HHsearch alignment for GI: 254780810 and conserved domain: COG0468

>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair].
Probab=96.84  E-value=0.018  Score=35.39  Aligned_cols=114  Identities=20%  Similarity=0.223  Sum_probs=70.1

Q ss_pred             CCCCCHHHHHHHHHHHH--HCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEE-ECC-CCHHHHHHHHHHHCCEE
Q ss_conf             65321368889988655--102312220487787899999999998611886469999-508-78789999998403427
Q gi|254780810|r  155 PENKDISSRVIDLIAPI--GKGQRSLIVAPPRTGKTILLQNIAHSIKKNHPECYLIVL-LID-ERPEEVTDMQRSVQGEV  230 (423)
Q Consensus       155 ~~p~~~~~~~id~~~pi--g~gqr~~i~~~~~~gkt~ll~~ia~~~~~~~~~v~~i~~-lig-Er~~ev~e~~~~~~~~v  230 (423)
T Consensus        39 ~~~i~TGs~~LD~~LGGGl~~g~ItEiyG~~gsGKT~lal~~~~~aq~~g~--~a~fIDtE~~l~p~r~~~l~~~~~d~l  116 (279)
T COG0468          39 IEAISTGSLALDEALGGGLPRGRITEIYGPESSGKTTLALQLVANAQKPGG--KAAFIDTEHALDPERAKQLGVDLLDNL  116 (279)
T ss_pred             CCCCCCCCHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCC--EEEEEECCCCCCHHHHHHHHHHHHCCE
T ss_conf             660165505578774688655358998468876546689999888653798--089995899989999999887542153


Q ss_pred             EECCCCCCHHHHHHHHHHHHHHHHHHHHCC--CCEEEEEECHHHHHHHHH
Q ss_conf             823667888899999999999999999779--928999816389877620
Q gi|254780810|r  231 ISSTFDESAARHVQVAEMVIAKAKCLVEYG--LDVVILLDSITRLCRAYN  278 (423)
Q Consensus       231 v~st~d~~~~~~~~~a~~a~~~a~~~~e~G--~dVll~~DslTR~ArA~~  278 (423)
T Consensus       117 ~v~~~~~~-e~q~~-------i~~~~~~~~~~~i~LvVVDSvaa~~r~~~  158 (279)
T COG0468         117 LVSQPDTG-EQQLE-------IAEKLARSGAEKIDLLVVDSVAALVRAEE  158 (279)
T ss_pred             EEECCCCH-HHHHH-------HHHHHHHHCCCCCCEEEEECCCCCCHHHH
T ss_conf             68668977-99999-------99999875468878899825743463655