HHsearch alignment for GI: 254780810 and conserved domain: COG2256
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair].
Probab=97.58 E-value=0.00052 Score=45.51 Aligned_cols=109 Identities=20% Similarity=0.251 Sum_probs=71.2
Q ss_pred HHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHCCEEEECCCCCCHHHHH
Q ss_conf 89988655102312220487787899999999998611886469999508787899999984034278236678888999
Q gi|254780810|r 164 VIDLIAPIGKGQRSLIVAPPRTGKTILLQNIAHSIKKNHPECYLIVLLIDERPEEVTDMQRSVQGEVISSTFDESAARHV 243 (423)
Q Consensus 164 ~id~~~pig~gqr~~i~~~~~~gkt~ll~~ia~~~~~~~~~v~~i~~ligEr~~ev~e~~~~~~~~vv~st~d~~~~~~~ 243 (423)
T Consensus 38 ~lrr~v~~~~l~SmIl~GPPG~GKTTlA~liA~~~~~~------f~--------------------~~sAv~~gvkdl-- 89 (436)
T COG2256 38 PLRRAVEAGHLHSMILWGPPGTGKTTLARLIAGTTNAA------FE--------------------ALSAVTSGVKDL-- 89 (436)
T ss_pred HHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHCCC------EE--------------------EECCCCCCHHHH--
T ss_conf 38999964998605777899988889999998761776------69--------------------951523467999--
Q ss_pred HHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHCC------------CCCCCCCCCCCCCHHHHHHCHHH
Q ss_conf 9999999999999977992899981638987762001------------36677767775202466504687
Q gi|254780810|r 244 QVAEMVIAKAKCLVEYGLDVVILLDSITRLCRAYNVL------------MPSSGKILTGGVDANALQRPKRF 303 (423)
Q Consensus 244 ~~a~~a~~~a~~~~e~G~dVll~~DslTR~ArA~~~~------------~~~~g~~~~gg~~~~~l~~~~~~ 303 (423)
T Consensus 90 ---r~i~e~a~~~~~~gr~tiLflDEIHRfnK~QQD~lLp~vE~G~iilIGATTENPsF~ln~ALlSR~~vf 158 (436)
T COG2256 90 ---REIIEEARKNRLLGRRTILFLDEIHRFNKAQQDALLPHVENGTIILIGATTENPSFELNPALLSRARVF 158 (436)
T ss_pred ---HHHHHHHHHHHHCCCCEEEEEEHHHHCCHHHHHHHHHHHCCCEEEEEECCCCCCCEEECHHHHHHHHEE
T ss_conf ---999999999872588349987225333744565510332488689996267898714038886110415