HHsearch alignment for GI: 254780810 and conserved domain: COG1158
>COG1158 Rho Transcription termination factor [Transcription].
Probab=100.00 E-value=0 Score=1006.41 Aligned_cols=422 Identities=70% Similarity=1.086 Sum_probs=415.1
Q ss_pred CCCCCHHHHHCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHCCCEEEEEEEEEEECCCCEEEEECCCCCCCCCC
Q ss_conf 97548799970998999999998389885766678999999987520587489999985404770267504548666655
Q gi|254780810|r 1 MSEMKLQELKNKSPTKLLAFAESLEIENANVMRKQELMFSILKVLSGRDVEIIGEGVIEVLQDGFGFLRSPDANYLAGPD 80 (423)
Q Consensus 1 M~~m~l~eL~~~~l~EL~eiAkelgIe~~~~l~K~eLI~~Il~~~~~~~g~~~~eGvLEIl~dGyGFLR~~~~~yl~~~~ 80 (423)
T Consensus 1 ~~~~~~~~L~~~~~~~l~~~a~~~~i~~~~~~~K~dlifailk~~~e~g~~~~~~GvLeil~dGfGFLR~~~~~yl~~~~ 80 (422)
T COG1158 1 VAEMSLTELKNKPLSELLELAEELGIENYSRLRKQDLIFAILKAQAEQGEEIFGDGVLEILPDGFGFLRSADSSYLPGPD 80 (422)
T ss_pred CCCCCHHHHHHCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEEEEEECCCCCCEEECCCCCCCCCCC
T ss_conf 97544788740788999999998387506543078899999998764585586002798636774244057645578977
Q ss_pred CCEEECCCCCCCCCCCCCEEEEEEEECCCCCCCCCCEEECCCCCCCHHHHHCCCCHHHCCCCCCCCCCCCCCCCCCCCCH
Q ss_conf 60460100001221259879998862468887630002222556887885124430002000112234324778653213
Q gi|254780810|r 81 DIYVSPSQIKSFSLKTGDTVEGSIRAPREGERYFALLKVNAINFDVPERVRNKIHFDNLTPLYPDKRFNMELNNPENKDI 160 (423)
Q Consensus 81 DiyVs~slir~f~Lr~GD~V~g~~r~~~~~~~~~~L~rV~~vnG~~~d~~~~~~~f~~l~p~~p~~~i~le~~~~~p~~~ 160 (423)
T Consensus 81 DiYvSpSQIRrf~LrtGD~v~G~vR~Pke~Ery~aLl~ve~vN~~~pe~~k~R~~F~~LTPlyP~erl~LE~~~~-~~~l 159 (422)
T COG1158 81 DIYVSPSQIRRFNLRTGDTVEGKVRPPKEGERYFALLKVEAVNGDDPEKAKNRVLFENLTPLYPNERLKLERENG-STDL 159 (422)
T ss_pred CEEECHHHHHHCCCCCCCEEEEEECCCCCCCCEEEEEEEEECCCCCHHHHHCCCCCCCCCCCCCCCEEEECCCCC-CCCC
T ss_conf 667878998650676688776664488764300004778612689979961467765588888622035204788-7650
Q ss_pred HHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHCCEEEECCCCCCHH
Q ss_conf 68889988655102312220487787899999999998611886469999508787899999984034278236678888
Q gi|254780810|r 161 SSRVIDLIAPIGKGQRSLIVAPPRTGKTILLQNIAHSIKKNHPECYLIVLLIDERPEEVTDMQRSVQGEVISSTFDESAA 240 (423)
Q Consensus 161 ~~~~id~~~pig~gqr~~i~~~~~~gkt~ll~~ia~~~~~~~~~v~~i~~ligEr~~ev~e~~~~~~~~vv~st~d~~~~ 240 (423)
T Consensus 160 s~RviDL~~PIGkGQR~LIVAPPkaGKT~lLq~IA~aIt~N~Pe~~LiVLLIDERPEEVTdmqrsV~geViaSTFDepp~ 239 (422)
