HHsearch alignment for GI: 254780809 and conserved domain: smart00175

>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.44  E-value=5.8e-13  Score=109.76  Aligned_cols=134  Identities=25%  Similarity=0.300  Sum_probs=92.1

Q ss_pred             CCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCC-EEECCCCCCCCCE--EEEEEECCHHCCCCHHHHHHHHHHHHHHH
Q ss_conf             30243114663188899998552000234546872-1100012456835--89995081000241035666678889985
Q gi|254780809|r  220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT-RDVLTIDLDLEGY--LVKISDTAGIRETDDIVEKEGIKRTFLEV  296 (440)
Q Consensus       220 ~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTT-RD~i~~~~~i~g~--~~~l~DTaGir~t~d~IE~~GI~ra~~~i  296 (440)
T Consensus         1 ~Ki~vvG~~~vGKTsli~r~~~~~f--~~~~~~Ti~~~~~~~~i~~~~~~~~l~iwDt~G~e~~----~----~l~~~~~   70 (164)
T smart00175        1 FKIILIGDSGVGKSSLLSRFTDGKF--SEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERF----R----SITSSYY   70 (164)
T ss_pred             CEEEEECCCCCCHHHHHHHHHHCCC--CCCCCCCCCEEEEEEEEEECCEEEEEEEEECCCCHHH----H----HHHHHHH
T ss_conf             9899999899779999999941999--9986884566667799999999999999967994466----4----7799883


Q ss_pred             HHHCCEEECCCCCCHHHHHH------------HCCCCCCCCCCCCCCCCCCCHH-------------HHHHHHHHHHHHH
Q ss_conf             03011020135898566343------------1289853222233344654200-------------0001333323235
Q gi|254780809|r  297 ENADLILLLKEINSKKEISF------------PKNIDFIFIGTKSDLYSTYTEE-------------YDHLISSFTGEGL  351 (440)
Q Consensus       297 ~~aDlil~v~D~~~~~~~~~------------~~~~~~i~V~NK~Dl~~~~~~~-------------~~~~ISaktg~Gi  351 (440)
T Consensus        71 ~~~~~~ilvfdi~~~~Sf~~i~~w~~~i~~~~~~~~piilvgnK~Dl~~~r~V~~~e~~~~a~~~~~~~~e~SAk~~~~v  150 (164)
T smart00175       71 RGAVGALLVYDITNRESFENLKNWLKELREYADPNVVIMLVGNKSDLEDQRQVSREEAEAFAEEHGLPFFETSAKTNTNV  150 (164)
T ss_pred             CCCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCHHHHCCCCHHHHHHHHHHCCCEEEEECCCCCCCH
T ss_conf             36653688436899899999999999999867999825511645685651879999999999984997999831669088


Q ss_pred             HHHHHHHHHHHH
Q ss_conf             899999999963
Q gi|254780809|r  352 EELINKIKSILS  363 (440)
Q Consensus       352 ~~L~~~I~~~l~  363 (440)
T Consensus       151 ~e~F~~l~~~i~  162 (164)
T smart00175      151 EEAFEELAREIL  162 (164)
T ss_pred             HHHHHHHHHHHH
T ss_conf             999999999997