HHsearch alignment for GI: 254780810 and conserved domain: TIGR02788
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11; InterPro: IPR014155 This entry contains VirB11, a protein that is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer . VirB11 is believed to be an ATPase and is a homologue of the P-like conjugation system TrbB protein and the Flp pilus system protein TadA ..
Probab=94.62 E-value=0.16 Score=29.21 Aligned_cols=91 Identities=21% Similarity=0.179 Sum_probs=53.0
Q ss_pred CCC-EEEEEEEECCCCCCCCCCEEECCCCCCCHHHHHCCCCHHHCCCCCC-CCCCCCCCCCCCCCCHH--HHHHHHH--H
Q ss_conf 598-7999886246888763000222255688788512443000200011-22343247786532136--8889988--6
Q gi|254780810|r 96 TGD-TVEGSIRAPREGERYFALLKVNAINFDVPERVRNKIHFDNLTPLYP-DKRFNMELNNPENKDIS--SRVIDLI--A 169 (423)
Q Consensus 96 ~GD-~V~g~~r~~~~~~~~~~L~rV~~vnG~~~d~~~~~~~f~~l~p~~p-~~~i~le~~~~~p~~~~--~~~id~~--~ 169 (423)
T Consensus 89 ~~~eTvs~tIRKpS~~~-------------~sL~dy~~~G~F~~ar~~~~~~~~~~~d~--~~~L~el~~~g~~~~Fl~~ 153 (328)
T TIGR02788 89 ENDETVSITIRKPSLVD-------------LSLDDYEEKGFFDTARAVVVPASTELSDK--DEELLELLDAGDIKEFLRL 153 (328)
T ss_pred CCCCEEEEEEECCCCCC-------------CCHHHHHHCCCCCEEEEEECCCCCCCCHH--HHHHHHHHHCCCHHHHHHH
T ss_conf 89885899995264445-------------54799962798544777631443443468--9999999862888799999
Q ss_pred HHHCCCCEEEECCCCCCHHHHHHHHHHHHHHC
Q ss_conf 55102312220487787899999999998611
Q gi|254780810|r 170 PIGKGQRSLIVAPPRTGKTILLQNIAHSIKKN 201 (423)
Q Consensus 170 pig~gqr~~i~~~~~~gkt~ll~~ia~~~~~~ 201 (423)
T Consensus 154 Ai~~~knIii~GGTgSGKTTf~kal~~~IP~~ 185 (328)
T TIGR02788 154 AIASRKNIIISGGTGSGKTTFLKALVKEIPKD 185 (328)
T ss_pred HHHCCCEEEEEECCCCHHHHHHHHHHHCCCCC
T ss_conf 98738919999068971899999997327622