HHsearch alignment for GI: 254780810 and conserved domain: TIGR02546
>TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase; InterPro: IPR013380 Proteins in this entry are found in a variety of bacteria, and are predicted to be ATPases involved in type III secretion systems. One example is YscN (P40290 from SWISSPROT) from Yersinia enterocolitica, which is thought to energise the YOP (Yersinia outer protein) secretion system .; GO: 0046961 hydrogen ion transporting ATPase activity rotational mechanism, 0030254 protein secretion by the type III secretion system.
Probab=100.00 E-value=0 Score=754.12 Aligned_cols=354 Identities=22% Similarity=0.231 Sum_probs=320.3
Q ss_pred EEEEEEEEC----CCCEEEEECCCCCCCCCCCCEEECCCCCCCCCCCCCEEEEEEEECCCCCCCCCCEEECCCCCCCHHH
Q ss_conf 999985404----7702675045486666556046010000122125987999886246888763000222255688788
Q gi|254780810|r 54 GEGVIEVLQ----DGFGFLRSPDANYLAGPDDIYVSPSQIKSFSLKTGDTVEGSIRAPREGERYFALLKVNAINFDVPER 129 (423)
Q Consensus 54 ~eGvLEIl~----dGyGFLR~~~~~yl~~~~DiyVs~slir~f~Lr~GD~V~g~~r~~~~~~~~~~L~rV~~vnG~~~d~ 129 (423)
T Consensus 25 ~vGELC~i~~nW~~~~~~~~A---EVVGf~~~~alLsPlg~~~G~~~g~~V~p~g~~~~i~vGe~LLGRVlDG~GrPlD~ 101 (430)
T TIGR02546 25 RVGELCLIKRNWPRDPSQLLA---EVVGFTGDEALLSPLGELSGISPGSEVIPTGRPLSIRVGEALLGRVLDGFGRPLDG 101 (430)
T ss_pred EEEEEEEEECCCCCCCCCCEE---EEEEEECCEEEEECCCCCCCCCCCCEEEECCCCEEEEECCCCCCEEECCCCCCCCC
T ss_conf 674034552237898566137---89987278677602665332565667862584202210600032004565770378
Q ss_pred HHCCCCHHH-------CCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCC
Q ss_conf 512443000-------2000112234324778653213688899886551023122204877878999999999986118
Q gi|254780810|r 130 VRNKIHFDN-------LTPLYPDKRFNMELNNPENKDISSRVIDLIAPIGKGQRSLIVAPPRTGKTILLQNIAHSIKKNH 202 (423)
Q Consensus 130 ~~~~~~f~~-------l~p~~p~~~i~le~~~~~p~~~~~~~id~~~pig~gqr~~i~~~~~~gkt~ll~~ia~~~~~~~ 202 (423)
T Consensus 102 ~~~~~~~~~~Qvt~~~~p~~a~pP~P~~R~~I~~PL~tGvRaiDGlLTcG~GQRiGIFA~aG~GKSTLL~~i~~g~~AD- 180 (430)
T TIGR02546 102 KGELPAGEIRQVTGETRPLDADPPPPMSRQPIDQPLPTGVRAIDGLLTCGEGQRIGIFAGAGVGKSTLLGMIARGASAD- 180 (430)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHHHHHHHCCCCCC-
T ss_conf 8878755643024645765678104876753346510146675434403665305787088861668999986189887-
Q ss_pred CCCEEEEEECCCCHHHHHHHHHHH-------CCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHH
Q ss_conf 864699995087878999999840-------3427823667888899999999999999999779928999816389877
Q gi|254780810|r 203 PECYLIVLLIDERPEEVTDMQRSV-------QGEVISSTFDESAARHVQVAEMVIAKAKCLVEYGLDVVILLDSITRLCR 275 (423)
Q Consensus 203 ~~v~~i~~ligEr~~ev~e~~~~~-------~~~vv~st~d~~~~~~~~~a~~a~~~a~~~~e~G~dVll~~DslTR~Ar 275 (423)
T Consensus 181 ---v~V~ALIGERGREVREFiE~~lg~e~~~RsVlVvsTSDrss~eR~~AAy~ATaIAEYFRDQGk~VlLmmDSlTRfAR 257 (430)
T TIGR02546 181 ---VNVIALIGERGREVREFIEHLLGEEGRKRSVLVVSTSDRSSLERLKAAYTATAIAEYFRDQGKRVLLMMDSLTRFAR 257 (430)
T ss_pred ---EEEEEECCCCCHHHHHHHHHCCCHHHCCCEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCEEEEEEECHHHHHH
T ss_conf ---89986027876047888752078305242489960798667999999878879999999739907988402779999
Q ss_pred HHHCCCCCCCCCCC-CCCCHHHHHHCHHHHHCCCCCCCCCCCEEEEEEEECCCCCCCCHHHHHHHHCCCCEEEEEHHHHH
Q ss_conf 62001366777677-75202466504687522577777785001211201267655413889885226607898087884
Q gi|254780810|r 276 AYNVLMPSSGKILT-GGVDANALQRPKRFFGAARNIKEGGSLTIIGTALVDTGSRMDEVIFEEFKGTGNSEIVLERKIAD 354 (423)
Q Consensus 276 A~~~~~~~~g~~~~-gg~~~~~l~~~~~~~~~ar~~~~~Gs~T~~~t~lvetg~~~d~~i~~~~~~~~d~~i~L~r~la~ 354 (423)
T Consensus 258 A~REiGLAaGEP~aR~GyPPSVF~~LPRLLERaG~~e~-GSITA~YTVLvE-gDd~~dP~ADEvRSILDGHIvLsR~LA~ 335 (430)
T TIGR02546 258 ALREIGLAAGEPPARRGYPPSVFSSLPRLLERAGNSEK-GSITALYTVLVE-GDDMNDPIADEVRSILDGHIVLSRKLAE 335 (430)
T ss_pred HHHHHHHHCCCCCCCCCCCCCHHHHCCHHHCCCCCCCC-CCEEEEEEEEEC-CCCCCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 98778875378400257787366507501227861129-625345678762-7779984366554454236899899974
Q ss_pred CCCCCCCCCCCCCCCCHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHCCC--CHHHHHHHHH
Q ss_conf 79997405335422101551999999999999999612693789999999840289--9899998643
Q gi|254780810|r 355 KRIFPAMDIIKSGTRKEDLLVERQDLQKVFMLRRIVSSMNSSDAIEFLIDKLKQTK--DNKDFFYSMN 420 (423)
Q Consensus 355 ~~~~PAId~~~S~sR~~~~l~~~~~~~~~~~~r~~l~~~~~~e~~~~l~~~~~~~~--~n~e~l~~~~ 420 (423)
T Consensus 336 ~~HyPAIDVLaS~SRvm~~vv~~eH~~aA~~lR~LLA~Y~e~e---~LI-~lGEY~~G~D~~~D~A~~ 399 (430)
T TIGR02546 336 RNHYPAIDVLASLSRVMSQVVSKEHRRAAGKLRRLLAKYKEVE---LLI-RLGEYQPGSDPETDKAID 399 (430)
T ss_pred CCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHH---HHH-HHCCCCCCCCHHHHHHHH
T ss_conf 1688635665236642367788789999999999999999998---898-744888998988999997