILGHSNAGKSSLFNALAKKDV-----------AIV----TDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDI 283 (440)
Q Consensus 219 g~~v~i~G~pN~GKSSL~N~L~~~~~-----------aIV----s~~~GTTRD~i~~~~~i~g~~~~l~DTaGir~t~d~ 283 (440)
-+.|.-+|..|-||+||--++++.=. .|- -..-|-|-..-...++.....+-.+|.||-++-
T Consensus 12 hVNigtiGHvdHGKTTLtaAit~~la~~~~~~~~~y~~id~aPeEk~rGITIntahveyet~~rhyahVDcPGHaDY--- 88 (394)
T COG0050 12 HVNVGTIGHVDHGKTTLTAAITTVLAKKGGAEAKAYDQIDNAPEEKARGITINTAHVEYETANRHYAHVDCPGHADY--- 88 (394)
T ss_pred EEEEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCHHHHHCCCHHHHCCCEECCCEEEEECCCCEEEECCCCCHHHH---
T ss_conf 14787861424763528999999998632401033344304826764572540100588638814886168974899---
Q ss_pred HHHHHHHHHHHHHHHHCCEEECCCCCCHH------HHHHHC--CCC-CCCCCCCCCCCCC
Q ss_conf 56666788899850301102013589856------634312--898-5322223334465
Q gi|254780809|r 284 VEKEGIKRTFLEVENADLILLLKEINSKK------EISFPK--NID-FIFIGTKSDLYST 334 (440)
Q Consensus 284 IE~~GI~ra~~~i~~aDlil~v~D~~~~~------~~~~~~--~~~-~i~V~NK~Dl~~~ 334 (440)
| +.-+--+.+.|--++|+.+.+.. .+.+.+ +.| +++.+||+|+.+.
T Consensus 89 v-----KNMItgAaqmDgAILVVsA~dGpmPqTrEHiLlarqvGvp~ivvflnK~Dmvdd 143 (394)
T COG0050 89 V-----KNMITGAAQMDGAILVVAATDGPMPQTREHILLARQVGVPYIVVFLNKVDMVDD 143 (394)
T ss_pred H-----HHHHHHHHHCCCCEEEEECCCCCCCCCHHHHHHHHHCCCCEEEEEEECCCCCCC
T ss_conf 9-----987640775376289998478999860564201234288579999742236686
No 412
>KOG3905 consensus
Probab=95.69 E-value=0.017 Score=37.12 Aligned_cols=33 Identities=24% Similarity=0.531 Sum_probs=28.1
Q ss_pred HHHHHHHHCCCEEEECCCCCCHHHHHHHHHCCH
Q ss_conf 345543202302431146631888999985520
Q gi|254780809|r 211 KLGEIIRNGYKIVILGHSNAGKSSLFNALAKKD 243 (440)
Q Consensus 211 ~~~~~l~~g~~v~i~G~pN~GKSSL~N~L~~~~ 243 (440)
+...++-.|-.|.+.|.--+||+||+-.|-|.+
T Consensus 44 ~~~sklpsgk~VlvlGdn~sGKtsLi~klqg~e 76 (473)
T KOG3905 44 RTRSKLPSGKNVLVLGDNGSGKTSLISKLQGSE 76 (473)
T ss_pred CCCCCCCCCCEEEEECCCCCCHHHHHHHHHCCC
T ss_conf 345558899748997368886058888751565
No 413
>KOG0083 consensus
Probab=95.64 E-value=0.02 Score=36.61 Aligned_cols=131 Identities=26% Similarity=0.301 Sum_probs=75.8
Q ss_pred EECCCCCCHHHHHHHHHCCHHCCCCC-C-CCCCEEECCCCCCCCCE--EEEEEECCHHCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 31146631888999985520002345-4-68721100012456835--89995081000241035666678889985030
Q gi|254780809|r 224 ILGHSNAGKSSLFNALAKKDVAIVTD-I-PGTTRDVLTIDLDLEGY--LVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299 (440)
Q Consensus 224 i~G~pN~GKSSL~N~L~~~~~aIVs~-~-~GTTRD~i~~~~~i~g~--~~~l~DTaGir~t~d~IE~~GI~ra~~~i~~a 299 (440)
++|..-+||.-|+-+.- +-|-... . .-.--|+-..-++.++. +..+.||||- |+.- .-+-..-.+|
T Consensus 2 llgds~~gktcllir~k--dgafl~~~fistvgid~rnkli~~~~~kvklqiwdtagq-------erfr-svt~ayyrda 71 (192)
T KOG0083 2 LLGDSCTGKTCLLIRFK--DGAFLAGNFISTVGIDFRNKLIDMDDKKVKLQIWDTAGQ-------ERFR-SVTHAYYRDA 71 (192)
T ss_pred CCCCCCCCCEEEEEEEC--CCCEECCCEEEEEEECCCCCEECCCCCEEEEEEEECCCH-------HHHH-HHHHHHHCCC
T ss_conf 34567668568999951--674003761133200121304513883899998523145-------7775-5447663165
Q ss_pred CCEEECCCCCCHHHHHH-------H-----CCCCCCCCCCCCCCCCCCCH----------HH---HHHHHHHHHHHHHHH
Q ss_conf 11020135898566343-------1-----28985322223334465420----------00---001333323235899
Q gi|254780809|r 300 DLILLLKEINSKKEISF-------P-----KNIDFIFIGTKSDLYSTYTE----------EY---DHLISSFTGEGLEEL 354 (440)
Q Consensus 300 Dlil~v~D~~~~~~~~~-------~-----~~~~~i~V~NK~Dl~~~~~~----------~~---~~~ISaktg~Gi~~L 354 (440)
|-.|++.|..++...+. + ....+.++.||+|+...... .+ ....|||||-++|.-
T Consensus 72 ~allllydiankasfdn~~~wlsei~ey~k~~v~l~llgnk~d~a~er~v~~ddg~kla~~y~ipfmetsaktg~nvd~a 151 (192)
T KOG0083 72 DALLLLYDIANKASFDNCQAWLSEIHEYAKEAVALMLLGNKCDLAHERAVKRDDGEKLAEAYGIPFMETSAKTGFNVDLA 151 (192)
T ss_pred CEEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHCCCCCHHHHHHHHHCCCCEECCCCCCCCHHHH
T ss_conf 62554332113010778999999999998866767544253554123045653178899987997164033026437689
Q ss_pred HHHHHHHHHH
Q ss_conf 9999999632
Q gi|254780809|r 355 INKIKSILSN 364 (440)
Q Consensus 355 ~~~I~~~l~~ 364 (440)
.-.|.+.+.+
T Consensus 152 f~~ia~~l~k 161 (192)
T KOG0083 152 FLAIAEELKK 161 (192)
T ss_pred HHHHHHHHHH
T ss_conf 9999999997
No 414
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=95.63 E-value=0.0093 Score=38.92 Aligned_cols=28 Identities=32% Similarity=0.478 Sum_probs=24.4
Q ss_pred HHHHCCCEEEECCCCCCHHHHHHHHHCC
Q ss_conf 4320230243114663188899998552
Q gi|254780809|r 215 IIRNGYKIVILGHSNAGKSSLFNALAKK 242 (440)
Q Consensus 215 ~l~~g~~v~i~G~pN~GKSSL~N~L~~~ 242 (440)
.++.+..|+|.|+|++|||||+|+|++.
T Consensus 21 ~v~~~~nIlIsG~tGSGKTTll~al~~~ 48 (186)
T cd01130 21 AVEARKNILISGGTGSGKTTLLNALLAF 48 (186)
T ss_pred HHHCCCCEEEECCCCCCHHHHHHHHHHH
T ss_conf 9985998999899999899999999961
No 415
>KOG0054 consensus
Probab=95.60 E-value=0.014 Score=37.77 Aligned_cols=43 Identities=35% Similarity=0.465 Sum_probs=31.1
Q ss_pred HHHCCCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCCEEECCCCCCCCCEEEE
Q ss_conf 3202302431146631888999985520002345468721100012456835899
Q gi|254780809|r 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVK 270 (440)
Q Consensus 216 l~~g~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTTRD~i~~~~~i~g~~~~ 270 (440)
++.|-||.|+|++-+|||||.|+|..- +-.. ++.+.|+|+.+.
T Consensus 1163 I~p~eKVGIVGRTGaGKSSL~~aLFRl----~e~~--------~G~I~IDgvdI~ 1205 (1381)
T KOG0054 1163 IKPGEKVGIVGRTGAGKSSLILALFRL----VEPA--------EGEILIDGVDIS 1205 (1381)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHHHC----CCCC--------CCEEEECCEECC
T ss_conf 749976888689899889999999961----4765--------875998686525
No 416
>TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA; InterPro: IPR011917 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes .; GO: 0005524 ATP binding, 0006869 lipid transport, 0009276 1-2nm peptidoglycan-based cell wall, 0016021 integral to membrane.
Probab=95.57 E-value=0.042 Score=34.34 Aligned_cols=102 Identities=20% Similarity=0.220 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHHHHCCCCCCCHHHHHHHH-HHHHHCCCHHHH------HHHHHHHHHHHHHHHCCCEEEECCCCCCHHHH
Q ss_conf 76998886544431135443112332588-886401000112------12333223455432023024311466318889
Q gi|254780809|r 163 DKLTHIRSFIEADLDFSEEEDVQNFSSKE-VLNDILFLKNDI------SSHISQGKLGEIIRNGYKIVILGHSNAGKSSL 235 (440)
Q Consensus 163 ~~L~~~~a~iEa~IDF~dEedi~~~~~~~-~~~~i~~i~~~l------~~ll~~~~~~~~l~~g~~v~i~G~pN~GKSSL 235 (440)
++-+-..-.+-..+|=|+|.|--....+. +.-+++--.-.. .+.+++ -.=.+..|-.||||||.-+|||||
T Consensus 327 Q~gl~aAe~~F~~lD~~~E~D~G~~~~~RPv~G~~eFR~v~~~Yp~~~~~aL~~--i~l~~~~G~~vALVGRSGSGKsTl 404 (603)
T TIGR02203 327 QKGLAAAESVFTLLDSPPEKDTGTRALERPVRGRVEFRNVTFRYPGRDRPALDS--ISLVVEPGETVALVGRSGSGKSTL 404 (603)
T ss_pred HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCEEEEEEEEEEEEECCCCHHHHCC--CCCEECCCCEEEEECCCCCHHHHH
T ss_conf 777888877853127885434788268885112488876666537887241236--665115873599870688538999
Q ss_pred HHHHHCCHHCCCCCCCCCCEEECCCCCCCCCEEEEEEECCHHC
Q ss_conf 9998552000234546872110001245683589995081000
Q gi|254780809|r 236 FNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278 (440)
Q Consensus 236 ~N~L~~~~~aIVs~~~GTTRD~i~~~~~i~g~~~~l~DTaGir 278 (440)
.|-|-.-- -+ =++.+-++|+++.=+--+-+|
T Consensus 405 v~LlPRFy----~p--------~~G~IllDG~~l~d~~L~~LR 435 (603)
T TIGR02203 405 VNLLPRFY----EP--------DSGQILLDGVDLQDYTLADLR 435 (603)
T ss_pred HHHCCCCC----CC--------CCCCEEECCCHHHHCCHHHHH
T ss_conf 85523660----45--------888565278404430266356
No 417
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=95.55 E-value=0.007 Score=39.77 Aligned_cols=50 Identities=28% Similarity=0.360 Sum_probs=37.2
Q ss_pred HHHCCCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCCEEECCCCCCCCCEEEEEEECCHH
Q ss_conf 32023024311466318889999855200023454687211000124568358999508100
Q gi|254780809|r 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGI 277 (440)
Q Consensus 216 l~~g~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTTRD~i~~~~~i~g~~~~l~DTaGi 277 (440)
+..|=+|+|+|+.-+|||||++.|+|.-.. -++.+.++|.++.-++..-+
T Consensus 31 i~~Ge~v~ivG~sGsGKSTLl~ll~g~~~p------------~~G~I~idg~di~~~~~~~~ 80 (207)
T cd03369 31 VKAGEKIGIVGRTGAGKSTLILALFRFLEA------------EEGKIEIDGIDISTIPLEDL 80 (207)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHHHHCCC------------CCCEEEECCEECCCCCHHHH
T ss_conf 869999999999998799999999987288------------88789999999540799999
No 418
>pfam00503 G-alpha G-protein alpha subunit. G proteins couple receptors of extracellular signals to intracellular signaling pathways. The G protein alpha subunit binds guanyl nucleotide and is a weak GTPase.
Probab=95.53 E-value=0.054 Score=33.62 Aligned_cols=129 Identities=15% Similarity=0.209 Sum_probs=75.9
Q ss_pred CEEECCCCCCCCCEEEEEEECCHHCCCCHHHHHHHHHHHHHHHHHHCCEEECCCCCCHHH--------------H-----
Q ss_conf 211000124568358999508100024103566667888998503011020135898566--------------3-----
Q gi|254780809|r 254 TRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE--------------I----- 314 (440)
Q Consensus 254 TRD~i~~~~~i~g~~~~l~DTaGir~t~d~IE~~GI~ra~~~i~~aDlil~v~D~~~~~~--------------~----- 314 (440)
|.-+.|..+.+++.+++++|..|-|... +|=...-++.+.||||+..++-++ +
T Consensus 177 TtGI~e~~F~~~~~~~~l~DVGGqr~eR--------rKWi~~Fe~V~aIiFvvsLS~yDq~l~ED~~~NRl~eSl~LF~~ 248 (350)
T pfam00503 177 TTGIVETTFSVKKVTFRMFDVGGQRSER--------KKWIHCFEDVTAIIFLVALSEYDQVLFEDESTNRMQESLKLFDS 248 (350)
T ss_pred CCCCEEEEEEECCEEEEEECCCCCCCCC--------CCHHHHHCCCCEEEEEECCCCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 5784268987478679972488883335--------55566616764699984353013243358644089999999999
Q ss_pred ----HHHCCCCCCCCCCCCCCCCCCCHHHHH--HHHHHHH--HHHHHHHHHHHHHHHHHCCCCC-CC---EEHHHHHHHH
Q ss_conf ----431289853222233344654200000--1333323--2358999999999632203588-63---2014899999
Q gi|254780809|r 315 ----SFPKNIDFIFIGTKSDLYSTYTEEYDH--LISSFTG--EGLEELINKIKSILSNKFKKLP-FS---IPSHKRHLYH 382 (440)
Q Consensus 315 ----~~~~~~~~i~V~NK~Dl~~~~~~~~~~--~ISaktg--~Gi~~L~~~I~~~l~~~~~~~~-~~---i~~~~Rq~~~ 382 (440)
....+.++|+++||.|+.........+ +..--+| ...+.-.+.|.+.+........ -. ..+++--...
T Consensus 249 i~n~~~f~~t~iiLfLNK~Dlf~eKl~~~~l~~~Fpdy~g~~~~~~~~~~fi~~kF~~~~~~~~~r~iy~h~T~AtDt~~ 328 (350)
T pfam00503 249 ICNNRWFKNTSIILFLNKKDLFEEKIKKSPISDYFPEYKGPPQDYEAAKEFIKKKFVSLNRNNPKKEIYSHFTCATDTEN 328 (350)
T ss_pred HHCCHHHCCCCEEEEEECHHHHHHHCCCCCHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEECCCCCHHH
T ss_conf 96485245798799976778899864899434108999999889999999999999975679889826652153205088
Q ss_pred HHHHHHHH
Q ss_conf 99999999
Q gi|254780809|r 383 LSQTVRYL 390 (440)
Q Consensus 383 L~~a~~~L 390 (440)
++.+...+
T Consensus 329 i~~vf~~v 336 (350)
T pfam00503 329 IRFVFDAV 336 (350)
T ss_pred HHHHHHHH
T ss_conf 99999999
No 419
>PRK12486 dmdA putative dimethyl sulfoniopropionate demethylase; Reviewed
Probab=95.52 E-value=0.053 Score=33.70 Aligned_cols=54 Identities=9% Similarity=0.229 Sum_probs=45.4
Q ss_pred CCCEEEEECCCHHHHHHHHHHHCCCC--CCCCEEEEEEEECCCCCEEEEEEEEEEC
Q ss_conf 76169997273889999998716688--8875389988754898672069999956
Q gi|254780809|r 17 PSAISIIRLSGPSCFQVCEFICKKKK--PFPRKASLRYFFGLDGRILDKGLLIVFP 70 (440)
Q Consensus 17 ~~aiaviRiSG~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~iD~~l~~~f~ 70 (440)
.|..+-+||+||++.+.++.++.... .++.++.|..+.+.+|-++|++++..+.
