HHsearch alignment for GI: 254780810 and conserved domain: cd00009
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.03 E-value=0.0053 Score=38.86 Aligned_cols=87 Identities=21% Similarity=0.179 Sum_probs=48.5
Q ss_pred HHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECC-CCHHHHHHHHHHHCCEEEECCCCCCHHHH
Q ss_conf 89988655102312220487787899999999998611886469999508-78789999998403427823667888899
Q gi|254780810|r 164 VIDLIAPIGKGQRSLIVAPPRTGKTILLQNIAHSIKKNHPECYLIVLLID-ERPEEVTDMQRSVQGEVISSTFDESAARH 242 (423)
Q Consensus 164 ~id~~~pig~gqr~~i~~~~~~gkt~ll~~ia~~~~~~~~~v~~i~~lig-Er~~ev~e~~~~~~~~vv~st~d~~~~~~ 242 (423)
T Consensus 9 ~l~~~~~~~~~~~ill~GppGtGKT~la~~ia~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~--------------- 71 (151)
T cd00009 9 ALREALELPPPKNLLLYGPPGTGKTTLARAIANELFRP--GAPFLYLNASDLLEGLVVAELFGHF--------------- 71 (151)
T ss_pred HHHHHHHCCCCCEEEEECCCCCCHHHHHHHHHHHHCCC--CCCEEEEEHHHCCHHHHHHHHHHHH---------------
T ss_conf 99999818799808998999988659999999971213--7982785477704677775760577---------------
Q ss_pred HHHHHHHHHHHHHHHHCCCCEEEEEECHHHH
Q ss_conf 9999999999999997799289998163898
Q gi|254780810|r 243 VQVAEMVIAKAKCLVEYGLDVVILLDSITRL 273 (423)
Q Consensus 243 ~~~a~~a~~~a~~~~e~G~dVll~~DslTR~ 273 (423)
T Consensus 72 ------~~~~~~~~~~~~~~~vl~iDEi~~l 96 (151)
T cd00009 72 ------LVRLLFELAEKAKPGVLFIDEIDSL 96 (151)
T ss_pred ------HHHHHHHHHHHCCCCEEEEECHHHC
T ss_conf ------8898999999769986982016655