HHsearch alignment for GI: 254780810 and conserved domain: COG0378
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription].
Probab=92.35 E-value=0.84 Score=24.41 Aligned_cols=90 Identities=23% Similarity=0.208 Sum_probs=51.6
Q ss_pred CCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHH-HC-CEEEECCCCCCHHHHHHHHHHHHHH
Q ss_conf 312220487787899999999998611886469999508787899999984-03-4278236678888999999999999
Q gi|254780810|r 175 QRSLIVAPPRTGKTILLQNIAHSIKKNHPECYLIVLLIDERPEEVTDMQRS-VQ-GEVISSTFDESAARHVQVAEMVIAK 252 (423)
Q Consensus 175 qr~~i~~~~~~gkt~ll~~ia~~~~~~~~~v~~i~~ligEr~~ev~e~~~~-~~-~~vv~st~d~~~~~~~~~a~~a~~~ 252 (423)
T Consensus 14 ~~i~v~Gp~GSGKTaLie~~~~~L~~~~~---~aVI~~Di~t~~Da~~l~~~~g~~i~~v~TG~~C---H-~da~m~~~a 86 (202)
T COG0378 14 LRIGVGGPPGSGKTALIEKTLRALKDEYK---IAVITGDIYTKEDADRLRKLPGEPIIGVETGKGC---H-LDASMNLEA 86 (202)
T ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHHCC---EEEEECEEECHHHHHHHHHCCCCEEEEECCCCCC---C-CCHHHHHHH
T ss_conf 89996179986789999999999975277---6899640400655999973779806874038765---8-867889999
Q ss_pred HHHHHHCCCC-EEEEEECHH
Q ss_conf 9999977992-899981638
Q gi|254780810|r 253 AKCLVEYGLD-VVILLDSIT 271 (423)
Q Consensus 253 a~~~~e~G~d-Vll~~DslT 271 (423)
T Consensus 87 i~~l~~~~~~~Dll~iEs~G 106 (202)
T COG0378 87 IEELVLDFPDLDLLFIESVG 106 (202)
T ss_pred HHHHHHCCCCCCEEEEECCC
T ss_conf 99986317767789992376