HHsearch alignment for GI: 254780810 and conserved domain: PRK07721
>PRK07721 fliI flagellum-specific ATP synthase; Validated.
Probab=100.00 E-value=0 Score=596.87 Aligned_cols=325 Identities=22% Similarity=0.253 Sum_probs=303.7
Q ss_pred CCCCCCCCCEEECCCCCCCCCCCCCEEEEEEEECCCCCCCCCCEEECCCCCCCHHHHHCCCCHHHCCCCCCCCCCCCCCC
Q ss_conf 86666556046010000122125987999886246888763000222255688788512443000200011223432477
Q gi|254780810|r 74 NYLAGPDDIYVSPSQIKSFSLKTGDTVEGSIRAPREGERYFALLKVNAINFDVPERVRNKIHFDNLTPLYPDKRFNMELN 153 (423)
Q Consensus 74 ~yl~~~~DiyVs~slir~f~Lr~GD~V~g~~r~~~~~~~~~~L~rV~~vnG~~~d~~~~~~~f~~l~p~~p~~~i~le~~ 153 (423)
T Consensus 56 EVVgf~~~~v~l~p~~~~~GI~~G~~V~~~g~~~~vpvg~~lLGRV~d~lG~PiDg~~~~~~~~~~~i~~~~pnp~~R~~ 135 (435)
T PRK07721 56 EVVGFKDENILLMPYLEAANIAPGSLVEATGEPLRVKVGSGLIGQVVDAFGEPLDGSALPKGLAPVSTDQSPPNPMKRPP 135 (435)
T ss_pred EEEEECCCEEEEEECCCCCCCCCCCEEEECCCCCEEECCHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 99987698899998768889999999995899766772753224510456543589888887653525589978501479
Q ss_pred CCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHH-------
Q ss_conf 8653213688899886551023122204877878999999999986118864699995087878999999840-------
Q gi|254780810|r 154 NPENKDISSRVIDLIAPIGKGQRSLIVAPPRTGKTILLQNIAHSIKKNHPECYLIVLLIDERPEEVTDMQRSV------- 226 (423)
Q Consensus 154 ~~~p~~~~~~~id~~~pig~gqr~~i~~~~~~gkt~ll~~ia~~~~~~~~~v~~i~~ligEr~~ev~e~~~~~------- 226 (423)
T Consensus 136 i~e~l~TGIraID~l~tigkGQRigIf~gsGvGKs~Ll~~iar~~~ad----v~V~~liGeR~rEv~efie~~l~~~~l~ 211 (435)
T PRK07721 136 IREKMEVGVRAIDSLLTVGKGQRVGIFAGSGVGKSTLMGMIARQTSAD----LNVIALIGERGREVREFIERDLGEEGLK 211 (435)
T ss_pred CCCCCCCCCEEECCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHCCC----EEEEEEECCCHHHHHHHHHHHHCCCCCC
T ss_conf 886303785652264760357541002689987899999998874488----2589993320289999999752215553
Q ss_pred CCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHCCCCCCCCCCC-CCCCHHHHHHCHHHHH
Q ss_conf 342782366788889999999999999999977992899981638987762001366777677-7520246650468752
Q gi|254780810|r 227 QGEVISSTFDESAARHVQVAEMVIAKAKCLVEYGLDVVILLDSITRLCRAYNVLMPSSGKILT-GGVDANALQRPKRFFG 305 (423)
Q Consensus 227 ~~~vv~st~d~~~~~~~~~a~~a~~~a~~~~e~G~dVll~~DslTR~ArA~~~~~~~~g~~~~-gg~~~~~l~~~~~~~~ 305 (423)
T Consensus 212 rsvvv~atsd~p~~~R~~a~~~a~tiAEyfrd~G~~VLl~~Dsltr~A~A~REisl~~ge~P~~~gYppsvf~~l~~l~E 291 (435)
T PRK07721 212 RSIVVVATSDQPALMRIKGAYTATAIAEYFRDKGQNVMLMMDSVTRVAMAQREIGLAVGEPPTTKGYTPSVFAILPKLLE 291 (435)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 23999943889999999999998889999996799789951638899999999998548999866778459988788888
Q ss_pred CCCCCCCCCCCEEEEEEEECCCCCCCCHHHHHHHHCCCCEEEEEHHHHHCCCCCCCCCCCCCCCCHHHCCCHHHHHHHHH
Q ss_conf 25777777850012112012676554138898852266078980878847999740533542210155199999999999
Q gi|254780810|r 306 AARNIKEGGSLTIIGTALVDTGSRMDEVIFEEFKGTGNSEIVLERKIADKRIFPAMDIIKSGTRKEDLLVERQDLQKVFM 385 (423)
Q Consensus 306 ~ar~~~~~Gs~T~~~t~lvetg~~~d~~i~~~~~~~~d~~i~L~r~la~~~~~PAId~~~S~sR~~~~l~~~~~~~~~~~ 385 (423)
T Consensus 292 Rag~~~-~GSIT~i~~V~~~-gdD~~dPi~d~~~~ilDG~ivLsr~la~~g~yPAIDvl~S~SR~~~~i~~~~h~~~a~~ 369 (435)
T PRK07721 292 RTGTNE-SGTITAFYTVLVD-GDDMNEPIADTVRGILDGHFVLDRALANKGQFPAVNVLKSISRVMSNIATKEHKEAANR 369 (435)
T ss_pred HHCCCC-CCCEEEEEEEECC-CCCCCCCCHHHHHHHCCEEEEECHHHHHCCCCCCCCCCCCHHHCCHHHHHHHHHHHHHH
T ss_conf 513799-9745777545047-98666771687877716179986889866999980886166543222302999999999
Q ss_pred HHHHHHCCCCHHHHHHHHH
Q ss_conf 9999612693789999999
Q gi|254780810|r 386 LRRIVSSMNSSDAIEFLID 404 (423)
Q Consensus 386 ~r~~l~~~~~~e~~~~l~~ 404 (423)
T Consensus 370 ~r~~la~y~e~~~li~~g~ 388 (435)
T PRK07721 370 FRELLSTYQNSEDLINIGA 388 (435)
T ss_pred HHHHHHHHHHHHHHHHHHC
T ss_conf 9999998899999999748