HHsearch alignment for GI: 254780810 and conserved domain: COG0055

>COG0055 AtpD F0F1-type ATP synthase, beta subunit [Energy production and conversion].
Probab=100.00  E-value=0  Score=398.61  Aligned_cols=321  Identities=18%  Similarity=0.214  Sum_probs=289.0

Q ss_pred             CCEEECCCCCCCCCCCCCEEEEEEEECCCCCCCCCCEEECCCCCCCHHHHHCCCC--HHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf             6046010000122125987999886246888763000222255688788512443--00020001122343247786532
Q gi|254780810|r   81 DIYVSPSQIKSFSLKTGDTVEGSIRAPREGERYFALLKVNAINFDVPERVRNKIH--FDNLTPLYPDKRFNMELNNPENK  158 (423)
Q Consensus        81 DiyVs~slir~f~Lr~GD~V~g~~r~~~~~~~~~~L~rV~~vnG~~~d~~~~~~~--f~~l~p~~p~~~i~le~~~~~p~  158 (423)
T Consensus        52 ~~VR~Iam~~t~gl~rg~~v~dtg~pi~VPVG~~~lgri~nvlG~~iD~~~~~~~~~~~~~~Ih~~~p~~~e~~~~~EIl  131 (468)
T COG0055          52 NVVRTIAMGSTDGLVRGLEVIDTGKPISVPVGKGTLGRIFNVLGEPIDEKGPIKAEDFEKWPIHRKAPSFEELSTKTEIL  131 (468)
T ss_pred             CEEEEEEECCCCCCCCCCEEECCCCCEEEECCHHHCCCCHHCCCCCCCCCCCCCCCCCEEEECCCCCCCHHHCCCCCHHH
T ss_conf             83899996375671037477507996687526322123102047734666888755550201257998355407730443


Q ss_pred             CHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHH-------CCEEE
Q ss_conf             13688899886551023122204877878999999999986118864699995087878999999840-------34278
Q gi|254780810|r  159 DISSRVIDLIAPIGKGQRSLIVAPPRTGKTILLQNIAHSIKKNHPECYLIVLLIDERPEEVTDMQRSV-------QGEVI  231 (423)
Q Consensus       159 ~~~~~~id~~~pig~gqr~~i~~~~~~gkt~ll~~ia~~~~~~~~~v~~i~~ligEr~~ev~e~~~~~-------~~~vv  231 (423)
T Consensus       132 eTGIKVIDll~P~~kGgKiGLFGGAGVGKTVl~~ELI~Nia~~h~g~SVFa-GvGERtREGndLy~Em~es~vl~ktalv  210 (468)
T COG0055         132 ETGIKVIDLLAPYAKGGKIGLFGGAGVGKTVLIQELINNIAKEHGGYSVFA-GVGERTREGNDLYHEMKESGVLDKTALV  210 (468)
T ss_pred             HHCCEEEEEECCCCCCCEEEEECCCCCCCEEEHHHHHHHHHHHCCCEEEEE-ECCCCCCCHHHHHHHHHHCCCCCCEEEE
T ss_conf             307368998411146864444236775620109999999999749868997-1353211157789999863887732699


Q ss_pred             ECCCCCCHHHHHHHHHHHHHHHHHHHHC-CCCEEEEEECHHHHHHHHHCCCCCCCCCCC-CCCCHHHHHHCHHHHHCCCC
Q ss_conf             2366788889999999999999999977-992899981638987762001366777677-75202466504687522577
Q gi|254780810|r  232 SSTFDESAARHVQVAEMVIAKAKCLVEY-GLDVVILLDSITRLCRAYNVLMPSSGKILT-GGVDANALQRPKRFFGAARN  309 (423)
Q Consensus       232 ~st~d~~~~~~~~~a~~a~~~a~~~~e~-G~dVll~~DslTR~ArA~~~~~~~~g~~~~-gg~~~~~l~~~~~~~~~ar~  309 (423)
T Consensus       211 ~gQMNEpPGaR~RValtGlT~AEyfRD~~gqdVLlFIDNIfRftQAGsEVSalLGr~PSavGYQpTLatemg~lQERI-t  289 (468)
T COG0055         211 FGQMNEPPGARMRVALTGLTMAEYFRDEEGQDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMGQLQERI-T  289 (468)
T ss_pred             EEECCCCCCCEEEEHHHHHHHHHHHHCCCCCEEEEEEHHHHHHHHCCHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHH-H
T ss_conf             960579986414551123319998640038758998425567762313899984569641456740677888899997-5


Q ss_pred             CCCCCCCEEEEEEEECCCCCCCCHHHHHHHHCCCCEEEEEHHHHHCCCCCCCCCCCCCCC-CHHHCCCHHHHHHHHHHHH
Q ss_conf             777785001211201267655413889885226607898087884799974053354221-0155199999999999999
Q gi|254780810|r  310 IKEGGSLTIIGTALVDTGSRMDEVIFEEFKGTGNSEIVLERKIADKRIFPAMDIIKSGTR-KEDLLVERQDLQKVFMLRR  388 (423)
Q Consensus       310 ~~~~Gs~T~~~t~lvetg~~~d~~i~~~~~~~~d~~i~L~r~la~~~~~PAId~~~S~sR-~~~~l~~~~~~~~~~~~r~  388 (423)
T Consensus       290 stk~GSITSiQavyvPa-DDlTDPapattFaHLDat~vLsR~iaa~GIyPAvDPL~StSr~l~p~ivGe~Hy~va~~vq~  368 (468)
T COG0055         290 STKKGSITSVQAVYVPA-DDLTDPAPATTFAHLDATTVLSRQIAALGIYPAVDPLDSTSRALDPKIVGEEHYEVAREVQS  368 (468)
T ss_pred             CCCCCCEEEEEEEEECC-CCCCCCCHHHHHHHCCCCEEEEHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf             37888668899998613-23789525556551344135637678668876658443422015864145899999999999


Q ss_pred             HHHCCCCHHHHHHHHH
Q ss_conf             9612693789999999
Q gi|254780810|r  389 IVSSMNSSDAIEFLID  404 (423)
Q Consensus       389 ~l~~~~~~e~~~~l~~  404 (423)
T Consensus       369 iLqrYkeLqDIIaILG  384 (468)
T COG0055         369 ILQRYKELQDIIAILG  384 (468)
T ss_pred             HHHHHHHHHHHHHHHC
T ss_conf             9999899999999838