HHsearch alignment for GI: 254780810 and conserved domain: cd01393
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=97.10 E-value=0.024 Score=34.51 Aligned_cols=111 Identities=18% Similarity=0.284 Sum_probs=62.8
Q ss_pred CHHHHHHHHHHH--HHCCCCEEEECCCCCCHHHHHHHHHHHHHHCC----CCCEEEEEECCC---CHHHHHHHHHH----
Q ss_conf 136888998865--51023122204877878999999999986118----864699995087---87899999984----
Q gi|254780810|r 159 DISSRVIDLIAP--IGKGQRSLIVAPPRTGKTILLQNIAHSIKKNH----PECYLIVLLIDE---RPEEVTDMQRS---- 225 (423)
Q Consensus 159 ~~~~~~id~~~p--ig~gqr~~i~~~~~~gkt~ll~~ia~~~~~~~----~~v~~i~~ligE---r~~ev~e~~~~---- 225 (423)
T Consensus 2 sTG~~~lD~~LgGGip~G~ItEi~G~~gsGKT~l~lqla~~~q~~~~~~~~~g~vvyI-DtE~~f~~~rl~~i~~~~~~~ 80 (226)
T cd01393 2 STGSKALDELLGGGIPTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYI-DTEGAFRPERLVQLAVRFGLD 80 (226)
T ss_pred CCCCHHHHHHHCCCCCCCEEEEEECCCCCCHHHHHHHHHHHHHCCCCCCCCCCEEEEE-ECCCCCCHHHHHHHHHHHCCC
T ss_conf 8874789988579988883999999999989999999999985422116999619999-557753199999998760326
Q ss_pred ----HCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECHHHHHHH
Q ss_conf ----034278236678888999999999999999997799289998163898776
Q gi|254780810|r 226 ----VQGEVISSTFDESAARHVQVAEMVIAKAKCLVEYGLDVVILLDSITRLCRA 276 (423)
Q Consensus 226 ----~~~~vv~st~d~~~~~~~~~a~~a~~~a~~~~e~G~dVll~~DslTR~ArA 276 (423)
T Consensus 81 ~~~~l~~i~~~~~~~--~e~~----~~~~~~l~~~~~~~~v~liViDSi~al~r~ 129 (226)
T cd01393 81 PEEVLDNIYVARPYN--GEQQ----LEIVEELERIMSSGRVDLVVVDSVAALFRK 129 (226)
T ss_pred HHHHHHHEEEECCCC--HHHH----HHHHHHHHHHHHCCCCEEEEEECCCEECCH
T ss_conf 677643336843799--9999----999999998752478428999322001114