RPSBLAST alignment for GI: 254780809 and conserved domain: cd04164

>gnl|CDD|133364 cd04164, trmE, TrmE (MnmE, ThdF, MSS1) is a 3-domain protein found in bacteria and eukaryotes. It controls modification of the uridine at the wobble position (U34) of tRNAs that read codons ending with A or G in the mixed codon family boxes. TrmE contains a GTPase domain that forms a canonical Ras-like fold. It functions a molecular switch GTPase, and apparently uses a conformational change associated with GTP hydrolysis to promote the tRNA modification reaction, in which the conserved cysteine in the C-terminal domain is thought to function as a catalytic residue. In bacteria that are able to survive in extremely low pH conditions, TrmE regulates glutamate-dependent acid resistance. Length = 157
 Score =  181 bits (463), Expect = 2e-46
 Identities = 64/156 (41%), Positives = 90/156 (57%), Gaps = 12/156 (7%)

Query: 219 GYKIVILGHSNAGKSSLFNALAKKDVAIVTDIPGTTRDVLTIDLDLEGYLVKISDTAGIR 278
           G K+VI+G  N GKSSL NALA +D AIV+DI GTTRDV+   +D+ G  V++ DTAGIR
Sbjct: 1   GIKVVIVGKPNVGKSSLLNALAGRDRAIVSDIAGTTRDVIEESIDIGGIPVRLIDTAGIR 60

Query: 279 ETDDIVEKEGIKRTFLEVENADLILLL----KEINS--KKEISFPKNIDFIFIGTKSDLY 332
           ET+D +EK GI+R    +E ADL+L +    + ++    + +  P +   I +  KSDL 
Sbjct: 61  ETEDEIEKIGIERAREAIEEADLVLFVIDASRGLDEEDLEILELPADKPIIVVLNKSDLL 120

Query: 333 STYTEEYD------HLISSFTGEGLEELINKIKSIL 362
                           IS+ TGEGL+EL   +  + 
Sbjct: 121 PDSELLSLLAGKPIIAISAKTGEGLDELKEALLELA 156