HHsearch alignment for GI: 254780810 and conserved domain: cd03223
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=95.60 E-value=0.0073 Score=37.94 Aligned_cols=47 Identities=38% Similarity=0.572 Sum_probs=34.6
Q ss_pred HHHCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHH
Q ss_conf 0002000112234324778653213688899886551023122204877878999999999
Q gi|254780810|r 136 FDNLTPLYPDKRFNMELNNPENKDISSRVIDLIAPIGKGQRSLIVAPPRTGKTILLQNIAH 196 (423)
Q Consensus 136 f~~l~p~~p~~~i~le~~~~~p~~~~~~~id~~~pig~gqr~~i~~~~~~gkt~ll~~ia~ 196 (423)
T Consensus 3 ~~nvsf~y~~~~~il~--------------~isl~i~~Ge~v~i~G~sGsGKSTLl~~l~G 49 (166)
T cd03223 3 LENLSLATPDGRVLLK--------------DLSFEIKPGDRLLITGPSGTGKSSLFRALAG 49 (166)
T ss_pred EEEEEEECCCCCEEEE--------------EEEEEECCCCEEEEECCCCCCHHHHHHHHCC
T ss_conf 9899998899998894--------------4588988999999995899988999999869