HHsearch alignment for GI: 254780810 and conserved domain: COG0055
>COG0055 AtpD F0F1-type ATP synthase, beta subunit [Energy production and conversion].
Probab=100.00 E-value=0 Score=398.61 Aligned_cols=321 Identities=18% Similarity=0.214 Sum_probs=289.0
Q ss_pred CCEEECCCCCCCCCCCCCEEEEEEEECCCCCCCCCCEEECCCCCCCHHHHHCCCC--HHHCCCCCCCCCCCCCCCCCCCC
Q ss_conf 6046010000122125987999886246888763000222255688788512443--00020001122343247786532
Q gi|254780810|r 81 DIYVSPSQIKSFSLKTGDTVEGSIRAPREGERYFALLKVNAINFDVPERVRNKIH--FDNLTPLYPDKRFNMELNNPENK 158 (423)
Q Consensus 81 DiyVs~slir~f~Lr~GD~V~g~~r~~~~~~~~~~L~rV~~vnG~~~d~~~~~~~--f~~l~p~~p~~~i~le~~~~~p~ 158 (423)
T Consensus 52 ~~VR~Iam~~t~gl~rg~~v~dtg~pi~VPVG~~~lgri~nvlG~~iD~~~~~~~~~~~~~~Ih~~~p~~~e~~~~~EIl 131 (468)
T COG0055 52 NVVRTIAMGSTDGLVRGLEVIDTGKPISVPVGKGTLGRIFNVLGEPIDEKGPIKAEDFEKWPIHRKAPSFEELSTKTEIL 131 (468)
T ss_pred CEEEEEEECCCCCCCCCCEEECCCCCEEEECCHHHCCCCHHCCCCCCCCCCCCCCCCCEEEECCCCCCCHHHCCCCCHHH
T ss_conf 83899996375671037477507996687526322123102047734666888755550201257998355407730443
Q ss_pred CHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHH-------CCEEE
Q ss_conf 13688899886551023122204877878999999999986118864699995087878999999840-------34278
Q gi|254780810|r 159 DISSRVIDLIAPIGKGQRSLIVAPPRTGKTILLQNIAHSIKKNHPECYLIVLLIDERPEEVTDMQRSV-------QGEVI 231 (423)
Q Consensus 159 ~~~~~~id~~~pig~gqr~~i~~~~~~gkt~ll~~ia~~~~~~~~~v~~i~~ligEr~~ev~e~~~~~-------~~~vv 231 (423)
T Consensus 132 eTGIKVIDll~P~~kGgKiGLFGGAGVGKTVl~~ELI~Nia~~h~g~SVFa-GvGERtREGndLy~Em~es~vl~ktalv 210 (468)
T COG0055 132 ETGIKVIDLLAPYAKGGKIGLFGGAGVGKTVLIQELINNIAKEHGGYSVFA-GVGERTREGNDLYHEMKESGVLDKTALV 210 (468)
T ss_pred HHCCEEEEEECCCCCCCEEEEECCCCCCCEEEHHHHHHHHHHHCCCEEEEE-ECCCCCCCHHHHHHHHHHCCCCCCEEEE
T ss_conf 307368998411146864444236775620109999999999749868997-1353211157789999863887732699
Q ss_pred ECCCCCCHHHHHHHHHHHHHHHHHHHHC-CCCEEEEEECHHHHHHHHHCCCCCCCCCCC-CCCCHHHHHHCHHHHHCCCC
Q ss_conf 2366788889999999999999999977-992899981638987762001366777677-75202466504687522577
Q gi|254780810|r 232 SSTFDESAARHVQVAEMVIAKAKCLVEY-GLDVVILLDSITRLCRAYNVLMPSSGKILT-GGVDANALQRPKRFFGAARN 309 (423)
Q Consensus 232 ~st~d~~~~~~~~~a~~a~~~a~~~~e~-G~dVll~~DslTR~ArA~~~~~~~~g~~~~-gg~~~~~l~~~~~~~~~ar~ 309 (423)
T Consensus 211 ~gQMNEpPGaR~RValtGlT~AEyfRD~~gqdVLlFIDNIfRftQAGsEVSalLGr~PSavGYQpTLatemg~lQERI-t 289 (468)
T COG0055 211 FGQMNEPPGARMRVALTGLTMAEYFRDEEGQDVLLFIDNIFRFTQAGSEVSALLGRMPSAVGYQPTLATEMGQLQERI-T 289 (468)
T ss_pred EEECCCCCCCEEEEHHHHHHHHHHHHCCCCCEEEEEEHHHHHHHHCCHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHH-H
T ss_conf 960579986414551123319998640038758998425567762313899984569641456740677888899997-5
Q ss_pred CCCCCCCEEEEEEEECCCCCCCCHHHHHHHHCCCCEEEEEHHHHHCCCCCCCCCCCCCCC-CHHHCCCHHHHHHHHHHHH
Q ss_conf 777785001211201267655413889885226607898087884799974053354221-0155199999999999999
Q gi|254780810|r 310 IKEGGSLTIIGTALVDTGSRMDEVIFEEFKGTGNSEIVLERKIADKRIFPAMDIIKSGTR-KEDLLVERQDLQKVFMLRR 388 (423)
Q Consensus 310 ~~~~Gs~T~~~t~lvetg~~~d~~i~~~~~~~~d~~i~L~r~la~~~~~PAId~~~S~sR-~~~~l~~~~~~~~~~~~r~ 388 (423)
T Consensus 290 stk~GSITSiQavyvPa-DDlTDPapattFaHLDat~vLsR~iaa~GIyPAvDPL~StSr~l~p~ivGe~Hy~va~~vq~ 368 (468)
T COG0055 290 STKKGSITSVQAVYVPA-DDLTDPAPATTFAHLDATTVLSRQIAALGIYPAVDPLDSTSRALDPKIVGEEHYEVAREVQS 368 (468)
T ss_pred CCCCCCEEEEEEEEECC-CCCCCCCHHHHHHHCCCCEEEEHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 37888668899998613-23789525556551344135637678668876658443422015864145899999999999
Q ss_pred HHHCCCCHHHHHHHHH
Q ss_conf 9612693789999999
Q gi|254780810|r 389 IVSSMNSSDAIEFLID 404 (423)
Q Consensus 389 ~l~~~~~~e~~~~l~~ 404 (423)
T Consensus 369 iLqrYkeLqDIIaILG 384 (468)
T COG0055 369 ILQRYKELQDIIAILG 384 (468)
T ss_pred HHHHHHHHHHHHHHHC
T ss_conf 9999899999999838