HHsearch alignment for GI: 254780810 and conserved domain: PRK11054
>PRK11054 helD DNA helicase IV; Provisional.
Probab=91.84 E-value=0.34 Score=27.01 Aligned_cols=69 Identities=23% Similarity=0.361 Sum_probs=39.9
Q ss_pred HHCCCCEEEECCCCCCHHHHHHH-HHHHHHHCC--CCCEEEEEECCCCHHHHHHHHHHHCC--EEEECCCCCCH
Q ss_conf 51023122204877878999999-999986118--86469999508787899999984034--27823667888
Q gi|254780810|r 171 IGKGQRSLIVAPPRTGKTILLQN-IAHSIKKNH--PECYLIVLLIDERPEEVTDMQRSVQG--EVISSTFDESA 239 (423)
Q Consensus 171 ig~gqr~~i~~~~~~gkt~ll~~-ia~~~~~~~--~~v~~i~~ligEr~~ev~e~~~~~~~--~vv~st~d~~~ 239 (423)
T Consensus 206 i~~ed~~LVLAGAGSGKT~vLt~RiayLI~~g~~~P~~ILaLTFT~kAA~EMreRl~~~lg~~~v~~~TFHSla 279 (684)
T PRK11054 206 VNGEDSLLVLAGAGSGKTSVLVARAGWLLARGQAQPEQILLLAFGRKAAEEMDERIRERLGTEDITARTFHALA 279 (684)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHHHHHHCCCCCHHHEEEEECCHHHHHHHHHHHHHHCCCCCEEEEEHHHHH
T ss_conf 74799648983389970779999999999759998667786863499999999999975499983786599999