HHsearch alignment for GI: 254780810 and conserved domain: TIGR02237
>TIGR02237 recomb_radB DNA repair and recombination protein RadB; InterPro: IPR011939 This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA, eukaryotic RAD51 (IPR011941 from INTERPRO) and DMC1 (IPR011940 from INTERPRO), and archaeal RadA (IPR011938 from INTERPRO) ,, .; GO: 0003684 damaged DNA binding, 0005524 ATP binding, 0008094 DNA-dependent ATPase activity, 0006281 DNA repair, 0006310 DNA recombination.
Probab=96.95 E-value=0.0041 Score=39.60 Aligned_cols=150 Identities=19% Similarity=0.234 Sum_probs=80.8
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEE-----ECCCCHHHHHH-----HHHHHCCEEE--ECCCCCCHHHHHH
Q ss_conf 2220487787899999999998611886469999-----50878789999-----9984034278--2366788889999
Q gi|254780810|r 177 SLIVAPPRTGKTILLQNIAHSIKKNHPECYLIVL-----LIDERPEEVTD-----MQRSVQGEVI--SSTFDESAARHVQ 244 (423)
Q Consensus 177 ~~i~~~~~~gkt~ll~~ia~~~~~~~~~v~~i~~-----ligEr~~ev~e-----~~~~~~~~vv--~st~d~~~~~~~~ 244 (423)
T Consensus 15 TQiYGp~G~GKTn~c~~~a~~a~~~Gk--~v~YiDTEGGLS~ER~~q~~~~~~~D~e~~~~~~iv~~~~~f~eQ~----- 87 (223)
T TIGR02237 15 TQIYGPPGSGKTNICLILAVNAARQGK--KVVYIDTEGGLSPERFKQIAEDRALDPERVLSNVIVFEVFDFDEQE----- 87 (223)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCC--CEEEEECCCCCHHHHHHHHHHCCCCCHHHHHCCEEEECCCCHHHHH-----
T ss_conf 898758998678999999999986189--5899962898328999998630588988884153552353567899-----
Q ss_pred HHHHHHHHHHHHHHCC--CCEEEEEECHHHHHHHHHCCCC-CCCCCCCCCCCHHHHHHCHHHHHCCCCCCCCCCCEEE--
Q ss_conf 9999999999999779--9289998163898776200136-6777677752024665046875225777777850012--
Q gi|254780810|r 245 VAEMVIAKAKCLVEYG--LDVVILLDSITRLCRAYNVLMP-SSGKILTGGVDANALQRPKRFFGAARNIKEGGSLTII-- 319 (423)
Q Consensus 245 ~a~~a~~~a~~~~e~G--~dVll~~DslTR~ArA~~~~~~-~~g~~~~gg~~~~~l~~~~~~~~~ar~~~~~Gs~T~~-- 319 (423)
T Consensus 88 ---~ai~~~~~~~~~~G~~~~LvVvDs~t~~YRle~~~d~nk~~-----~~~~~l~~Ql~~Ll~lArk~~----~AVviT 155 (223)
T TIGR02237 88 ---VAIQKTSKLIDRDGDKADLVVVDSFTALYRLERSDDRNKQI-----SLNRELARQLTLLLSLARKKD----LAVVIT 155 (223)
T ss_pred ---HHHHHHHHHHHCCCCEEEEEEEECCHHHHHHCCCCCCHHHH-----HHHHHHHHHHHHHHHHHHHCC----CCEEEE
T ss_conf ---99999999986068833148881533454202578602567-----999999999999999987649----978997
Q ss_pred ---EEEEECCCCCCCCHHHHHHHHCCCCE
Q ss_conf ---11201267655413889885226607
Q gi|254780810|r 320 ---GTALVDTGSRMDEVIFEEFKGTGNSE 345 (423)
Q Consensus 320 ---~t~lvetg~~~d~~i~~~~~~~~d~~ 345 (423)
T Consensus 156 NQvy~d~~~gG~~~~~P~GG~~L~h~~K~ 184 (223)
T TIGR02237 156 NQVYTDVNNGGSETLRPLGGHLLEHWSKV 184 (223)
T ss_pred EEEEEEECCCCCCEEEECCCHHHHHHHCE
T ss_conf 11588637797320100331134311021