HHsearch alignment for GI: 254780810 and conserved domain: PRK07721

>PRK07721 fliI flagellum-specific ATP synthase; Validated.
Probab=100.00  E-value=0  Score=596.87  Aligned_cols=325  Identities=22%  Similarity=0.253  Sum_probs=303.7

Q ss_pred             CCCCCCCCCEEECCCCCCCCCCCCCEEEEEEEECCCCCCCCCCEEECCCCCCCHHHHHCCCCHHHCCCCCCCCCCCCCCC
Q ss_conf             86666556046010000122125987999886246888763000222255688788512443000200011223432477
Q gi|254780810|r   74 NYLAGPDDIYVSPSQIKSFSLKTGDTVEGSIRAPREGERYFALLKVNAINFDVPERVRNKIHFDNLTPLYPDKRFNMELN  153 (423)
Q Consensus        74 ~yl~~~~DiyVs~slir~f~Lr~GD~V~g~~r~~~~~~~~~~L~rV~~vnG~~~d~~~~~~~f~~l~p~~p~~~i~le~~  153 (423)
T Consensus        56 EVVgf~~~~v~l~p~~~~~GI~~G~~V~~~g~~~~vpvg~~lLGRV~d~lG~PiDg~~~~~~~~~~~i~~~~pnp~~R~~  135 (435)
T PRK07721         56 EVVGFKDENILLMPYLEAANIAPGSLVEATGEPLRVKVGSGLIGQVVDAFGEPLDGSALPKGLAPVSTDQSPPNPMKRPP  135 (435)
T ss_pred             EEEEECCCEEEEEECCCCCCCCCCCEEEECCCCCEEECCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf             99987698899998768889999999995899766772753224510456543589888887653525589978501479


Q ss_pred             CCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHH-------
Q ss_conf             8653213688899886551023122204877878999999999986118864699995087878999999840-------
Q gi|254780810|r  154 NPENKDISSRVIDLIAPIGKGQRSLIVAPPRTGKTILLQNIAHSIKKNHPECYLIVLLIDERPEEVTDMQRSV-------  226 (423)
Q Consensus       154 ~~~p~~~~~~~id~~~pig~gqr~~i~~~~~~gkt~ll~~ia~~~~~~~~~v~~i~~ligEr~~ev~e~~~~~-------  226 (423)
T Consensus       136 i~e~l~TGIraID~l~tigkGQRigIf~gsGvGKs~Ll~~iar~~~ad----v~V~~liGeR~rEv~efie~~l~~~~l~  211 (435)
T PRK07721        136 IREKMEVGVRAIDSLLTVGKGQRVGIFAGSGVGKSTLMGMIARQTSAD----LNVIALIGERGREVREFIERDLGEEGLK  211 (435)
T ss_pred             CCCCCCCCCEEECCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHCCC----EEEEEEECCCHHHHHHHHHHHHCCCCCC
T ss_conf             886303785652264760357541002689987899999998874488----2589993320289999999752215553


Q ss_pred             CCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHCCCCCCCCCCC-CCCCHHHHHHCHHHHH
Q ss_conf             342782366788889999999999999999977992899981638987762001366777677-7520246650468752
Q gi|254780810|r  227 QGEVISSTFDESAARHVQVAEMVIAKAKCLVEYGLDVVILLDSITRLCRAYNVLMPSSGKILT-GGVDANALQRPKRFFG  305 (423)
Q Consensus       227 ~~~vv~st~d~~~~~~~~~a~~a~~~a~~~~e~G~dVll~~DslTR~ArA~~~~~~~~g~~~~-gg~~~~~l~~~~~~~~  305 (423)
T Consensus       212 rsvvv~atsd~p~~~R~~a~~~a~tiAEyfrd~G~~VLl~~Dsltr~A~A~REisl~~ge~P~~~gYppsvf~~l~~l~E  291 (435)
T PRK07721        212 RSIVVVATSDQPALMRIKGAYTATAIAEYFRDKGQNVMLMMDSVTRVAMAQREIGLAVGEPPTTKGYTPSVFAILPKLLE  291 (435)
T ss_pred             CEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf             23999943889999999999998889999996799789951638899999999998548999866778459988788888


Q ss_pred             CCCCCCCCCCCEEEEEEEECCCCCCCCHHHHHHHHCCCCEEEEEHHHHHCCCCCCCCCCCCCCCCHHHCCCHHHHHHHHH
Q ss_conf             25777777850012112012676554138898852266078980878847999740533542210155199999999999
Q gi|254780810|r  306 AARNIKEGGSLTIIGTALVDTGSRMDEVIFEEFKGTGNSEIVLERKIADKRIFPAMDIIKSGTRKEDLLVERQDLQKVFM  385 (423)
Q Consensus       306 ~ar~~~~~Gs~T~~~t~lvetg~~~d~~i~~~~~~~~d~~i~L~r~la~~~~~PAId~~~S~sR~~~~l~~~~~~~~~~~  385 (423)
T Consensus       292 Rag~~~-~GSIT~i~~V~~~-gdD~~dPi~d~~~~ilDG~ivLsr~la~~g~yPAIDvl~S~SR~~~~i~~~~h~~~a~~  369 (435)
T PRK07721        292 RTGTNE-SGTITAFYTVLVD-GDDMNEPIADTVRGILDGHFVLDRALANKGQFPAVNVLKSISRVMSNIATKEHKEAANR  369 (435)
T ss_pred             HHCCCC-CCCEEEEEEEECC-CCCCCCCCHHHHHHHCCEEEEECHHHHHCCCCCCCCCCCCHHHCCHHHHHHHHHHHHHH
T ss_conf             513799-9745777545047-98666771687877716179986889866999980886166543222302999999999


Q ss_pred             HHHHHHCCCCHHHHHHHHH
Q ss_conf             9999612693789999999
Q gi|254780810|r  386 LRRIVSSMNSSDAIEFLID  404 (423)
Q Consensus       386 ~r~~l~~~~~~e~~~~l~~  404 (423)
T Consensus       370 ~r~~la~y~e~~~li~~g~  388 (435)
T PRK07721        370 FRELLSTYQNSEDLINIGA  388 (435)
T ss_pred             HHHHHHHHHHHHHHHHHHC
T ss_conf             9999998899999999748