HHsearch alignment for GI: 254780810 and conserved domain: PRK07165
>PRK07165 F0F1 ATP synthase subunit alpha; Validated.
Probab=100.00 E-value=0 Score=495.59 Aligned_cols=368 Identities=17% Similarity=0.185 Sum_probs=315.2
Q ss_pred HHHHHCCCEEEEEEEEEEECCCCEEEEECCC------CCCCCCCCCEEECCCCCCCCCCCCCEEEEEEEECCCCCCCCCC
Q ss_conf 8752058748999998540477026750454------8666655604601000012212598799988624688876300
Q gi|254780810|r 43 KVLSGRDVEIIGEGVIEVLQDGFGFLRSPDA------NYLAGPDDIYVSPSQIKSFSLKTGDTVEGSIRAPREGERYFAL 116 (423)
Q Consensus 43 ~~~~~~~g~~~~eGvLEIl~dGyGFLR~~~~------~yl~~~~DiyVs~slir~f~Lr~GD~V~g~~r~~~~~~~~~~L 116 (423)
T Consensus 4 kV~sV~DgIa~V~GL~n~~~---~El~~f~~~~~v~g~~lnleed~vg~vi~g~~~~i~eGd~V~~Tg~i~~VpVG~~lL 80 (507)
T PRK07165 4 KIKSIFDYIVEVKGEFDYQQ---QQVFTLKNNPNVKLFVISATEDTAYLLINNEKAKIKIGDEIIELNNENKVLTSKEYF 80 (507)
T ss_pred EEEEEECEEEEEECCHHHCC---CCEEEECCCCCCEEEEEECCCCCEEEEEECCCCCCCCCCEEEECCCEEEEECCCCCC
T ss_conf 08998144899967702244---866996489962899972553617999987987704899998459857887576644
Q ss_pred EEECCCCCCCHHHHH-----CCCCHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHH
Q ss_conf 022225568878851-----244300020001122343247786532136888998865510231222048778789999
Q gi|254780810|r 117 LKVNAINFDVPERVR-----NKIHFDNLTPLYPDKRFNMELNNPENKDISSRVIDLIAPIGKGQRSLIVAPPRTGKTILL 191 (423)
Q Consensus 117 ~rV~~vnG~~~d~~~-----~~~~f~~l~p~~p~~~i~le~~~~~p~~~~~~~id~~~pig~gqr~~i~~~~~~gkt~ll 191 (423)
T Consensus 81 GRVVD~LG~pidp~~~~~~~~~~~~~~~pie~~Apgi~~R~~V~ePLqTGIkaID~miPIGRGQRELIiGDrqTGKTaIA 160 (507)
T PRK07165 81 GKIIDIDGNIIYPKAANPLKSEKAYQTSSAFNLAHGLMTVQTLNEQLYTGIVAIDLLIPIGKGQRELIIGDRQTGKTHIA 160 (507)
T ss_pred CCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCCCCCEEEEECCCCCCHHHHH
T ss_conf 63688999867898988877654333477455799852367678613434678761355567616777357887788999
Q ss_pred HHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHHC-------CEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEE
Q ss_conf 999999861188646999950878789999998403-------4278236678888999999999999999997799289
Q gi|254780810|r 192 QNIAHSIKKNHPECYLIVLLIDERPEEVTDMQRSVQ-------GEVISSTFDESAARHVQVAEMVIAKAKCLVEYGLDVV 264 (423)
Q Consensus 192 ~~ia~~~~~~~~~v~~i~~ligEr~~ev~e~~~~~~-------~~vv~st~d~~~~~~~~~a~~a~~~a~~~~e~G~dVl 264 (423)
T Consensus 161 ldtI--iNQk~~~V~cIYVAIGQK~s~Va~iv~~L~~~gAm~yTiVV~A~sd~p~-~qylAPy~g~aiAEyf-~~~~dvL 236 (507)
T PRK07165 161 LNTI--INQKNRNVKCIYVAIGQKRENLSRIYETLKEHDALKNTIIIDAPSTSSY-EQYLAPYVAMAHAENI-SYNDDVL 236 (507)
T ss_pred HHHH--HHCCCCCCEEEEEEECCCHHHHHHHHHHHHHCCCHHHEEEEECCCCCCH-HHHHHHHHHHHHHHHH-HCCCCEE
T ss_conf 9999--8454689589999831017799999999987797565257631577827-7777888888788988-6468569
Q ss_pred EEEECHHHHHHHHHCCCCCCCCCCC-CCCCHHHHHHCHHHHHCCCCCCCCCCCEEEEEEEECCCCCCCCHHHHHHHHCCC
Q ss_conf 9981638987762001366777677-752024665046875225777777850012112012676554138898852266
Q gi|254780810|r 265 ILLDSITRLCRAYNVLMPSSGKILT-GGVDANALQRPKRFFGAARNIKEGGSLTIIGTALVDTGSRMDEVIFEEFKGTGN 343 (423)
Q Consensus 265 l~~DslTR~ArA~~~~~~~~g~~~~-gg~~~~~l~~~~~~~~~ar~~~~~Gs~T~~~t~lvetg~~~d~~i~~~~~~~~d 343 (423)
T Consensus 237 iiyDDLTkhA~AyReisLll~rPPGReayPgdvFy~hsrLLERa~kl~g~gSiTaLPIieT~-~gDisayIpTNviSITD 315 (507)
T PRK07165 237 IVFDDLTKHANIYREIALLTNKPVGKEAFPGDIFFAHSKLLERAGKFKNRKSITALPILQTV-DNDITSLISSNIISITD 315 (507)
T ss_pred EEECCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEEEEEC-CCCCCCCCCCCEEEECC
T ss_conf 99647689999999889872799997789960576616888887612699615760178702-78622435664477417
Q ss_pred CEEEEEHHHHHCCCCCCCCCCCCCCCCHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHH--------HHHHHCCCCHHHH
Q ss_conf 07898087884799974053354221015519999999999999996126937899999--------9984028998999
Q gi|254780810|r 344 SEIVLERKIADKRIFPAMDIIKSGTRKEDLLVERQDLQKVFMLRRIVSSMNSSDAIEFL--------IDKLKQTKDNKDF 415 (423)
Q Consensus 344 ~~i~L~r~la~~~~~PAId~~~S~sR~~~~l~~~~~~~~~~~~r~~l~~~~~~e~~~~l--------~~~~~~~~~n~e~ 415 (423)
T Consensus 316 GQI~l~~~Lf~~G~rPAInvglSVSRvG~~aQ~k~~k~vag~l~l~~aqy~el~~fa~f~sdld~~t~~~l~rG~r~~el 395 (507)
T PRK07165 316 GQIVTSSELFAQGKLPAIDIDLSVSRTGSSVQSKNIAKIAKEISKIYRAYKRQLKLSSLDYDLNKETSDLLSKGKMIEKL 395 (507)
T ss_pred CEEEECHHHHHCCCCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
T ss_conf 62885176774698865235700651576888999999863656789999999999865454189999999732899998
Q ss_pred HHH
Q ss_conf 986
Q gi|254780810|r 416 FYS 418 (423)
Q Consensus 416 l~~ 418 (423)
T Consensus 396 lkQ 398 (507)
T PRK07165 396 FIQ 398 (507)
T ss_pred HCC
T ss_conf 667