HHsearch alignment for GI: 254780810 and conserved domain: PRK13900
>PRK13900 type IV secretion system ATPase VirB11; Provisional.
Probab=94.77 E-value=0.21 Score=28.31 Aligned_cols=105 Identities=10% Similarity=0.018 Sum_probs=57.5
Q ss_pred CCCCCEEEEEEEECCCCCCCCCCEEECCCCCCCHHHHHCCCCHHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHC
Q ss_conf 12598799988624688876300022225568878851244300020001122343247786532136888998865510
Q gi|254780810|r 94 LKTGDTVEGSIRAPREGERYFALLKVNAINFDVPERVRNKIHFDNLTPLYPDKRFNMELNNPENKDISSRVIDLIAPIGK 173 (423)
Q Consensus 94 Lr~GD~V~g~~r~~~~~~~~~~L~rV~~vnG~~~d~~~~~~~f~~l~p~~p~~~i~le~~~~~p~~~~~~~id~~~pig~ 173 (423)
T Consensus 82 Lp~G~Rv~~v~pp~~~~g~~~ltIRk~~~~~~tl~dl~~~G~~~~~~~~~~~~~--~~~~l-~~~~~~~~~~~fL~~aV~ 158 (332)
T PRK13900 82 LPNGYRIQIVFPPACEIGQIIYSIRKPSGMQLTLDDYEKMGAFDETATESLVDE--DDVIL-NELLAEKKIKEFLEHAVI 158 (332)
T ss_pred ECCCCEEEEEECCCCCCCCCEEEEECCCCCCCCHHHHHHCCCCCHHHHHCCCCH--HHHHH-HHHHHHHHHHHHHHHHHH
T ss_conf 189846899837831599847999788888899999986498665554201341--56778-876410579999999986
Q ss_pred CCC-EEEECCCCCCHHHHHHHHHHHHHHC
Q ss_conf 231-2220487787899999999998611
Q gi|254780810|r 174 GQR-SLIVAPPRTGKTILLQNIAHSIKKN 201 (423)
Q Consensus 174 gqr-~~i~~~~~~gkt~ll~~ia~~~~~~ 201 (423)
T Consensus 159 ~r~NilI~G~TgSGKTTll~aL~~~ip~~ 187 (332)
T PRK13900 159 SKKNIIISGGTSTGKTTFTNAALREIPAI 187 (332)
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHCCCCC
T ss_conf 48719998888988999999998358953