T Consensus 58 vS~mgk~~v~G~dA~~fL~~l~t~d~~~l~~G~~~Yt~~lne~GgiidD~iv~rl~ 113 (367)
T PRK12486 58 VACERQVEIRGPDAGRLMQLLTPRDLRGMLPGQCYYVPIVDETGGMLNDPVALKLA 113 (367)
T ss_pred CCCCEEEEEECCCHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCCEEEEEEEEEEC
T ss_conf 88718999989899999987512476658889799988898999890004899705
No 420
>PRK13547 hmuV hemin importer ATP-binding subunit; Provisional
Probab=95.51 E-value=0.013 Score=37.98 Aligned_cols=54 Identities=31% Similarity=0.385 Sum_probs=35.9
Q ss_pred HHHCCCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCCEEECCCCCCCCCEEEEEEE
Q ss_conf 3202302431146631888999985520002345468721100012456835899950
Q gi|254780809|r 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISD 273 (440)
Q Consensus 216 l~~g~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTTRD~i~~~~~i~g~~~~l~D 273 (440)
+..|=.++|+|+--+|||||+|.|+|.-.+ +-.|. .-.+++.+.++|.++.-++
T Consensus 24 i~~Ge~~aliG~nGaGKSTLl~~i~G~l~~--~~~~~--g~~~~G~i~~~g~~i~~~~ 77 (273)
T PRK13547 24 IEPGRVTALLGRNGAGKSTLLKVLAGELTG--GGAPR--GVRVTGDVALNGEPLAAID 77 (273)
T ss_pred ECCCCEEEEECCCCCHHHHHHHHHHCCCCC--CCCCC--CCEEEEEEEECCEECCCCC
T ss_conf 989989999999997699999999567887--65667--7524779999999855399
No 421
>PRK12289 ribosome-associated GTPase; Reviewed
Probab=95.47 E-value=0.0053 Score=40.63 Aligned_cols=69 Identities=23% Similarity=0.348 Sum_probs=47.5
Q ss_pred HHHHHCCEEECCCCCCHHH----H------HHHCCCCCCCCCCCCCCCCCCCHH-----------HHHHHHHHHHHHHHH
Q ss_conf 8503011020135898566----3------431289853222233344654200-----------000133332323589
Q gi|254780809|r 295 EVENADLILLLKEINSKKE----I------SFPKNIDFIFIGTKSDLYSTYTEE-----------YDHLISSFTGEGLEE 353 (440)
Q Consensus 295 ~i~~aDlil~v~D~~~~~~----~------~~~~~~~~i~V~NK~Dl~~~~~~~-----------~~~~ISaktg~Gi~~ 353 (440)
.+...|.+++|+-..+|.. + ....+.+.++|+||+||.+..... ..+.+|++++.|++.
T Consensus 85 ~VANvDq~liV~s~~~P~~~~~~LDRfLv~ae~~~i~~vivlnK~DL~~~~e~~~~~~~~~~~GY~~i~iS~~~~~gl~~ 164 (351)
T PRK12289 85 PIANVDQILLVFALAEPPLDPWQLSRFLVKAESTGLEIQLCLNKADLVSPTQQQQWQDRLAQWGYQPLFISVEQGIGLEA 164 (351)
T ss_pred CCCCCCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEEHHHCCCHHHHHHHHHHHHHCCCCEEEEECCCCCCHHH
T ss_conf 75670359999965789988779999999999879978999865774998999999999997798289996789968999
Q ss_pred HHHHHHHHHH
Q ss_conf 9999999963
Q gi|254780809|r 354 LINKIKSILS 363 (440)
Q Consensus 354 L~~~I~~~l~ 363 (440)
|++.+.....
T Consensus 165 L~~~L~~k~t 174 (351)
T PRK12289 165 LLKQLRNKIT 174 (351)
T ss_pred HHHHHCCCEE
T ss_conf 9998759869
No 422
>cd03112 CobW_like The function of this protein family is unkown. The amino acid sequence of YjiA protein in E. coli contains several conserved motifs that characterizes it as a P-loop GTPase. YijA gene is among the genes significantly induced in response to DNA-damage caused by mitomycin. YijA gene is a homologue of the CobW gene which encodes the cobalamin synthesis protein/P47K.
Probab=95.45 E-value=0.028 Score=35.65 Aligned_cols=32 Identities=28% Similarity=0.510 Sum_probs=22.6
Q ss_pred CEEEECCCCCCHHHHHHHHHCC----HHCCCCCCCC
Q ss_conf 0243114663188899998552----0002345468
Q gi|254780809|r 221 KIVILGHSNAGKSSLFNALAKK----DVAIVTDIPG 252 (440)
Q Consensus 221 ~v~i~G~pN~GKSSL~N~L~~~----~~aIVs~~~G 252 (440)
-.++.|.--+||+||+|+|+.. +.|++-+.=|
T Consensus 2 v~iitGFLGaGKTTll~~lL~~~~~~~~avIvNEfG 37 (158)
T cd03112 2 VTVLTGFLGAGKTTLLNHILTEQHGRKIAVIENEFG 37 (158)
T ss_pred EEEEEECCCCCHHHHHHHHHHCCCCCCEEEEEECCC
T ss_conf 089984888999999999984788997799970765
No 423
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.44 E-value=0.044 Score=34.25 Aligned_cols=30 Identities=27% Similarity=0.484 Sum_probs=26.3
Q ss_pred HHHHCCCEEEECCCCCCHHHHHHHHHCCHH
Q ss_conf 432023024311466318889999855200
Q gi|254780809|r 215 IIRNGYKIVILGHSNAGKSSLFNALAKKDV 244 (440)
Q Consensus 215 ~l~~g~~v~i~G~pN~GKSSL~N~L~~~~~ 244 (440)
.+.+|=.|+|+||.-+|||||++.|+|...
T Consensus 21 ~v~~GEiv~ilGpNGaGKSTllk~i~G~l~ 50 (177)
T cd03222 21 VVKEGEVIGIVGPNGTGKTTAVKILAGQLI 50 (177)
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 558998999989999999999999968867
No 424
>cd03291 ABCC_CFTR1 The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2.
Probab=95.40 E-value=0.01 Score=38.57 Aligned_cols=29 Identities=28% Similarity=0.397 Sum_probs=25.2
Q ss_pred HHHHCCCEEEECCCCCCHHHHHHHHHCCH
Q ss_conf 43202302431146631888999985520
Q gi|254780809|r 215 IIRNGYKIVILGHSNAGKSSLFNALAKKD 243 (440)
Q Consensus 215 ~l~~g~~v~i~G~pN~GKSSL~N~L~~~~ 243 (440)
.+..|=+|+|+|++-+|||||++.|+|.-
T Consensus 59 ~I~~Ge~vaIVG~sGSGKSTLl~lL~gl~ 87 (282)
T cd03291 59 KIEKGEMLAITGSTGSGKTSLLMLILGEL 87 (282)
T ss_pred EECCCCEEEEECCCCCHHHHHHHHHHCCC
T ss_conf 98499999999999981999999995787
No 425
>pfam01571 GCV_T Aminomethyltransferase folate-binding domain. This is a family of glycine cleavage T-proteins, part of the glycine cleavage multienzyme complex (GCV) found in bacteria and the mitochondria of eukaryotes. GCV catalyses the catabolism of glycine in eukaryotes. The T-protein is an aminomethyl transferase.
Probab=95.39 E-value=0.13 Score=30.88 Aligned_cols=76 Identities=22% Similarity=0.235 Sum_probs=56.8
Q ss_pred CCCEEEEECCCHHHHHHHHHHHCCCCC--CCCEEEEEEEECCCCCEEEEEEEEEECCCCCCCCCCEEEEEECCCHHHHHH
Q ss_conf 761699972738899999987166888--875389988754898672069999956779988775399980898788999
Q gi|254780809|r 17 PSAISIIRLSGPSCFQVCEFICKKKKP--FPRKASLRYFFGLDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNG 94 (440)
Q Consensus 17 ~~aiaviRiSG~~~~~i~~~~~~~~~~--~~~~~~~~~~~~~~~~~iD~~l~~~f~~P~SyTGEDvvEi~~HG~~~i~~~ 94 (440)
.|.-++|||+||++.+.++.++....+ .|.+..+..+.+.+|.+++++.+.-+ +||-+ -...++...+.
T Consensus 4 ~S~~~~i~v~G~Da~~fL~~l~t~di~~l~~g~~~~~~~ln~~G~i~~d~~v~~~-------~e~~~--~l~~~~~~~~~ 74 (212)
T pfam01571 4 VSHMGKIEVSGPDAAAFLQRLLTNDVSKLKPGQATYTLLLNEKGGIIDDLTVYRL-------GEDEF--LLVVNAANAEK 74 (212)
T ss_pred CCCCEEEEEECCCHHHHHHHHCCCCCCCCCCCCEEEEEEECCCCCEEEEEEEEEC-------CCCCE--EEECCHHHHHH
T ss_conf 7880799998889999997842246454899959873402556787773100231-------57704--78516757999
Q ss_pred HHHHHHH
Q ss_conf 9998754
Q gi|254780809|r 95 ILEELAK 101 (440)
Q Consensus 95 il~~l~~ 101 (440)
+++.|.+
T Consensus 75 ~~~~L~~ 81 (212)
T pfam01571 75 DLAWLRK 81 (212)
T ss_pred HHHHHHH
T ss_conf 9999996
No 426
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.33 E-value=0.0094 Score=38.88 Aligned_cols=45 Identities=27% Similarity=0.377 Sum_probs=34.0
Q ss_pred HHHCCCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCCEEECCCCCCCCCEEEEEE
Q ss_conf 320230243114663188899998552000234546872110001245683589995
Q gi|254780809|r 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKIS 272 (440)
Q Consensus 216 l~~g~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTTRD~i~~~~~i~g~~~~l~ 272 (440)
+..|-.++|+|+.-+|||||++.|+|... +. ++.+.++|.++.-+
T Consensus 25 i~~Ge~i~ivG~sGsGKSTLl~ll~gl~~----p~--------~G~I~i~g~~i~~~ 69 (171)
T cd03228 25 IKPGEKVAIVGPSGSGKSTLLKLLLRLYD----PT--------SGEILIDGVDLRDL 69 (171)
T ss_pred ECCCCEEEEECCCCCHHHHHHHHHHCCCC----CC--------CCEEEECCEECCCC
T ss_conf 85998999999999839999999976775----89--------74899999998859
No 427
>KOG0081 consensus
Probab=95.28 E-value=0.051 Score=33.79 Aligned_cols=131 Identities=24% Similarity=0.287 Sum_probs=74.7
Q ss_pred CCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCC--EEECCCCCCC---------CC--EEEEEEECCHHCCCCHHHHH
Q ss_conf 30243114663188899998552000234546872--1100012456---------83--58999508100024103566
Q gi|254780809|r 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT--RDVLTIDLDL---------EG--YLVKISDTAGIRETDDIVEK 286 (440)
Q Consensus 220 ~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTT--RD~i~~~~~i---------~g--~~~~l~DTaGir~t~d~IE~ 286 (440)
++..-.|-..|||.|++-..+.-+-- ..-=|| -|.-+..+.+ .| +...|.||||- |+
T Consensus 10 ikfLaLGDSGVGKTs~Ly~YTD~~F~---~qFIsTVGIDFreKrvvY~s~gp~g~gr~~rihLQlWDTAGQ-------ER 79 (219)
T KOG0081 10 IKFLALGDSGVGKTSFLYQYTDGKFN---TQFISTVGIDFREKRVVYNSSGPGGGGRGQRIHLQLWDTAGQ-------ER 79 (219)
T ss_pred HHHHHHCCCCCCCEEEEEEECCCCCC---CEEEEEEECCCCCCEEEEECCCCCCCCCCEEEEEEEECCCCH-------HH
T ss_conf 88874046777734789873278533---435777401344004788346899887522898752001047-------88
Q ss_pred HHHHHHH--HHHHHHCCEEECCCCCCHH-------HHH------HHCCCCCCCCCCCCCCCCCCCHH-------------
Q ss_conf 6678889--9850301102013589856-------634------31289853222233344654200-------------
Q gi|254780809|r 287 EGIKRTF--LEVENADLILLLKEINSKK-------EIS------FPKNIDFIFIGTKSDLYSTYTEE------------- 338 (440)
Q Consensus 287 ~GI~ra~--~~i~~aDlil~v~D~~~~~-------~~~------~~~~~~~i~V~NK~Dl~~~~~~~------------- 338 (440)
. |++ .-..+|=-.|+++|.++.. |+. +.++.+++++.||+||.......
T Consensus 80 F---RSLTTAFfRDAMGFlLiFDlT~eqSFLnvrnWlSQL~~hAYcE~PDivlcGNK~DL~~~R~Vs~~qa~~La~kygl 156 (219)
T KOG0081 80 F---RSLTTAFFRDAMGFLLIFDLTSEQSFLNVRNWLSQLQTHAYCENPDIVLCGNKADLEDQRVVSEDQAAALADKYGL 156 (219)
T ss_pred H---HHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCCCHHHHHHHHHHHHHHHHHHHCC
T ss_conf 8---8889999985011158886253377887998999987740137999899867123166655239999999997399
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 0001333323235899999999963
Q gi|254780809|r 339 YDHLISSFTGEGLEELINKIKSILS 363 (440)
Q Consensus 339 ~~~~ISaktg~Gi~~L~~~I~~~l~ 363 (440)
+-+..||-||.++++-.+.+...+.
T Consensus 157 PYfETSA~tg~Nv~kave~LldlvM 181 (219)
T KOG0081 157 PYFETSACTGTNVEKAVELLLDLVM 181 (219)
T ss_pred CEEEECCCCCCCHHHHHHHHHHHHH
T ss_conf 8266024557689999999999999
No 428
>pfam05879 RHD3 Root hair defective 3 GTP-binding protein (RHD3). This family consists of several eukaryotic root hair defective 3 like GTP-binding proteins. It has been speculated that the RHD3 protein is a member of a novel class of GTP-binding proteins that is widespread in eukaryotes and required for regulated cell enlargement. The family also contains the homologous yeast synthetic enhancement of YOP1 (SEY1) protein which is involved in membrane trafficking.
Probab=95.25 E-value=0.048 Score=33.95 Aligned_cols=23 Identities=9% Similarity=0.027 Sum_probs=13.3
Q ss_pred CCCCCCCC---CCEEEEEECCCHHHH
Q ss_conf 67799887---753999808987889
Q gi|254780809|r 70 PSPESFTG---EDSAEFHVHGGIAVV 92 (440)
Q Consensus 70 ~~P~SyTG---EDvvEi~~HG~~~i~ 92 (440)
..|..|-+ +|..++..||=|--+
T Consensus 159 ~KP~~~~~s~i~DfFd~~f~~LpH~~ 184 (741)
T pfam05879 159 SKPAGLENSPLNDFFDVEFVALPHKE 184 (741)
T ss_pred CCCHHHCCCCHHHEEEEEEEECCHHH
T ss_conf 79720169987681667888455164
No 429
>TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein; InterPro: IPR005285 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family includes transporters, whose physiological function is not yet established. These proteins are thought to confer resistance to the chemicals cycloheximide and sulphomethuron methyl, BFA, azole antifungal agents, other antifungal agents: amorolfine and terbinafine. Some of them could serve as an efflux pump of various antibiotics..
Probab=95.24 E-value=0.0046 Score=41.07 Aligned_cols=100 Identities=21% Similarity=0.321 Sum_probs=56.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCH
Q ss_conf 10245665677699888654443113544311233258888640100011212333223455432023024311466318
Q gi|254780809|r 153 ELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGK 232 (440)
Q Consensus 153 ~ls~~i~~lr~~L~~~~a~iEa~IDF~dEedi~~~~~~~~~~~i~~i~~~l~~ll~~~~~~~~l~~g~~v~i~G~pN~GK 232 (440)
.+.+.-....+....=.- .+..+|||+.+|+- ..+++.-++ .++++-..+|+.-. =..+-|--.||.|..-|||
T Consensus 793 ~~~~~~~~~~~~~~~~~~-~G~~~~l~~~~~iF--~WrnL~Y~v-~ik~e~R~iL~~V~--GwvkPG~lTALMG~SGAGK 866 (1466)
T TIGR00956 793 DLTDESEDVNDEVDEEKE-SGSEVGLSKSEDIF--HWRNLTYEV-KIKKEKRVILNNVD--GWVKPGTLTALMGASGAGK 866 (1466)
T ss_pred CCCCCHHHHHHHHHCCCC-CCCCCCCCCCCCEE--EEECCEEEE-EECCCCEEECCCCC--EEEECCEEEECCCCCCCCH
T ss_conf 753344677765410035-76523578876545--751540665-43047405315753--2787785765157887635
Q ss_pred HHHHHHHHCCHHCCCCCCCCCCEEECC-CCCCCCCEE
Q ss_conf 889999855200023454687211000-124568358
Q gi|254780809|r 233 SSLFNALAKKDVAIVTDIPGTTRDVLT-IDLDLEGYL 268 (440)
Q Consensus 233 SSL~N~L~~~~~aIVs~~~GTTRD~i~-~~~~i~g~~ 268 (440)
.||||+|.+| .|--+|+ +....+|.+
T Consensus 867 TTLLn~La~R----------~t~GvIT~G~~lVNG~~ 893 (1466)
T TIGR00956 867 TTLLNVLAER----------VTTGVITDGDRLVNGRP 893 (1466)
T ss_pred HHHHHHHHCC----------CCCCEEECCEEEECCCC
T ss_conf 7888644330----------43217705715508845
No 430
>cd00066 G-alpha G protein alpha subunit. The alpha subunit of G proteins contains the guanine nucleotide binding site. The heterotrimeric GNP-binding proteins are signal transducers that communicate signals from many hormones, neurotransmitters, chemokines, and autocrine and paracrine factors. Extracellular signals are received by receptors, which activate the G proteins, which in turn route the signals to several distinct intracellular signaling pathways. The alpha subunit of G proteins is a weak GTPase. In the resting state, heterotrimeric G proteins are associated at the cytosolic face of the plasma membrane and the alpha subunit binds to GDP. Upon activation by a receptor GDP is replaced with GTP, and the G-alpha/GTP complex dissociates from the beta and gamma subunits. This results in activation of downstream signaling pathways, such as cAMP synthesis by adenylyl cyclase, which is terminated when GTP is hydrolized and the heterotrimers reconstitute.
