HHsearch alignment for GI: 254780809 and conserved domain: pfam08477
>pfam08477 Miro Miro-like protein. Mitochondrial Rho proteins (Miro-1 and Miro-2), are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (pfam00036), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis.
Probab=99.01 E-value=1.2e-09 Score=86.85 Aligned_cols=102 Identities=31% Similarity=0.491 Sum_probs=69.3
Q ss_pred CEEEECCCCCCHHHHHHHHHCCHHC--CCCCCCCCCEEECCCCCCCCCEEEEEEECCHHCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 0243114663188899998552000--23454687211000124568358999508100024103566667888998503
Q gi|254780809|r 221 KIVILGHSNAGKSSLFNALAKKDVA--IVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEVEN 298 (440)
Q Consensus 221 ~v~i~G~pN~GKSSL~N~L~~~~~a--IVs~~~GTTRD~i~~~~~i~g~~~~l~DTaGir~t~d~IE~~GI~ra~~~i~~ 298 (440)
T Consensus 1 KivvvG~~~vGKTSLi~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~Dt~g~~~~~--------~~~~~~~~~ 72 (118)
T pfam08477 1 KVVVIGDKGSGKSSLLSQLVGGEFPPEIPEEIQGDTLAVDTLEVDGDTELLHIWDFGGREELK--------FEHIIFMKT 72 (118)
T ss_pred CEEEECCCCCCHHHHHHHHHHCCCCCCCCCCCCCCEEEEEEEEECCCEEEEEEEECCCCHHHH--------HHHHHHCCC
T ss_conf 999999899789999999983988876667877776888999999928999999899967776--------666542258
Q ss_pred HCCEEECCCCCCHHHHH----------H----HCCCCCCCCCCCCC
Q ss_conf 01102013589856634----------3----12898532222333
Q gi|254780809|r 299 ADLILLLKEINSKKEIS----------F----PKNIDFIFIGTKSD 330 (440)
Q Consensus 299 aDlil~v~D~~~~~~~~----------~----~~~~~~i~V~NK~D 330 (440)
T Consensus 73 ~d~~ilvydit~~~Sf~~~~~~~~~i~~~~~~~~~~piilVGnK~D 118 (118)
T pfam08477 73 ADAILLVYDLTDRESLNRVSRLIAWLPHLRKLGKKIPVILVGNKFD 118 (118)
T ss_pred CCEEEEEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCC
T ss_conf 7467899979987899999999999999982099998899996859