HHsearch alignment for GI: 254780810 and conserved domain: COG1219
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones].
Probab=93.23 E-value=0.24 Score=27.99 Aligned_cols=97 Identities=25% Similarity=0.374 Sum_probs=56.1
Q ss_pred CEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEE-ECCCCHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 12220487787899999999998611886469999-50878789999998403427823667888899999999999999
Q gi|254780810|r 176 RSLIVAPPRTGKTILLQNIAHSIKKNHPECYLIVL-LIDERPEEVTDMQRSVQGEVISSTFDESAARHVQVAEMVIAKAK 254 (423)
Q Consensus 176 r~~i~~~~~~gkt~ll~~ia~~~~~~~~~v~~i~~-ligEr~~ev~e~~~~~~~~vv~st~d~~~~~~~~~a~~a~~~a~ 254 (423)
T Consensus 99 NILLiGPTGsGKTlLAqTLAk~LnVPFaiADATtLTEAGYVGEDVENillkL----------------lqaadydV~rAe 162 (408)
T COG1219 99 NILLIGPTGSGKTLLAQTLAKILNVPFAIADATTLTEAGYVGEDVENILLKL----------------LQAADYDVERAE 162 (408)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHCCCEEECCCCCHHHCCCCCHHHHHHHHHH----------------HHHCCCCHHHHH
T ss_conf 1799888997577999999998489847514441210663550089999999----------------987645888882
Q ss_pred HHHHCCCCEEEEEECHHHHHHHHHCCCCCCCCCCCC-CCCHHHH
Q ss_conf 999779928999816389877620013667776777-5202466
Q gi|254780810|r 255 CLVEYGLDVVILLDSITRLCRAYNVLMPSSGKILTG-GVDANAL 297 (423)
Q Consensus 255 ~~~e~G~dVll~~DslTR~ArA~~~~~~~~g~~~~g-g~~~~~l 297 (423)
T Consensus 163 r-------GIIyIDEIDKIarkSe--n~SITRDVSGEGVQQALL 197 (408)
T COG1219 163 R-------GIIYIDEIDKIARKSE--NPSITRDVSGEGVQQALL 197 (408)
T ss_pred C-------CEEEEECHHHHHCCCC--CCCCCCCCCCHHHHHHHH
T ss_conf 8-------8599851025420578--987234367358999999