HHsearch alignment for GI: 254780810 and conserved domain: COG3854
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown].
Probab=96.73 E-value=0.0018 Score=41.91 Aligned_cols=48 Identities=38% Similarity=0.511 Sum_probs=33.5
Q ss_pred HCCCC-EEEECCCCCCHHHHHHHHHHHHHHCCCC-CEEEEEECCCCHHHH
Q ss_conf 10231-2220487787899999999998611886-469999508787899
Q gi|254780810|r 172 GKGQR-SLIVAPPRTGKTILLQNIAHSIKKNHPE-CYLIVLLIDERPEEV 219 (423)
Q Consensus 172 g~gqr-~~i~~~~~~gkt~ll~~ia~~~~~~~~~-v~~i~~ligEr~~ev 219 (423)
T Consensus 134 ~~g~lntLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDersEIa 183 (308)
T COG3854 134 QNGWLNTLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERSEIA 183 (308)
T ss_pred HCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCEEEEEECCCHHH
T ss_conf 43722469965998870779999999863151126773289971500430