HHsearch alignment for GI: 254780810 and conserved domain: cd01124
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=98.06 E-value=3.7e-05 Score=53.04 Aligned_cols=167 Identities=17% Similarity=0.152 Sum_probs=86.0
Q ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHHHHHHHHH---------CCE--EEE-CCCCCCHHHHHH
Q ss_conf 22204877878999999999986118864699995087878999999840---------342--782-366788889999
Q gi|254780810|r 177 SLIVAPPRTGKTILLQNIAHSIKKNHPECYLIVLLIDERPEEVTDMQRSV---------QGE--VIS-STFDESAARHVQ 244 (423)
Q Consensus 177 ~~i~~~~~~gkt~ll~~ia~~~~~~~~~v~~i~~ligEr~~ev~e~~~~~---------~~~--vv~-st~d~~~~~~~~ 244 (423)
T Consensus 2 tLi~G~pGsGKT~~a~qfl~~~a~~g--e~~lyis~eE~~~~l~~~~~~~g~d~~~~~~~g~l~i~~~~~~~~~~~~~~~ 79 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARG--EPGLYVTLEESPEELIENAESLGWDLERLEDEGLLAIVDADPDEIGPAESSL 79 (187)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHCC--CCEEEEEECCCHHHHHHHHHHCCCCHHHHHHCCCEEEEECCCCCCCCHHHHH
T ss_conf 15876899999999999999998769--9789999507999999999983998589864585689962620022033323
Q ss_pred HHHHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHCHHHHHCCCCCCCCCCCEEEEEEEE
Q ss_conf 99999999999997799289998163898776200136677767775202466504687522577777785001211201
Q gi|254780810|r 245 VAEMVIAKAKCLVEYGLDVVILLDSITRLCRAYNVLMPSSGKILTGGVDANALQRPKRFFGAARNIKEGGSLTIIGTALV 324 (423)
Q Consensus 245 ~a~~a~~~a~~~~e~G~dVll~~DslTR~ArA~~~~~~~~g~~~~gg~~~~~l~~~~~~~~~ar~~~~~Gs~T~~~t~lv 324 (423)
T Consensus 80 ~~~l~~~i~~~i~~~~~~~-vVIDSi~~l~~~~~---------------~~~~~~~~~l~~~---l~~-~~~t~ll~~e~ 139 (187)
T cd01124 80 RLELIQRLKDAIEEFKAKR-VVIDSVSGLLLMEQ---------------STARLEIRRLLFA---LKR-FGVTTLLTSEQ 139 (187)
T ss_pred HHHHHHHHHHHHHHHCCCE-EEECCHHHHHHCCH---------------HHHHHHHHHHHHH---HHH-CCCCEEEEEEE
T ss_conf 6789999999999849989-99948688752566---------------6689999999999---997-69968999974
Q ss_pred CCCCCCCCHHHHHHHHCCCCEEEEEHHHHHCCCCCCCCCCCC
Q ss_conf 267655413889885226607898087884799974053354
Q gi|254780810|r 325 DTGSRMDEVIFEEFKGTGNSEIVLERKIADKRIFPAMDIIKS 366 (423)
Q Consensus 325 etg~~~d~~i~~~~~~~~d~~i~L~r~la~~~~~PAId~~~S 366 (423)
T Consensus 140 ~~~-~~~~~~~~~~~~l~DgiI~L~~~~~~~~~~R~l~I~Km 180 (187)
T cd01124 140 SGL-EGTGFGGGDVEYLVDGVIRLRLDEEGGRLRRSLSVVKM 180 (187)
T ss_pred CCC-CCCCCCCCCEEEEEEEEEEEEEEECCCEEEEEEEEEEC
T ss_conf 256-67667888477997899999788049979999999985