Probab=95.24 E-value=0.075 Score=32.63 Aligned_cols=108 Identities=16% Similarity=0.294 Sum_probs=67.2
Q ss_pred CCEEECCCCCCCCCEEEEEEECCHHCCCCHHHHHHHHHHHHHHHHHHCCEEECCCCCCHHH--------------H----
Q ss_conf 7211000124568358999508100024103566667888998503011020135898566--------------3----
Q gi|254780809|r 253 TTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE--------------I---- 314 (440)
Q Consensus 253 TTRD~i~~~~~i~g~~~~l~DTaGir~t~d~IE~~GI~ra~~~i~~aDlil~v~D~~~~~~--------------~---- 314 (440)
.|.-+.|..+.+++.+++++|..|-|.. + +|=...-++.+.|+||+..++-+. +
T Consensus 147 ~TtGI~e~~F~~~~~~~~~~DVGGQrse-----R---kKWi~~Fe~V~aiiFvvsLs~yDq~l~Ed~~~Nrl~eSl~LF~ 218 (317)
T cd00066 147 KTTGIVETKFTIKNLKFRMFDVGGQRSE-----R---KKWIHCFEDVTAIIFVVALSEYDQVLFEDESTNRMQESLNLFD 218 (317)
T ss_pred CCCCCEEEEEEECCEEEEEECCCCCCCC-----C---CCHHHHHCCCCEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 6788316999977767998516888443-----4---3468884677669988523532335556645178999999999
Q ss_pred -----HHHCCCCCCCCCCCCCCCCCCCHHHHH--HHHHHHH--HHHHHHHHHHHHHHHHHCCC
Q ss_conf -----431289853222233344654200000--1333323--23589999999996322035
Q gi|254780809|r 315 -----SFPKNIDFIFIGTKSDLYSTYTEEYDH--LISSFTG--EGLEELINKIKSILSNKFKK 368 (440)
Q Consensus 315 -----~~~~~~~~i~V~NK~Dl~~~~~~~~~~--~ISaktg--~Gi~~L~~~I~~~l~~~~~~ 368 (440)
....+.++++++||.|+...+.+...+ +...-+| ...+.-.+.|.+.+......
T Consensus 219 ~i~n~~~f~~~~iiLflNK~Dlf~eKi~~~~l~~~Fpdy~g~~~~~~~a~~fi~~kF~~~~~~ 281 (317)
T cd00066 219 SICNSRWFANTSIILFLNKKDLFEEKIKKSPLTDYFPDYTGPPNDYEEAAKFIRKKFLDLNRN 281 (317)
T ss_pred HHHCCHHHCCCCEEEEEECHHHHHHHCCCCCHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCC
T ss_conf 997487455798899985769999864799544228899999999999999999999985368
No 431
>PRK12288 ribosome-associated GTPase; Reviewed
Probab=95.16 E-value=0.0075 Score=39.58 Aligned_cols=68 Identities=24% Similarity=0.291 Sum_probs=44.5
Q ss_pred HHHHHCCEEECCCCCCHHHH---------HHHCCCCCCCCCCCCCCCCCCCHH--------------HHHHHHHHHHHHH
Q ss_conf 85030110201358985663---------431289853222233344654200--------------0001333323235
Q gi|254780809|r 295 EVENADLILLLKEINSKKEI---------SFPKNIDFIFIGTKSDLYSTYTEE--------------YDHLISSFTGEGL 351 (440)
Q Consensus 295 ~i~~aDlil~v~D~~~~~~~---------~~~~~~~~i~V~NK~Dl~~~~~~~--------------~~~~ISaktg~Gi 351 (440)
.+..-|-++.|+-+...... ....+.+.++|+||+||.+..... ..+.+|+++++|+
T Consensus 119 iAANIDqvlIV~A~~P~~~~~liDRyLv~ae~~~I~pvIvlNK~DL~~~~~~~~~~~~l~~Y~~lGY~v~~~Sa~~~~gl 198 (344)
T PRK12288 119 IAANIDQIVIVSAVLPELSLNIIDRYLVACETLGIEPLIVLNKIDLLDDEERPFVNEQLDIYRNIGYRVLMVSSHTGEGL 198 (344)
T ss_pred EEEECCEEEEEEECCCCCCHHHHHHHHHHHHHCCCCEEEEEECHHCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCH
T ss_conf 79716889999968999897899999999998699779997314408977899999999999867973999736886289
Q ss_pred HHHHHHHHHHH
Q ss_conf 89999999996
Q gi|254780809|r 352 EELINKIKSIL 362 (440)
Q Consensus 352 ~~L~~~I~~~l 362 (440)
+.|.+.+....
T Consensus 199 ~~L~~~L~~kt 209 (344)
T PRK12288 199 EPLEAALTGRI 209 (344)
T ss_pred HHHHHHHCCCE
T ss_conf 99999876785
No 432
>KOG0096 consensus
Probab=95.10 E-value=0.023 Score=36.14 Aligned_cols=136 Identities=19% Similarity=0.234 Sum_probs=84.4
Q ss_pred CCCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCCEEECCCC--CCCCC-EEEEEEECCHHCCCCHHHHHHHHHHHHHH
Q ss_conf 2302431146631888999985520002345468721100012--45683-58999508100024103566667888998
Q gi|254780809|r 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTID--LDLEG-YLVKISDTAGIRETDDIVEKEGIKRTFLE 295 (440)
Q Consensus 219 g~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTTRD~i~~~--~~i~g-~~~~l~DTaGir~t~d~IE~~GI~ra~~~ 295 (440)
+++.+++|.--.||.++.++.+..+=.- .++-|+-=.+... .+..| +.+...||||- |+.|-.|.--.
T Consensus 10 ~fklvlvGdgg~gKtt~vkr~ltgeFe~--~y~at~Gv~~~pl~f~tn~g~irf~~wdtagq-------Ek~gglrdgyy 80 (216)
T KOG0096 10 TFKLVLVGDGGTGKTTFVKRHLTGEFEK--TYPATLGVEVHPLLFDTNRGQIRFNVWDTAGQ-------EKKGGLRDGYY 80 (216)
T ss_pred EEEEEEECCCCCCCCCHHHHHHCCCCEE--CCCCCCEEEEEEEEEECCCCCEEEEEEECCCC-------EEECCCCCCCE
T ss_conf 2899983478644453134353032102--13675103776545504568478886304442-------12323244527
Q ss_pred HHHHCCEEECCCCCCHH-----------HHHHHCCCCCCCCCCCCCCCCCCCHHH-----------HHHHHHHHHHHHHH
Q ss_conf 50301102013589856-----------634312898532222333446542000-----------00133332323589
Q gi|254780809|r 296 VENADLILLLKEINSKK-----------EISFPKNIDFIFIGTKSDLYSTYTEEY-----------DHLISSFTGEGLEE 353 (440)
Q Consensus 296 i~~aDlil~v~D~~~~~-----------~~~~~~~~~~i~V~NK~Dl~~~~~~~~-----------~~~ISaktg~Gi~~ 353 (440)
+.. ..-++++|..+.. -...-.+.|++++.||.|......... -+.+||+++-+.+.
T Consensus 81 I~~-qcAiimFdVtsr~t~~n~~rwhrd~~rv~~NiPiv~cGNKvDi~~r~~k~k~v~~~~kknl~y~~~Saksn~Nfek 159 (216)
T KOG0096 81 IQG-QCAIIMFDVTSRFTYKNVPRWHRDLVRVRENIPIVLCGNKVDIKARKVKAKPVSFHRKKNLQYYEISAKSNYNFER 159 (216)
T ss_pred EEC-CEEEEEEEEEHHHHHHCCHHHHHHHHHHHCCCCEEEECCCEECCCCCCCCCCCEEEECCCCEEEEEECCCCCCCCC
T ss_conf 702-1468886100145562221789999998627870454450121551013543014521551457740102556454
Q ss_pred HHHHHHHHHHH
Q ss_conf 99999999632
Q gi|254780809|r 354 LINKIKSILSN 364 (440)
Q Consensus 354 L~~~I~~~l~~ 364 (440)
=.-.+..++..
T Consensus 160 PF~~LarKl~G 170 (216)
T KOG0096 160 PFLWLARKLTG 170 (216)
T ss_pred CHHHHHHHHCC
T ss_conf 06777655059
No 433
>PRK12486 dmdA putative dimethyl sulfoniopropionate demethylase; Reviewed
Probab=95.09 E-value=0.079 Score=32.47 Aligned_cols=78 Identities=15% Similarity=0.220 Sum_probs=46.8
Q ss_pred CCEEEEECCCHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCEEEEEEEEEECCCCCCCCCCEEEEEECCCHHHHHHHHH
Q ss_conf 61699972738899999987166888875389988754898672069999956779988775399980898788999999
Q gi|254780809|r 18 SAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILE 97 (440)
Q Consensus 18 ~aiaviRiSG~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~iD~~l~~~f~~P~SyTGEDvvEi~~HG~~~i~~~il~ 97 (440)
.-.+.+-|.||+|.+++++++......-+...+..+ ...|. +++ . +--||||||=.||+|++.. ....+.+
T Consensus 146 ~~~~~lalqGP~a~~vl~~~~~~~~~~l~~~~~~~~-~~~g~---~~~--i--~RtgyTGE~G~EI~v~~~~-~a~~lw~ 216 (367)
T PRK12486 146 PDVSPLAVQGPKADDLMARVFGESIRDIRFFRFGYF-DFEGH---DLV--V--ARSGYSKQGGFEIYVEGSD-LGMPLWN 216 (367)
T ss_pred CCEEEEEEECCCHHHHHHHHCCCCHHHCCCCCCCEE-EECCE---EEE--E--EEECCCCCCEEEEEECCHH-HHHHHHH
T ss_conf 887889855708499997634787455644546579-99991---799--9--9522367887999953589-9999999
Q ss_pred HHHHHHHH
Q ss_conf 87544320
Q gi|254780809|r 98 ELAKMPNL 105 (440)
Q Consensus 98 ~l~~~~g~ 105 (440)
.|... |.
T Consensus 217 ~L~~a-G~ 223 (367)
T PRK12486 217 ALFEA-GA 223 (367)
T ss_pred HHHHH-CC
T ss_conf 99985-88
No 434
>pfam05621 TniB Bacterial TniB protein. This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein which is involved in Tn5053 mercury resistance transposition.
Probab=95.07 E-value=0.067 Score=32.98 Aligned_cols=95 Identities=15% Similarity=0.182 Sum_probs=57.5
Q ss_pred HHCCCHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCCEEECCCCCCCCCEEEEEEEC
Q ss_conf 40100011212333223455432023024311466318889999855200023454687211000124568358999508
Q gi|254780809|r 195 DILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDT 274 (440)
Q Consensus 195 ~i~~i~~~l~~ll~~~~~~~~l~~g~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTTRD~i~~~~~i~g~~~~l~DT 274 (440)
+-..+...++.++..-++.+ -..+.|+|.+|-|||+++++.....-.. .+ +.. ..+||..+.+
T Consensus 41 ~A~~~L~~Le~Ll~~P~~~R----mp~lLlvGdsnnGKT~Iv~rF~~~hp~~-~d-~~~-----------~~~PVl~vq~ 103 (302)
T pfam05621 41 RAVEALNRLEALYAWPNKQR----MPNLLLVGPTNNGKSMIVEKFRRAHPAG-SD-ADQ-----------EHIPVLVVQM 103 (302)
T ss_pred HHHHHHHHHHHHHHCCCCCC----CCCEEEEECCCCCHHHHHHHHHHHCCCC-CC-CCC-----------CCCEEEEEEC
T ss_conf 99999999999984686468----8755887079887899999999967998-78-666-----------7021899976
Q ss_pred CH------------------HCCCCHHHHHHHHHHHHHHHHHHCCEEECCCC
Q ss_conf 10------------------00241035666678889985030110201358
Q gi|254780809|r 275 AG------------------IRETDDIVEKEGIKRTFLEVENADLILLLKEI 308 (440)
Q Consensus 275 aG------------------ir~t~d~IE~~GI~ra~~~i~~aDlil~v~D~ 308 (440)
|- +|.+...-++. .++...++...+-++++|-
T Consensus 104 P~~p~~~~lY~~IL~~l~aP~~~~~~~~~~~--~~~~~ll~~~~vrmLIIDE 153 (302)
T pfam05621 104 PSEPSVIRFYVALLAAMGAPLRPRPRLPEME--QLALALLRKVGVRMLVIDE 153 (302)
T ss_pred CCCCCHHHHHHHHHHHHCCCCCCCCCHHHHH--HHHHHHHHHCCCCEEEEEC
T ss_conf 9998868999999998378778887789999--9999999974987899854
No 435
>cd03290 ABCC_SUR1_N The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity.
Probab=95.07 E-value=0.015 Score=37.47 Aligned_cols=29 Identities=34% Similarity=0.434 Sum_probs=25.2
Q ss_pred HHHCCCEEEECCCCCCHHHHHHHHHCCHH
Q ss_conf 32023024311466318889999855200
Q gi|254780809|r 216 IRNGYKIVILGHSNAGKSSLFNALAKKDV 244 (440)
Q Consensus 216 l~~g~~v~i~G~pN~GKSSL~N~L~~~~~ 244 (440)
+..|=.++|+|+.-+|||||+++|+|.-.
T Consensus 24 i~~Ge~~~IvG~sGsGKSTLl~~l~g~~~ 52 (218)
T cd03290 24 IPTGQLTMIVGQVGCGKSSLLLAILGEMQ 52 (218)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 86999999999999809999999855565
No 436
>pfam02263 GBP Guanylate-binding protein, N-terminal domain. Transcription of the anti-viral guanylate-binding protein (GBP) is induced by interferon-gamma during macrophage induction. This family contains GBP1 and GPB2, both GTPases capable of binding GTP, GDP and GMP.
Probab=95.05 E-value=0.037 Score=34.77 Aligned_cols=58 Identities=24% Similarity=0.290 Sum_probs=37.3
Q ss_pred CCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCC----CCEEECC-C--CCCCCCEEEEEEECCHHCC
Q ss_conf 302431146631888999985520002345468----7211000-1--2456835899950810002
Q gi|254780809|r 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPG----TTRDVLT-I--DLDLEGYLVKISDTAGIRE 279 (440)
Q Consensus 220 ~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~G----TTRD~i~-~--~~~i~g~~~~l~DTaGir~ 279 (440)
.-|+|+|+--.|||-|+|.|+++... -..-+ +|+.+-- . .-.=.++.+.|+||-|+-+
T Consensus 22 ~vvsv~G~~RtGKSfLlN~l~~~~~g--F~~g~~~~~~T~GIwmw~~p~~~~~~~~v~llDTeG~~d 86 (264)
T pfam02263 22 VVVAIVGLYRTGKSYLMNFLAGKLTG--FSLGSTVESETKGIWMWCVPHPNKPKHTLVLLDTEGLGD 86 (264)
T ss_pred EEEEEECCCCCCHHHHHHHHHCCCCC--CCCCCCCCCCCCEEEEEECCCCCCCCEEEEEEECCCCCC
T ss_conf 99997778868748999998375779--874777576665058860445788861799981466565
No 437
>TIGR01192 chvA glucan exporter ATP-binding protein; InterPro: IPR005896 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family contains glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. In general, this protein is in some ways implicated in osmo-regulation and is suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bacterial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmo-adaptaion are related. ; GO: 0005215 transporter activity, 0006810 transport.
