HHsearch alignment for GI: 254780809 and conserved domain: smart00053
>smart00053 DYNc Dynamin, GTPase. Large GTPases that mediate vesicle trafficking. Dynamin participates in the endocytic uptake of receptors, associated ligands, and plasma membrane following an exocytic event.
Probab=97.64 E-value=0.00023 Score=50.08 Aligned_cols=118 Identities=22% Similarity=0.251 Sum_probs=67.5
Q ss_pred HCCCEEEECCCCCCHHHHHHHHHCCHH-----CCCCCCCC----------------------------------------
Q ss_conf 023024311466318889999855200-----02345468----------------------------------------
Q gi|254780809|r 218 NGYKIVILGHSNAGKSSLFNALAKKDV-----AIVTDIPG---------------------------------------- 252 (440)
Q Consensus 218 ~g~~v~i~G~pN~GKSSL~N~L~~~~~-----aIVs~~~G---------------------------------------- 252 (440)
T Consensus 25 ~LPqiVVvGdQSsGKSSvLEaitGi~FlPr~~g~cTR~p~~i~l~~~~~~~~~~~~~~~~~~~~~~~v~~~i~~~~~~~~ 104 (240)
T smart00053 25 DLPQIAVVGGQSAGKSSVLENFVGRDFLPRGSGIVTRRPLILQLINSSTEYAEFLHCKGKKFTDFDEVRNEIEAETDRVT 104 (240)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHCCCCCCCCCCCEECCEEEEEEECCCCCCEEEEECCCCCCCCHHHHHHHHHHHHHHHC
T ss_conf 89848998887875899999987887555689727644069997338865124774378634898999999999887532
Q ss_pred -----CCEEECCCCCCCCC-EEEEEEECCHHCCC--C---HHHHHHHHHHHHHHHHHHC-CEEECCCCCCH----HHHHH
Q ss_conf -----72110001245683-58999508100024--1---0356666788899850301-10201358985----66343
Q gi|254780809|r 253 -----TTRDVLTIDLDLEG-YLVKISDTAGIRET--D---DIVEKEGIKRTFLEVENAD-LILLLKEINSK----KEISF 316 (440)
Q Consensus 253 -----TTRD~i~~~~~i~g-~~~~l~DTaGir~t--~---d~IE~~GI~ra~~~i~~aD-lil~v~D~~~~----~~~~~ 316 (440)
T Consensus 105 g~~~~~s~~~l~lei~gP~~p~LTlvDLPGl~~~~~~~q~~~~~~~v~~lv~~Yi~~p~tIILaVv~a~~D~anq~~l~l 184 (240)
T smart00053 105 GTNKGISPVPINLRVYSPHVLNLTLIDLPGITKVAVGDQPPDIEEQIKDMIKQFISKEECLILAVTPANVDLANSDALKL 184 (240)
T ss_pred CCCCCCCCCCEEEEEECCCCCCCEEECCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCHHHHHHHHH
T ss_conf 67887678855999947999885441475412467899856799999999999847988069998407856766199999
Q ss_pred -----HCCCCCCCCCCCCCCCCCC
Q ss_conf -----1289853222233344654
Q gi|254780809|r 317 -----PKNIDFIFIGTKSDLYSTY 335 (440)
Q Consensus 317 -----~~~~~~i~V~NK~Dl~~~~ 335 (440)
T Consensus 185 Ar~~Dp~g~RTiGVlTKpDl~~~g 208 (240)
T smart00053 185 AKEVDPQGERTIGVITKLDLMDEG 208 (240)
T ss_pred HHHHCCCCCEEEEEECCCCCCCCC
T ss_conf 997199998289997353345777