HHsearch alignment for GI: 254780810 and conserved domain: PRK08927
>PRK08927 fliI flagellum-specific ATP synthase; Validated.
Probab=100.00 E-value=0 Score=596.35 Aligned_cols=326 Identities=22% Similarity=0.204 Sum_probs=303.0
Q ss_pred CCCCCCCCCCEEECCCCCCCCCCCCCEEEEEEEECCCCCCCCCCEEECCCCCCCHHHHHCCCCHHH-CCCCCCCCCCCCC
Q ss_conf 486666556046010000122125987999886246888763000222255688788512443000-2000112234324
Q gi|254780810|r 73 ANYLAGPDDIYVSPSQIKSFSLKTGDTVEGSIRAPREGERYFALLKVNAINFDVPERVRNKIHFDN-LTPLYPDKRFNME 151 (423)
Q Consensus 73 ~~yl~~~~DiyVs~slir~f~Lr~GD~V~g~~r~~~~~~~~~~L~rV~~vnG~~~d~~~~~~~f~~-l~p~~p~~~i~le 151 (423)
T Consensus 56 aEVvgf~~~~~~l~~~~~t~Gi~~G~~V~~tg~~~~vpvg~~lLGRVid~lG~PiDg~g~~~~~~~~~pi~~~~p~p~~R 135 (441)
T PRK08927 56 CEVIGFRGDRALLMPFGPLEGVRRGCRAVIANAAAQVRPSAAWLGRVVNALGEPIDGKGPLPQGPVPYPLRAPPPPAHSR 135 (441)
T ss_pred EEEEEECCCEEEEEECCCCCCCCCCCEEEECCCCCEEECCCCCCCCEECCCCCCCCCCCCCCCCCEECCCCCCCCCHHHC
T ss_conf 99998859879999888877889999999899998777786642878776711158999888876004024789684661
Q ss_pred CCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHH-----
Q ss_conf 778653213688899886551023122204877878999999999986118864699995087878999999840-----
Q gi|254780810|r 152 LNNPENKDISSRVIDLIAPIGKGQRSLIVAPPRTGKTILLQNIAHSIKKNHPECYLIVLLIDERPEEVTDMQRSV----- 226 (423)
Q Consensus 152 ~~~~~p~~~~~~~id~~~pig~gqr~~i~~~~~~gkt~ll~~ia~~~~~~~~~v~~i~~ligEr~~ev~e~~~~~----- 226 (423)
T Consensus 136 ~~i~e~L~TGIraID~l~pigrGQRigIfagsGvGKs~Ll~~i~r~~~ad----v~VialIGeRgrEv~efi~~~l~~~~ 211 (441)
T PRK08927 136 ARVGPPLDLGVRALNTFLTCCRGQRLGIFAGSGVGKSVLLSMLARNTDAD----VSVIGLIGERGREVQEFLQDDLGPEG 211 (441)
T ss_pred CCCCCCCCCCHHHHHHHHHHCCCCEEEECCCCCCCHHHHHHHHHHHCCCC----CEEEEECCCCHHHHHHHHHHHHCCCC
T ss_conf 77776310360156533002036466631689998789999998641677----37875226518999999998720245
Q ss_pred --CCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHCCCCCCCCCCC-CCCCHHHHHHCHHH
Q ss_conf --342782366788889999999999999999977992899981638987762001366777677-75202466504687
Q gi|254780810|r 227 --QGEVISSTFDESAARHVQVAEMVIAKAKCLVEYGLDVVILLDSITRLCRAYNVLMPSSGKILT-GGVDANALQRPKRF 303 (423)
Q Consensus 227 --~~~vv~st~d~~~~~~~~~a~~a~~~a~~~~e~G~dVll~~DslTR~ArA~~~~~~~~g~~~~-gg~~~~~l~~~~~~ 303 (423)
T Consensus 212 l~rsvvV~atsd~p~~~R~~a~~~A~aiAEyfrd~G~~VLl~~Dsltr~A~A~REisl~~ge~P~~~gYppsvf~~l~~l 291 (441)
T PRK08927 212 LARSVVVVATSDEPALMRRQAAYLTLAIAEYFRDQGKDVLCLMDSVTRFAMAQREIGLSAGEPPTTKGYTPTVFAELPRL 291 (441)
T ss_pred CCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHH
T ss_conf 22458999637898788799998755899999977996799834602888999999975589998778786178771788
Q ss_pred HHCCCCCCCCCCCEEEEEEEECCCCCCCCHHHHHHHHCCCCEEEEEHHHHHCCCCCCCCCCCCCCCCHHHCCCHHHHHHH
Q ss_conf 52257777778500121120126765541388988522660789808788479997405335422101551999999999
Q gi|254780810|r 304 FGAARNIKEGGSLTIIGTALVDTGSRMDEVIFEEFKGTGNSEIVLERKIADKRIFPAMDIIKSGTRKEDLLVERQDLQKV 383 (423)
Q Consensus 304 ~~~ar~~~~~Gs~T~~~t~lvetg~~~d~~i~~~~~~~~d~~i~L~r~la~~~~~PAId~~~S~sR~~~~l~~~~~~~~~ 383 (423)
T Consensus 292 ~ERag~~~~~GSIT~~~tVl~~-gdD~~dPi~d~~~~ilDGhIvLsr~La~~G~yPAIDvl~S~SR~~~~~~~~~h~~~a 370 (441)
T PRK08927 292 LERAGPGLGEGTITGLFTVLVD-GDDHNEPVADAVRGILDGHIVMERAIAERGRYPAINVLKSVSRTMPGCNDPAELPLV 370 (441)
T ss_pred HHHHCCCCCCCEEECEEEEEEC-CCCCCCCCHHHHHHHCCEEEEECHHHHHCCCCCCCCCCCCHHHCCCCCCCHHHHHHH
T ss_conf 8761357899503030357612-787678724544656364799968798669999808762564424000279999999
Q ss_pred HHHHHHHHCCCCHHHHHHHH
Q ss_conf 99999961269378999999
Q gi|254780810|r 384 FMLRRIVSSMNSSDAIEFLI 403 (423)
Q Consensus 384 ~~~r~~l~~~~~~e~~~~l~ 403 (423)
T Consensus 371 ~~~r~~la~y~e~edli~~G 390 (441)
T PRK08927 371 RRARQLMATYADMEELIRLG 390 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999888999999973