Probab=95.03 E-value=0.014 Score=37.63 Aligned_cols=120 Identities=18% Similarity=0.256 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHH---
Q ss_conf 89885003688999887531431024566567769988865444311354431123325888864010001121233---
Q gi|254780809|r 131 LADLISSETEMQRRLSMEGMSGELSSLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHI--- 207 (440)
Q Consensus 131 i~~LI~A~t~~~~~~a~~~l~G~ls~~i~~lr~~L~~~~a~iEa~IDF~dEedi~~~~~~~~~~~i~~i~~~l~~ll--- 207 (440)
|.+.|.---..++ |=|.| ..++..-..+.+.+|.+|-.-+.-| -+.+-+...-..++..+.-.++=.-
T Consensus 272 VGeViaFiGFa~L------lIGRL-DQ~~~F~~~~~~a~AKL~~FF~lED--s~~~~~EPa~~~~L~nV~G~v~F~~i~f 342 (592)
T TIGR01192 272 VGEVIAFIGFANL------LIGRL-DQMKGFITQIFEARAKLEDFFDLED--SVKEREEPADAPELKNVKGAVEFRDITF 342 (592)
T ss_pred CCCEEEHHHHHHH------HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH--HHCCCCCCCCCCCCCCCEEEEEEEEEEE
T ss_conf 3622422316768------86379-9999999999987765777753322--2103568777544688626788875310
Q ss_pred --HHHHHHH-----HHHHCCCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCCEEECCCCCCCCCEEEEE
Q ss_conf --3223455-----432023024311466318889999855200023454687211000124568358999
Q gi|254780809|r 208 --SQGKLGE-----IIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKI 271 (440)
Q Consensus 208 --~~~~~~~-----~l~~g~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTTRD~i~~~~~i~g~~~~l 271 (440)
.++.+|- ..+-|-+|+|+||+-|||.||+|-|=.- - |+-.+.+.|+|+.+.=
T Consensus 343 ~FaNs~QGV~dvSF~~KAG~TvAIVGPTGAGKTTLiNLLQRV-----y-------dP~~G~I~IDG~~I~~ 401 (592)
T TIGR01192 343 EFANSSQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRV-----Y-------DPKVGQILIDGIDINT 401 (592)
T ss_pred CCCCCCCCCEEEEEEEECCCEEEEECCCCCCHHHHHHHHHHH-----C-------CCCCCEEEECCEEHHH
T ss_conf 478766883000366524756898778997178998877531-----0-------6986548872424001
No 438
>KOG1673 consensus
Probab=95.01 E-value=0.015 Score=37.56 Aligned_cols=109 Identities=23% Similarity=0.411 Sum_probs=71.3
Q ss_pred CCCEEEECCCCCCHHHHHHHHHCCHHC-CCCCCCCCCEEECCCCCCCCCE--EEEEEECCHHCCCCHHHHHHHHHHHHHH
Q ss_conf 230243114663188899998552000-2345468721100012456835--8999508100024103566667888998
Q gi|254780809|r 219 GYKIVILGHSNAGKSSLFNALAKKDVA-IVTDIPGTTRDVLTIDLDLEGY--LVKISDTAGIRETDDIVEKEGIKRTFLE 295 (440)
Q Consensus 219 g~~v~i~G~pN~GKSSL~N~L~~~~~a-IVs~~~GTTRD~i~~~~~i~g~--~~~l~DTaGir~t~d~IE~~GI~ra~~~ 295 (440)
.++|.++|-|-+||.||+-..+|.+-- --+..-|. ...+..+.+.|. .+.+.|..|-|+..|.+- -+
T Consensus 20 slkv~llGD~qiGKTs~mvkYV~~~~de~~~q~~Gv--N~mdkt~~i~~t~IsfSIwdlgG~~~~~n~lP--------ia 89 (205)
T KOG1673 20 SLKVGLLGDAQIGKTSLMVKYVQNEYDEEYTQTLGV--NFMDKTVSIRGTDISFSIWDLGGQREFINMLP--------IA 89 (205)
T ss_pred EEEEEEECCCCCCCEEEEHHHHCCHHHHHHHHHHCC--CCEEEEEEECCEEEEEEEEECCCCHHHHCCCC--------EE
T ss_conf 899985136545835430445413127888887474--00210788624089999874377475540476--------54
Q ss_pred HHHHCCEEECCCCCCHHHHHH-------HCC-----CCCCCCCCCCCCCCCCCHH
Q ss_conf 503011020135898566343-------128-----9853222233344654200
Q gi|254780809|r 296 VENADLILLLKEINSKKEISF-------PKN-----IDFIFIGTKSDLYSTYTEE 338 (440)
Q Consensus 296 i~~aDlil~v~D~~~~~~~~~-------~~~-----~~~i~V~NK~Dl~~~~~~~ 338 (440)
-++|-.+||++|.+.+..+.. ..+ .| |+|.+|-|+.-..+.+
T Consensus 90 c~dsvaIlFmFDLt~r~TLnSi~~WY~QAr~~NktAiP-ilvGTKyD~fi~lp~e 143 (205)
T KOG1673 90 CKDSVAILFMFDLTRRSTLNSIKEWYRQARGLNKTAIP-ILVGTKYDLFIDLPPE 143 (205)
T ss_pred ECCCEEEEEEEECCCHHHHHHHHHHHHHHHCCCCCCCE-EEECCCHHHHHCCCHH
T ss_conf 44737999998447667788899999987425775313-8852435766248988
No 439
>PRK00389 gcvT glycine cleavage system aminomethyltransferase T; Reviewed
Probab=95.01 E-value=0.1 Score=31.72 Aligned_cols=81 Identities=12% Similarity=0.182 Sum_probs=54.4
Q ss_pred CCEEEEECCCHHHHHHHHHHHCCCCCCCCEEEEEEEECCCCCEEEEEEEEEECCCCCCCCCCEEEEEECCCHHHHHHHHH
Q ss_conf 61699972738899999987166888875389988754898672069999956779988775399980898788999999
Q gi|254780809|r 18 SAISIIRLSGPSCFQVCEFICKKKKPFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGILE 97 (440)
Q Consensus 18 ~aiaviRiSG~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~iD~~l~~~f~~P~SyTGEDvvEi~~HG~~~i~~~il~ 97 (440)
...+++-|.||.|.+++++++......-....+..+. ..|. .| ... --|||||+-.||+|. +--...+.+
T Consensus 140 ~~~a~l~vqGPkS~~vL~~l~~~~~~~l~~~~~~~~~-i~g~---~~--~i~--R~g~tGE~G~Ei~~~--~~~~~~lw~ 209 (362)
T PRK00389 140 DDLALLAVQGPKAREKLQKLTPADLSELKPFEFAQAG-FAGV---DV--FVA--RTGYTGEDGFEIYLP--AEDAEALWD 209 (362)
T ss_pred CCEEEEEEECHHHHHHHHHHCCCCHHHCCCCCEEEEE-ECCC---EE--EEE--ECCCCCCCEEEEEEC--HHHHHHHHH
T ss_conf 6465643018479999998677386568744206998-6797---69--999--457578976999966--999999999
Q ss_pred HHHHHHHHHHCC
Q ss_conf 875443200000
Q gi|254780809|r 98 ELAKMPNLRLAN 109 (440)
Q Consensus 98 ~l~~~~g~r~A~ 109 (440)
.|.+. |++++-
T Consensus 210 ~l~~~-Gi~p~G 220 (362)
T PRK00389 210 ALLEA-GVKPCG 220 (362)
T ss_pred HHHHC-CCEECC
T ss_conf 99985-991026
No 440
>KOG2743 consensus
Probab=95.01 E-value=0.065 Score=33.05 Aligned_cols=23 Identities=30% Similarity=0.385 Sum_probs=19.1
Q ss_pred CCEEEECCCCCCHHHHHHHHHCC
Q ss_conf 30243114663188899998552
Q gi|254780809|r 220 YKIVILGHSNAGKSSLFNALAKK 242 (440)
Q Consensus 220 ~~v~i~G~pN~GKSSL~N~L~~~ 242 (440)
+...|.|+-.+|||||+|+++..
T Consensus 58 PvtIITGyLGaGKtTLLn~Il~~ 80 (391)
T KOG2743 58 PVTIITGYLGAGKTTLLNYILTG 80 (391)
T ss_pred CEEEEEECCCCCHHHHHHHHHCC
T ss_conf 43999731467868999999716
No 441
>KOG1249 consensus
Probab=95.01 E-value=0.0089 Score=39.05 Aligned_cols=62 Identities=26% Similarity=0.303 Sum_probs=43.4
Q ss_pred HCCCEEEECCCCCCHHHHHHHHHCCHH-----CCCCCCCCCCEEECCCCCCCCCEEEEEEECCHHCCC
Q ss_conf 023024311466318889999855200-----023454687211000124568358999508100024
Q gi|254780809|r 218 NGYKIVILGHSNAGKSSLFNALAKKDV-----AIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRET 280 (440)
Q Consensus 218 ~g~~v~i~G~pN~GKSSL~N~L~~~~~-----aIVs~~~GTTRD~i~~~~~i~g~~~~l~DTaGir~t 280 (440)
.+..|+.+|++|+||++++|++..+.- -+-++.||||-..+...=.+. ..-.++||||+...
T Consensus 308 ~~~~v~~vg~t~a~~e~~~~~~~~~~~a~~~~~~e~~vPgtTLg~~ri~~i~~-~~~w~YDTPG~~~~ 374 (572)
T KOG1249 308 KAGPVAAVGRTFAGSEELINAMAKELHADVEALAEEPVPGTTLGIRRIEGIFK-RGAWLYDTPGVLNP 374 (572)
T ss_pred CCCCHHHHHHHHHCCCHHHHHHHHHHCCCHHCCCCCCCCCCCCCCEEEECCCC-CCCEEECCCCCCCH
T ss_conf 55330775533303321221144552431001013898865113124311004-65255158875675
No 442
>TIGR02868 CydC ABC transporter, CydDC cysteine exporter (CydDC-E) family, permease/ATP-binding protein CydC; InterPro: IPR014223 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This entry represents CydC, a member of a heterodimeric ATP-binding cassette-type transporter (ABC transporter). It is involved in the export of glutathione from the cytoplasm to the periplasm and is required for the assembly of both cytochrome c and cytochrome bd , , .; GO: 0042626 ATPase activity coupled to transmembrane movement of substances, 0006810 transport, 0016021 integral to membrane.
Probab=95.00 E-value=0.015 Score=37.58 Aligned_cols=135 Identities=19% Similarity=0.293 Sum_probs=84.1
Q ss_pred HHHHCCCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCCEEECCCCCCCCCEEEEEEECCHHCCCCHHHHHHHHHHHHH
Q ss_conf 43202302431146631888999985520002345468721100012456835899950810002410356666788899
Q gi|254780809|r 215 IIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFL 294 (440)
Q Consensus 215 ~l~~g~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTTRD~i~~~~~i~g~~~~l~DTaGir~t~d~IE~~GI~ra~~ 294 (440)
.+..|-||+|+|+.-+|||||+..|.|- .|.-++++.++|+++.=+|--=+|. ...
T Consensus 383 ~l~~G~r~Ai~G~SG~GKsTLL~~L~G~------------l~P~~G~vtl~G~~~~~~~~~evrr------------~v~ 438 (566)
T TIGR02868 383 DLPPGERVAILGPSGSGKSTLLATLAGL------------LDPLQGEVTLDGVPVSSLSEDEVRR------------RVS 438 (566)
T ss_pred CCCCCCCEEEECCCCCCHHHHHHHHHHH------------CCCCCCCEEECCCCHHHCCCCHHEH------------HEE
T ss_conf 1138860898668876578999999840------------2899991787773243257311000------------003
Q ss_pred H-HHHHCCEEECCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCE
Q ss_conf 8-503011020135898566343128985322223334465420000013333232358999999999632203588632
Q gi|254780809|r 295 E-VENADLILLLKEINSKKEISFPKNIDFIFIGTKSDLYSTYTEEYDHLISSFTGEGLEELINKIKSILSNKFKKLPFSI 373 (440)
Q Consensus 295 ~-i~~aDlil~v~D~~~~~~~~~~~~~~~i~V~NK~Dl~~~~~~~~~~~ISaktg~Gi~~L~~~I~~~l~~~~~~~~~~i 373 (440)
. .+++ +|||.+=.+++-+ -+-|-... +..+-..-+...-|+.++++.+-+=++.........+
T Consensus 439 ~~aQ~a----HlF~ttvr~NLrl----------arpdaaaG--DtdeE~~~aL~~vgL~~~~~~LP~Gl~T~~ge~G~~l 502 (566)
T TIGR02868 439 VFAQDA----HLFDTTVRENLRL----------ARPDAAAG--DTDEELLAALERVGLADWLRALPDGLDTVLGEGGARL 502 (566)
T ss_pred ECCCCC----CCCCCCHHHHHHH----------CCCCCCCC--CCHHHHHHHHHHHCCCCHHHHCCCCCCCCCCCCCCCC
T ss_conf 127886----2110547878873----------18888998--8889999999971580238638576785303564301
Q ss_pred EHHHHHHHHHHHHHHH
Q ss_conf 0148999999999999
Q gi|254780809|r 374 PSHKRHLYHLSQTVRY 389 (440)
Q Consensus 374 ~~~~Rq~~~L~~a~~~ 389 (440)
.--+||+-+|-+++-+
T Consensus 503 SGGeRqRLALARaLl~ 518 (566)
T TIGR02868 503 SGGERQRLALARALLA 518 (566)
T ss_pred CHHHHHHHHHHHHHHC
T ss_conf 0489999999999737
No 443
>cd03110 Fer4_NifH_child This protein family's function is unkown. It contains nucleotide binding site. It uses NTP as energy source to transfer electron or ion.
Probab=94.97 E-value=0.072 Score=32.75 Aligned_cols=61 Identities=25% Similarity=0.190 Sum_probs=39.9
Q ss_pred CCCCEEEEEEEC-CHHCCCCHHHHHHHHHHHHHHHHHHCCEEECCCCCCHHH------HH--HHCCCCCCCCCCCCCCCC
Q ss_conf 568358999508-100024103566667888998503011020135898566------34--312898532222333446
Q gi|254780809|r 263 DLEGYLVKISDT-AGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE------IS--FPKNIDFIFIGTKSDLYS 333 (440)
Q Consensus 263 ~i~g~~~~l~DT-aGir~t~d~IE~~GI~ra~~~i~~aDlil~v~D~~~~~~------~~--~~~~~~~i~V~NK~Dl~~ 333 (440)
.++++.+.++|| ||+.. -+...+..||.++.|..++.... .. ...++|+-+|.||.|...
T Consensus 89 ~~~~~D~viiD~Ppg~~~-----------~~~~al~~ad~~iiVttP~~~si~d~~r~i~l~~~~~~~~gvV~Nr~~~~~ 157 (179)
T cd03110 89 KAEGAELIIIDGPPGIGC-----------PVIASLTGADAALLVTEPTPSGLHDLERAVELVRHFGIPVGVVINKYDLND 157 (179)
T ss_pred HCCCCCEEEEECCCCCCH-----------HHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCC
T ss_conf 443799899818999757-----------899999739949998199478999999999999982997899996887887
Q ss_pred C
Q ss_conf 5
Q gi|254780809|r 334 T 334 (440)
Q Consensus 334 ~ 334 (440)
.
T Consensus 158 ~ 158 (179)
T cd03110 158 E 158 (179)
T ss_pred C
T ss_conf 6
No 444
>PTZ00265 multidrug resistance protein (mdr1); Provisional
Probab=94.95 E-value=0.039 Score=34.61 Aligned_cols=26 Identities=27% Similarity=0.446 Sum_probs=22.7
Q ss_pred HHCCCEEEECCCCCCHHHHHHHHHCC
Q ss_conf 20230243114663188899998552
Q gi|254780809|r 217 RNGYKIVILGHSNAGKSSLFNALAKK 242 (440)
Q Consensus 217 ~~g~~v~i~G~pN~GKSSL~N~L~~~ 242 (440)
..|=+|+|+|++-+||||+++.|..-
T Consensus 1193 ~~GqkVaiVGrSGsGKSTii~lL~Rf 1218 (1467)
T PTZ00265 1193 DSKKTTAIVGETGSGKSTFMNLLLRF 1218 (1467)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 79988999899998399999999977
No 445
>smart00275 G_alpha G protein alpha subunit. Subunit of G proteins that contains the guanine nucleotide binding site
Probab=94.94 E-value=0.036 Score=34.87 Aligned_cols=107 Identities=15% Similarity=0.240 Sum_probs=68.1
Q ss_pred CCEEECCCCCCCCCEEEEEEECCHHCCCCHHHHHHHHHHHHHHHHHHCCEEECCCCCCHHH--------------H----
Q ss_conf 7211000124568358999508100024103566667888998503011020135898566--------------3----
Q gi|254780809|r 253 TTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKE--------------I---- 314 (440)
Q Consensus 253 TTRD~i~~~~~i~g~~~~l~DTaGir~t~d~IE~~GI~ra~~~i~~aDlil~v~D~~~~~~--------------~---- 314 (440)
+|.-+.|..+.+++.+++++|..|-|.. + +|=...-++.+.|+||+..++-++ +
T Consensus 170 ~TtGI~e~~f~~~~~~~~~~DVGGQRse-----R---rKWi~~Fd~V~aiiFv~slS~yDq~l~Ed~~~Nrm~eSl~LF~ 241 (342)
T smart00275 170 PTTGIQETAFIVKKLFFRMFDVGGQRSE-----R---KKWIHCFDNVTAIIFCVALSEYDQVLEEDESTNRMQESLNLFE 241 (342)
T ss_pred CCCCCEEEEEEECCEEEEEECCCCCCCH-----H---HHHHHHHCCCCEEEEEEEHHHHCCCCCCCCCCCHHHHHHHHHH
T ss_conf 5578416888768846999607987402-----3---3377761677689999512231545657776608999999999
Q ss_pred -----HHHCCCCCCCCCCCCCCCCCCCHHHHH--HHHHHHH-HHHHHHHHHHHHHHHHHCC
Q ss_conf -----431289853222233344654200000--1333323-2358999999999632203
Q gi|254780809|r 315 -----SFPKNIDFIFIGTKSDLYSTYTEEYDH--LISSFTG-EGLEELINKIKSILSNKFK 367 (440)
Q Consensus 315 -----~~~~~~~~i~V~NK~Dl~~~~~~~~~~--~ISaktg-~Gi~~L~~~I~~~l~~~~~ 367 (440)
....+.++|+++||.|+.....+...+ +.+--+| ...+...+.|.+.+.....
T Consensus 242 ~I~n~~~f~~t~iiLfLNK~Dlf~eKi~~~~l~~~fp~y~g~~~~~~~~~fi~~~F~~~~~ 302 (342)
T smart00275 242 SICNSRWFANTSIILFLNKIDLFEEKIKKVPLVDYFPDYKGPNDYEAAAKFIKQKFLRLNR 302 (342)
T ss_pred HHHCCHHHCCCCEEEEEECHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCC
T ss_conf 9964863457887999755899998727996011599999998889999999999998577
No 446
>PRK00098 ribosome-associated GTPase; Reviewed
Probab=94.93 E-value=0.012 Score=38.18 Aligned_cols=70 Identities=21% Similarity=0.199 Sum_probs=46.4
Q ss_pred HHHHHHHCCEEECCCCCCHHH----H------HHHCCCCCCCCCCCCCCCCCCCHH------------HHHHHHHHHHHH
Q ss_conf 998503011020135898566----3------431289853222233344654200------------000133332323
Q gi|254780809|r 293 FLEVENADLILLLKEINSKKE----I------SFPKNIDFIFIGTKSDLYSTYTEE------------YDHLISSFTGEG 350 (440)
Q Consensus 293 ~~~i~~aDlil~v~D~~~~~~----~------~~~~~~~~i~V~NK~Dl~~~~~~~------------~~~~ISaktg~G 350 (440)
.-.+...|.++.|+-+.+|.. + ....+.+.++|+||+||.+..... ..+.+|+++++|
T Consensus 75 q~iAANiD~~~iV~s~~~P~~~~~~idR~Lv~a~~~~i~pvivlnK~DL~~~~~~~~~~~~~y~~~gy~v~~~S~~~~~g 154 (298)
T PRK00098 75 KLIAANVDQAVIVFAAKEPDFSTDLLDRFLVLAEANDIKPIIVLNKIDLVDDLEEARERLALYRAIGYDVLELSAKEGPG 154 (298)
T ss_pred CEEEEECCEEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEECCCCCC
T ss_conf 32787447899998568898998999999999998699589996424564779999999999987899789996899989
Q ss_pred HHHHHHHHHHHH
Q ss_conf 589999999996
Q gi|254780809|r 351 LEELINKIKSIL 362 (440)
Q Consensus 351 i~~L~~~I~~~l 362 (440)
++.|.+.+....
