HHsearch alignment for GI: 254780810 and conserved domain: PRK09099

>PRK09099 type III secretion system ATPase; Provisional.
Probab=100.00  E-value=0  Score=606.31  Aligned_cols=364  Identities=22%  Similarity=0.217  Sum_probs=322.5

Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHCCCEEEEEEE------EEEECCCCEEEEECCCCCCCCCCCCEEECCCCCCCCCCCCCE
Q ss_conf             98857666789999999875205874899999------854047702675045486666556046010000122125987
Q gi|254780810|r   26 IENANVMRKQELMFSILKVLSGRDVEIIGEGV------IEVLQDGFGFLRSPDANYLAGPDDIYVSPSQIKSFSLKTGDT   99 (423)
Q Consensus        26 Ie~~~~l~K~eLI~~Il~~~~~~~g~~~~eGv------LEIl~dGyGFLR~~~~~yl~~~~DiyVs~slir~f~Lr~GD~   99 (423)
T Consensus        16 l~~~~~~~------~~G~V~~v~g~~i~~~G~~a~iGelc~i~~~~g~~~-~~aEVvgf~~~~~~l~p~~~~~gi~~G~~   88 (441)
T PRK09099         16 LAALAAVR------RTGKVLEVIGTLLRVSGLDVTLGELCELRQRDGTLL-QRAEVVGFSRDVALLSPFGELGGLSRGTR   88 (441)
T ss_pred             HHCCCCCE------EEEEEEEEECCEEEEEECCCCCCCEEEEECCCCCCC-CEEEEEEEECCEEEEEECCCCCCCCCCCE
T ss_conf             50477530------466999997819999817888788699984899711-02589998689899998878667889999


Q ss_pred             EEEEEEECCCCCCCCCCEEECCCCCCCHHHHHCCCCHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEE
Q ss_conf             99988624688876300022225568878851244300020001122343247786532136888998865510231222
Q gi|254780810|r  100 VEGSIRAPREGERYFALLKVNAINFDVPERVRNKIHFDNLTPLYPDKRFNMELNNPENKDISSRVIDLIAPIGKGQRSLI  179 (423)
Q Consensus       100 V~g~~r~~~~~~~~~~L~rV~~vnG~~~d~~~~~~~f~~l~p~~p~~~i~le~~~~~p~~~~~~~id~~~pig~gqr~~i  179 (423)
T Consensus        89 V~~tg~~~~VpvG~~lLGRVvD~lG~PlDg~g~i~~~~~~pi~~~~p~p~~R~~i~epl~TGIraID~l~pigrGQR~gI  168 (441)
T PRK09099         89 VIGLGRPLSVPVGPALLGRVIDGLGEPIDGRGPLDCDTLVPVIAAPPDPMSRRMIEAPLPTGVRIVDGLMTLGEGQRMGI  168 (441)
T ss_pred             EEECCCCCEEECCCCCCCCEECCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCEEEE
T ss_conf             99789963787470414888567765568997888765887516798820025778741278562236678034763300


Q ss_pred             ECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHH-------CCEEEECCCCCCHHHHHHHHHHHHHH
Q ss_conf             04877878999999999986118864699995087878999999840-------34278236678888999999999999
Q gi|254780810|r  180 VAPPRTGKTILLQNIAHSIKKNHPECYLIVLLIDERPEEVTDMQRSV-------QGEVISSTFDESAARHVQVAEMVIAK  252 (423)
Q Consensus       180 ~~~~~~gkt~ll~~ia~~~~~~~~~v~~i~~ligEr~~ev~e~~~~~-------~~~vv~st~d~~~~~~~~~a~~a~~~  252 (423)
T Consensus       169 f~gsGvGKstLl~~iar~~~~d----v~V~~lIGeRgrEv~efi~~~~~~~~l~~svvv~atsd~~~~~R~~a~~~a~ai  244 (441)
T PRK09099        169 FAPAGVGKSTLMGMFARGTQCD----VNVIALIGERGREVREFIELILGEDGMARSVVVCATSDRSSIERAKAAYAATAI  244 (441)
T ss_pred             ECCCCCCHHHHHHHHHHHHCCC----CEEEEECCCCHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHH
T ss_conf             1589887899999898751368----616886372138999999997624563201798615889988999987750157


Q ss_pred             HHHHHHCCCCEEEEEECHHHHHHHHHCCCCCCCCCCC-CCCCHHHHHHCHHHHHCCCCCCCCCCCEEEEEEEECCCCCCC
Q ss_conf             9999977992899981638987762001366777677-752024665046875225777777850012112012676554
Q gi|254780810|r  253 AKCLVEYGLDVVILLDSITRLCRAYNVLMPSSGKILT-GGVDANALQRPKRFFGAARNIKEGGSLTIIGTALVDTGSRMD  331 (423)
Q Consensus       253 a~~~~e~G~dVll~~DslTR~ArA~~~~~~~~g~~~~-gg~~~~~l~~~~~~~~~ar~~~~~Gs~T~~~t~lvetg~~~d  331 (423)
T Consensus       245 AEyfrd~Gk~VLl~~DslTr~A~A~REisl~~gepP~~~gYp~~vf~~l~~l~ERag~~~-~GSITai~tVl~~-~dd~~  322 (441)
T PRK09099        245 AEYFRDRGKRVLLMMDSLTRFARAQREIGLAAGEPPARRGFPPSVFAELPRLLERAGMGE-HGSITALYTVLAE-DDSGS  322 (441)
T ss_pred             HHHHHHCCCCEEEEECCHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHCCCC-CCCEEEEEEEECC-CCCCC
T ss_conf             889986698189970767799999999998657999856677209988789887403789-9855344445506-88777


Q ss_pred             CHHHHHHHHCCCCEEEEEHHHHHCCCCCCCCCCCCCCCCHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHH
Q ss_conf             13889885226607898087884799974053354221015519999999999999996126937899999
Q gi|254780810|r  332 EVIFEEFKGTGNSEIVLERKIADKRIFPAMDIIKSGTRKEDLLVERQDLQKVFMLRRIVSSMNSSDAIEFL  402 (423)
Q Consensus       332 ~~i~~~~~~~~d~~i~L~r~la~~~~~PAId~~~S~sR~~~~l~~~~~~~~~~~~r~~l~~~~~~e~~~~l  402 (423)
T Consensus       323 ~pi~d~~~si~DGhivLsr~la~~g~yPAIdvl~SvSR~~~~~~~~~~~~~a~~~r~~la~y~e~e~li~~  393 (441)
T PRK09099        323 DPIAEEVRGILDGHMILSREIAARNQYPAIDVLGSLSRVMPQVVPREHVQAAGRLRRLLAKHREVETLLQV  393 (441)
T ss_pred             CCHHHHHHHHCCEEEEECHHHHHCCCCCCCCCCCCHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf             87678777670638998587886699987177415542443441599999999999999989999999973