HHsearch alignment for GI: 254780810 and conserved domain: TIGR02782
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB; InterPro: IPR014149 This entry represents TrbB, a protein, which is encoded in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer . TrbB is a homologue of the vir system VirB11 ATPase , and the Flp pilus system ATPase TadA ..
Probab=95.69 E-value=0.05 Score=32.48 Aligned_cols=106 Identities=20% Similarity=0.273 Sum_probs=76.0
Q ss_pred CCHHHHHCCCCHH-HCCCCCCCCCCCCCCCCC---------CCCCHHHHHHHHHHHHHCCCC-EEEECCCCCCHHHHHHH
Q ss_conf 8878851244300-020001122343247786---------532136888998865510231-22204877878999999
Q gi|254780810|r 125 DVPERVRNKIHFD-NLTPLYPDKRFNMELNNP---------ENKDISSRVIDLIAPIGKGQR-SLIVAPPRTGKTILLQN 193 (423)
Q Consensus 125 ~~~d~~~~~~~f~-~l~p~~p~~~i~le~~~~---------~p~~~~~~~id~~~pig~gqr-~~i~~~~~~gkt~ll~~ 193 (423)
T Consensus 81 LPldflGs--RFeGl~PPVV~~p~F~IRkkA~~vfTLDdYV~~gimtaaQ~d~l~~Av~ar~NIlv~GGTGSGKTTLaNA 158 (315)
T TIGR02782 81 LPLDFLGS--RFEGLLPPVVEAPSFAIRKKAVRVFTLDDYVEAGIMTAAQRDVLREAVAARKNILVVGGTGSGKTTLANA 158 (315)
T ss_pred CCCCHHHC--CCCCCCCCCCCCCCCHHCCCCCCCCCCHHHHHHCCCCHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHH
T ss_conf 75111201--1004687755655101110224104707776404455789999999997129889981458857999999
Q ss_pred HHHHHHH-CCCCCEEEEEECCCCHHHHHHHHHHHCCEEEECCCCCC
Q ss_conf 9999861-18864699995087878999999840342782366788
Q gi|254780810|r 194 IAHSIKK-NHPECYLIVLLIDERPEEVTDMQRSVQGEVISSTFDES 238 (423)
Q Consensus 194 ia~~~~~-~~~~v~~i~~ligEr~~ev~e~~~~~~~~vv~st~d~~ 238 (423)
T Consensus 159 lla~I~~l~~P~dR~vIi---EDT~ElQC~A---~N~V~lrT~d~~ 198 (315)
T TIGR02782 159 LLAEIAKLNDPDDRVVII---EDTAELQCAA---ENLVALRTSDDV 198 (315)
T ss_pred HHHHHHHCCCCCCEEEEE---ECCHHHHHCC---CCEEEEECCCCC
T ss_conf 999885216999618998---5471320137---870687448986