HHsearch alignment for GI: 254780810 and conserved domain: TIGR03522
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=93.63 E-value=0.073 Score=31.38 Aligned_cols=53 Identities=17% Similarity=0.171 Sum_probs=34.7
Q ss_pred HHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHH
Q ss_conf 86551023122204877878999999999986118864699995087878999
Q gi|254780810|r 168 IAPIGKGQRSLIVAPPRTGKTILLQNIAHSIKKNHPECYLIVLLIDERPEEVT 220 (423)
Q Consensus 168 ~~pig~gqr~~i~~~~~~gkt~ll~~ia~~~~~~~~~v~~i~~ligEr~~ev~ 220 (423)
T Consensus 22 sf~v~~Gei~gllGpNGAGKTTl~~~l~Gl~~p~~G~i~i~G~~~~~~~~~~~ 74 (301)
T TIGR03522 22 SFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPKEVQ 74 (301)
T ss_pred EEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCCEEEECCEECCCCHHHHH
T ss_conf 67885981999999999819999999967956897779992751344879998