HHsearch alignment for GI: 254780810 and conserved domain: TIGR03015
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=97.29 E-value=0.0021 Score=41.51 Aligned_cols=116 Identities=17% Similarity=0.239 Sum_probs=60.7
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHH-HHCCCC-EEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHH
Q ss_conf 1122343247786532136888998865-510231-22204877878999999999986118864699995087878999
Q gi|254780810|r 143 YPDKRFNMELNNPENKDISSRVIDLIAP-IGKGQR-SLIVAPPRTGKTILLQNIAHSIKKNHPECYLIVLLIDERPEEVT 220 (423)
Q Consensus 143 ~p~~~i~le~~~~~p~~~~~~~id~~~p-ig~gqr-~~i~~~~~~gkt~ll~~ia~~~~~~~~~v~~i~~ligEr~~ev~ 220 (423)
T Consensus 16 ~pd~~~~y~s~~------h~~al~~L~~~l~~~~g~~lltGe~GtGKTtllr~l~~~l~~~---~~~~~~i~~~~-l~~~ 85 (269)
T TIGR03015 16 LPDPDFFYPSKG------HKRAMAYLEYGLSQREGFILITGEVGAGKTTLIRNLLKRLDQE---RVVAAKLVNTR-VDAE 85 (269)
T ss_pred CCCHHHCCCCHH------HHHHHHHHHHHHHCCCCEEEEECCCCCCHHHHHHHHHHHCCCC---CEEEEEECCCC-CCHH
T ss_conf 998454147866------9999999999996489659997299898899999999845934---54899976999-9999
Q ss_pred HHHHHHCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHH
Q ss_conf 999840342782366788889999999999999999977992899981638
Q gi|254780810|r 221 DMQRSVQGEVISSTFDESAARHVQVAEMVIAKAKCLVEYGLDVVILLDSIT 271 (423)
Q Consensus 221 e~~~~~~~~vv~st~d~~~~~~~~~a~~a~~~a~~~~e~G~dVll~~DslT 271 (423)
T Consensus 86 ~ll~~i~~~lg~~~~~~~~~~~~~~---l~~~L~~~~~~g~~~vliIDEAq 133 (269)
T TIGR03015 86 DLLRMVAADFGLETEGRDKAALLRE---LEDFLIEQFAAGKRALLVVDEAQ 133 (269)
T ss_pred HHHHHHHHHCCCCCCCCCHHHHHHH---HHHHHHHHHHCCCCEEEEEECHH
T ss_conf 9999999985989889899999999---99999999966994699972422