HHsearch alignment for GI: 254780809 and conserved domain: smart00175
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=99.44 E-value=5.8e-13 Score=109.76 Aligned_cols=134 Identities=25% Similarity=0.300 Sum_probs=92.1
Q ss_pred CCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCC-EEECCCCCCCCCE--EEEEEECCHHCCCCHHHHHHHHHHHHHHH
Q ss_conf 30243114663188899998552000234546872-1100012456835--89995081000241035666678889985
Q gi|254780809|r 220 YKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTT-RDVLTIDLDLEGY--LVKISDTAGIRETDDIVEKEGIKRTFLEV 296 (440)
Q Consensus 220 ~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTT-RD~i~~~~~i~g~--~~~l~DTaGir~t~d~IE~~GI~ra~~~i 296 (440)
T Consensus 1 ~Ki~vvG~~~vGKTsli~r~~~~~f--~~~~~~Ti~~~~~~~~i~~~~~~~~l~iwDt~G~e~~----~----~l~~~~~ 70 (164)
T smart00175 1 FKIILIGDSGVGKSSLLSRFTDGKF--SEQYKSTIGVDFKTKTIEVDGKRVKLQIWDTAGQERF----R----SITSSYY 70 (164)
T ss_pred CEEEEECCCCCCHHHHHHHHHHCCC--CCCCCCCCCEEEEEEEEEECCEEEEEEEEECCCCHHH----H----HHHHHHH
T ss_conf 9899999899779999999941999--9986884566667799999999999999967994466----4----7799883
Q ss_pred HHHCCEEECCCCCCHHHHHH------------HCCCCCCCCCCCCCCCCCCCHH-------------HHHHHHHHHHHHH
Q ss_conf 03011020135898566343------------1289853222233344654200-------------0001333323235
Q gi|254780809|r 297 ENADLILLLKEINSKKEISF------------PKNIDFIFIGTKSDLYSTYTEE-------------YDHLISSFTGEGL 351 (440)
Q Consensus 297 ~~aDlil~v~D~~~~~~~~~------------~~~~~~i~V~NK~Dl~~~~~~~-------------~~~~ISaktg~Gi 351 (440)
T Consensus 71 ~~~~~~ilvfdi~~~~Sf~~i~~w~~~i~~~~~~~~piilvgnK~Dl~~~r~V~~~e~~~~a~~~~~~~~e~SAk~~~~v 150 (164)
T smart00175 71 RGAVGALLVYDITNRESFENLKNWLKELREYADPNVVIMLVGNKSDLEDQRQVSREEAEAFAEEHGLPFFETSAKTNTNV 150 (164)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHHHHHHHHHCCCCCCEEECCCCCCHHHHCCCCHHHHHHHHHHCCCEEEEECCCCCCCH
T ss_conf 36653688436899899999999999999867999825511645685651879999999999984997999831669088
Q ss_pred HHHHHHHHHHHH
Q ss_conf 899999999963
Q gi|254780809|r 352 EELINKIKSILS 363 (440)
Q Consensus 352 ~~L~~~I~~~l~ 363 (440)
T Consensus 151 ~e~F~~l~~~i~ 162 (164)
T smart00175 151 EEAFEELAREIL 162 (164)
T ss_pred HHHHHHHHHHHH
T ss_conf 999999999997