HHsearch alignment for GI: 254780810 and conserved domain: COG2255
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair].
Probab=94.27 E-value=0.039 Score=33.16 Aligned_cols=83 Identities=23% Similarity=0.332 Sum_probs=50.7
Q ss_pred HHHHHHHHHHCCCC-----EEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHCCEEEECCCCC
Q ss_conf 88998865510231-----2220487787899999999998611886469999508787899999984034278236678
Q gi|254780810|r 163 RVIDLIAPIGKGQR-----SLIVAPPRTGKTILLQNIAHSIKKNHPECYLIVLLIDERPEEVTDMQRSVQGEVISSTFDE 237 (423)
Q Consensus 163 ~~id~~~pig~gqr-----~~i~~~~~~gkt~ll~~ia~~~~~~~~~v~~i~~ligEr~~ev~e~~~~~~~~vv~st~d~ 237 (423)
T Consensus 36 ~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~---k~tsGp~leK~gDlaaiLt~------------ 100 (332)
T COG2255 36 EQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANELGVNL---KITSGPALEKPGDLAAILTN------------ 100 (332)
T ss_pred HHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCE---EECCCCCCCCHHHHHHHHHC------------
T ss_conf 999999999984498767478647998768889999999856773---76366201572659999863------------
Q ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHCCC
Q ss_conf 88899999999999999999779928999816389877620013
Q gi|254780810|r 238 SAARHVQVAEMVIAKAKCLVEYGLDVVILLDSITRLCRAYNVLM 281 (423)
Q Consensus 238 ~~~~~~~~a~~a~~~a~~~~e~G~dVll~~DslTR~ArA~~~~~ 281 (423)
T Consensus 101 ---------------------Le~~DVLFIDEIHrl~~~vEE~L 123 (332)
T COG2255 101 ---------------------LEEGDVLFIDEIHRLSPAVEEVL 123 (332)
T ss_pred ---------------------CCCCCEEEEEHHHHCCHHHHHHH
T ss_conf ---------------------98677677725531474289896