HHsearch alignment for GI: 254780810 and conserved domain: COG1158

>COG1158 Rho Transcription termination factor [Transcription].
Probab=100.00  E-value=0  Score=1006.41  Aligned_cols=422  Identities=70%  Similarity=1.086  Sum_probs=415.1

Q ss_pred             CCCCCHHHHHCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEEEEEEECCCCEEEEECCCCCCCCCC
Q ss_conf             97548799970998999999998389885766678999999987520587489999985404770267504548666655
Q gi|254780810|r    1 MSEMKLQELKNKSPTKLLAFAESLEIENANVMRKQELMFSILKVLSGRDVEIIGEGVIEVLQDGFGFLRSPDANYLAGPD   80 (423)
Q Consensus         1 M~~m~l~eL~~~~l~EL~eiAkelgIe~~~~l~K~eLI~~Il~~~~~~~g~~~~eGvLEIl~dGyGFLR~~~~~yl~~~~   80 (423)
T Consensus         1 ~~~~~~~~L~~~~~~~l~~~a~~~~i~~~~~~~K~dlifailk~~~e~g~~~~~~GvLeil~dGfGFLR~~~~~yl~~~~   80 (422)
T COG1158           1 VAEMSLTELKNKPLSELLELAEELGIENYSRLRKQDLIFAILKAQAEQGEEIFGDGVLEILPDGFGFLRSADSSYLPGPD   80 (422)
T ss_pred             CCCCCHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCEEECCCCCCCCCCC
T ss_conf             97544788740788999999998387506543078899999998764585586002798636774244057645578977


Q ss_pred             CCEEECCCCCCCCCCCCCEEEEEEEECCCCCCCCCCEEECCCCCCCHHHHHCCCCHHHCCCCCCCCCCCCCCCCCCCCCH
Q ss_conf             60460100001221259879998862468887630002222556887885124430002000112234324778653213
Q gi|254780810|r   81 DIYVSPSQIKSFSLKTGDTVEGSIRAPREGERYFALLKVNAINFDVPERVRNKIHFDNLTPLYPDKRFNMELNNPENKDI  160 (423)
Q Consensus        81 DiyVs~slir~f~Lr~GD~V~g~~r~~~~~~~~~~L~rV~~vnG~~~d~~~~~~~f~~l~p~~p~~~i~le~~~~~p~~~  160 (423)
T Consensus        81 DiYvSpSQIRrf~LrtGD~v~G~vR~Pke~Ery~aLl~ve~vN~~~pe~~k~R~~F~~LTPlyP~erl~LE~~~~-~~~l  159 (422)
T COG1158          81 DIYVSPSQIRRFNLRTGDTVEGKVRPPKEGERYFALLKVEAVNGDDPEKAKNRVLFENLTPLYPNERLKLERENG-STDL  159 (422)
T ss_pred             CEEECHHHHHHCCCCCCCEEEEEECCCCCCCCEEEEEEEEECCCCCHHHHHCCCCCCCCCCCCCCCEEEECCCCC-CCCC
T ss_conf             667878998650676688776664488764300004778612689979961467765588888622035204788-7650


Q ss_pred             HHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHCCEEEECCCCCCHH
Q ss_conf             68889988655102312220487787899999999998611886469999508787899999984034278236678888
Q gi|254780810|r  161 SSRVIDLIAPIGKGQRSLIVAPPRTGKTILLQNIAHSIKKNHPECYLIVLLIDERPEEVTDMQRSVQGEVISSTFDESAA  240 (423)
Q Consensus       161 ~~~~id~~~pig~gqr~~i~~~~~~gkt~ll~~ia~~~~~~~~~v~~i~~ligEr~~ev~e~~~~~~~~vv~st~d~~~~  240 (423)
T Consensus       160 s~RviDL~~PIGkGQR~LIVAPPkaGKT~lLq~IA~aIt~N~Pe~~LiVLLIDERPEEVTdmqrsV~geViaSTFDepp~  239 (422)
T COG1158         160 STRVIDLISPIGKGQRGLIVAPPKAGKTTLLQNIANAITTNHPECELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPPS  239 (422)
T ss_pred             HHHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCCEEEEEEEECCCCHHHHHHHHHHCCEEEEECCCCCHH
T ss_conf             26676652656788465686698787338999999998637996499999934780677778875240698644888605


