RPSBLAST alignment for GI: 254780809 and conserved domain: cd04164
>gnl|CDD|133364 cd04164, trmE, TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance. Length = 157
Score = 181 bits (463), Expect = 2e-46
Identities = 64/156 (41%), Positives = 90/156 (57%), Gaps = 12/156 (7%)
Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278
G K+VI+G N GKSSL NALA +D AIV+DI GTTRDV+ +D+ G V++ DTAGIR
Sbjct: 1 GIKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIGGIPVRLIDTAGIR 60
Query: 279 ETDDIVEKEGIKRTFLEVENADLILLL----KEINS--KKEISFPKNIDFIFIGTKSDLY 332
ET+D +EK GI+R +E ADL+L + + ++ + + P + I + KSDL
Sbjct: 61 ETEDEIEKIGIERAREAIEEADLVLFVIDASRGLDEEDLEILELPADKPIIVVLNKSDLL 120
Query: 333 STYTEEYD------HLISSFTGEGLEELINKIKSIL 362
IS+ TGEGL+EL + +
Sbjct: 121 PDSELLSLLAGKPIIAISAKTGEGLDELKEALLELA 156