HHsearch alignment for GI: 254780810 and conserved domain: cd03216
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=93.43 E-value=0.06 Score=31.94 Aligned_cols=105 Identities=17% Similarity=0.265 Sum_probs=54.6
Q ss_pred HHHHCCCCEEEECCCCCCHHHHHHHHHHHHHHCCCCCEEEEEECCCC--HHHHHHHHHHHCCEEEECCCCCCHHHHHHHH
Q ss_conf 65510231222048778789999999999861188646999950878--7899999984034278236678888999999
Q gi|254780810|r 169 APIGKGQRSLIVAPPRTGKTILLQNIAHSIKKNHPECYLIVLLIDER--PEEVTDMQRSVQGEVISSTFDESAARHVQVA 246 (423)
Q Consensus 169 ~pig~gqr~~i~~~~~~gkt~ll~~ia~~~~~~~~~v~~i~~ligEr--~~ev~e~~~~~~~~vv~st~d~~~~~~~~~a 246 (423)
T Consensus 21 l~i~~Gei~~lvG~nGaGKSTl~~~i~Gl~~p~~G---~i~-i~G~~i~~~~~~~~~~~--gi~~v--~qLSgG~~Qrv~ 92 (163)
T cd03216 21 LSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSG---EIL-VDGKEVSFASPRDARRA--GIAMV--YQLSVGERQMVE 92 (163)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHHCCCCCCCC---EEE-ECCEECCCCCHHHHHHC--CCCEE--CCCCHHHHHHHH
T ss_conf 89879989999988998999999999577689857---899-99999999999999987--99489--469989999999
Q ss_pred HHHHHHHHHHHHCCCCEEEEEECHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHCHHHHHC
Q ss_conf 999999999997799289998163898776200136677767775202466504687522
Q gi|254780810|r 247 EMVIAKAKCLVEYGLDVVILLDSITRLCRAYNVLMPSSGKILTGGVDANALQRPKRFFGA 306 (423)
Q Consensus 247 ~~a~~~a~~~~e~G~dVll~~DslTR~ArA~~~~~~~~g~~~~gg~~~~~l~~~~~~~~~ 306 (423)
T Consensus 93 i---ara--l~-~~p~-llilDE------------------Pt~gLD~~~~~~i~~~l~~ 127 (163)
T cd03216 93 I---ARA--LA-RNAR-LLILDE------------------PTAALTPAEVERLFKVIRR 127 (163)
T ss_pred H---HHH--HH-HCCC-EEEEEC------------------CCCCCCHHHHHHHHHHHHH
T ss_conf 9---999--97-2999-999909------------------7557999999999999999