Q ss_pred             HHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHCHHHHHCCCCCCCCCCCEEEE
Q ss_conf             99999999999999999779928999816389877620013667776777520246650468752257777778500121
Q gi|254780810|r  241 RHVQVAEMVIAKAKCLVEYGLDVVILLDSITRLCRAYNVLMPSSGKILTGGVDANALQRPKRFFGAARNIKEGGSLTIIG  320 (423)
Q Consensus       241 ~~~~~a~~a~~~a~~~~e~G~dVll~~DslTR~ArA~~~~~~~~g~~~~gg~~~~~l~~~~~~~~~ar~~~~~Gs~T~~~  320 (423)
T Consensus       240 ~HvqVAE~viEkAKRlVE~~kDVVILLDSITRLaRAYN~v~P~SGkvLsGGvD~nAL~~PKrFFGAARNIEeGGSLTIiA  319 (422)
T COG1158         240 RHVQVAEMVIEKAKRLVEHGKDVVILLDSITRLARAYNTVVPSSGKVLSGGVDANALHRPKRFFGAARNIEEGGSLTIIA  319 (422)
T ss_pred             HHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHCCCCCCCCCEECCCCCHHHHCCCHHHHHHHHCCCCCCCHHHHH
T ss_conf             46899999999999888717868999656778998853667997774048738566048355421220554586341111


Q ss_pred             EEEECCCCCCCCHHHHHHHHCCCCEEEEEHHHHHCCCCCCCCCCCCCCCCHHHCCCHHHHHHHHHHHHHHHCCCCHHHHH
Q ss_conf             12012676554138898852266078980878847999740533542210155199999999999999961269378999
Q gi|254780810|r  321 TALVDTGSRMDEVIFEEFKGTGNSEIVLERKIADKRIFPAMDIIKSGTRKEDLLVERQDLQKVFMLRRIVSSMNSSDAIE  400 (423)
Q Consensus       321 t~lvetg~~~d~~i~~~~~~~~d~~i~L~r~la~~~~~PAId~~~S~sR~~~~l~~~~~~~~~~~~r~~l~~~~~~e~~~  400 (423)
T Consensus       320 TALVdTGSrMDeVIfEEFKGTGNmEl~LdR~laerRifPAIdi~kSGTRkEeLLl~~~~l~k~w~lRr~l~~md~~~a~e  399 (422)
T COG1158         320 TALVDTGSRMDEVIFEEFKGTGNMELHLDRKLAERRIFPAIDINKSGTRKEELLLSPDELQKMWVLRRILSPMDEIDAIE  399 (422)
T ss_pred             HHHHHCCCCCCHHHHHHHCCCCCEEEEEHHHHHHCCCCCCEECCCCCCCHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHH
T ss_conf             12441477511202534257775078860134441245302035677615765489999999999999736787489999


Q ss_pred             HHHHHHHCCCCHHHHHHHHHCCC
Q ss_conf             99998402899899998643059
Q gi|254780810|r  401 FLIDKLKQTKDNKDFFYSMNKQN  423 (423)
Q Consensus       401 ~l~~~~~~~~~n~e~l~~~~k~~  423 (423)
T Consensus       400 ~li~klk~Tk~N~eF~~~m~~~~  422 (422)
T COG1158         400 FLIDKLKKTKTNDEFLEQMNKSK  422 (422)
T ss_pred             HHHHHHHCCCCHHHHHHHHHCCC
T ss_conf             99999871166899999853379