HHsearch alignment for GI: 254780810 and conserved domain: PRK08533
>PRK08533 flagellar accessory protein FlaH; Reviewed.
Probab=98.03 E-value=0.00017 Score=48.71 Aligned_cols=157 Identities=20% Similarity=0.189 Sum_probs=95.3
Q ss_pred HHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHH---------CCE-EEECC---CCC
Q ss_conf 51023122204877878999999999986118864699995087878999999840---------342-78236---678
Q gi|254780810|r 171 IGKGQRSLIVAPPRTGKTILLQNIAHSIKKNHPECYLIVLLIDERPEEVTDMQRSV---------QGE-VISST---FDE 237 (423)
Q Consensus 171 ig~gqr~~i~~~~~~gkt~ll~~ia~~~~~~~~~v~~i~~ligEr~~ev~e~~~~~---------~~~-vv~st---~d~ 237 (423)
T Consensus 21 ip~gs~~li~G~~GtGKsi~~~~~~~~~l~~g--~~~~yis~e~t~~~~i~qm~s~g~di~~~~~~G~l~~i~~~~~~~~ 98 (230)
T PRK08533 21 IPFGSIILIEGDESTGKSILSQRLAYGFLQNG--YSVSYVSSQLTTTEFIKQMMSLGYDINKKLISGKLLYIPVYPLLSG 98 (230)
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHHHHCC--CEEEEEEECCCHHHHHHHHHHCCCCCHHHHHCCCEEEEECCCCCCC
T ss_conf 88984899986899878999999999998789--8699999438999999999986998179975796799961343354
Q ss_pred CHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHCHHHHHCCCCCCCCCCCE
Q ss_conf 88899999999999999999779928999816389877620013667776777520246650468752257777778500
Q gi|254780810|r 238 SAARHVQVAEMVIAKAKCLVEYGLDVVILLDSITRLCRAYNVLMPSSGKILTGGVDANALQRPKRFFGAARNIKEGGSLT 317 (423)
Q Consensus 238 ~~~~~~~~a~~a~~~a~~~~e~G~dVll~~DslTR~ArA~~~~~~~~g~~~~gg~~~~~l~~~~~~~~~ar~~~~~Gs~T 317 (423)
T Consensus 99 ~~~~~~~L~~ll~~----~~~~~~dv-IIIDSlS~l~~~~-------------~~~~~~~~~----~~~lk~l~s~g-kt 155 (230)
T PRK08533 99 NSEKRDFLDKLMNT----RRFYEKDV-VIIDSLSSLVSRD-------------ASEVQIRDL----MAFFKRISSLN-KV 155 (230)
T ss_pred HHHHHHHHHHHHHH----HHHCCCCE-EEEECCHHHHHCC-------------CCHHHHHHH----HHHHHHHHHCC-CE
T ss_conf 04578999999732----66437989-9990531885167-------------778999999----99999998589-88
Q ss_pred EEEEEEECCCCCCCCHHHHHHHHCCCCEEEEEHHHHHC
Q ss_conf 12112012676554138898852266078980878847
Q gi|254780810|r 318 IIGTALVDTGSRMDEVIFEEFKGTGNSEIVLERKIADK 355 (423)
Q Consensus 318 ~~~t~lvetg~~~d~~i~~~~~~~~d~~i~L~r~la~~ 355 (423)
T Consensus 156 IilTv~---p~~~~e~~l~~lrs~aDv~i~L~~~~vGg 190 (230)
T PRK08533 156 IILTAN---PKELPESVLLILRTASTILIRLEVKVFGG 190 (230)
T ss_pred EEEEEC---CCCCCHHHHHHHHEEEEEEEEEEEEECCC
T ss_conf 999956---33136245442041048999987361098