HHsearch alignment for GI: 254780810 and conserved domain: cd01127
>cd01127 TrwB Bacterial conjugation protein TrwB, ATP binding domain. TrwB is a homohexamer encoded by conjugative plasmids in Gram-negative bacteria. TrwB also has an all alpha domain which has been hypothesized to be responsible for DNA binding. TrwB is a component of Type IV secretion and is responsible for the horizontal transfer of DNA between bacteria.
Probab=92.89 E-value=0.33 Score=27.05 Aligned_cols=61 Identities=16% Similarity=0.227 Sum_probs=27.1
Q ss_pred CCHHHHHHHHHHHC--CEEE-ECCCCCCHHHHHHHHHHHHHHHHHHH----HCCCCEEEEEECHHHHH
Q ss_conf 78789999998403--4278-23667888899999999999999999----77992899981638987
Q gi|254780810|r 214 ERPEEVTDMQRSVQ--GEVI-SSTFDESAARHVQVAEMVIAKAKCLV----EYGLDVVILLDSITRLC 274 (423)
Q Consensus 214 Er~~ev~e~~~~~~--~~vv-~st~d~~~~~~~~~a~~a~~~a~~~~----e~G~dVll~~DslTR~A 274 (423)
T Consensus 216 ~~~FSird~i~~~~~~~~Lfi~~~~d~~~~l~pLisl~l~~~~~~ll~~~~~~~~rv~~~lDE~~~l~ 283 (410)
T cd01127 216 KEPFSIRDWVRDEDPPGFLFITSNADMRASLRPLISTWLDVAVNTLLGLPENRERRLWFFIDELPSLH 283 (410)
T ss_pred CCCCCHHHHHHCCCCCEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECHHCCC
T ss_conf 89971899972888871899972775688999999999999999985388767860799988700037