HHsearch alignment for GI: 254780810 and conserved domain: COG0468
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair].
Probab=96.84 E-value=0.018 Score=35.39 Aligned_cols=114 Identities=20% Similarity=0.223 Sum_probs=70.1
Q ss_pred CCCCCHHHHHHHHHHHH--HCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEE-ECC-CCHHHHHHHHHHHCCEE
Q ss_conf 65321368889988655--102312220487787899999999998611886469999-508-78789999998403427
Q gi|254780810|r 155 PENKDISSRVIDLIAPI--GKGQRSLIVAPPRTGKTILLQNIAHSIKKNHPECYLIVL-LID-ERPEEVTDMQRSVQGEV 230 (423)
Q Consensus 155 ~~p~~~~~~~id~~~pi--g~gqr~~i~~~~~~gkt~ll~~ia~~~~~~~~~v~~i~~-lig-Er~~ev~e~~~~~~~~v 230 (423)
T Consensus 39 ~~~i~TGs~~LD~~LGGGl~~g~ItEiyG~~gsGKT~lal~~~~~aq~~g~--~a~fIDtE~~l~p~r~~~l~~~~~d~l 116 (279)
T COG0468 39 IEAISTGSLALDEALGGGLPRGRITEIYGPESSGKTTLALQLVANAQKPGG--KAAFIDTEHALDPERAKQLGVDLLDNL 116 (279)
T ss_pred CCCCCCCCHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCC--EEEEEECCCCCCHHHHHHHHHHHHCCE
T ss_conf 660165505578774688655358998468876546689999888653798--089995899989999999887542153
Q ss_pred EECCCCCCHHHHHHHHHHHHHHHHHHHHCC--CCEEEEEECHHHHHHHHH
Q ss_conf 823667888899999999999999999779--928999816389877620
Q gi|254780810|r 231 ISSTFDESAARHVQVAEMVIAKAKCLVEYG--LDVVILLDSITRLCRAYN 278 (423)
Q Consensus 231 v~st~d~~~~~~~~~a~~a~~~a~~~~e~G--~dVll~~DslTR~ArA~~ 278 (423)
T Consensus 117 ~v~~~~~~-e~q~~-------i~~~~~~~~~~~i~LvVVDSvaa~~r~~~ 158 (279)
T COG0468 117 LVSQPDTG-EQQLE-------IAEKLARSGAEKIDLLVVDSVAALVRAEE 158 (279)
T ss_pred EEECCCCH-HHHHH-------HHHHHHHHCCCCCCEEEEECCCCCCHHHH
T ss_conf 68668977-99999-------99999875468878899825743463655