T COG1158 160 STRVIDLISPIGKGQRGLIVAPPKAGKTTLLQNIANAITTNHPECELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPPS 239 (422)
T ss_pred HHHHHHHHCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHCCCCCEEEEEEEECCCCHHHHHHHHHHCCEEEEECCCCCHH
T ss_conf 26676652656788465686698787338999999998637996499999934780677778875240698644888605
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHCHHHHHCCCCCCCCCCCEEEE
Q ss_conf 99999999999999999779928999816389877620013667776777520246650468752257777778500121
Q gi|254780810|r 241 RHVQVAEMVIAKAKCLVEYGLDVVILLDSITRLCRAYNVLMPSSGKILTGGVDANALQRPKRFFGAARNIKEGGSLTIIG 320 (423)
Q Consensus 241 ~~~~~a~~a~~~a~~~~e~G~dVll~~DslTR~ArA~~~~~~~~g~~~~gg~~~~~l~~~~~~~~~ar~~~~~Gs~T~~~ 320 (423)
T Consensus 240 ~HvqVAE~viEkAKRlVE~~kDVVILLDSITRLaRAYN~v~P~SGkvLsGGvD~nAL~~PKrFFGAARNIEeGGSLTIiA 319 (422)
T COG1158 240 RHVQVAEMVIEKAKRLVEHGKDVVILLDSITRLARAYNTVVPSSGKVLSGGVDANALHRPKRFFGAARNIEEGGSLTIIA 319 (422)
T ss_pred HHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHHHHHCCCCCCCCCEECCCCCHHHHCCCHHHHHHHHCCCCCCCHHHHH
T ss_conf 46899999999999888717868999656778998853667997774048738566048355421220554586341111
Q ss_pred EEEECCCCCCCCHHHHHHHHCCCCEEEEEHHHHHCCCCCCCCCCCCCCCCHHHCCCHHHHHHHHHHHHHHHCCCCHHHHH
Q ss_conf 12012676554138898852266078980878847999740533542210155199999999999999961269378999
Q gi|254780810|r 321 TALVDTGSRMDEVIFEEFKGTGNSEIVLERKIADKRIFPAMDIIKSGTRKEDLLVERQDLQKVFMLRRIVSSMNSSDAIE 400 (423)
Q Consensus 321 t~lvetg~~~d~~i~~~~~~~~d~~i~L~r~la~~~~~PAId~~~S~sR~~~~l~~~~~~~~~~~~r~~l~~~~~~e~~~ 400 (423)
T Consensus 320 TALVdTGSrMDeVIfEEFKGTGNmEl~LdR~laerRifPAIdi~kSGTRkEeLLl~~~~l~k~w~lRr~l~~md~~~a~e 399 (422)
T COG1158 320 TALVDTGSRMDEVIFEEFKGTGNMELHLDRKLAERRIFPAIDINKSGTRKEELLLSPDELQKMWVLRRILSPMDEIDAIE 399 (422)
T ss_pred HHHHHCCCCCCHHHHHHHCCCCCEEEEEHHHHHHCCCCCCEECCCCCCCHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHH
T ss_conf 12441477511202534257775078860134441245302035677615765489999999999999736787489999
Q ss_pred HHHHHHHCCCCHHHHHHHHHCCC
Q ss_conf 99998402899899998643059
Q gi|254780810|r 401 FLIDKLKQTKDNKDFFYSMNKQN 423 (423)
Q Consensus 401 ~l~~~~~~~~~n~e~l~~~~k~~ 423 (423)
T Consensus 400 ~li~klk~Tk~N~eF~~~m~~~~ 422 (422)
T COG1158 400 FLIDKLKKTKTNDEFLEQMNKSK 422 (422)
T ss_pred HHHHHHHCCCCHHHHHHHHHCCC
T ss_conf 99999871166899999853379