HHsearch alignment for GI: 254780810 and conserved domain: PRK12678
>PRK12678 transcription termination factor Rho; Provisional.
Probab=100.00 E-value=0 Score=936.38 Aligned_cols=366 Identities=57% Similarity=0.957 Sum_probs=358.8
Q ss_pred EEEEEEEEEEECCCCEEEEECCCCCCCCCCCCEEECCCCCCCCCCCCCEEEEEEEECCCCC------CCCCCEEECCCCC
Q ss_conf 4899999854047702675045486666556046010000122125987999886246888------7630002222556
Q gi|254780810|r 51 EIIGEGVIEVLQDGFGFLRSPDANYLAGPDDIYVSPSQIKSFSLKTGDTVEGSIRAPREGE------RYFALLKVNAINF 124 (423)
Q Consensus 51 ~~~~eGvLEIl~dGyGFLR~~~~~yl~~~~DiyVs~slir~f~Lr~GD~V~g~~r~~~~~~------~~~~L~rV~~vnG 124 (423)
T Consensus 288 LvPVaGildi~-d~y~FlRt--~~ylp~~~DvYvs~~qir~~~Lr~GD~v~G~vr~p~ege~~~~~~k~~~L~~v~~vNg 364 (667)
T PRK12678 288 LVPVAGILDVL-DNYAFVRT--SGYLPGPNDVYVSMNQVRKNGLRRGDAITGAVRAPREGEQRNQRQKFNPLVRLDSVNG 364 (667)
T ss_pred EEEEEEEEEEE-ECCEEEEC--CCCCCCCCCEEECHHHHHHHCCCCCCEEEEEECCCCCCCCCCHHHCCCCCEEEHHCCC
T ss_conf 24521178974-06116634--8988998775478999987199988987872018986555440012201045224179
Q ss_pred CCHHHHHCCCCHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCC
Q ss_conf 88788512443000200011223432477865321368889988655102312220487787899999999998611886
Q gi|254780810|r 125 DVPERVRNKIHFDNLTPLYPDKRFNMELNNPENKDISSRVIDLIAPIGKGQRSLIVAPPRTGKTILLQNIAHSIKKNHPE 204 (423)
Q Consensus 125 ~~~d~~~~~~~f~~l~p~~p~~~i~le~~~~~p~~~~~~~id~~~pig~gqr~~i~~~~~~gkt~ll~~ia~~~~~~~~~ 204 (423)
T Consensus 365 ~~~e~~~~r~~F~~Ltp~~P~erl~le~~---~~~~t~RiiDl~~PiGkGQRgLIVapPkaGKT~ll~~ia~ai~~N~pe 441 (667)
T PRK12678 365 MSPEEAKKRPEFGKLTPLYPNERLRLETE---PNKLTTRVIDLIMPIGKGQRGLIVSPPKAGKTTILQDIANAITTNNPE 441 (667)
T ss_pred CCHHHHCCCCCCCCCCCCCCCCEEECCCC---CCCCCHHHHEEECCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHCCCC
T ss_conf 69899607675245777898642233467---765322230111356788454675799787259999999999856997
Q ss_pred CEEEEEECCCCHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHCCCCCC
Q ss_conf 46999950878789999998403427823667888899999999999999999779928999816389877620013667
Q gi|254780810|r 205 CYLIVLLIDERPEEVTDMQRSVQGEVISSTFDESAARHVQVAEMVIAKAKCLVEYGLDVVILLDSITRLCRAYNVLMPSS 284 (423)
Q Consensus 205 v~~i~~ligEr~~ev~e~~~~~~~~vv~st~d~~~~~~~~~a~~a~~~a~~~~e~G~dVll~~DslTR~ArA~~~~~~~~ 284 (423)
T Consensus 442 ~~l~vlLiDERPEEVTdm~r~v~geViaStfD~~~~~H~~vael~iErAkRlvE~g~DVvillDSiTRLaRAyN~~~p~s 521 (667)
T PRK12678 442 CHLMVVLVDERPEEVTDMQRSVKGEVIASTFDRPPSDHTTVAELAIERAKRLVELGHDVVVLLDSITRLGRAYNLAAPAS 521 (667)
T ss_pred EEEEEEECCCCCHHHHHHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEECHHHHHHHHHHCCCCCC
T ss_conf 28999973788515667664046069986688988889999999999999987569977999640668888760446998
Q ss_pred CCCCCCCCCHHHHHHCHHHHHCCCCCCCCCCCEEEEEEEECCCCCCCCHHHHHHHHCCCCEEEEEHHHHHCCCCCCCCCC
Q ss_conf 77677752024665046875225777777850012112012676554138898852266078980878847999740533
Q gi|254780810|r 285 GKILTGGVDANALQRPKRFFGAARNIKEGGSLTIIGTALVDTGSRMDEVIFEEFKGTGNSEIVLERKIADKRIFPAMDII 364 (423)
Q Consensus 285 g~~~~gg~~~~~l~~~~~~~~~ar~~~~~Gs~T~~~t~lvetg~~~d~~i~~~~~~~~d~~i~L~r~la~~~~~PAId~~ 364 (423)
T Consensus 522 Gr~lsGGvD~~Al~~PKrffGAARnie~GGSLTIlaTaLveTGSrmDevIfeEFKGTGNmEl~LdR~la~~RifPAidi~ 601 (667)
T PRK12678 522 GRILSGGVDSTALYPPKRFFGAARNIENGGSLTIIATALVETGSTMDTVIFEEFKGTGNAELKLDRKIADKRVFPAVDVN 601 (667)
T ss_pred CCCCCCCCCHHHHHCHHHHHHHHHCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHCCCCCEEEEECHHHHHCCCCCCCCCC
T ss_conf 77346764867660107776777524767447675445530465067889988537664288862335645565311344
Q ss_pred CCCCCCHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCCCHHHHHHHHHCC
Q ss_conf 5422101551999999999999999612693789999999840289989999864305
Q gi|254780810|r 365 KSGTRKEDLLVERQDLQKVFMLRRIVSSMNSSDAIEFLIDKLKQTKDNKDFFYSMNKQ 422 (423)
Q Consensus 365 ~S~sR~~~~l~~~~~~~~~~~~r~~l~~~~~~e~~~~l~~~~~~~~~n~e~l~~~~k~ 422 (423)
T Consensus 602 ~SgTR~eelLl~~~e~~~~~~lRr~l~~~~~~~a~e~l~~~l~~t~~N~efl~~~~kt 659 (667)
T PRK12678 602 PSGTRKEELLLSPDELAIVHKLRRVLSGLDSQQAIELLLSRLKKTKSNYEFLMQVQKT 659 (667)
T ss_pred CCCCCHHHHCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHC
T ss_conf 5775067653799999999999998725998999999999986179889999998751