T Consensus 155 ~~~L~~~l~~k~ 166 (298)
T PRK00098 155 LDELKPLLAGKV 166 (298)
T ss_pred HHHHHHHHCCCE
T ss_conf 999999857986
No 447
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=94.90 E-value=0.017 Score=37.07 Aligned_cols=44 Identities=30% Similarity=0.469 Sum_probs=31.3
Q ss_pred HHHCCCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCCEEECCCCCCCCCEE
Q ss_conf 32023024311466318889999855200023454687211000124568358
Q gi|254780809|r 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL 268 (440)
Q Consensus 216 l~~g~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTTRD~i~~~~~i~g~~ 268 (440)
++.|=.++|+||.-+|||||+|.|+|.-. +. ++| ++.+.++|.+
T Consensus 30 i~~Ge~~~ilGpnGsGKSTLl~~i~G~~~----~~-~~~----~G~I~~~g~~ 73 (226)
T cd03234 30 VESGQVMAILGSSGSGKTTLLDAISGRVE----GG-GTT----SGQILFNGQP 73 (226)
T ss_pred EECCCEEEEECCCCCHHHHHHHHHHCCCC----CC-CCC----EEEEEECCEE
T ss_conf 91880999998999609999999967897----89-841----4599999999
No 448
>KOG0464 consensus
Probab=94.87 E-value=0.031 Score=35.33 Aligned_cols=14 Identities=7% Similarity=-0.123 Sum_probs=4.8
Q ss_pred HHHHHHHHHHHHHH
Q ss_conf 66567769988865
Q gi|254780809|r 158 YGQWIDKLTHIRSF 171 (440)
Q Consensus 158 i~~lr~~L~~~~a~ 171 (440)
..+-++.|..-+|.
T Consensus 241 ~ae~knal~~qlad 254 (753)
T KOG0464 241 LAEAKNALCEQLAD 254 (753)
T ss_pred HHHHHHHHHHHHHH
T ss_conf 99999999998861
No 449
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=94.86 E-value=0.037 Score=34.76 Aligned_cols=29 Identities=24% Similarity=0.418 Sum_probs=24.5
Q ss_pred HHHHHCCCEEEECCCCCCHHHHHHHHHCC
Q ss_conf 54320230243114663188899998552
Q gi|254780809|r 214 EIIRNGYKIVILGHSNAGKSSLFNALAKK 242 (440)
Q Consensus 214 ~~l~~g~~v~i~G~pN~GKSSL~N~L~~~ 242 (440)
..++.+..++|.|.+++||.||+|+|++.
T Consensus 155 ~aV~~r~NilI~G~TgSGKTTll~aL~~~ 183 (332)
T PRK13900 155 HAVISKKNIIISGGTSTGKTTFTNAALRE 183 (332)
T ss_pred HHHHCCCCEEEECCCCCCHHHHHHHHHHC
T ss_conf 99864871999888898899999999835
No 450
>COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism]
Probab=94.86 E-value=0.019 Score=36.79 Aligned_cols=42 Identities=33% Similarity=0.483 Sum_probs=30.6
Q ss_pred HHHCCCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCCEEECCCCCCCCCEEE
Q ss_conf 320230243114663188899998552000234546872110001245683589
Q gi|254780809|r 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLV 269 (440)
Q Consensus 216 l~~g~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTTRD~i~~~~~i~g~~~ 269 (440)
+..|-.|+|+|+..+|||||+|-+.|-+. |. .+.+.|+|..+
T Consensus 22 v~~ge~vAi~GpSGaGKSTLLnLIAGF~~------P~------~G~i~i~g~d~ 63 (231)
T COG3840 22 VPAGEIVAILGPSGAGKSTLLNLIAGFET------PA------SGEILINGVDH 63 (231)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHHHCCC------CC------CCEEEECCEEC
T ss_conf 06785799977888657889999874247------78------74589857214
No 451
>cd01854 YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.
Probab=94.76 E-value=0.013 Score=37.86 Aligned_cols=67 Identities=28% Similarity=0.333 Sum_probs=46.3
Q ss_pred HHHHCCEEECCCCCCHH-HH---------HHHCCCCCCCCCCCCCCCCCCCHH-----------HHHHHHHHHHHHHHHH
Q ss_conf 50301102013589856-63---------431289853222233344654200-----------0001333323235899
Q gi|254780809|r 296 VENADLILLLKEINSKK-EI---------SFPKNIDFIFIGTKSDLYSTYTEE-----------YDHLISSFTGEGLEEL 354 (440)
Q Consensus 296 i~~aDlil~v~D~~~~~-~~---------~~~~~~~~i~V~NK~Dl~~~~~~~-----------~~~~ISaktg~Gi~~L 354 (440)
+..-|.++.|+-+.++. .. ....+.+.++|+||+||.+..... ..+.+|+++++|++.|
T Consensus 76 aANiD~v~IV~s~~~p~~~~~~idR~Lv~a~~~~i~pvivlnK~DL~~~~~~~~~~~~~~~~gy~v~~~S~~~~~g~~~L 155 (287)
T cd01854 76 AANVDQLVIVVSLNEPFFNPRLLDRYLVAAEAAGIEPVIVLTKADLLDDEEEELELVEALALGYPVLAVSAKTGEGLDEL 155 (287)
T ss_pred EECCCEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCEEEEEECHHCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCHHHH
T ss_conf 97266899995268998998999999999997799689999862219948999999998729984999966898588999
Q ss_pred HHHHHHHH
Q ss_conf 99999996
Q gi|254780809|r 355 INKIKSIL 362 (440)
Q Consensus 355 ~~~I~~~l 362 (440)
++.+....
T Consensus 156 ~~~l~~k~ 163 (287)
T cd01854 156 REYLKGKT 163 (287)
T ss_pred HHHHCCCE
T ss_conf 98747988
No 452
>KOG0057 consensus
Probab=94.74 E-value=0.019 Score=36.81 Aligned_cols=28 Identities=32% Similarity=0.523 Sum_probs=24.4
Q ss_pred HHHCCCEEEECCCCCCHHHHHHHHHCCH
Q ss_conf 3202302431146631888999985520
Q gi|254780809|r 216 IRNGYKIVILGHSNAGKSSLFNALAKKD 243 (440)
Q Consensus 216 l~~g~~v~i~G~pN~GKSSL~N~L~~~~ 243 (440)
+..|-+|+|+|++-+||||++|.|++--
T Consensus 375 I~kGekVaIvG~nGsGKSTilr~LlrF~ 402 (591)
T KOG0057 375 IPKGEKVAIVGSNGSGKSTILRLLLRFF 402 (591)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHHHHH
T ss_conf 6489789897899987889999999974
No 453
>PRK11819 putative ABC transporter ATP-binding protein; Reviewed
Probab=94.72 E-value=0.038 Score=34.71 Aligned_cols=30 Identities=30% Similarity=0.525 Sum_probs=25.6
Q ss_pred HHHCCCEEEECCCCCCHHHHHHHHHCCHHC
Q ss_conf 320230243114663188899998552000
Q gi|254780809|r 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVA 245 (440)
Q Consensus 216 l~~g~~v~i~G~pN~GKSSL~N~L~~~~~a 245 (440)
++.|=+|+|+|+--+|||||++.|+|....
T Consensus 347 i~~Ge~iaivG~NGsGKSTLlk~l~G~~~p 376 (556)
T PRK11819 347 LPPGGIVGIIGPNGAGKSTLFKMITGQEQP 376 (556)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHCCCCC
T ss_conf 578824789889877588999998386568
No 454
>cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.68 E-value=0.024 Score=36.00 Aligned_cols=42 Identities=29% Similarity=0.458 Sum_probs=32.4
Q ss_pred HHHCCCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCCEEECCCCCCCCCEEE
Q ss_conf 320230243114663188899998552000234546872110001245683589
Q gi|254780809|r 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLV 269 (440)
Q Consensus 216 l~~g~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTTRD~i~~~~~i~g~~~ 269 (440)
+..|=.++|+||..+|||||+|.+.|-++. | ++.+.++|..+
T Consensus 23 v~~Ge~~~iiGpSGsGKSTllr~i~Gl~~p--------~----~G~I~~~g~~v 64 (232)
T cd03300 23 IKEGEFFTLLGPSGCGKTTLLRLIAGFETP--------T----SGEILLDGKDI 64 (232)
T ss_pred ECCCCEEEEECCCCCHHHHHHHHHHCCCCC--------C----CEEEEECCEEC
T ss_conf 879989999999998399999999779999--------8----53999999999
No 455
>cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.66 E-value=0.022 Score=36.32 Aligned_cols=42 Identities=29% Similarity=0.355 Sum_probs=32.3
Q ss_pred HHHCCCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCCEEECCCCCCCCCEEE
Q ss_conf 320230243114663188899998552000234546872110001245683589
Q gi|254780809|r 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLV 269 (440)
Q Consensus 216 l~~g~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTTRD~i~~~~~i~g~~~ 269 (440)
+.+|=.++|+||.-+|||||+|.+.|-... . ++.+.++|..+
T Consensus 21 i~~Ge~~~ilGpSGsGKSTLl~li~Gl~~p----~--------sG~I~i~G~di 62 (211)
T cd03298 21 FAQGEITAIVGPSGSGKSTLLNLIAGFETP----Q--------SGRVLINGVDV 62 (211)
T ss_pred ECCCCEEEEECCCCCHHHHHHHHHHCCCCC----C--------CEEEEECCEEC
T ss_conf 889989999999995599999999769998----8--------52999999999
No 456
>KOG2203 consensus
Probab=94.63 E-value=0.06 Score=33.28 Aligned_cols=15 Identities=27% Similarity=0.457 Sum_probs=7.1
Q ss_pred HHHHHHHHHHHHHHH
Q ss_conf 788988500368899
Q gi|254780809|r 129 ESLADLISSETEMQR 143 (440)
Q Consensus 129 Eai~~LI~A~t~~~~ 143 (440)
|.+.+.|.+++..+.
T Consensus 298 E~~e~fitne~~~e~ 312 (772)
T KOG2203 298 EKLEEFITNEKWLEL 312 (772)
T ss_pred HHHHHHHHHHHHHHH
T ss_conf 888876512009888
No 457
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=94.57 E-value=0.023 Score=36.15 Aligned_cols=49 Identities=24% Similarity=0.253 Sum_probs=33.2
Q ss_pred CCCEEEECCCCCCHHHHHHHHHCC-HHCCCCCCCCCCEEECCCCCCCCCEEEEEE
Q ss_conf 230243114663188899998552-000234546872110001245683589995
Q gi|254780809|r 219 GYKIVILGHSNAGKSSLFNALAKK-DVAIVTDIPGTTRDVLTIDLDLEGYLVKIS 272 (440)
Q Consensus 219 g~~v~i~G~pN~GKSSL~N~L~~~-~~aIVs~~~GTTRD~i~~~~~i~g~~~~l~ 272 (440)
|.-++|.||.-||||||+++|..+ ...++..+--|||-. ..+|..+.++
T Consensus 2 G~LivvsgPSGaGK~Tli~~l~~~~~~~~~~s~s~tTRp~-----e~~g~dy~fv 51 (184)
T PRK10078 2 GKLIWLMGPSGSGKDSLLAALRQREQTQLLVAHRYITRPA-----SAGSENHIAL 51 (184)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHCCCCCEEEEEEECCCCC-----CCCCCCCEEC
T ss_conf 7099998998699999999998448998899987237899-----9999682887
No 458
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=94.50 E-value=0.024 Score=36.02 Aligned_cols=43 Identities=33% Similarity=0.413 Sum_probs=30.8
Q ss_pred HHHCCCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCCEEECCCCCCCCCEE
Q ss_conf 32023024311466318889999855200023454687211000124568358
Q gi|254780809|r 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYL 268 (440)
Q Consensus 216 l~~g~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTTRD~i~~~~~i~g~~ 268 (440)
+..|-.++|+|+.-+|||||++.|+|.-. + .. .+..+.++|.+
T Consensus 32 v~~Gei~~ilGpnGaGKSTLl~~l~Gl~~----~--~~----~~G~i~~~g~~ 74 (194)
T cd03213 32 AKPGELTAIMGPSGAGKSTLLNALAGRRT----G--LG----VSGEVLINGRP 74 (194)
T ss_pred EECCEEEEEECCCCCHHHHHHHHHHCCCC----C--CC----CEEEEEECCEE
T ss_conf 90881999998999519999999857777----8--99----62899999999
No 459
>KOG2423 consensus
Probab=94.50 E-value=0.034 Score=35.03 Aligned_cols=86 Identities=17% Similarity=0.296 Sum_probs=52.7
Q ss_pred HHCC-CCHHHHHHHHHH-----HHHHHHHHCCEEECCCCCCHHH------HHHHC----CCCCCCCCCCCCCCCCCCHHH
Q ss_conf 0002-410356666788-----8998503011020135898566------34312----898532222333446542000
Q gi|254780809|r 276 GIRE-TDDIVEKEGIKR-----TFLEVENADLILLLKEINSKKE------ISFPK----NIDFIFIGTKSDLYSTYTEEY 339 (440)
Q Consensus 276 Gir~-t~d~IE~~GI~r-----a~~~i~~aDlil~v~D~~~~~~------~~~~~----~~~~i~V~NK~Dl~~~~~~~~ 339 (440)
|.|. ..+.|-..|..+ -++-++.+|+++.|+|+.++.. ..+++ .+-+|+|+||+||.+.+....
T Consensus 185 g~~~~~~~~if~kGQSkRIW~ELyKViDSSDVvvqVlDARDPmGTrc~~ve~ylkke~phKHli~vLNKvDLVPtwvt~~ 264 (572)
T KOG2423 185 GVRKAARDAIFSKGQSKRIWGELYKVIDSSDVVVQVLDARDPMGTRCKHVEEYLKKEKPHKHLIYVLNKVDLVPTWVTAK 264 (572)
T ss_pred CCHHHHHHHHHHCCCHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCCHHHHHHHHHCCCCCEEEEEEECCCCCCHHHHHH
T ss_conf 21688888887546305789988875032203688521568766541789999863287521688851355001888999
Q ss_pred H------------HHHHHHHHHHHHHHHHHHHHH
Q ss_conf 0------------013333232358999999999
Q gi|254780809|r 340 D------------HLISSFTGEGLEELINKIKSI 361 (440)
Q Consensus 340 ~------------~~ISaktg~Gi~~L~~~I~~~ 361 (440)
. +.-|..+.-|-..|++.+.++
T Consensus 265 Wv~~lSkeyPTiAfHAsi~nsfGKgalI~llRQf 298 (572)
T KOG2423 265 WVRHLSKEYPTIAFHASINNSFGKGALIQLLRQF 298 (572)
T ss_pred HHHHHHHHCCCEEEEHHHCCCCCHHHHHHHHHHH
T ss_conf 9999752276245402223765216999999999
No 460
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.49 E-value=0.026 Score=35.87 Aligned_cols=45 Identities=24% Similarity=0.417 Sum_probs=31.6
Q ss_pred HHHCCCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCCEEECCCCCCCCCEEE
Q ss_conf 320230243114663188899998552000234546872110001245683589
Q gi|254780809|r 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLV 269 (440)
Q Consensus 216 l~~g~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTTRD~i~~~~~i~g~~~ 269 (440)
++.|=.++|+|+.-+|||||+|.|+|.-. +.. .++..+.++|.++
T Consensus 30 i~~Gei~~llG~nGsGKSTLl~~l~G~~~----~~~-----~~~G~i~~~g~~~ 74 (202)
T cd03233 30 VKPGEMVLVLGRPGSGCSTLLKALANRTE----GNV-----SVEGDIHYNGIPY 74 (202)
T ss_pred ECCCEEEEEECCCCCCHHHHHHHHHCCCC----CCC-----CEEEEEEECCEEC
T ss_conf 80984999998999988999999837878----987-----5137999999994
No 461
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=94.44 E-value=0.03 Score=35.35 Aligned_cols=42 Identities=29% Similarity=0.455 Sum_probs=31.9
Q ss_pred HHHCCCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCCEEECCCCCCCCCEEE
Q ss_conf 320230243114663188899998552000234546872110001245683589
Q gi|254780809|r 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLV 269 (440)
Q Consensus 216 l~~g~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTTRD~i~~~~~i~g~~~ 269 (440)
+.+|=-++|+||.-+|||||+|.+.|-++. . ++.+.++|..+
T Consensus 24 i~~Ge~v~i~GpSGsGKSTLl~~i~gl~~p----~--------sG~i~i~g~~~ 65 (214)
T cd03292 24 ISAGEFVFLVGPSGAGKSTLLKLIYKEELP----T--------SGTIRVNGQDV 65 (214)
T ss_pred ECCCCEEEEECCCCCHHHHHHHHHHCCCCC----C--------CEEEEECCEEC
T ss_conf 859989999979995399999999629898----8--------64999999998
No 462
>PRK01889 ribosome-associated GTPase; Reviewed
Probab=94.44 E-value=0.018 Score=36.87 Aligned_cols=66 Identities=20% Similarity=0.316 Sum_probs=43.4
Q ss_pred HHHHHCCEEECCCCCCHHHHH---------HHCCCCCCCCCCCCCCCCCCCH-----------HHHHHHHHHHHHHHHHH
Q ss_conf 850301102013589856634---------3128985322223334465420-----------00001333323235899
Q gi|254780809|r 295 EVENADLILLLKEINSKKEIS---------FPKNIDFIFIGTKSDLYSTYTE-----------EYDHLISSFTGEGLEEL 354 (440)
Q Consensus 295 ~i~~aDlil~v~D~~~~~~~~---------~~~~~~~i~V~NK~Dl~~~~~~-----------~~~~~ISaktg~Gi~~L 354 (440)
.+...|.++.|.-...+.... ...+.+-++|+||+||.+.... -..+.+|+++++|++.|
T Consensus 108 iAANiD~v~IV~s~~~~fn~~rieRyLv~a~~~g~~pvivLnK~DL~~d~~~~~~~~~~~~~g~~v~~vSa~~~~gl~~L 187 (353)
T PRK01889 108 IAANVDTVFIVCSLNHDFNLRRIERYLALAWESGAEPVVVLTKADLCEDVEEKIAEVEALAPGVPVLAVNALDGEGVDAL 187 (353)
T ss_pred EEECCCEEEEEECCCCCCCHHHHHHHHHHHHHCCCCEEEEEECCCCCCCHHHHHHHHHHHCCCCEEEEEECCCCCCHHHH
T ss_conf 99717689999528999797899999999998699679999665566799999999998559975999978998478999
Q ss_pred HHHHHH
Q ss_conf 999999
Q gi|254780809|r 355 INKIKS 360 (440)
Q Consensus 355 ~~~I~~ 360 (440)
...+..
