HHsearch alignment for GI: 254780810 and conserved domain: PRK05342

>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional.
Probab=96.85  E-value=0.0037  Score=39.94  Aligned_cols=108  Identities=23%  Similarity=0.388  Sum_probs=66.9

Q ss_pred             CCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEE-ECCCCHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHHHHHH
Q ss_conf             312220487787899999999998611886469999-5087878999999840342782366788889999999999999
Q gi|254780810|r  175 QRSLIVAPPRTGKTILLQNIAHSIKKNHPECYLIVL-LIDERPEEVTDMQRSVQGEVISSTFDESAARHVQVAEMVIAKA  253 (423)
Q Consensus       175 qr~~i~~~~~~gkt~ll~~ia~~~~~~~~~v~~i~~-ligEr~~ev~e~~~~~~~~vv~st~d~~~~~~~~~a~~a~~~a  253 (423)
T Consensus       110 sNILliGPTG~GKTlla~tLAk~l~vPF~iaDAT~lTEaGYVGeDVE~ii~~L---lq~Ad~d-------------ve~A  173 (411)
T PRK05342        110 SNILLIGPTGSGKTLLAQTLARILNVPFAIADATTLTEAGYVGEDVENILLKL---LQAADYD-------------VEKA  173 (411)
T ss_pred             CCEEEECCCCCCHHHHHHHHHHHHCCCEEEEEECEECCCCCCCCCHHHHHHHH---HHHCCCC-------------HHHH
T ss_conf             53899899997788999999998699989986120012674560799999999---9982888-------------9988


Q ss_pred             HHHHHCCCCEEEEEECHHHHHHHHHCCCCCCCCCCCC-CCCHHHHHHCHHHHHCCCCC
Q ss_conf             9999779928999816389877620013667776777-52024665046875225777
Q gi|254780810|r  254 KCLVEYGLDVVILLDSITRLCRAYNVLMPSSGKILTG-GVDANALQRPKRFFGAARNI  310 (423)
Q Consensus       254 ~~~~e~G~dVll~~DslTR~ArA~~~~~~~~g~~~~g-g~~~~~l~~~~~~~~~ar~~  310 (423)
T Consensus       174 e-------~GIV~IDEIDKIarks~--~~s~trDVSgEGVQqaLL---kiiEGt~v~v  219 (411)
T PRK05342        174 Q-------RGIVYIDEIDKIARKSE--NPSITRDVSGEGVQQALL---KILEGTVASV  219 (411)
T ss_pred             H-------CCEEEEEEHHHHHHCCC--CCCCCCCCCCHHHHHHHH---HHHCCCEECC
T ss_conf             3-------68288850234542478--888877765124899999---9875871411