HHsearch alignment for GI: 254780810 and conserved domain: COG1222

>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones].
Probab=96.83  E-value=0.042  Score=32.98  Aligned_cols=155  Identities=21%  Similarity=0.213  Sum_probs=80.7

Q ss_pred             EEEEEEEEEEECCCCEEEEECCCCCCCCCCCCEEECCCCCCCCCCCCCEEEEEEEE----CCCCCCCCCCEEECCCCCCC
Q ss_conf             48999998540477026750454866665560460100001221259879998862----46888763000222255688
Q gi|254780810|r   51 EIIGEGVIEVLQDGFGFLRSPDANYLAGPDDIYVSPSQIKSFSLKTGDTVEGSIRA----PREGERYFALLKVNAINFDV  126 (423)
Q Consensus        51 ~~~~eGvLEIl~dGyGFLR~~~~~yl~~~~DiyVs~slir~f~Lr~GD~V~g~~r~----~~~~~~~~~L~rV~~vnG~~  126 (423)
T Consensus        72 pl~vg~v~e~id~~~~iVks-----~~g~~~vV~i~~~vd~~~L~pG~rVal~~~s~~Iv~vLp~~~Dp~V~~M~v~e~P  146 (406)
T COG1222          72 PLIVGTVLEVLDDGRAIVKS-----STGPKFVVNILSFVDRDLLEPGMRVALNRDSYSIVRVLPPEVDPRVSVMEVEEKP  146 (406)
T ss_pred             CCEEEEEEEECCCCEEEEEE-----CCCCEEEEECCCCCCHHHCCCCCEEEECCCCCEEEEECCCCCCCHHHEEEECCCC
T ss_conf             95689999981786189970-----7997188734687698786998889985776145661787557620200112589


Q ss_pred             HHHHHCCCCHHHC-CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCC--EEEECCCCCCHHHHHHHHHHHHHHCCC
Q ss_conf             7885124430002-0001122343247786532136888998865510231--222048778789999999999861188
Q gi|254780810|r  127 PERVRNKIHFDNL-TPLYPDKRFNMELNNPENKDISSRVIDLIAPIGKGQR--SLIVAPPRTGKTILLQNIAHSIKKNHP  203 (423)
Q Consensus       127 ~d~~~~~~~f~~l-~p~~p~~~i~le~~~~~p~~~~~~~id~~~pig~gqr--~~i~~~~~~gkt~ll~~ia~~~~~~~~  203 (423)
T Consensus       147 dvtY~dIGGL~~Qi~Eir------------E~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtF-  213 (406)
T COG1222         147 DVTYEDIGGLDEQIQEIR------------EVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATF-  213 (406)
T ss_pred             CCCHHHCCCHHHHHHHHH------------HHHCCCCCCHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHCCCCEE-
T ss_conf             878653358899999999------------9840336688899974999997127668999758899999872058669-


Q ss_pred             CCEEEEE------ECCCCHHHHHHHHHH
Q ss_conf             6469999------508787899999984
Q gi|254780810|r  204 ECYLIVL------LIDERPEEVTDMQRS  225 (423)
Q Consensus       204 ~v~~i~~------ligEr~~ev~e~~~~  225 (423)
T Consensus       214 --IrvvgSElVqKYiGEGaRlVRelF~l  239 (406)
T COG1222         214 --IRVVGSELVQKYIGEGARLVRELFEL  239 (406)
T ss_pred             --EEECCHHHHHHHHCCCHHHHHHHHHH
T ss_conf             --99421999999834116999999998