HHsearch alignment for GI: 254780809 and conserved domain: smart00176
>smart00176 RAN Ran (Ras-related nuclear proteins) /TC4 subfamily of small GTPases. Ran is involved in the active transport of proteins through nuclear pores.
Probab=99.13 E-value=2.1e-10 Score=91.92 Aligned_cols=130 Identities=14% Similarity=0.125 Sum_probs=88.1
Q ss_pred ECCCCCCHHHHHHHHHCCHHCCCCCCCCCC-EEECCCCCCCCC--EEEEEEECCHHCCCCHHHHHHHHHHHHHHHHHHCC
Q ss_conf 114663188899998552000234546872-110001245683--58999508100024103566667888998503011
Q gi|254780809|r 225 LGHSNAGKSSLFNALAKKDVAIVTDIPGTT-RDVLTIDLDLEG--YLVKISDTAGIRETDDIVEKEGIKRTFLEVENADL 301 (440)
Q Consensus 225 ~G~pN~GKSSL~N~L~~~~~aIVs~~~GTT-RD~i~~~~~i~g--~~~~l~DTaGir~t~d~IE~~GI~ra~~~i~~aDl 301 (440)
T Consensus 1 vGD~gVGKTsli~R~~~~~F--~~~y~pTiGvd~~~~~~~~~~~~i~l~iWDTAGqE~f~--------sl~~~yyr~a~~ 70 (200)
T smart00176 1 VGDGGTGKTTFVKRHLTGEF--EKKYVATLGVEVHPLVFHTNRGPIRFNVWDTAGQEKFG--------GLRDGYYIQGQC 70 (200)
T ss_pred CCCCCCCHHHHHHHHHCCCC--CCCCCCCEEEEEEEEEEEECCEEEEEEEEECCCCCCCC--------CCCHHHCCCCCE
T ss_conf 98988789999999940999--99978871489899999989989999999898870001--------102655057878
Q ss_pred EEECCCCCCHHHHH-----------HHCCCCCCCCCCCCCCCCCCCHHH-----------HHHHHHHHHHHHHHHHHHHH
Q ss_conf 02013589856634-----------312898532222333446542000-----------00133332323589999999
Q gi|254780809|r 302 ILLLKEINSKKEIS-----------FPKNIDFIFIGTKSDLYSTYTEEY-----------DHLISSFTGEGLEELINKIK 359 (440)
Q Consensus 302 il~v~D~~~~~~~~-----------~~~~~~~i~V~NK~Dl~~~~~~~~-----------~~~ISaktg~Gi~~L~~~I~ 359 (440)
T Consensus 71 ~IlvfDvt~~~SF~~l~~W~~~l~~~~~~ipiiLvGNK~DL~~r~V~~e~~~~a~~~~~~y~EtSAKt~~Nv~e~F~~La 150 (200)
T smart00176 71 AIIMFDVTARVTYKNVPNWHRDLVRVCENIPIVLCGNKVDVKDRKVKAKSITFHRKKNLQYYDISAKSNYNFEKPFLWLA 150 (200)
T ss_pred EEEEEECCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCCCCHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHH
T ss_conf 89996358778999899999999985799988999988757404365999999998799789830046969799999999
Q ss_pred HHHHH
Q ss_conf 99632
Q gi|254780809|r 360 SILSN 364 (440)
Q Consensus 360 ~~l~~ 364 (440)
T Consensus 151 r~L~~ 155 (200)
T smart00176 151 RKLIG 155 (200)
T ss_pred HHHHC
T ss_conf 99838