HHsearch alignment for GI: 254780809 and conserved domain: smart00177

>smart00177 ARF ARF-like small GTPases; ARF, ADP-ribosylation factor. Ras homologues involved in vesicular transport. Activator of phospholipase D isoforms. Unlike Ras proteins they lack cysteine residues at their C-termini and therefore are unlikely to be prenylated. ARFs are N-terminally myristoylated. Contains ATP/GTP-binding motif (P-loop).
Probab=99.52  E-value=5.2e-14  Score=117.02  Aligned_cols=135  Identities=19%  Similarity=0.254  Sum_probs=97.1

Q ss_pred             HHCCCEEEECCCCCCHHHHHHHHHCCHHCCCCCCCCCCEEECCCCCCCCCEEEEEEECCHHCCCCHHHHHHHHHHHHHHH
Q ss_conf             20230243114663188899998552000234546872110001245683589995081000241035666678889985
Q gi|254780809|r  217 RNGYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIRETDDIVEKEGIKRTFLEV  296 (440)
Q Consensus       217 ~~g~~v~i~G~pN~GKSSL~N~L~~~~~aIVs~~~GTTRD~i~~~~~i~g~~~~l~DTaGir~t~d~IE~~GI~ra~~~i  296 (440)
T Consensus        11 kk~~kililG~~~~GKTsil~~l~~~~~--~~~~p--Tvg~~~~~~~~~~~~l~iwD~~Gqe~~r--------~l~~~Yy   78 (175)
T smart00177       11 NKEMRILMVGLDAAGKTTILYKLKLGES--VTTIP--TIGFNVETVTYKNISFTVWDVGGQDKIR--------PLWRHYY   78 (175)
T ss_pred             CCEEEEEEECCCCCCHHHHHHHHHCCCC--CCCCC--CCCCEEEEEEECCEEEEEEECCCCCCCC--------HHHHHHC
T ss_conf             8889999998899998999999965997--77579--7881079999898999999899985455--------3677755


Q ss_pred             HHHCCEEECCCCCCHHHHH-------------HHCCCCCCCCCCCCCCCCCCCHH----------------HHHHHHHHH
Q ss_conf             0301102013589856634-------------31289853222233344654200----------------000133332
Q gi|254780809|r  297 ENADLILLLKEINSKKEIS-------------FPKNIDFIFIGTKSDLYSTYTEE----------------YDHLISSFT  347 (440)
Q Consensus       297 ~~aDlil~v~D~~~~~~~~-------------~~~~~~~i~V~NK~Dl~~~~~~~----------------~~~~ISakt  347 (440)
T Consensus        79 ~~a~~iIfVvD~sd~~~~~~~~~~l~~~l~~~~~~~~piLil~NK~Dl~~~~~~~ei~~~l~l~~~~~~~~~i~~~SA~t  158 (175)
T smart00177       79 TNTQGLIFVVDSNDRDRIDEAREELHRMLNEDELRDAVILVFANKQDLPDAMKAAEITEKLGLHSIRDRNWYIQPTCATS  158 (175)
T ss_pred             CCCCEEEEEEECCCHHHHHHHHHHHHHHHCCHHHCCCEEEEEEECCCCCCCCCHHHHHHHHCHHHHCCCCEEEEEEECCC
T ss_conf             77618999986687789999999999996315316986999984566767889999999968665407975999826878


Q ss_pred             HHHHHHHHHHHHHHHH
Q ss_conf             3235899999999963
Q gi|254780809|r  348 GEGLEELINKIKSILS  363 (440)
Q Consensus       348 g~Gi~~L~~~I~~~l~  363 (440)
T Consensus       159 G~GI~e~f~wL~~~ik  174 (175)
T smart00177      159 GDGLYEGLTWLSNNLK  174 (175)
T ss_pred             CCCHHHHHHHHHHHHC
T ss_conf             9698999999999844