HHsearch alignment for GI: 254780809 and conserved domain: smart00177
>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.52 E-value=5.2e-14 Score=117.02 Aligned_cols=135 Identities=19% Similarity=0.254 Sum_probs=97.1
Q ss_pred HHCCCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCCEEECCCCCCCCCEEEEEEECCHHCCCCHHHHHHHHHHHHHHH
Q ss_conf 20230243114663188899998552000234546872110001245683589995081000241035666678889985
Q gi|254780809|r 217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV 296 (440)
Q Consensus 217 ~~g~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTTRD~i~~~~~i~g~~~~l~DTaGir~t~d~IE~~GI~ra~~~i 296 (440)
T Consensus 11 kk~~kililG~~~~GKTsil~~l~~~~~--~~~~p--Tvg~~~~~~~~~~~~l~iwD~~Gqe~~r--------~l~~~Yy 78 (175)
T smart00177 11 NKEMRILMVGLDAAGKTTILYKLKLGES--VTTIP--TIGFNVETVTYKNISFTVWDVGGQDKIR--------PLWRHYY 78 (175)
T ss_pred CCEEEEEEECCCCCCHHHHHHHHHCCCC--CCCCC--CCCCEEEEEEECCEEEEEEECCCCCCCC--------HHHHHHC
T ss_conf 8889999998899998999999965997--77579--7881079999898999999899985455--------3677755
Q ss_pred HHHCCEEECCCCCCHHHHH-------------HHCCCCCCCCCCCCCCCCCCCHH----------------HHHHHHHHH
Q ss_conf 0301102013589856634-------------31289853222233344654200----------------000133332
Q gi|254780809|r 297 ENADLILLLKEINSKKEIS-------------FPKNIDFIFIGTKSDLYSTYTEE----------------YDHLISSFT 347 (440)
Q Consensus 297 ~~aDlil~v~D~~~~~~~~-------------~~~~~~~i~V~NK~Dl~~~~~~~----------------~~~~ISakt 347 (440)
T Consensus 79 ~~a~~iIfVvD~sd~~~~~~~~~~l~~~l~~~~~~~~piLil~NK~Dl~~~~~~~ei~~~l~l~~~~~~~~~i~~~SA~t 158 (175)
T smart00177 79 TNTQGLIFVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDAMKAAEITEKLGLHSIRDRNWYIQPTCATS 158 (175)
T ss_pred CCCCEEEEEEECCCHHHHHHHHHHHHHHHCCHHHCCCEEEEEEECCCCCCCCCHHHHHHHHCHHHHCCCCEEEEEEECCC
T ss_conf 77618999986687789999999999996315316986999984566767889999999968665407975999826878
Q ss_pred HHHHHHHHHHHHHHHH
Q ss_conf 3235899999999963
Q gi|254780809|r 348 GEGLEELINKIKSILS 363 (440)
Q Consensus 348 g~Gi~~L~~~I~~~l~ 363 (440)
T Consensus 159 G~GI~e~f~wL~~~ik 174 (175)
T smart00177 159 GDGLYEGLTWLSNNLK 174 (175)
T ss_pred CCCHHHHHHHHHHHHC
T ss_conf 9698999999999844