HHsearch alignment for GI: 254780810 and conserved domain: cd01130
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=93.82 E-value=0.14 Score=29.49 Aligned_cols=54 Identities=24% Similarity=0.242 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHCCCC-EEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCCHHHH
Q ss_conf 36888998865510231-2220487787899999999998611886469999508787899
Q gi|254780810|r 160 ISSRVIDLIAPIGKGQR-SLIVAPPRTGKTILLQNIAHSIKKNHPECYLIVLLIDERPEEV 219 (423)
Q Consensus 160 ~~~~~id~~~pig~gqr-~~i~~~~~~gkt~ll~~ia~~~~~~~~~v~~i~~ligEr~~ev 219 (423)
T Consensus 10 ~~~~~~~~L~~~v~~~~nIlIsG~tGSGKTTll~al~~~i~~~----~riv-ti-Ed~~El 64 (186)
T cd01130 10 FSPLQAAYLWLAVEARKNILISGGTGSGKTTLLNALLAFIPPD----ERII-TI-EDTAEL 64 (186)
T ss_pred CCHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHHCCCC----CCEE-EE-CCCHHH
T ss_conf 9999999999999859989998999998999999999613345----6459-84-153540