HHsearch alignment for GI: 254780809 and conserved domain: pfam08477

>pfam08477 Miro Miro-like protein. Mitochondrial Rho proteins (Miro-1 and Miro-2), are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (pfam00036), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis.
Probab=99.01  E-value=1.2e-09  Score=86.85  Aligned_cols=102  Identities=31%  Similarity=0.491  Sum_probs=69.3

Q ss_pred             CEEEECCCCCCHHHHHHHHHCCHHC--CCCCCCCCCEEECCCCCCCCCEEEEEEECCHHCCCCHHHHHHHHHHHHHHHHH
Q ss_conf             0243114663188899998552000--23454687211000124568358999508100024103566667888998503
Q gi|254780809|r  221 KIVILGHSNAGKSSLFNALAKKDVA--IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN  298 (440)
Q Consensus       221 ~v~i~G~pN~GKSSL~N~L~~~~~a--IVs~~~GTTRD~i~~~~~i~g~~~~l~DTaGir~t~d~IE~~GI~ra~~~i~~  298 (440)
T Consensus         1 KivvvG~~~vGKTSLi~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~--------~~~~~~~~~   72 (118)
T pfam08477         1 KVVVIGDKGSGKSSLLSQLVGGEFPPEIPEEIQGDTLAVDTLEVDGDTELLHIWDFGGREELK--------FEHIIFMKT   72 (118)
T ss_pred             CEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEEEECCCEEEEEEEECCCCHHHH--------HHHHHHCCC
T ss_conf             999999899789999999983988876667877776888999999928999999899967776--------666542258


Q ss_pred             HCCEEECCCCCCHHHHH----------H----HCCCCCCCCCCCCC
Q ss_conf             01102013589856634----------3----12898532222333
Q gi|254780809|r  299 ADLILLLKEINSKKEIS----------F----PKNIDFIFIGTKSD  330 (440)
Q Consensus       299 aDlil~v~D~~~~~~~~----------~----~~~~~~i~V~NK~D  330 (440)
T Consensus        73 ~d~~ilvydit~~~Sf~~~~~~~~~i~~~~~~~~~~piilVGnK~D  118 (118)
T pfam08477        73 ADAILLVYDLTDRESLNRVSRLIAWLPHLRKLGKKIPVILVGNKFD  118 (118)
T ss_pred             CCEEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCC
T ss_conf             7467899979987899999999999999982099998899996859