HHsearch alignment for GI: 254780810 and conserved domain: CHL00060
>CHL00060 atpB ATP synthase CF1 beta subunit.
Probab=100.00 E-value=0 Score=560.51 Aligned_cols=321 Identities=16% Similarity=0.166 Sum_probs=298.7
Q ss_pred CCCEEECCCCCCCCCCCCCEEEEEEEECCCCCCCCCCEEECCCCCCCHHHHHCCCCHHHCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 56046010000122125987999886246888763000222255688788512443000200011223432477865321
Q gi|254780810|r 80 DDIYVSPSQIKSFSLKTGDTVEGSIRAPREGERYFALLKVNAINFDVPERVRNKIHFDNLTPLYPDKRFNMELNNPENKD 159 (423)
Q Consensus 80 ~DiyVs~slir~f~Lr~GD~V~g~~r~~~~~~~~~~L~rV~~vnG~~~d~~~~~~~f~~l~p~~p~~~i~le~~~~~p~~ 159 (423)
T Consensus 61 ~~~Vr~i~l~~t~GL~~G~~V~~tg~~l~VPVG~~lLGRV~d~lG~PiDg~gpi~~~~~~pi~~~aP~~~~r~~~~e~le 140 (480)
T CHL00060 61 NNRVRAVAMSATDGLMRGMEVIDTGAPLSVPVGGATLGRIFNVLGEPVDNLGPVDTRTTSPIHRSAPAFIQLDTKLSIFE 140 (480)
T ss_pred CCEEEEEECCCCCCCCCCCEEEECCCCEEEEECHHHCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHH
T ss_conf 99799996568778899899995899549872853316878888883578899876650325678998555567786110
Q ss_pred HHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHH-------------
Q ss_conf 3688899886551023122204877878999999999986118864699995087878999999840-------------
Q gi|254780810|r 160 ISSRVIDLIAPIGKGQRSLIVAPPRTGKTILLQNIAHSIKKNHPECYLIVLLIDERPEEVTDMQRSV------------- 226 (423)
Q Consensus 160 ~~~~~id~~~pig~gqr~~i~~~~~~gkt~ll~~ia~~~~~~~~~v~~i~~ligEr~~ev~e~~~~~------------- 226 (423)
T Consensus 141 TGIkaID~l~pigkGQRigIfggaGvGKTvLl~eli~niak~~~~-v~V~a~IGER~RE~~e~~~e~~e~gvl~~~~~~~ 219 (480)
T CHL00060 141 TGIKVVDLLAPYRRGGKIGLFGGAGVGKTVLIMELINNIAKAHGG-VSVFGGVGERTREGNDLYMEMKESGVINEQNIAE 219 (480)
T ss_pred CCHHHHHCCCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCC-EEEEEEECCCCHHHHHHHHHHHHCCCCCCCCCCC
T ss_conf 270444312540036688765689988789999999612003798-8999996677367999999998718553355443
Q ss_pred -CCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCC-CCEEEEEECHHHHHHHHHCCCCCCCCCCC-CCCCHHHHHHCHHH
Q ss_conf -3427823667888899999999999999999779-92899981638987762001366777677-75202466504687
Q gi|254780810|r 227 -QGEVISSTFDESAARHVQVAEMVIAKAKCLVEYG-LDVVILLDSITRLCRAYNVLMPSSGKILT-GGVDANALQRPKRF 303 (423)
Q Consensus 227 -~~~vv~st~d~~~~~~~~~a~~a~~~a~~~~e~G-~dVll~~DslTR~ArA~~~~~~~~g~~~~-gg~~~~~l~~~~~~ 303 (423)
T Consensus 220 s~~vlV~~~~depp~~R~~~~~~a~tiAEyFRd~~~~dVLl~~D~ltR~A~A~REIslllge~P~~~GYppslf~~l~~L 299 (480)
T CHL00060 220 SKVALVYGQMNEPPGARMRVGLTALTMAEYFRDVNKQDVLLFIDNIFRFVQAGSEVSALLGRMPSAVGYQPTLSTEMGSL 299 (480)
T ss_pred EEEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHHHHH
T ss_conf 04899973567876889999999888999998748970899954628999888789986279998667896488887788
Q ss_pred HHCCCCCCCCCCCEEEEEEEECCCCCCCCHHHHHHHHCCCCEEEEEHHHHHCCCCCCCCCCCCCCCCHH-HCCCHHHHHH
Q ss_conf 522577777785001211201267655413889885226607898087884799974053354221015-5199999999
Q gi|254780810|r 304 FGAARNIKEGGSLTIIGTALVDTGSRMDEVIFEEFKGTGNSEIVLERKIADKRIFPAMDIIKSGTRKED-LLVERQDLQK 382 (423)
Q Consensus 304 ~~~ar~~~~~Gs~T~~~t~lvetg~~~d~~i~~~~~~~~d~~i~L~r~la~~~~~PAId~~~S~sR~~~-~l~~~~~~~~ 382 (423)
T Consensus 300 ~ER~~~~~-~GSITa~~~V~v~-~DD~tdPip~~~~silDg~ivLsr~La~~g~yPAID~l~S~Sr~m~p~iv~~~H~~~ 377 (480)
T CHL00060 300 QERITSTK-EGSITSIQAVYVP-ADDLTDPAPATTFAHLDATTVLSRGLAAKGIYPAVDPLDSTSTMLQPRIVGEEHYET 377 (480)
T ss_pred HHHHCCCC-CCCEEEEEEEEEC-CCCCCCCCHHHHHHHCCCEEEECHHHHHCCCCCCCCCCCCHHCCCCCCCCCHHHHHH
T ss_conf 88632788-8741567789703-776667614555221251499836588789989737520100047976489999999
Q ss_pred HHHHHHHHHCCCCHHHHHHHH
Q ss_conf 999999961269378999999
Q gi|254780810|r 383 VFMLRRIVSSMNSSDAIEFLI 403 (423)
Q Consensus 383 ~~~~r~~l~~~~~~e~~~~l~ 403 (423)
T Consensus 378 a~~v~~~L~~Y~el~diIail 398 (480)
T CHL00060 378 AQRVKQTLQRYKELQDIIAIL 398 (480)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999999989999999975