T Consensus 188 ~~~l~~ 193 (353)
T PRK01889 188 QAWLKP 193 (353)
T ss_pred HHHHHC
T ss_conf 998634
No 463
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=94.43 E-value=0.091 Score=32.04 Aligned_cols=28 Identities=46% Similarity=0.661 Sum_probs=24.4
Q ss_pred HHHHCCCEEEECCCCCCHHHHHHHHHCC
Q ss_conf 4320230243114663188899998552
Q gi|254780809|r 215 IIRNGYKIVILGHSNAGKSSLFNALAKK 242 (440)
Q Consensus 215 ~l~~g~~v~i~G~pN~GKSSL~N~L~~~ 242 (440)
.++.|=++.|.|++-+|||||+-+|.|=
T Consensus 415 ~v~~G~~llI~G~SG~GKTsLlRaiaGL 442 (604)
T COG4178 415 EVRPGERLLITGESGAGKTSLLRALAGL 442 (604)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHHCC
T ss_conf 5479987998789998788999999645
No 464
>KOG0446 consensus
Probab=94.41 E-value=0.037 Score=34.76 Aligned_cols=118 Identities=24% Similarity=0.213 Sum_probs=61.2
Q ss_pred HCCCEEEECCCCCCHHHHHHHHHCCH-----HCCCCCCC----------------C-CCEEECCCCCC------------
Q ss_conf 02302431146631888999985520-----00234546----------------8-72110001245------------
Q gi|254780809|r 218 NGYKIVILGHSNAGKSSLFNALAKKD-----VAIVTDIP----------------G-TTRDVLTIDLD------------ 263 (440)
Q Consensus 218 ~g~~v~i~G~pN~GKSSL~N~L~~~~-----~aIVs~~~----------------G-TTRD~i~~~~~------------ 263 (440)
.-+.|+++|.+-+||||.++.++|++ .-|||..| . .|+|......+
T Consensus 28 ~lP~I~vvG~QSsGKSSvLE~lvG~~flpRg~givTRrPlvlqL~~~~~~~~e~~~f~~h~~~~~~~D~~~vrkeI~~et 107 (657)
T KOG0446 28 PLPQIVVVGGQSSGKSSVLESLVGFVFLPRGVGIVTRRPLILQLSIVAGGDEEEASFLTHDKKKRFTDFEEVRKEIRSET 107 (657)
T ss_pred CCCCEEEECCCCCCCHHHHHHHHCCCCCCCCCCCEECCCCEEECCCCCCCCCCCHHHHHCCCCCCCCCHHHHHHHHHHHH
T ss_conf 78856997798886117999852663567766754146502442324788653123221277523588799999988628
Q ss_pred ---------CC------------CEEEEEEECCHHCCC-----CHHHHHHHHHHHHHHHHHHCCEEECCCCCCH-----H
Q ss_conf ---------68------------358999508100024-----1035666678889985030110201358985-----6
Q gi|254780809|r 264 ---------LE------------GYLVKISDTAGIRET-----DDIVEKEGIKRTFLEVENADLILLLKEINSK-----K 312 (440)
Q Consensus 264 ---------i~------------g~~~~l~DTaGir~t-----~d~IE~~GI~ra~~~i~~aDlil~v~D~~~~-----~ 312 (440)
+. -...+++|.||+-.. .+.||..=-..-.+.+..-..++..+.+.+. +
T Consensus 108 ~~~~g~~kgiS~~pI~L~i~s~~v~~lTlvDlPG~tkvpv~dqp~di~~qI~~mi~~yi~~~~~iILav~~an~d~ats~ 187 (657)
T KOG0446 108 DRITGSNKGISPVPITLKIFSALVANLTLVDLPGLTKVPVADQPDDIEEEIKSMIEEYIEKPNRIILAVTPANSDIATSP 187 (657)
T ss_pred HHHHCCCCCCCCCCEEEEECCCCCCCHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHCCCHHHHHHCCH
T ss_conf 87608998868887157506888851431678987346779998458999999999855663025652150454543478
Q ss_pred HHHH-----HCCCCCCCCCCCCCCCCCC
Q ss_conf 6343-----1289853222233344654
Q gi|254780809|r 313 EISF-----PKNIDFIFIGTKSDLYSTY 335 (440)
Q Consensus 313 ~~~~-----~~~~~~i~V~NK~Dl~~~~ 335 (440)
.+.. +.+...+-|++|.|+.++-
T Consensus 188 alkiarevDp~g~RTigvitK~DlmdkG 215 (657)
T KOG0446 188 ALVVAREVDPGGSRTLEVITKFDFMDKG 215 (657)
T ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHCC
T ss_conf 9999986188766125886507764338
No 465
>PRK13546 teichoic acids export protein ATP-binding subunit; Provisional
Probab=94.40 E-value=0.028 Score=35.59 Aligned_cols=35 Identities=26% Similarity=0.302 Sum_probs=27.9
Q ss_pred HHHHCCCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCC
Q ss_conf 432023024311466318889999855200023454687
Q gi|254780809|r 215 IIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGT 253 (440)
Q Consensus 215 ~l~~g~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GT 253 (440)
.+.+|=.++|+|+..+|||||+|.++|-- .+..|+
T Consensus 46 ~i~~GEivgllG~NGaGKSTLlk~I~Gl~----~P~~G~ 80 (264)
T PRK13546 46 KAYEGDVIGLVGINGSGKSTLSNIIGGSL----SPTVGK 80 (264)
T ss_pred EECCCCEEEEECCCCCHHHHHHHHHHCCC----CCCCCE
T ss_conf 88599899999899861999999996798----888747
No 466
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=94.40 E-value=0.03 Score=35.43 Aligned_cols=88 Identities=27% Similarity=0.365 Sum_probs=59.0
Q ss_pred CCCEEEECCCC---CCHHHHHHHHHCCHHCCCCCCCCCCEEECCCCCCCCCEEEEEEEC-CHHCCCCHHHHHHHHHHHHH
Q ss_conf 23024311466---318889999855200023454687211000124568358999508-10002410356666788899
Q gi|254780809|r 219 GYKIVILGHSN---AGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDT-AGIRETDDIVEKEGIKRTFL 294 (440)
Q Consensus 219 g~~v~i~G~pN---~GKSSL~N~L~~~~~aIVs~~~GTTRD~i~~~~~i~g~~~~l~DT-aGir~t~d~IE~~GI~ra~~ 294 (440)
.+++..+|+|- -|=---+|+|+.+ .++ ++..+...+.++|| ||| |..| +.
T Consensus 98 ~~~LLvmGkie~~GeGC~Cp~~allR~--------------~l~-~l~~~~~e~VivDtEAGi-------EHfg----Rg 151 (255)
T COG3640 98 DIDLLVMGKIEEGGEGCACPMNALLRR--------------LLR-HLILNRYEVVIVDTEAGI-------EHFG----RG 151 (255)
T ss_pred CCCEEEECCCCCCCCCCCCHHHHHHHH--------------HHH-HHHCCCCCEEEEECCCCH-------HHHC----CC
T ss_conf 800799525567997431627899999--------------999-975166748999633456-------6656----56
Q ss_pred HHHHHCCEEECCCCCCHHH--------HHHHCC-CCCCCCCCCCCCC
Q ss_conf 8503011020135898566--------343128-9853222233344
Q gi|254780809|r 295 EVENADLILLLKEINSKKE--------ISFPKN-IDFIFIGTKSDLY 332 (440)
Q Consensus 295 ~i~~aDlil~v~D~~~~~~--------~~~~~~-~~~i~V~NK~Dl~ 332 (440)
.++.+|+++.|+|++.+.. +...-+ +++.+|+||.|-.
T Consensus 152 ~~~~vD~vivVvDpS~~sl~taeri~~L~~elg~k~i~~V~NKv~e~ 198 (255)
T COG3640 152 TIEGVDLVIVVVDPSYKSLRTAERIKELAEELGIKRIFVVLNKVDEE 198 (255)
T ss_pred CCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHCCCEEEEEEEECCCH
T ss_conf 32578779999578778888899999999871875499999503411
No 467
>CHL00131 ycf16 sulfate ABC transporter protein; Validated
Probab=94.38 E-value=0.027 Score=35.68 Aligned_cols=46 Identities=28% Similarity=0.312 Sum_probs=32.5
Q ss_pred HHHHCCCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCCEEECCCCCCCCCEEEE
Q ss_conf 43202302431146631888999985520002345468721100012456835899
Q gi|254780809|r 215 IIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVK 270 (440)
Q Consensus 215 ~l~~g~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTTRD~i~~~~~i~g~~~~ 270 (440)
.++.|=.++|+|+.-+|||||+|.|+|.. ..+. .++.+.++|..+.
T Consensus 28 ~i~~Gei~aiiG~nGsGKSTL~~~i~G~~--~~~~--------~~G~I~~~G~~i~ 73 (252)
T CHL00131 28 SINAGEIHAIMGPNGSGKSTLSKVIAGHP--AYTV--------LEGDILFKGESIL 73 (252)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHCCCC--CCCC--------CCCEEEECCEECC
T ss_conf 88799899999999999999999972787--6676--------6425998772768
No 468
>pfam00437 GSPII_E Type II/IV secretion system protein. This family contains both type II and type IV pathway secretion proteins from bacteria. VirB11 ATPase is a subunit of the Agrobacterium tumefaciens transfer DNA (T-DNA) transfer system, a type IV secretion pathway required for delivery of T-DNA and effector proteins to plant cells during infection.
Probab=94.37 E-value=0.032 Score=35.16 Aligned_cols=26 Identities=27% Similarity=0.470 Sum_probs=22.3
Q ss_pred HHCCCEEEECCCCCCHHHHHHHHHCC
Q ss_conf 20230243114663188899998552
Q gi|254780809|r 217 RNGYKIVILGHSNAGKSSLFNALAKK 242 (440)
Q Consensus 217 ~~g~~v~i~G~pN~GKSSL~N~L~~~ 242 (440)
+.+-.+++.|++++||+|++|+|+..
T Consensus 137 ~~~~~ilIsG~TGSGKTT~l~all~~ 162 (283)
T pfam00437 137 QARGNILVSGGTGSGKTTLLYALLNE 162 (283)
T ss_pred HCCCEEEEECCCCCCHHHHHHHHHHH
T ss_conf 81975999889999889999999984
No 469
>KOG1533 consensus
Probab=94.36 E-value=0.052 Score=33.70 Aligned_cols=112 Identities=21% Similarity=0.332 Sum_probs=63.3
Q ss_pred CCEEEECCCCCCHHHHHHHHH------CCHHCCCCCCCCCCEEE----------C------------------------C
Q ss_conf 302431146631888999985------52000234546872110----------0------------------------0
Q gi|254780809|r 220 YKIVILGHSNAGKSSLFNALA------KKDVAIVTDIPGTTRDV----------L------------------------T 259 (440)
Q Consensus 220 ~~v~i~G~pN~GKSSL~N~L~------~~~~aIVs~~~GTTRD~----------i------------------------~ 259 (440)
+-.+++|||.+||||..|-.. |+..++|-=-|+---+. + +
T Consensus 3 fgqvVIGPPgSGKsTYc~g~~~fls~~gr~~~vVNLDPaNd~~~Y~~~v~I~elit~edvm~~~~LGPNg~l~yc~E~l~ 82 (290)
T KOG1533 3 FGQVVIGPPGSGKSTYCNGMSQFLSAIGRPVAVVNLDPANDNLPYECAVDIRELITVEDVMEELGLGPNGALKYCMEYLE 82 (290)
T ss_pred CCEEEECCCCCCCCCHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCHHHHCCHHHHHHHHCCCCCHHHHHHHHHHH
T ss_conf 50688769999853113209999997489627995687656788877651999713999999858799612799999998
Q ss_pred CCCCC-------CCEEEEEEECCHHCC---CCHHHHHHHHHHHHHHHHHHCC---EEECCCC---CCHHHH-H-------
Q ss_conf 12456-------835899950810002---4103566667888998503011---0201358---985663-4-------
Q gi|254780809|r 260 IDLDL-------EGYLVKISDTAGIRE---TDDIVEKEGIKRTFLEVENADL---ILLLKEI---NSKKEI-S------- 315 (440)
Q Consensus 260 ~~~~i-------~g~~~~l~DTaGir~---t~d~IE~~GI~ra~~~i~~aDl---il~v~D~---~~~~~~-~------- 315 (440)
..++| .-..+.++|-||--| ..|.. .+-++.+++.|+ ++.++|. +++... .
T Consensus 83 ~~idwl~~~l~~~~~~Y~lFDcPGQVELft~h~~l-----~~I~~~Lek~~~rl~~V~LiDs~ycs~p~~~iS~lL~sl~ 157 (290)
T KOG1533 83 ANIDWLLEKLKPLTDHYVLFDCPGQVELFTHHDSL-----NKIFRKLEKLDYRLVAVNLIDSHYCSDPSKFISSLLVSLA 157 (290)
T ss_pred HHHHHHHHHHHHCCCCEEEEECCCCEEEEECCCHH-----HHHHHHHHHCCCEEEEEEEEECEEECCHHHHHHHHHHHHH
T ss_conf 54499999745234748999579827987425609-----9999999976953799973302143784899999999999
Q ss_pred --HHCCCCCCCCCCCCCCCCCCC
Q ss_conf --312898532222333446542
Q gi|254780809|r 316 --FPKNIDFIFIGTKSDLYSTYT 336 (440)
Q Consensus 316 --~~~~~~~i~V~NK~Dl~~~~~ 336 (440)
..-..|.+-|+.|+|+.++..
T Consensus 158 tMl~melphVNvlSK~Dl~~~yg 180 (290)
T KOG1533 158 TMLHMELPHVNVLSKADLLKKYG 180 (290)
T ss_pred HHHHHCCCCHHHHHHHHHHHHHC
T ss_conf 99862365001425767787616
No 470
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=94.29 E-value=0.2 Score=29.60 Aligned_cols=45 Identities=22% Similarity=0.257 Sum_probs=28.2
Q ss_pred HCCCHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHC
Q ss_conf 0100011212333223455432023024311466318889999855
Q gi|254780809|r 196 ILFLKNDISSHISQGKLGEIIRNGYKIVILGHSNAGKSSLFNALAK 241 (440)
Q Consensus 196 i~~i~~~l~~ll~~~~~~~~l~~g~~v~i~G~pN~GKSSL~N~L~~ 241 (440)
+...++.+-+.+.-.+... -..|.-++++|||-|||.||-..+..
T Consensus 327 L~~vKeRile~lAv~~~~~-~~kg~IlclvGpPGvGKTSl~~sIA~ 371 (784)
T PRK10787 327 LERVKDRILEYLAVQSRVN-KIKGPILCLVGPPGVGKTSLGQSIAK 371 (784)
T ss_pred HHHHHHHHHHHHHHHHHCC-CCCCCEEEEECCCCCCHHHHHHHHHH
T ss_conf 5779999999999998624-67787799646998772469999999
No 471
>PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional
Probab=94.27 E-value=0.031 Score=35.29 Aligned_cols=31 Identities=39% Similarity=0.500 Sum_probs=26.5
Q ss_pred HHHHHCCCEEEECCCCCCHHHHHHHHHCCHH
Q ss_conf 5432023024311466318889999855200
Q gi|254780809|r 214 EIIRNGYKIVILGHSNAGKSSLFNALAKKDV 244 (440)
Q Consensus 214 ~~l~~g~~v~i~G~pN~GKSSL~N~L~~~~~ 244 (440)
-.++.|=.++|+|+--+|||||+|.+.|-..
T Consensus 20 l~i~~GE~v~iiG~nGaGKSTLl~~i~Gll~ 50 (233)
T PRK10771 20 LTVERGEQVAILGPSGAGKSTLLNLIAGFLT 50 (233)
T ss_pred EEECCCCEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 8988998999999999819999999965999
No 472
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=94.27 E-value=0.037 Score=34.74 Aligned_cols=29 Identities=14% Similarity=0.354 Sum_probs=24.9
Q ss_pred HHHHHCCCEEEECCCCCCHHHHHHHHHCC
Q ss_conf 54320230243114663188899998552
Q gi|254780809|r 214 EIIRNGYKIVILGHSNAGKSSLFNALAKK 242 (440)
Q Consensus 214 ~~l~~g~~v~i~G~pN~GKSSL~N~L~~~ 242 (440)
..++.+..++|.|.+++||.||+|+|++.
