HHsearch alignment for GI: 254780810 and conserved domain: COG2255

>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair].
Probab=94.27  E-value=0.039  Score=33.16  Aligned_cols=83  Identities=23%  Similarity=0.332  Sum_probs=50.7

Q ss_pred             HHHHHHHHHHCCCC-----EEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHCCEEEECCCCC
Q ss_conf             88998865510231-----2220487787899999999998611886469999508787899999984034278236678
Q gi|254780810|r  163 RVIDLIAPIGKGQR-----SLIVAPPRTGKTILLQNIAHSIKKNHPECYLIVLLIDERPEEVTDMQRSVQGEVISSTFDE  237 (423)
Q Consensus       163 ~~id~~~pig~gqr-----~~i~~~~~~gkt~ll~~ia~~~~~~~~~v~~i~~ligEr~~ev~e~~~~~~~~vv~st~d~  237 (423)
T Consensus        36 ~~L~ifI~AAk~r~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~---k~tsGp~leK~gDlaaiLt~------------  100 (332)
T COG2255          36 EQLQIFIKAAKKRGEALDHVLLFGPPGLGKTTLAHIIANELGVNL---KITSGPALEKPGDLAAILTN------------  100 (332)
T ss_pred             HHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHCCCE---EECCCCCCCCHHHHHHHHHC------------
T ss_conf             999999999984498767478647998768889999999856773---76366201572659999863------------


Q ss_pred             CHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHCCC
Q ss_conf             88899999999999999999779928999816389877620013
Q gi|254780810|r  238 SAARHVQVAEMVIAKAKCLVEYGLDVVILLDSITRLCRAYNVLM  281 (423)
Q Consensus       238 ~~~~~~~~a~~a~~~a~~~~e~G~dVll~~DslTR~ArA~~~~~  281 (423)
T Consensus       101 ---------------------Le~~DVLFIDEIHrl~~~vEE~L  123 (332)
T COG2255         101 ---------------------LEEGDVLFIDEIHRLSPAVEEVL  123 (332)
T ss_pred             ---------------------CCCCCEEEEEHHHHCCHHHHHHH
T ss_conf             ---------------------98677677725531474289896