HHsearch alignment for GI: 254780810 and conserved domain: PRK13643
>PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional.
Probab=96.44 E-value=0.019 Score=35.24 Aligned_cols=204 Identities=20% Similarity=0.264 Sum_probs=89.7
Q ss_pred HHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCC--CHHHHHHHHHHHCCEEEECC----CCCCHH
Q ss_conf 886551023122204877878999999999986118864699995087--87899999984034278236----678888
Q gi|254780810|r 167 LIAPIGKGQRSLIVAPPRTGKTILLQNIAHSIKKNHPECYLIVLLIDE--RPEEVTDMQRSVQGEVISST----FDESAA 240 (423)
Q Consensus 167 ~~~pig~gqr~~i~~~~~~gkt~ll~~ia~~~~~~~~~v~~i~~ligE--r~~ev~e~~~~~~~~vv~st----~d~~~~ 240 (423)
T Consensus 25 Isl~I~~Ge~vaiiG~nGsGKSTLl~~l~Gll~p~~G~V~~~~~~i~~~~~~~~~~~~~~~v-G~VfQ~p~~ql~~~tV~ 103 (288)
T PRK13643 25 IDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKPVRKKV-GVVFQFPESQLFEETVL 103 (288)
T ss_pred EEEEECCCCEEEEECCCCCHHHHHHHHHHCCCCCCCCEEEECCEECCCCCHHHHHHHHHHCE-EEEEECCCCCCCHHHHH
T ss_conf 36798599899999999947999999997488888856999999856877354479877517-99997773202433699
Q ss_pred HHHHHHH--HH--HHHHHHHHHCCCCEEEEEECH-------------HHHHHHHHCCCCC----CCCCCCCCCCHHHHHH
Q ss_conf 9999999--99--999999997799289998163-------------8987762001366----7776777520246650
Q gi|254780810|r 241 RHVQVAE--MV--IAKAKCLVEYGLDVVILLDSI-------------TRLCRAYNVLMPS----SGKILTGGVDANALQR 299 (423)
Q Consensus 241 ~~~~~a~--~a--~~~a~~~~e~G~dVll~~Dsl-------------TR~ArA~~~~~~~----~g~~~~gg~~~~~l~~ 299 (423)
T Consensus 104 e~vafg~~n~g~~~~e~~~~v~~~l~~vgl~d~~~~r~p~~LSGGqkqRvaiA~aLa~~P~vLlLDE-PTs~LDp~~~~~ 182 (288)
T PRK13643 104 KDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIAGILAMEPEVLVLDE-PTAGLDPKARIE 182 (288)
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHCCCHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEC-CCCCCCHHHHHH
T ss_conf 9999899986999899999999999975993667527976399999999999999974999999958-855589999999
Q ss_pred CHHHHHCCCCCCCCCCCEEEEEEEECCCCCCCCH--HHHHHHHCCCCEEEEEHHHHHCCCCCCCCCCCCCCCCHHH-CCC
Q ss_conf 4687522577777785001211201267655413--8898852266078980878847999740533542210155-199
Q gi|254780810|r 300 PKRFFGAARNIKEGGSLTIIGTALVDTGSRMDEV--IFEEFKGTGNSEIVLERKIADKRIFPAMDIIKSGTRKEDL-LVE 376 (423)
Q Consensus 300 ~~~~~~~ar~~~~~Gs~T~~~t~lvetg~~~d~~--i~~~~~~~~d~~i~L~r~la~~~~~PAId~~~S~sR~~~~-l~~ 376 (423)
T Consensus 183 i~~ll~~l---~~~G-~Ti----I~vt-Hd~~~v~~~adrvivl~~G~Iv~~Gtp~e--vf~~~~~------l~~~~l~~ 245 (288)
T PRK13643 183 MMQLFESI---HQSG-QTV----VLVT-HLMDDVADYADYVYLLEKGHIISCGTPSD--VFQEVDF------LKAHELGV 245 (288)
T ss_pred HHHHHHHH---HHCC-CEE----EEEC-CCHHHHHHHCCEEEEEECCEEEEECCHHH--HHCCHHH------HHHCCCCC
T ss_conf 99999999---9539-999----9986-08999999799999998999999878899--8669999------99769999
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 9999999999999
Q gi|254780810|r 377 RQDLQKVFMLRRI 389 (423)
Q Consensus 377 ~~~~~~~~~~r~~ 389 (423)
T Consensus 246 P~~~~l~~~L~~~ 258 (288)
T PRK13643 246 PKATHFADQLQKT 258 (288)
T ss_pred CHHHHHHHHHHHC
T ss_conf 8499999999976