HHsearch alignment for GI: 254780810 and conserved domain: COG1222
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones].
Probab=96.83 E-value=0.042 Score=32.98 Aligned_cols=155 Identities=21% Similarity=0.213 Sum_probs=80.7
Q ss_pred EEEEEEEEEEECCCCEEEEECCCCCCCCCCCCEEECCCCCCCCCCCCCEEEEEEEE----CCCCCCCCCCEEECCCCCCC
Q ss_conf 48999998540477026750454866665560460100001221259879998862----46888763000222255688
Q gi|254780810|r 51 EIIGEGVIEVLQDGFGFLRSPDANYLAGPDDIYVSPSQIKSFSLKTGDTVEGSIRA----PREGERYFALLKVNAINFDV 126 (423)
Q Consensus 51 ~~~~eGvLEIl~dGyGFLR~~~~~yl~~~~DiyVs~slir~f~Lr~GD~V~g~~r~----~~~~~~~~~L~rV~~vnG~~ 126 (423)
T Consensus 72 pl~vg~v~e~id~~~~iVks-----~~g~~~vV~i~~~vd~~~L~pG~rVal~~~s~~Iv~vLp~~~Dp~V~~M~v~e~P 146 (406)
T COG1222 72 PLIVGTVLEVLDDGRAIVKS-----STGPKFVVNILSFVDRDLLEPGMRVALNRDSYSIVRVLPPEVDPRVSVMEVEEKP 146 (406)
T ss_pred CCEEEEEEEECCCCEEEEEE-----CCCCEEEEECCCCCCHHHCCCCCEEEECCCCCEEEEECCCCCCCHHHEEEECCCC
T ss_conf 95689999981786189970-----7997188734687698786998889985776145661787557620200112589
Q ss_pred HHHHHCCCCHHHC-CCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCC--EEEECCCCCCHHHHHHHHHHHHHHCCC
Q ss_conf 7885124430002-0001122343247786532136888998865510231--222048778789999999999861188
Q gi|254780810|r 127 PERVRNKIHFDNL-TPLYPDKRFNMELNNPENKDISSRVIDLIAPIGKGQR--SLIVAPPRTGKTILLQNIAHSIKKNHP 203 (423)
Q Consensus 127 ~d~~~~~~~f~~l-~p~~p~~~i~le~~~~~p~~~~~~~id~~~pig~gqr--~~i~~~~~~gkt~ll~~ia~~~~~~~~ 203 (423)
T Consensus 147 dvtY~dIGGL~~Qi~Eir------------E~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtF- 213 (406)
T COG1222 147 DVTYEDIGGLDEQIQEIR------------EVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATF- 213 (406)
T ss_pred CCCHHHCCCHHHHHHHHH------------HHHCCCCCCHHHHHHCCCCCCCCEEEECCCCCCHHHHHHHHHHCCCCEE-
T ss_conf 878653358899999999------------9840336688899974999997127668999758899999872058669-
Q ss_pred CCEEEEE------ECCCCHHHHHHHHHH
Q ss_conf 6469999------508787899999984
Q gi|254780810|r 204 ECYLIVL------LIDERPEEVTDMQRS 225 (423)
Q Consensus 204 ~v~~i~~------ligEr~~ev~e~~~~ 225 (423)
T Consensus 214 --IrvvgSElVqKYiGEGaRlVRelF~l 239 (406)
T COG1222 214 --IRVVGSELVQKYIGEGARLVRELFEL 239 (406)
T ss_pred --EEECCHHHHHHHHCCCHHHHHHHHHH
T ss_conf --99421999999834116999999998