HHsearch alignment for GI: 254780810 and conserved domain: PRK05342
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional.
Probab=96.85 E-value=0.0037 Score=39.94 Aligned_cols=108 Identities=23% Similarity=0.388 Sum_probs=66.9
Q ss_pred CCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEE-ECCCCHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHHHHHH
Q ss_conf 312220487787899999999998611886469999-5087878999999840342782366788889999999999999
Q gi|254780810|r 175 QRSLIVAPPRTGKTILLQNIAHSIKKNHPECYLIVL-LIDERPEEVTDMQRSVQGEVISSTFDESAARHVQVAEMVIAKA 253 (423)
Q Consensus 175 qr~~i~~~~~~gkt~ll~~ia~~~~~~~~~v~~i~~-ligEr~~ev~e~~~~~~~~vv~st~d~~~~~~~~~a~~a~~~a 253 (423)
T Consensus 110 sNILliGPTG~GKTlla~tLAk~l~vPF~iaDAT~lTEaGYVGeDVE~ii~~L---lq~Ad~d-------------ve~A 173 (411)
T PRK05342 110 SNILLIGPTGSGKTLLAQTLARILNVPFAIADATTLTEAGYVGEDVENILLKL---LQAADYD-------------VEKA 173 (411)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHHCCCEEEEEECEECCCCCCCCCHHHHHHHH---HHHCCCC-------------HHHH
T ss_conf 53899899997788999999998699989986120012674560799999999---9982888-------------9988
Q ss_pred HHHHHCCCCEEEEEECHHHHHHHHHCCCCCCCCCCCC-CCCHHHHHHCHHHHHCCCCC
Q ss_conf 9999779928999816389877620013667776777-52024665046875225777
Q gi|254780810|r 254 KCLVEYGLDVVILLDSITRLCRAYNVLMPSSGKILTG-GVDANALQRPKRFFGAARNI 310 (423)
Q Consensus 254 ~~~~e~G~dVll~~DslTR~ArA~~~~~~~~g~~~~g-g~~~~~l~~~~~~~~~ar~~ 310 (423)
T Consensus 174 e-------~GIV~IDEIDKIarks~--~~s~trDVSgEGVQqaLL---kiiEGt~v~v 219 (411)
T PRK05342 174 Q-------RGIVYIDEIDKIARKSE--NPSITRDVSGEGVQQALL---KILEGTVASV 219 (411)
T ss_pred H-------CCEEEEEEHHHHHHCCC--CCCCCCCCCCHHHHHHHH---HHHCCCEECC
T ss_conf 3-------68288850234542478--888877765124899999---9875871411