HHsearch alignment for GI: 254780810 and conserved domain: TIGR03375
>TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export.
Probab=95.09 E-value=0.001 Score=43.50 Aligned_cols=108 Identities=19% Similarity=0.283 Sum_probs=57.5
Q ss_pred HHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCC---CHHHHHHHHHHH---C--CEEEECC----
Q ss_conf 886551023122204877878999999999986118864699995087---878999999840---3--4278236----
Q gi|254780810|r 167 LIAPIGKGQRSLIVAPPRTGKTILLQNIAHSIKKNHPECYLIVLLIDE---RPEEVTDMQRSV---Q--GEVISST---- 234 (423)
Q Consensus 167 ~~~pig~gqr~~i~~~~~~gkt~ll~~ia~~~~~~~~~v~~i~~ligE---r~~ev~e~~~~~---~--~~vv~st---- 234 (423)
T Consensus 484 vsl~i~~Ge~vaIvG~sGsGKSTL~kll~Gl~~p~~---G~-i-~idg~~~~~~~~~~~r~~i~~v~Q~~~lf~gTi~eN 558 (694)
T TIGR03375 484 VSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTE---GS-V-LLDGVDIRQIDPADLRRNIGYVPQDPRLFYGTLRDN 558 (694)
T ss_pred HHHEECCCCEEEEEECCCCCHHHHHHHHCCCCCCCC---CE-E-EECCEECCCCCHHHHHHHCEEECCCCCCCCCCHHHH
T ss_conf 311887997899980589878899998556758998---87-9-989854254999999730213576771107469999
Q ss_pred ---CCCC-HHHHHH-HHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHCCCCCCCCCCCCCCCH
Q ss_conf ---6788-889999-99999999999997799289998163898776200136677767775202
Q gi|254780810|r 235 ---FDES-AARHVQ-VAEMVIAKAKCLVEYGLDVVILLDSITRLCRAYNVLMPSSGKILTGGVDA 294 (423)
Q Consensus 235 ---~d~~-~~~~~~-~a~~a~~~a~~~~e~G~dVll~~DslTR~ArA~~~~~~~~g~~~~gg~~~ 294 (423)
T Consensus 559 i~~~~~~~~~~~i~~a~~~---------------a~l~~~I~~lp~g~~t~i~e~G~~LSgGqrQ 608 (694)
T TIGR03375 559 IALGAPYADDEEILRAAEL---------------AGVTEFVRRHPDGLDMQIGERGRSLSGGQRQ 608 (694)
T ss_pred HHCCCCCCCHHHHHHHHHH---------------HCCHHHHHHCCCCCCCEECCCCCCCCHHHHH
T ss_conf 8416999999999999998---------------1979999718566787746899946899999