T Consensus 157 ~aV~~r~NIlIsGgTGSGKTTllnALl~~ 185 (343)
T PRK13851 157 ACVVGRLTMLLCGPTGSGKTTMSKTLISA 185 (343)
T ss_pred HHHHCCCCEEEECCCCCCHHHHHHHHHHC
T ss_conf 99976988999888986199999999962
No 473
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.24 E-value=0.03 Score=35.35 Aligned_cols=41 Identities=27% Similarity=0.370 Sum_probs=30.4
Q ss_pred HHHCCCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCCEEECCCCCCCCCEEE
Q ss_conf 320230243114663188899998552000234546872110001245683589
Q gi|254780809|r 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLV 269 (440)
Q Consensus 216 l~~g~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTTRD~i~~~~~i~g~~~ 269 (440)
+..| -++|+||--||||||+|.|+|--. +. ++.+.++|..+
T Consensus 23 i~~G-i~gllGpNGAGKSTll~~i~Gl~~----p~--------sG~i~i~g~~~ 63 (211)
T cd03264 23 LGPG-MYGLLGPNGAGKTTLMRILATLTP----PS--------SGTIRIDGQDV 63 (211)
T ss_pred ECCC-EEEEECCCCCHHHHHHHHHHCCCC----CC--------CEEEEECCEEC
T ss_conf 8897-599999998239999999975966----89--------62999999996
No 474
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.20 E-value=0.037 Score=34.79 Aligned_cols=42 Identities=26% Similarity=0.342 Sum_probs=32.8
Q ss_pred HHHCCCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCCEEECCCCCCCCCEEE
Q ss_conf 320230243114663188899998552000234546872110001245683589
Q gi|254780809|r 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLV 269 (440)
Q Consensus 216 l~~g~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTTRD~i~~~~~i~g~~~ 269 (440)
+.+|=-++|+|+.-+|||||++.|.|-.+. -++.+.++|..+
T Consensus 24 i~~Ge~~~iiGpsGsGKSTLl~~i~gl~~p------------~~G~I~~~g~~i 65 (241)
T cd03256 24 INPGEFVALIGPSGAGKSTLLRCLNGLVEP------------TSGSVLIDGTDI 65 (241)
T ss_pred ECCCCEEEEECCCCCHHHHHHHHHHCCCCC------------CCEEEEECCEEC
T ss_conf 999989999999983399999999749999------------855999999998
No 475
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=94.18 E-value=0.036 Score=34.87 Aligned_cols=43 Identities=23% Similarity=0.288 Sum_probs=32.8
Q ss_pred HHHCCCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCCEEECCCCCCCCCEEEE
Q ss_conf 3202302431146631888999985520002345468721100012456835899
Q gi|254780809|r 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVK 270 (440)
Q Consensus 216 l~~g~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTTRD~i~~~~~i~g~~~~ 270 (440)
+.+|=.++|+|+.-+|||||++.+.|-.. +. ++.+.++|.++.
T Consensus 28 i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~----p~--------~G~I~~~g~~i~ 70 (228)
T cd03257 28 IKKGETLGLVGESGSGKSTLARAILGLLK----PT--------SGSIIFDGKDLL 70 (228)
T ss_pred ECCCCEEEEECCCCCHHHHHHHHHHCCCC----CC--------CCEEEECCEECC
T ss_conf 86998999999999869999999972898----78--------866998996467
No 476
>KOG0743 consensus
Probab=94.18 E-value=0.037 Score=34.72 Aligned_cols=43 Identities=26% Similarity=0.492 Sum_probs=32.5
Q ss_pred CCHHHHHHHHHHH----HHHHHHHHCCCEEEECCCCCCHHHHHHHHHCC
Q ss_conf 0001121233322----34554320230243114663188899998552
Q gi|254780809|r 198 FLKNDISSHISQG----KLGEIIRNGYKIVILGHSNAGKSSLFNALAKK 242 (440)
Q Consensus 198 ~i~~~l~~ll~~~----~~~~~l~~g~~v~i~G~pN~GKSSL~N~L~~~ 242 (440)
.+..++..+++.. +.|+.++.| -.+.|||-.||||++-|+.+.
T Consensus 212 ~I~~Dl~~F~k~k~~YkrvGkawKRG--YLLYGPPGTGKSS~IaAmAn~ 258 (457)
T KOG0743 212 RIIDDLDDFIKGKDFYKRVGKAWKRG--YLLYGPPGTGKSSFIAAMANY 258 (457)
T ss_pred HHHHHHHHHHHCCHHHHHCCCCCCCC--CEEECCCCCCHHHHHHHHHHH
T ss_conf 99999999972235788648450004--120479999888999999720
No 477
>PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional
Probab=94.17 E-value=0.039 Score=34.61 Aligned_cols=43 Identities=21% Similarity=0.372 Sum_probs=32.0
Q ss_pred HHHHCCCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCCEEECCCCCCCCCEEE
Q ss_conf 4320230243114663188899998552000234546872110001245683589
Q gi|254780809|r 215 IIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLV 269 (440)
Q Consensus 215 ~l~~g~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTTRD~i~~~~~i~g~~~ 269 (440)
.+..|=.++|+|+--+|||||++.|+|..+ +. ++.+.++|.++
T Consensus 27 ~i~~Gei~~liG~NGaGKSTLl~~i~G~~~----~~--------~G~I~~~G~~i 69 (237)
T PRK11614 27 HINQGEIVTLIGANGAGKTTLLGTLCGDPR----AT--------SGRIVFDGKDI 69 (237)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHHCCCC----CC--------CEEEEECCEEC
T ss_conf 986997999987999759999999967998----89--------62899999988
No 478
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=94.17 E-value=0.037 Score=34.72 Aligned_cols=43 Identities=26% Similarity=0.328 Sum_probs=33.8
Q ss_pred HHHHCCCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCCEEECCCCCCCCCEEE
Q ss_conf 4320230243114663188899998552000234546872110001245683589
Q gi|254780809|r 215 IIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLV 269 (440)
Q Consensus 215 ~l~~g~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTTRD~i~~~~~i~g~~~ 269 (440)
.+.+|=.++|+||.-+|||||++.+.|-+.. -++.+.++|..+
T Consensus 22 ~v~~Ge~~~i~GpSG~GKSTlLr~iaGl~~p------------~~G~I~~~g~~i 64 (213)
T cd03301 22 DIADGEFVVLLGPSGCGKTTTLRMIAGLEEP------------TSGRIYIGGRDV 64 (213)
T ss_pred EECCCCEEEEECCCCCHHHHHHHHHHCCCCC------------CCEEEEECCEEC
T ss_conf 9869989999999988099999999769999------------863999999999
No 479
>pfam06858 NOG1 Nucleolar GTP-binding protein 1 (NOG1). This family represents a conserved region of approximately 60 residues in length within nucleolar GTP-binding protein 1 (NOG1). In S. cerevisiae, the NOG1 gene has been shown to be essential for cell viability, suggesting that NOG1 may play an important role in nucleolar functions. Family members include eukaryotic, bacterial and archaeal proteins.
Probab=94.16 E-value=0.046 Score=34.12 Aligned_cols=44 Identities=20% Similarity=0.301 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHHHCCEEECCCCCCHHH------H-------HHHCCCCCCCCCCCCC
Q ss_conf 566667888998503011020135898566------3-------4312898532222333
Q gi|254780809|r 284 VEKEGIKRTFLEVENADLILLLKEINSKKE------I-------SFPKNIDFIFIGTKSD 330 (440)
Q Consensus 284 IE~~GI~ra~~~i~~aDlil~v~D~~~~~~------~-------~~~~~~~~i~V~NK~D 330 (440)
||+..|. |++.+ ++.|||++|++.... . ....++|+++|.||+|
T Consensus 2 IE~qAI~-AL~hL--~~~vlf~~D~Se~cgysie~Q~~L~~eik~~f~~~p~i~V~nK~D 58 (58)
T pfam06858 2 IEKQAIT-ALAHL--RAAVLFVFDPSEQCGYSLEEQLHLFKEIKPLFKNKPVIVVLNKID 58 (58)
T ss_pred HHHHHHH-HHHHC--CCEEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEECCC
T ss_conf 6789999-99836--770899981897669899999999999998749981899972679
No 480
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=94.16 E-value=0.032 Score=35.20 Aligned_cols=28 Identities=50% Similarity=0.646 Sum_probs=24.7
Q ss_pred HHHCCCEEEECCCCCCHHHHHHHHHCCH
Q ss_conf 3202302431146631888999985520
Q gi|254780809|r 216 IRNGYKIVILGHSNAGKSSLFNALAKKD 243 (440)
Q Consensus 216 l~~g~~v~i~G~pN~GKSSL~N~L~~~~ 243 (440)
+..|=+++|+|+.-+|||||++.|+|-.
T Consensus 24 i~~Ge~v~i~G~sGsGKSTLl~~l~Gl~ 51 (166)
T cd03223 24 IKPGDRLLITGPSGTGKSSLFRALAGLW 51 (166)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHCCCC
T ss_conf 8899999999589998899999986987
No 481
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=94.13 E-value=0.43 Score=27.39 Aligned_cols=110 Identities=23% Similarity=0.331 Sum_probs=62.6
Q ss_pred CCCEEEECCCCCCHHHHHHHHHCCH----H---------------------------CCCCCCCCCC-----EEECCCCC
Q ss_conf 2302431146631888999985520----0---------------------------0234546872-----11000124
Q gi|254780809|r 219 GYKIVILGHSNAGKSSLFNALAKKD----V---------------------------AIVTDIPGTT-----RDVLTIDL 262 (440)
Q Consensus 219 g~~v~i~G~pN~GKSSL~N~L~~~~----~---------------------------aIVs~~~GTT-----RD~i~~~~ 262 (440)
...+.++|---+||+|-+-.|..+- . -+|+..+|.. .|-++. -
T Consensus 139 p~Vil~vGVNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~~~~G~DpAaVafDAi~~-A 217 (340)
T COG0552 139 PFVILFVGVNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGERLGVPVISGKEGADPAAVAFDAIQA-A 217 (340)
T ss_pred CEEEEEEECCCCCHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHHHHHCCEEECCCCCCCCHHHHHHHHHH-H
T ss_conf 679999934888637179999999997898699982334789999999999999599278259999808999999999-9
Q ss_pred CCCCEEEEEEECCHHCCCC-HHHHHHHHHHHHHHHHHHCC-----EEECCCCCCHHH-H----HHHCCCCC-CCCCCCCC
Q ss_conf 5683589995081000241-03566667888998503011-----020135898566-3----43128985-32222333
Q gi|254780809|r 263 DLEGYLVKISDTAGIRETD-DIVEKEGIKRTFLEVENADL-----ILLLKEINSKKE-I----SFPKNIDF-IFIGTKSD 330 (440)
Q Consensus 263 ~i~g~~~~l~DTaGir~t~-d~IE~~GI~ra~~~i~~aDl-----il~v~D~~~~~~-~----~~~~~~~~-i~V~NK~D 330 (440)
.-.|+.+.|+||||=.+++ |..+.+ +|-.+.++..+. +++++|+..-+. + .+.+..++ =++++|.|
T Consensus 218 kar~~DvvliDTAGRLhnk~nLM~EL--~KI~rV~~k~~~~ap~e~llvlDAttGqnal~QAk~F~eav~l~GiIlTKlD 295 (340)
T COG0552 218 KARGIDVVLIDTAGRLHNKKNLMDEL--KKIVRVIKKDDPDAPHEILLVLDATTGQNALSQAKIFNEAVGLDGIILTKLD 295 (340)
T ss_pred HHCCCCEEEEECCCCCCCCHHHHHHH--HHHHHHHCCCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHCCCCEEEEEECC
T ss_conf 97699999996755445736689999--9999984645689984289997756475689999999875288669997024
Q ss_pred C
Q ss_conf 4
Q gi|254780809|r 331 L 331 (440)
Q Consensus 331 l 331 (440)
-
T Consensus 296 g 296 (340)
T COG0552 296 G 296 (340)
T ss_pred C
T ss_conf 6
No 482
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=94.10 E-value=0.034 Score=35.01 Aligned_cols=27 Identities=26% Similarity=0.486 Sum_probs=24.2
Q ss_pred HHHCCCEEEECCCCCCHHHHHHHHHCC
Q ss_conf 320230243114663188899998552
Q gi|254780809|r 216 IRNGYKIVILGHSNAGKSSLFNALAKK 242 (440)
Q Consensus 216 l~~g~~v~i~G~pN~GKSSL~N~L~~~ 242 (440)
++.|=.++|+||--+|||||+|.|+|-
T Consensus 23 v~~Gei~~iiGpnGaGKSTLl~~i~G~ 49 (200)
T cd03217 23 IKKGEVHALMGPNGSGKSTLAKTIMGH 49 (200)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHCCC
T ss_conf 879989999968999999999997077
No 483
>cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=94.10 E-value=0.034 Score=35.00 Aligned_cols=29 Identities=34% Similarity=0.464 Sum_probs=25.1
Q ss_pred HHHCCCEEEECCCCCCHHHHHHHHHCCHH
Q ss_conf 32023024311466318889999855200
Q gi|254780809|r 216 IRNGYKIVILGHSNAGKSSLFNALAKKDV 244 (440)
Q Consensus 216 l~~g~~v~i~G~pN~GKSSL~N~L~~~~~ 244 (440)
+..|=.++|+|+.-+|||||++.|+|.-.
T Consensus 28 i~~Ge~~~IvG~sGsGKSTLl~~i~G~~~ 56 (204)
T cd03250 28 VPKGELVAIVGPVGSGKSSLLSALLGELE 56 (204)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHCCCCC
T ss_conf 76998999999999858999999818952
No 484
>PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional
Probab=94.09 E-value=0.031 Score=35.32 Aligned_cols=43 Identities=21% Similarity=0.356 Sum_probs=32.1
Q ss_pred HHHCCCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCCEEECCCCCCCCCEEEE
Q ss_conf 3202302431146631888999985520002345468721100012456835899
Q gi|254780809|r 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVK 270 (440)
Q Consensus 216 l~~g~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTTRD~i~~~~~i~g~~~~ 270 (440)
+..|-.++|+|+--+|||||++.|.|..+. . ++.+.++|.++.
T Consensus 34 i~~Ge~~~liG~NGaGKSTLl~~l~gl~~p----~--------~G~I~~~g~~i~ 76 (265)
T PRK10575 34 FPAGKVTGLIGHNGSGKSTLLKMLGRHQPP----S--------EGEILLDAQPLA 76 (265)
T ss_pred ECCCCEEEEECCCCCHHHHHHHHHHCCCCC----C--------CCEEEECCEECC
T ss_conf 879989999999998099999999568899----8--------738999976567
No 485
>KOG2484 consensus
Probab=94.08 E-value=0.029 Score=35.50 Aligned_cols=17 Identities=24% Similarity=0.335 Sum_probs=7.9
Q ss_pred HHHHHHCCEEECCCCCC
Q ss_conf 98503011020135898
Q gi|254780809|r 294 LEVENADLILLLKEINS 310 (440)
Q Consensus 294 ~~i~~aDlil~v~D~~~ 310 (440)
+.++.+|+||.|+|+.+
T Consensus 142 kvve~sDVVleVlDARD 158 (435)
T KOG2484 142 KVVEASDVVLEVLDARD 158 (435)
T ss_pred HHHHHHHEEEEEEECCC
T ss_conf 99865105788630558
No 486
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=94.08 E-value=0.056 Score=33.51 Aligned_cols=49 Identities=33% Similarity=0.410 Sum_probs=34.3
Q ss_pred HHHHCCCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCCEEECCCCCCCCCEEEEEEECC
Q ss_conf 4320230243114663188899998552000234546872110001245683589995081
Q gi|254780809|r 215 IIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTA 275 (440)
Q Consensus 215 ~l~~g~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTTRD~i~~~~~i~g~~~~l~DTa 275 (440)
.+.+|=.++|+|+..+|||||++.|.|-.+ +. ++.+.++|..+.+...+
T Consensus 24 ~i~~Ge~~~iiG~nGaGKSTLl~~l~gl~~----p~--------~G~i~i~g~~~~~~~~~ 72 (242)
T PRK11124 24 DCPQGETLVLLGPSGAGKSSLLRVLNLLEM----PR--------SGTLNIAGNHFDFSKTP 72 (242)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHHCCCC----CC--------CEEEEECCEEEECCCCC
T ss_conf 887998999999999719999999965888----88--------60899999996346788
No 487
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=94.08 E-value=0.038 Score=34.69 Aligned_cols=30 Identities=40% Similarity=0.552 Sum_probs=25.6
Q ss_pred HHHCCCEEEECCCCCCHHHHHHHHHCCHHC
Q ss_conf 320230243114663188899998552000
Q gi|254780809|r 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVA 245 (440)
Q Consensus 216 l~~g~~v~i~G~pN~GKSSL~N~L~~~~~a 245 (440)
+..|=-|+|+||.-+|||||+|.|.+-++.
T Consensus 28 i~~Ge~vaI~GpSGSGKSTLLniig~ld~p 57 (226)
T COG1136 28 IEAGEFVAIVGPSGSGKSTLLNLLGGLDKP 57 (226)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHHCCCCC
T ss_conf 749989999899999899999999646678
No 488
>PRK09580 sufC cysteine desulfurase ATPase component; Reviewed
Probab=94.08 E-value=0.036 Score=34.84 Aligned_cols=27 Identities=37% Similarity=0.553 Sum_probs=24.2
Q ss_pred HHHCCCEEEECCCCCCHHHHHHHHHCC
Q ss_conf 320230243114663188899998552
Q gi|254780809|r 216 IRNGYKIVILGHSNAGKSSLFNALAKK 242 (440)
Q Consensus 216 l~~g~~v~i~G~pN~GKSSL~N~L~~~ 242 (440)
+..|=.++|+|+.-+|||||+|.|+|.
T Consensus 24 i~~Gei~~iiG~nGaGKSTLl~~i~G~ 50 (248)
T PRK09580 24 VRPGEVHAIMGPNGSGKSTLSATLAGR 50 (248)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHHCC
T ss_conf 849979999999999999999998377
No 489
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=94.04 E-value=0.037 Score=34.74 Aligned_cols=44 Identities=30% Similarity=0.292 Sum_probs=33.1
Q ss_pred HHHHCCCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCCEEECCCCCCCCCEEEE
Q ss_conf 43202302431146631888999985520002345468721100012456835899
Q gi|254780809|r 215 IIRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVK 270 (440)
Q Consensus 215 ~l~~g~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTTRD~i~~~~~i~g~~~~ 270 (440)
.+..|=.++|+|+.-+|||||++.|+|-.. +. ++.+.++|.++.
