HHsearch alignment for GI: 254780810 and conserved domain: COG1219

>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones].
Probab=93.23  E-value=0.24  Score=27.99  Aligned_cols=97  Identities=25%  Similarity=0.374  Sum_probs=56.1

Q ss_pred             CEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEE-ECCCCHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHHHHHHH
Q ss_conf             12220487787899999999998611886469999-50878789999998403427823667888899999999999999
Q gi|254780810|r  176 RSLIVAPPRTGKTILLQNIAHSIKKNHPECYLIVL-LIDERPEEVTDMQRSVQGEVISSTFDESAARHVQVAEMVIAKAK  254 (423)
Q Consensus       176 r~~i~~~~~~gkt~ll~~ia~~~~~~~~~v~~i~~-ligEr~~ev~e~~~~~~~~vv~st~d~~~~~~~~~a~~a~~~a~  254 (423)
T Consensus        99 NILLiGPTGsGKTlLAqTLAk~LnVPFaiADATtLTEAGYVGEDVENillkL----------------lqaadydV~rAe  162 (408)
T COG1219          99 NILLIGPTGSGKTLLAQTLAKILNVPFAIADATTLTEAGYVGEDVENILLKL----------------LQAADYDVERAE  162 (408)
T ss_pred             CEEEECCCCCCHHHHHHHHHHHHCCCEEECCCCCHHHCCCCCHHHHHHHHHH----------------HHHCCCCHHHHH
T ss_conf             1799888997577999999998489847514441210663550089999999----------------987645888882


Q ss_pred             HHHHCCCCEEEEEECHHHHHHHHHCCCCCCCCCCCC-CCCHHHH
Q ss_conf             999779928999816389877620013667776777-5202466
Q gi|254780810|r  255 CLVEYGLDVVILLDSITRLCRAYNVLMPSSGKILTG-GVDANAL  297 (423)
Q Consensus       255 ~~~e~G~dVll~~DslTR~ArA~~~~~~~~g~~~~g-g~~~~~l  297 (423)
T Consensus       163 r-------GIIyIDEIDKIarkSe--n~SITRDVSGEGVQQALL  197 (408)
T COG1219         163 R-------GIIYIDEIDKIARKSE--NPSITRDVSGEGVQQALL  197 (408)
T ss_pred             C-------CEEEEECHHHHHCCCC--CCCCCCCCCCHHHHHHHH
T ss_conf             8-------8599851025420578--987234367358999999