HHsearch alignment for GI: 254780810 and conserved domain: PRK11823
>PRK11823 DNA repair protein RadA; Provisional.
Probab=96.16 E-value=0.098 Score=30.54 Aligned_cols=173 Identities=20% Similarity=0.274 Sum_probs=91.0
Q ss_pred CCCCHHHHHHHHHH--HHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHH-----------
Q ss_conf 53213688899886--55102312220487787899999999998611886469999508787899999-----------
Q gi|254780810|r 156 ENKDISSRVIDLIA--PIGKGQRSLIVAPPRTGKTILLQNIAHSIKKNHPECYLIVLLIDERPEEVTDM----------- 222 (423)
Q Consensus 156 ~p~~~~~~~id~~~--pig~gqr~~i~~~~~~gkt~ll~~ia~~~~~~~~~v~~i~~ligEr~~ev~e~----------- 222 (423)
T Consensus 70 ~R~~Tgi~ElDRVLGGGlV~GS~iLlgGePGIGKSTLlLQ~a~~la~~~---~vLYv-SGEES~~Qik~RA~RLg~~~~~ 145 (454)
T PRK11823 70 PRISTGIGELDRVLGGGLVPGSVVLIGGDPGIGKSTLLLQVAAALAAGG---KVLYV-SGEESLQQIKLRAERLGLPSDN 145 (454)
T ss_pred CCCCCCCHHHHHCCCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCC---CEEEE-CCCHHHHHHHHHHHHHCCCCCC
T ss_conf 5323785566522158720664899507998889999999999985599---57998-1501578999999975888887
Q ss_pred ---------------HHHHCCE---------EEECCCCCCHHHHHHHHHHHH---HHHH---------------------
Q ss_conf ---------------9840342---------782366788889999999999---9999---------------------
Q gi|254780810|r 223 ---------------QRSVQGE---------VISSTFDESAARHVQVAEMVI---AKAK--------------------- 254 (423)
Q Consensus 223 ---------------~~~~~~~---------vv~st~d~~~~~~~~~a~~a~---~~a~--------------------- 254 (423)
T Consensus 146 l~l~~et~l~~Il~~i~~~~P~~lIIDSIQT~~~~~~~s~pGsvsQVre~a~~L~~~AK~~~i~~~lVGHVTKdG~iAGP 225 (454)
T PRK11823 146 LYLLAETNLEDILATIEEEKPDLVVIDSIQTMYSPELESAPGSVSQVRECAAELTRLAKQSGIAVFLVGHVTKEGAIAGP 225 (454)
T ss_pred CEEEECCCHHHHHHHHHHHCCCEEEEECHHEEEECCCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCCCC
T ss_conf 37885368999999998609988999431115415667789978999999999999997449828999977267764661
Q ss_pred HHHHCCCCEEEEEEC----HHHHHHHHHCCCCCCCCC----C-CCCCCHHHHHHCHHHHHCCCCCCCCCCCEEEEEEEEC
Q ss_conf 999779928999816----389877620013667776----7-7752024665046875225777777850012112012
Q gi|254780810|r 255 CLVEYGLDVVILLDS----ITRLCRAYNVLMPSSGKI----L-TGGVDANALQRPKRFFGAARNIKEGGSLTIIGTALVD 325 (423)
Q Consensus 255 ~~~e~G~dVll~~Ds----lTR~ArA~~~~~~~~g~~----~-~gg~~~~~l~~~~~~~~~ar~~~~~Gs~T~~~t~lve 325 (423)
T Consensus 226 kvLEHmVDtVl~fEGd~~~~~RiLR~~KNRFG~t~EiGvFeM~~~GL~~v--~nPS~~Fls~~~~~~~Gs---~i~~~~E 300 (454)
T PRK11823 226 RVLEHMVDTVLYFEGDRHSRFRILRAVKNRFGATNEIGVFEMTEKGLREV--SNPSELFLSERDENVPGS---AVTVTME 300 (454)
T ss_pred HHHHHHHCEEEEECCCCCCCCEEEEEECCCCCCCCEEEEEEECCCCCEEC--CCHHHHHHHCCCCCCCCE---EEEEEEE
T ss_conf 45222010468751576655024563124677666058998616884566--887799862688787750---7998885
Q ss_pred CCCCCCCHHHHHHHHC
Q ss_conf 6765541388988522
Q gi|254780810|r 326 TGSRMDEVIFEEFKGT 341 (423)
Q Consensus 326 tg~~~d~~i~~~~~~~ 341 (423)
T Consensus 301 -GsR---pllvEvQAL 312 (454)
T PRK11823 301 -GTR---PLLVEIQAL 312 (454)
T ss_pred -ECC---CHHHHHHHH
T ss_conf -064---240103446