HHsearch alignment for GI: 254780810 and conserved domain: PRK05201
>PRK05201 hslU ATP-dependent protease ATP-binding subunit; Provisional.
Probab=92.46 E-value=0.14 Score=29.46 Aligned_cols=107 Identities=14% Similarity=0.197 Sum_probs=55.5
Q ss_pred CEEEEEECHHHHHHHHHCCCCCCCCCCCC-CCCHHHHHHCHHHHHCCCCCCCCCCCEEEEEEEECCC----CCCCCHHHH
Q ss_conf 28999816389877620013667776777-5202466504687522577777785001211201267----655413889
Q gi|254780810|r 262 DVVILLDSITRLCRAYNVLMPSSGKILTG-GVDANALQRPKRFFGAARNIKEGGSLTIIGTALVDTG----SRMDEVIFE 336 (423)
Q Consensus 262 dVll~~DslTR~ArA~~~~~~~~g~~~~g-g~~~~~l~~~~~~~~~ar~~~~~Gs~T~~~t~lvetg----~~~d~~i~~ 336 (423)
T Consensus 249 ~GIVFIDEIDKIa~~~~----~~g~DVS~EGVQrd---LLpivEGt~V~tK-~G~V~TdhILFIasGAFh~sKPSDLIPE 320 (442)
T PRK05201 249 NGIVFIDEIDKIAKRGE----GSGPDVSREGVQRD---LLPLVEGSTVSTK-YGMVKTDHILFIASGAFHVAKPSDLIPE 320 (442)
T ss_pred CCCEEECHHHHHHCCCC----CCCCCCCCHHHHHH---HHHHHCCCCCCCC-CCCCCCCEEEEECCCCCCCCCCCHHHHH
T ss_conf 17045114656530357----88989773307888---7887538855567-7760255034550450014782022498
Q ss_pred HHHHCCCCEEEEEHHHHHCCCCCCCCCCCCCCC-CHHHCCCHHHHHHHHHHHHHHHCC
Q ss_conf 885226607898087884799974053354221-015519999999999999996126
Q gi|254780810|r 337 EFKGTGNSEIVLERKIADKRIFPAMDIIKSGTR-KEDLLVERQDLQKVFMLRRIVSSM 393 (423)
Q Consensus 337 ~~~~~~d~~i~L~r~la~~~~~PAId~~~S~sR-~~~~l~~~~~~~~~~~~r~~l~~~ 393 (423)
T Consensus 321 -----------------l~GRlPv~v~L~~L~~~dl~~ILtepknsL~kQy~~Lf~~e 361 (442)
T PRK05201 321 -----------------LQGRFPIRVELDALTEEDFVRILTEPKASLIKQYQALLATE 361 (442)
T ss_pred -----------------HCCCCEEEEECCCCCHHHHHHHHCCCCHHHHHHHHHHHHHC
T ss_conf -----------------71755058882449999999996786157899999998624