HHsearch alignment for GI: 254780810 and conserved domain: TIGR03015

>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=97.29  E-value=0.0021  Score=41.51  Aligned_cols=116  Identities=17%  Similarity=0.239  Sum_probs=60.7

Q ss_pred             CCCCCCCCCCCCCCCCCHHHHHHHHHHH-HHCCCC-EEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHH
Q ss_conf             1122343247786532136888998865-510231-22204877878999999999986118864699995087878999
Q gi|254780810|r  143 YPDKRFNMELNNPENKDISSRVIDLIAP-IGKGQR-SLIVAPPRTGKTILLQNIAHSIKKNHPECYLIVLLIDERPEEVT  220 (423)
Q Consensus       143 ~p~~~i~le~~~~~p~~~~~~~id~~~p-ig~gqr-~~i~~~~~~gkt~ll~~ia~~~~~~~~~v~~i~~ligEr~~ev~  220 (423)
T Consensus        16 ~pd~~~~y~s~~------h~~al~~L~~~l~~~~g~~lltGe~GtGKTtllr~l~~~l~~~---~~~~~~i~~~~-l~~~   85 (269)
T TIGR03015        16 LPDPDFFYPSKG------HKRAMAYLEYGLSQREGFILITGEVGAGKTTLIRNLLKRLDQE---RVVAAKLVNTR-VDAE   85 (269)
T ss_pred             CCCHHHCCCCHH------HHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHCCCC---CEEEEEECCCC-CCHH
T ss_conf             998454147866------9999999999996489659997299898899999999845934---54899976999-9999


Q ss_pred             HHHHHHCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHH
Q ss_conf             999840342782366788889999999999999999977992899981638
Q gi|254780810|r  221 DMQRSVQGEVISSTFDESAARHVQVAEMVIAKAKCLVEYGLDVVILLDSIT  271 (423)
Q Consensus       221 e~~~~~~~~vv~st~d~~~~~~~~~a~~a~~~a~~~~e~G~dVll~~DslT  271 (423)
T Consensus        86 ~ll~~i~~~lg~~~~~~~~~~~~~~---l~~~L~~~~~~g~~~vliIDEAq  133 (269)
T TIGR03015        86 DLLRMVAADFGLETEGRDKAALLRE---LEDFLIEQFAAGKRALLVVDEAQ  133 (269)
T ss_pred             HHHHHHHHHCCCCCCCCCHHHHHHH---HHHHHHHHHHCCCCEEEEEECHH
T ss_conf             9999999985989889899999999---99999999966994699972422