HHsearch alignment for GI: 254780810 and conserved domain: TIGR03497
>TIGR03497 FliI_clade2 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=100.00 E-value=0 Score=575.49 Aligned_cols=325 Identities=23% Similarity=0.227 Sum_probs=304.4
Q ss_pred CCCCCCCCCEEECCCCCCCCCCCCCEEEEEEEECCCCCCCCCCEEECCCCCCCHHHHHCCCCHHHCCCCCCCCCCCCCCC
Q ss_conf 86666556046010000122125987999886246888763000222255688788512443000200011223432477
Q gi|254780810|r 74 NYLAGPDDIYVSPSQIKSFSLKTGDTVEGSIRAPREGERYFALLKVNAINFDVPERVRNKIHFDNLTPLYPDKRFNMELN 153 (423)
Q Consensus 74 ~yl~~~~DiyVs~slir~f~Lr~GD~V~g~~r~~~~~~~~~~L~rV~~vnG~~~d~~~~~~~f~~l~p~~p~~~i~le~~ 153 (423)
T Consensus 37 EVv~~~~~~~~l~~~~~t~Gi~~G~~V~~tg~~~~vpvg~~lLGRV~d~~G~PlDg~~~~~~~~~~~i~~~~p~p~~R~~ 116 (413)
T TIGR03497 37 EVVGFKEENVLLMPLGEVEGIGPGSLVIATGRPLAIKVGKGLLGRVLDGLGRPLDGEGPIIGEEPYPLDNPPPNPLKRPR 116 (413)
T ss_pred EEEEECCCEEEEEEECCCCCCCCCCEEEECCCCCEEECCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCC
T ss_conf 99998299799999369878899999998999747886843056887767665589867777611444468996344067
Q ss_pred CCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHH-------
Q ss_conf 8653213688899886551023122204877878999999999986118864699995087878999999840-------
Q gi|254780810|r 154 NPENKDISSRVIDLIAPIGKGQRSLIVAPPRTGKTILLQNIAHSIKKNHPECYLIVLLIDERPEEVTDMQRSV------- 226 (423)
Q Consensus 154 ~~~p~~~~~~~id~~~pig~gqr~~i~~~~~~gkt~ll~~ia~~~~~~~~~v~~i~~ligEr~~ev~e~~~~~------- 226 (423)
T Consensus 117 i~e~l~TGIraID~l~pigrGQRigIfag~GvGKt~Ll~~ia~~~~ad----v~Vi~liGERgrEv~ef~~~~l~~~~l~ 192 (413)
T TIGR03497 117 IRDPLETGIKAIDGLLTIGKGQRVGIFAGSGVGKSTLLGMIARNAKAD----INVIALIGERGREVRDFIEKDLGEEGLK 192 (413)
T ss_pred CCCEEECCCEEECCCCCCCCCCEEEECCCCCCCHHHHHHHHHHHHCCC----CCEEEEEEEECHHHHHHHHHHHCCCCCC
T ss_conf 883420386542165761137544210589987769999999874378----5238886332289999999863125642
Q ss_pred CCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHCCCCCCCCCCC-CCCCHHHHHHCHHHHH
Q ss_conf 342782366788889999999999999999977992899981638987762001366777677-7520246650468752
Q gi|254780810|r 227 QGEVISSTFDESAARHVQVAEMVIAKAKCLVEYGLDVVILLDSITRLCRAYNVLMPSSGKILT-GGVDANALQRPKRFFG 305 (423)
Q Consensus 227 ~~~vv~st~d~~~~~~~~~a~~a~~~a~~~~e~G~dVll~~DslTR~ArA~~~~~~~~g~~~~-gg~~~~~l~~~~~~~~ 305 (423)
T Consensus 193 rtvvv~atsd~p~~~r~~a~~~a~aiAEyfrd~Gk~VLl~~Dsltr~A~A~REisl~~ge~P~~~gyp~~~~s~l~~l~E 272 (413)
T TIGR03497 193 RSVVVVATSDQPALMRLKAAFTATAIAEYFRDQGKDVLLMMDSVTRFAMAQREIGLAVGEPPTTRGYTPSVFSLLPKLLE 272 (413)
T ss_pred EEEEEEECCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHH
T ss_conf 15999845878879998877463278999986799689997371298899999998658999887868549988789888
Q ss_pred CCCCCCCCCCCEEEEEEEECCCCCCCCHHHHHHHHCCCCEEEEEHHHHHCCCCCCCCCCCCCCCCHHHCCCHHHHHHHHH
Q ss_conf 25777777850012112012676554138898852266078980878847999740533542210155199999999999
Q gi|254780810|r 306 AARNIKEGGSLTIIGTALVDTGSRMDEVIFEEFKGTGNSEIVLERKIADKRIFPAMDIIKSGTRKEDLLVERQDLQKVFM 385 (423)
Q Consensus 306 ~ar~~~~~Gs~T~~~t~lvetg~~~d~~i~~~~~~~~d~~i~L~r~la~~~~~PAId~~~S~sR~~~~l~~~~~~~~~~~ 385 (423)
T Consensus 273 Rag~~-~~GSIT~~~~v~~~-~dD~tdPi~d~~~si~DG~ivLsr~la~~g~yPaIdvl~S~SR~~~~~~~~~h~~~a~~ 350 (413)
T TIGR03497 273 RSGNS-QKGSITGFYTVLVD-GDDMNEPIADAVRGILDGHIVLSRELAAKNHYPAIDVLASVSRVMNEIVSEEHKELAGK 350 (413)
T ss_pred HHCCC-CCCCEEEEEEEEEC-CCCCCCCCHHHHHHHCCEEEEECHHHHHCCCCCCCCCCCCHHHCCHHHCCHHHHHHHHH
T ss_conf 61389-99854667789712-88767771666757506189986889866999981864246553431156999999999
Q ss_pred HHHHHHCCCCHHHHHHHHH
Q ss_conf 9999612693789999999
Q gi|254780810|r 386 LRRIVSSMNSSDAIEFLID 404 (423)
Q Consensus 386 ~r~~l~~~~~~e~~~~l~~ 404 (423)
T Consensus 351 ~r~~~a~y~e~~~li~~g~ 369 (413)
T TIGR03497 351 LRELLAVYKEAEDLINIGA 369 (413)
T ss_pred HHHHHHHHHHHHHHHHHHC
T ss_conf 9999998899999999628