T Consensus 29 ~i~~Ge~~~i~G~sGsGKSTLlk~i~gl~~----p~--------~G~I~~~g~~i~ 72 (225)
T PRK10247 29 SLRAGEFKLITGPSGCGKSTLLKIVASLIS----PT--------SGTLLFEGEDIS 72 (225)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHHCCCC----CC--------CCEEEECCEECC
T ss_conf 985996999999999999999999964668----88--------765999999977
No 490
>KOG0055 consensus
Probab=94.03 E-value=0.13 Score=30.89 Aligned_cols=29 Identities=34% Similarity=0.517 Sum_probs=24.8
Q ss_pred HHHHCCCEEEECCCCCCHHHHHHHHHCCH
Q ss_conf 43202302431146631888999985520
Q gi|254780809|r 215 IIRNGYKIVILGHSNAGKSSLFNALAKKD 243 (440)
Q Consensus 215 ~l~~g~~v~i~G~pN~GKSSL~N~L~~~~ 243 (440)
.+..|-.|+|+|+.-.||||++.-|.+-.
T Consensus 375 ~i~~G~~valVG~SGsGKST~i~LL~Rfy 403 (1228)
T KOG0055 375 KIPSGQTVALVGPSGSGKSTLIQLLARFY 403 (1228)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHHHHC
T ss_conf 82799889998899987999999999726
No 491
>COG0404 GcvT Glycine cleavage system T protein (aminomethyltransferase) [Amino acid transport and metabolism]
Probab=94.03 E-value=0.14 Score=30.71 Aligned_cols=82 Identities=18% Similarity=0.196 Sum_probs=50.2
Q ss_pred CCEEEEECCCHHHHHHHHHHHCCCC--CCCCEEEEEEEECCCCCEEEEEEEEEECCCCCCCCCCEEEEEECCCHHHHHHH
Q ss_conf 6169997273889999998716688--88753899887548986720699999567799887753999808987889999
Q gi|254780809|r 18 SAISIIRLSGPSCFQVCEFICKKKK--PFPRKASLRYFFGLDGRILDKGLLIVFPSPESFTGEDSAEFHVHGGIAVVNGI 95 (440)
Q Consensus 18 ~aiaviRiSG~~~~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~iD~~l~~~f~~P~SyTGEDvvEi~~HG~~~i~~~i 95 (440)
-..+.+-|.||+|.++++++..... ..|.. .+...-...+. + ++-+--|||||+=.||+|..-.+ ..+
T Consensus 146 ~~~~~lalqGPkAr~il~~~~~~~~~~~l~~~-~~~~~~i~g~~---~----~~i~R~gyTGE~G~Ei~~p~~~a--~~v 215 (379)
T COG0404 146 EDLAVLALQGPKAREVLAKLVDGDLVEALPFF-AFKEVTIGGGV---P----VRISRTGYTGELGFEIYVPAEDA--AAV 215 (379)
T ss_pred CCEEEEEEECCCHHHHHHHHCCCCCCCCCCCE-EEEEEEECCCC---E----EEEEECCCCCCCEEEEEECHHHH--HHH
T ss_conf 54899998786789999874465532358835-78887705773---4----99994663478758997368999--999
Q ss_pred HHHHHHH---HHHHHCC
Q ss_conf 9987544---3200000
Q gi|254780809|r 96 LEELAKM---PNLRLAN 109 (440)
Q Consensus 96 l~~l~~~---~g~r~A~ 109 (440)
.+.|... .|++|.-
T Consensus 216 w~aL~~aG~~~g~~P~G 232 (379)
T COG0404 216 WDALLEAGEKFGVKPCG 232 (379)
T ss_pred HHHHHHHHHHCCCEEEE
T ss_conf 99999720023855760
No 492
>KOG0082 consensus
Probab=94.03 E-value=0.1 Score=31.61 Aligned_cols=108 Identities=16% Similarity=0.310 Sum_probs=67.7
Q ss_pred CEEECCCCCCCCCEEEEEEECCHHCCCCHHHHHHHHHHHHHHHHHHCCEEECCCCCCHHHH-------------------
Q ss_conf 2110001245683589995081000241035666678889985030110201358985663-------------------
Q gi|254780809|r 254 TRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENADLILLLKEINSKKEI------------------- 314 (440)
Q Consensus 254 TRD~i~~~~~i~g~~~~l~DTaGir~t~d~IE~~GI~ra~~~i~~aDlil~v~D~~~~~~~------------------- 314 (440)
|..+++..+.+.+.+++++|..|-|.- + +|=...-+..+.|+|++..++-+..
T Consensus 182 T~GI~e~~F~~k~~~f~~~DvGGQRse-----R---rKWihcFe~v~aviF~vslSeYdq~l~ED~~~NRM~eS~~LF~s 253 (354)
T KOG0082 182 TTGIVEVEFTIKGLKFRMFDVGGQRSE-----R---KKWIHCFEDVTAVIFCVSLSEYDQVLEEDETTNRMHESLKLFES 253 (354)
T ss_pred CCCEEEEEEEECCCCEEEEECCCCHHH-----H---HHHHHHHCCCCEEEEEEEHHHHHHHCCCCCCHHHHHHHHHHHHH
T ss_conf 677458999867984489707976887-----6---33777516898799997643330010145410489999999999
Q ss_pred ----HHHCCCCCCCCCCCCCCCCCCCHHHHHH--HHHHHH-HHHHHHHHHHHHHHHHHCCCC
Q ss_conf ----4312898532222333446542000001--333323-235899999999963220358
Q gi|254780809|r 315 ----SFPKNIDFIFIGTKSDLYSTYTEEYDHL--ISSFTG-EGLEELINKIKSILSNKFKKL 369 (440)
Q Consensus 315 ----~~~~~~~~i~V~NK~Dl~~~~~~~~~~~--ISaktg-~Gi~~L~~~I~~~l~~~~~~~ 369 (440)
....+.++|+.+||.||...+....... -.--+| ...+...+.|...+.......
T Consensus 254 I~n~~~F~~tsiiLFLNK~DLFeEKi~~~~~~~~Fpdy~G~~~~~~a~~yI~~kF~~l~~~~ 315 (354)
T KOG0082 254 ICNNKWFANTSIILFLNKKDLFEEKIKKVPLTDCFPDYKGVNTYEEAAKYIRKKFEELNKNK 315 (354)
T ss_pred HHCCCCCCCCCEEEEEECHHHHHHHHCCCCHHHHCCCCCCCCCHHHHHHHHHHHHHHHHCCC
T ss_conf 96480322472799962388788886047345418578999875999999999999974155
No 493
>PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional
Probab=94.00 E-value=0.036 Score=34.87 Aligned_cols=43 Identities=26% Similarity=0.366 Sum_probs=32.7
Q ss_pred HHHCCCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCCEEECCCCCCCCCEEEE
Q ss_conf 3202302431146631888999985520002345468721100012456835899
Q gi|254780809|r 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVK 270 (440)
Q Consensus 216 l~~g~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTTRD~i~~~~~i~g~~~~ 270 (440)
+..|-.++|+||--+|||||++.++|--. +. ++.+.++|.++.
T Consensus 30 I~~Ge~~~iiGpNGaGKSTLlk~i~Gll~----p~--------~G~I~l~g~~i~ 72 (265)
T PRK10253 30 IPDGHFTAIIGPNGCGKSTLLRTLSRLMT----PA--------HGHVWLDGEHIQ 72 (265)
T ss_pred ECCCCEEEEECCCCCHHHHHHHHHHCCCC----CC--------CEEEEECCEECC
T ss_conf 85997999999988399999999974988----88--------529999999957
No 494
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=93.99 E-value=0.035 Score=34.90 Aligned_cols=42 Identities=33% Similarity=0.510 Sum_probs=31.5
Q ss_pred HHHCCCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCCEEECCCCCCCCCEEE
Q ss_conf 320230243114663188899998552000234546872110001245683589
Q gi|254780809|r 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLV 269 (440)
Q Consensus 216 l~~g~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTTRD~i~~~~~i~g~~~ 269 (440)
+..|=.++|+|+.-+|||||++.|+|.-. +. ++.+.++|.++
T Consensus 25 i~~Ge~~aivG~sGsGKSTLl~~l~G~~~----p~--------~G~i~i~g~~i 66 (178)
T cd03247 25 LKQGEKIALLGRSGSGKSTLLQLLTGDLK----PQ--------QGEITLDGVPV 66 (178)
T ss_pred ECCCCEEEEECCCCCHHHHHHHHHHHCCC----CC--------CCEEEECCEEH
T ss_conf 86999999999998759999999986176----67--------88699999988
No 495
>TIGR00763 lon ATP-dependent protease La; InterPro: IPR004815 Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes . They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence . Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases . Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base . The geometric orientations of the catalytic residues are similar between families, despite different protein folds . The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) , . Peptidases are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry. Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. This signature defines the bacterial and eukaryotic lon proteases, which are ATP-dependent serine peptidases belonging to the MEROPS peptidase family S16 (lon protease family, clan SF). This family of sequences does not include the archaeal lon homologs, IPR004663 from INTERPRO. In the eukaryotes the majority of the proteins are located in the mitochondrial matrix , . In yeast, Pim1, is located in the mitochondrial matrix, is required for mitochondrial function, is constitutively expressed but is increased after thermal stress, suggesting that Pim1 may play a role in the heat shock response .; GO: 0004176 ATP-dependent peptidase activity, 0005524 ATP binding, 0006510 ATP-dependent proteolysis.
Probab=93.96 E-value=0.035 Score=34.90 Aligned_cols=45 Identities=27% Similarity=0.304 Sum_probs=31.9
Q ss_pred HCCCHHHHHHHHHHH-----------HHHHHHHHCC-CEEEECCCCCCHHHHHHHHHC
Q ss_conf 010001121233322-----------3455432023-024311466318889999855
Q gi|254780809|r 196 ILFLKNDISSHISQG-----------KLGEIIRNGY-KIVILGHSNAGKSSLFNALAK 241 (440)
Q Consensus 196 i~~i~~~l~~ll~~~-----------~~~~~l~~g~-~v~i~G~pN~GKSSL~N~L~~ 241 (440)
+...++.+-+.+.-. +.. .=..|. =++++|||-|||+||=+.+..
T Consensus 416 L~~VK~RIlEYlAV~qllemrrkkkPkL~-~~~~GpqIlClvGPPGVGKTSlg~SIA~ 472 (941)
T TIGR00763 416 LKKVKERILEYLAVQQLLEMRRKKKPKLR-GKMKGPQILCLVGPPGVGKTSLGKSIAK 472 (941)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHCCCCCC-CCCCCCEEEEEECCCCCCHHHHHHHHHH
T ss_conf 87730341358889899987640364447-7888876787207269542227899999
No 496
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=93.94 E-value=0.04 Score=34.53 Aligned_cols=29 Identities=34% Similarity=0.513 Sum_probs=25.2
Q ss_pred HHHCCCEEEECCCCCCHHHHHHHHHCCHH
Q ss_conf 32023024311466318889999855200
Q gi|254780809|r 216 IRNGYKIVILGHSNAGKSSLFNALAKKDV 244 (440)
Q Consensus 216 l~~g~~v~i~G~pN~GKSSL~N~L~~~~~ 244 (440)
+..|-.++|+||..+|||||++.|+|...
T Consensus 23 i~~ge~~~l~G~NGsGKTTl~~~l~G~~~ 51 (144)
T cd03221 23 INPGDRIGLVGRNGAGKSTLLKLIAGELE 51 (144)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHHCCCC
T ss_conf 87999999998999849999999848988
No 497
>PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional
Probab=93.93 E-value=0.04 Score=34.54 Aligned_cols=27 Identities=37% Similarity=0.598 Sum_probs=24.1
Q ss_pred HHHCCCEEEECCCCCCHHHHHHHHHCC
Q ss_conf 320230243114663188899998552
Q gi|254780809|r 216 IRNGYKIVILGHSNAGKSSLFNALAKK 242 (440)
Q Consensus 216 l~~g~~v~i~G~pN~GKSSL~N~L~~~ 242 (440)
+..|=.++|+||--+|||||+++|+|-
T Consensus 27 i~~GE~~~iiGpNGaGKSTLlk~i~Gl 53 (262)
T PRK09984 27 IHHGEMVALLGPSGSGKSTLLRHLSGL 53 (262)
T ss_pred ECCCCEEEEECCCCCHHHHHHHHHHCC
T ss_conf 879989999989996099999999756
No 498
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=93.92 E-value=0.047 Score=34.03 Aligned_cols=42 Identities=24% Similarity=0.339 Sum_probs=32.1
Q ss_pred HHHCCCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCCEEECCCCCCCCCEEE
Q ss_conf 320230243114663188899998552000234546872110001245683589
Q gi|254780809|r 216 IRNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLV 269 (440)
Q Consensus 216 l~~g~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTTRD~i~~~~~i~g~~~ 269 (440)
+.+|=.++|+|+--+|||||++.|+|-... . ++.+.++|.++
T Consensus 24 i~~Gei~~iiG~nGaGKSTLlk~i~Gl~~p----~--------~G~I~~~g~~i 65 (211)
T cd03225 24 IKKGEFVLIVGPNGSGKSTLLRLLNGLLGP----T--------SGEVLVDGKDL 65 (211)
T ss_pred ECCCCEEEEECCCCCCHHHHHHHHHCCCCC----C--------CCCEEECCEEC
T ss_conf 849979999889999899999999646779----8--------88778999999
No 499
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=93.88 E-value=0.04 Score=34.52 Aligned_cols=29 Identities=34% Similarity=0.521 Sum_probs=25.3
Q ss_pred HHHCCCEEEECCCCCCHHHHHHHHHCCHH
Q ss_conf 32023024311466318889999855200
Q gi|254780809|r 216 IRNGYKIVILGHSNAGKSSLFNALAKKDV 244 (440)
Q Consensus 216 l~~g~~v~i~G~pN~GKSSL~N~L~~~~~ 244 (440)
+..|=-++|+|+.-+|||||+|.++|-..
T Consensus 24 i~~Ge~~~lvGpnGaGKSTLl~~i~Gl~~ 52 (255)
T PRK11248 24 LESGELLVVLGPSGCGKTTLLNLIAGFVP 52 (255)
T ss_pred ECCCCEEEEECCCCCHHHHHHHHHHCCCC
T ss_conf 86998999999998469999999975998
No 500
>TIGR00064 ftsY signal recognition particle-docking protein FtsY; InterPro: IPR004390 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain . The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyze ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarize the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site , , . The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis , , , , , . Proteins known to belong to this family are classified in several functional subfamilies depending on the substrate used (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This family includes the cell division ABC transporter and the periplasmic substrate-binding protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In Escherichia coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.; GO: 0005525 GTP binding.
Probab=93.87 E-value=0.2 Score=29.70 Aligned_cols=144 Identities=19% Similarity=0.243 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHH-HHHHHHHHHHCCCEEEECCCCCCHHH
Q ss_conf 45665677699888654443113544311233258888640100011212333-22345543202302431146631888
Q gi|254780809|r 156 SLYGQWIDKLTHIRSFIEADLDFSEEEDVQNFSSKEVLNDILFLKNDISSHIS-QGKLGEIIRNGYKIVILGHSNAGKSS 234 (440)
Q Consensus 156 ~~i~~lr~~L~~~~a~iEa~IDF~dEedi~~~~~~~~~~~i~~i~~~l~~ll~-~~~~~~~l~~g~~v~i~G~pN~GKSS 234 (440)
+.++.+++++..=.. .+++++.+...+.+.+.+......-..+.. ..+....-..+.-+.++|==-+||.|
T Consensus 26 ~i~~~l~~~~~~~~~--------~~~~~~~e~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~kp~Vil~VGVNG~GKTT 97 (284)
T TIGR00064 26 KIIEELKKELVGKKV--------KDEEKLKEILKEALKEILKEILDKDTLLDLEQIEELPEEKKPNVILFVGVNGVGKTT 97 (284)
T ss_pred HHHHHHHHHHCCCCC--------CCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCCCCCEEEEEEEEECCCHHH
T ss_conf 999998875403557--------707899999999999987411232113344334430147897799998440886010
Q ss_pred HHHHHHCCH-------------------------------HCCCCCCCC-CCEEECCCCCC------CCCEEEEEEECCH
Q ss_conf 999985520-------------------------------002345468-72110001245------6835899950810
Q gi|254780809|r 235 LFNALAKKD-------------------------------VAIVTDIPG-TTRDVLTIDLD------LEGYLVKISDTAG 276 (440)
Q Consensus 235 L~N~L~~~~-------------------------------~aIVs~~~G-TTRD~i~~~~~------i~g~~~~l~DTaG 276 (440)
=+=.|...= ..+|+..+| . |+=..-++ -.|+-+.|+||||
T Consensus 98 TIaKLA~~l~~~Gk~V~laAgDTFRAAA~EQL~~Wa~R~gv~vi~~~~gn~--DPAaV~fDAi~~Ak~~niDvvliDTAG 175 (284)
T TIGR00064 98 TIAKLANKLKKQGKSVLLAAGDTFRAAAIEQLEVWAKRLGVDVIKQKEGNA--DPAAVIFDAIQAAKARNIDVVLIDTAG 175 (284)
T ss_pred HHHHHHHHHHHCCCEEEEECCCHHHHHHHHHHHHHHHHHCCEEEECCCCCC--CCHHHHHHHHHHHHHCCCCEEEEECCC
T ss_conf 288999999874990899827524799999999989883875540788988--717899998999987499789973475
Q ss_pred -HCCCCHHHHH-HHHHHHHHHHHH---HCCEEECCCCC
Q ss_conf -0024103566-667888998503---01102013589
Q gi|254780809|r 277 -IRETDDIVEK-EGIKRTFLEVEN---ADLILLLKEIN 309 (440)
Q Consensus 277 -ir~t~d~IE~-~GI~ra~~~i~~---aDlil~v~D~~ 309 (440)
++.-.|.++. .=|.|-.+.... -|.+|+|.|++
T Consensus 176 RLqnk~NLm~EL~KI~RV~~k~~~~~aP~e~lLVlDAt 213 (284)
T TIGR00064 176 RLQNKVNLMDELKKIKRVIKKVDPVDAPDEVLLVLDAT 213 (284)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEHHH
T ss_conf 45466203999999999873210257875575422022
Done!