HHsearch alignment for GI: 254780809 and conserved domain: pfam04670
>pfam04670 Gtr1_RagA Gtr1/RagA G protein conserved region. GTR1 was first identified in S. cerevisiae as a suppressor of a mutation in RCC1. Biochemical analysis revealed that Gtr1 is in fact a G protein of the Ras family. The RagA/B proteins are the human homologues of Gtr1. Included in this family is the human Rag C, a novel protein that has been shown to interact with RagA/B.
Probab=97.92 E-value=2.7e-05 Score=56.57 Aligned_cols=113 Identities=19% Similarity=0.229 Sum_probs=74.3
Q ss_pred CEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCCEEECCCCCCC-CCEEEEEEECCHHCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 02431146631888999985520002345468721100012456-83589995081000241035666678889985030
Q gi|254780809|r 221 KIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDL-EGYLVKISDTAGIRETDDIVEKEGIKRTFLEVENA 299 (440)
Q Consensus 221 ~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTTRD~i~~~~~i-~g~~~~l~DTaGir~t~d~IE~~GI~ra~~~i~~a 299 (440)
T Consensus 1 KiLLMG~~~sGKTSi~~vIF~~~~p~dT~~L~~T~~ve~~~v~~~~~l~l~iwD~pGq~~---f~e~~~~~~~e~if~~v 77 (230)
T pfam04670 1 KVLLMGLRGSGKSSMRSIIFSNYSPRDTLRLGATIDVEQSHVRFLGNLTLNLWDCPGQDD---FMENYLTRQKEHIFSNV 77 (230)
T ss_pred CEEEECCCCCCHHHHHHHHHCCCCHHHHCCCCCCCCEEEEEEECCCCCEEEEEECCCCHH---HHHHHCCCCHHHHHHCC
T ss_conf 978756899987776999867998214120257777677877416873689997698353---54412002235476447
Q ss_pred CCEEECCCCCCHHHHH--------------HHCCCCCCCCCCCCCCCCCCC
Q ss_conf 1102013589856634--------------312898532222333446542
Q gi|254780809|r 300 DLILLLKEINSKKEIS--------------FPKNIDFIFIGTKSDLYSTYT 336 (440)
Q Consensus 300 Dlil~v~D~~~~~~~~--------------~~~~~~~i~V~NK~Dl~~~~~ 336 (440)
T Consensus 78 ~~lIyV~D~q~~~~~~~l~~~~~~l~~~~~~sp~~~v~vfiHK~D~l~~d~ 128 (230)
T pfam04670 78 GVLIYVFDVESREYEEDLATLVKIIEALYQYSPNAKVFVLIHKMDLLSEDE 128 (230)
T ss_pred CEEEEEEECCCCCHHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCCCHHH
T ss_conf 889999968886099999999999999998399988999996035888667