HHsearch alignment for GI: 254780810 and conserved domain: PRK08084
>PRK08084 DNA replication initiation factor; Provisional.
Probab=95.59 E-value=0.19 Score=28.71 Aligned_cols=60 Identities=10% Similarity=0.078 Sum_probs=36.4
Q ss_pred HHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHH
Q ss_conf 88899886551023122204877878999999999986118864699995087878999999
Q gi|254780810|r 162 SRVIDLIAPIGKGQRSLIVAPPRTGKTILLQNIAHSIKKNHPECYLIVLLIDERPEEVTDMQ 223 (423)
Q Consensus 162 ~~~id~~~pig~gqr~~i~~~~~~gkt~ll~~ia~~~~~~~~~v~~i~~ligEr~~ev~e~~ 223 (423)
T Consensus 33 ~~al~~~~~~~~~~~l~l~G~~G~GKTHLLqA~~~~~~~~~--~~~~yl~~~~~~~~~~~~l 92 (235)
T PRK08084 33 LAALQNVLRQEHSGYIYLWGREGAGRSHLLHAACAELSQRG--DAVGYVPLDKRAWFVPEVL 92 (235)
T ss_pred HHHHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHHCCC--CCEEEEEHHHHHHHHHHHH
T ss_conf 99999998578987699989999888999999999997079--8579987798665179999